CiteULike CiteULike
Delicious Delicious
Connotea Connotea

Citation for Study 16918

Reviewer/Referee Access Agreement

You have reached this page using a special URL that is intended to be used by journal editors and reviewers or referees of a paper that is under consideration for publication. This URL gives you access to the submitted data and metadata associated with analyses and results presented in the paper under review. Please carefully examine the data paying special attention to the following:
  • The citation data (authors, year, citation, abstract) should be complete, except for information that is not yet known (e.g. volume or page numbers).
  • Verify that nexus files are error-free and executable by software programs (e.g. PAUP, Mesquite, MacClade, etc). Please make sure that the taxon labels for trees are identical, or a subset of, the taxon labels in data matrices connected by way of an analysis. If taxon labels in trees do not match with taxon labels in associated data matrices, the data will not be useful to the scientific community.
  • Verify that data are not missing and that opportunities to supply valuable metadata are not overlooked. For example, TreeBASE can store Genbank accession numbers, museum voucher IDs, latitude and longitudes for specimen localities, character names and character state names for morphological data, etc. Including these metadata are sometimes overlooked by submitting authors, yet sharing this metadata is extremely valuable to the scientific community. Please use your power as a reviewer to encourage the sharing of richly-annotated metadata.
  • Verify that analyses are not missing and that, where possible, analysis entries include software commands (e.g. the contents of a PAUP block or MrBayes block) so that analyses can be replicated easily (e.g. commands that describe substitution models, data partitions, and heuristic search parameters).
  • Verify that taxon labels are mapped against TreeBASE's taxonomic dictionary. Data in TreeBASE can only be found using a taxon name search if the taxon labels are properly mapped.
By clicking the 'OK' button below, you agree to keep these data confidential; you agree not to retain these data after completing your report to the journal editor; you agree not to use these data or knowledge of these data for the purposes of your research until and unless the paper under review has been published and the data have been made available to the general public; you agree to keep the URL confidential.
About Citation title: "Dated plant phylogenies resolve Neogene climate and landscape evolution in the Cape Floristic Region".
About Study name: "Dated plant phylogenies resolve Neogene climate and landscape evolution in the Cape Floristic Region".
About This study is part of submission 16918 (Status: In Progress).

Citation

Hoffmann V., Verboom G.A., & Cotterill F.P. 2015. Dated plant phylogenies resolve Neogene climate and landscape evolution in the Cape Floristic Region. PLOS ONE, 10(9).

Authors

  • Hoffmann V. (submitter)
  • Verboom G.A.
  • Cotterill F.P.

Abstract

In the context of molecularly-dated phylogenies, ancestral habitat reconstruction inference can yield valuable insights into the origins of biomes, palaeoenvironments and landforms. In this paper, we use dated phylogenies of 12 plant clades from the Cape Floristic Region (CFR) in southern Africa to test hypotheses of Neogene climatic and geomorphic evolution. Our combined dataset strengthens and refines previous palaeoenvironmental reconstructions weakened by a sparse, mostly offshore fossil record. Our reconstructions show remarkable consistency with regard to both the types of environments identified as ancestral, and the timing of shifts to alternative conditions. They reveal that Early Miocene land surfaces of the CFR were wetter than at present and were dominated by quartzitic substrata. These conditions continue to characterize the higher-elevation settings of the Cape Fold Belt, where they have fostered the persistence of ancient fynbos lineages. The Middle Miocene (13-17 Ma) saw the development of perennial to weak seasonally-arid conditions, with the strongly seasonal rainfall regime of the west coast arising ~6.5-8 Ma. Although the Late Miocene may have seen some exposure of the underlying shale substrata, the present-day substrate diversity of the CFR lowlands was shaped by Pliocene-Pleistocene events. Particularly important was renewed erosion, following the post-African II uplift episode, and the reworking of sediments on the coastal platform as a consequence of marine transgressions and tectonic uplift. These changes facilitated adaptive radiations in some, but not all, lineages studied.

Keywords

ancestral trait reconstruction;molecular dating;geoecodynamics;geomorphology;paleoclimate;phylogeny

External links

About this resource

  • Canonical resource URI: http://purl.org/phylo/treebase/phylows/study/TB2:S16918
  • Other versions: Download Reconstructed NEXUS File Nexus Download NeXML File NeXML
  • Show BibTeX reference
  • Show RIS reference