#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 24, 2024; 14:30 GMT TreeBASE (cc) 1994-2008 Study reference: Brown K., Li L., Bailes E., & Tarlinton R.E. 2015. An Endogenous Lentivirus in a Mainland African Primate. Evolution, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S17230] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=64; TAXLABELS Bovine_immunodeficiency_virus Caprine_arthritis_enephalitis_virus ELVgv_Malayan_Colugo ELVmpf_Ferret Equine_infectious_anaemia_virus FIVOma_Pallas_Cat FIVPleE_Lion FIVaju_Cheetah FIVccr_Spotted_Hyena FIVfca_Domestic_cat_Subtype_C FIVfca_Domestic_cat_TM2 FIVhya_Jaguarundi FIVlpa_Ocelot FIVlru_Bobcat FIVpco_Puma HIV_1_Group_M HIV_1_Group_N HIV_1_Group_O HIV_1_Group_P HIV_2_Group_A HIV_2_Group_B HIV1_Group_U Maedi_Visna_virus Mason_Pfizer_Monkey_Virus Ovine_lentivirus PSIVfdl_Fat_Tailed_Dwarf_Lemur PSIVgml_Grey_Mouse_Lemur RELIK_European_Rabbit SIVagi_Agile_Mangabey SIVagmGri_African_Green_Monkey_Grivet SIVagmSab_Afican_Green_Monkey_Sabaeus SIVagmTan_African_Green_Monkey_Tantalus SIVagmVer_White_Crowned_Mangabey SIVasc_Red_Tailed_Monkey SIVbkm_Black_Mangabey SIVblc_Black_Colobus SIVcol_Mantled_Guereza SIVcpz_Central_African_Chimpanzee SIVcpz_Eastern_Chimpanzee SIVdeb_De_Brazzas_Monkey SIVden_Dents_Mona SIVdrl_Drill SIVgor_Gorilla SIVgsn_Greater_Spot_Nosed_Monkey SIVlhoest_LHoests_Monkey SIVmac_Rhesus_Macaque SIVmnd1_Mandrill SIVmnd2_Mandrill SIVmon_Mona_Monkey SIVmus_Moustached_Guenon SIVnme_Pig_Tailed_Macaque SIVolc_Olive_Colobus SIVprg_Preuss_Guenon SIVrcm_Red_Capped_Mangabey SIVreg_Red_Eared_Guenon SIVsmm_Sooty_Mangabey SIVstm_Stump_Tailed_Macaque SIVsun_Sun_Tailed_Monkey SIVsyk_Sykes_Monkey SIVtal_Gabon_talapoin SIVtrc_Temmincks_Red_Colobus SIVwol_Wolfs_Mona_Monkey SIVwrc_Western_Red_Colobus pSIVmb_Mohol_Bushbaby ; END; BEGIN TAXA; TITLE Taxa2; DIMENSIONS NTAX=64; TAXLABELS Bovine_immunodeficiency_virus Caprine_arthritis_enephalitis_virus ELVgv_Malayan_Colugo ELVmpf_Ferret Equine_infectious_anaemia_virus FIVOma_Pallas_Cat FIVPleE_Lion FIVaju_Cheetah FIVccr_Spotted_Hyena FIVfca_Domestic_cat_Subtype_C FIVfca_Domestic_cat_TM2 FIVhya_Jaguarundi FIVlpa_Ocelot FIVlru_Bobcat FIVpco_Puma HIV_1_Group_M HIV_1_Group_N HIV_1_Group_O HIV_1_Group_P HIV_2_Group_A HIV_2_Group_B HIV1_Group_U Maedi_Visna_virus Mason_Pfizer_Monkey_Virus Ovine_lentivirus PSIVfdl_Fat_Tailed_Dwarf_Lemur PSIVgml_Grey_Mouse_Lemur RELIK_European_Rabbit SIVagi_Agile_Mangabey SIVagmGri_African_Green_Monkey_Grivet SIVagmSab_Afican_Green_Monkey_Sabaeus SIVagmTan_African_Green_Monkey_Tantalus SIVagmVer_White_Crowned_Mangabey SIVasc_Red_Tailed_Monkey SIVbkm_Black_Mangabey SIVblc_Black_Colobus SIVcol_Mantled_Guereza SIVcpz_Central_African_Chimpanzee SIVcpz_Eastern_Chimpanzee SIVdeb_De_Brazzas_Monkey SIVden_Dents_Mona SIVdrl_Drill SIVgor_Gorilla SIVgsn_Greater_Spot_Nosed_Monkey SIVlhoest_LHoests_Monkey SIVmac_Rhesus_Macaque SIVmnd1_Mandrill SIVmnd2_Mandrill SIVmon_Mona_Monkey SIVmus_Moustached_Guenon SIVnme_Pig_Tailed_Macaque SIVolc_Olive_Colobus SIVprg_Preuss_Guenon SIVrcm_Red_Capped_Mangabey SIVreg_Red_Eared_Guenon SIVsmm_Sooty_Mangabey SIVstm_Stump_Tailed_Macaque SIVsun_Sun_Tailed_Monkey SIVsyk_Sykes_Monkey SIVtal_Gabon_talapoin SIVtrc_Temmincks_Red_Colobus SIVwol_Wolfs_Mona_Monkey SIVwrc_Western_Red_Colobus pSIVmb_Mohol_Bushbaby ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M30359] TITLE Lentivirus_sequences_aligned_using_MAFFT; LINK TAXA = Taxa1; DIMENSIONS NCHAR=4315; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800 1810 1820 1830 1840 1850 1860 1870 1880 1890 1900 1910 1920 1930 1940 1950 1960 1970 1980 1990 2000 2010 2020 2030 2040 2050 2060 2070 2080 2090 2100 2110 2120 2130 2140 2150 2160 2170 2180 2190 2200 2210 2220 2230 2240 2250 2260 2270 2280 2290 2300 2310 2320 2330 2340 2350 2360 2370 2380 2390 2400 2410 2420 2430 2440 2450 2460 2470 2480 2490 2500 2510 2520 2530 2540 2550 2560 2570 2580 2590 2600 2610 2620 2630 2640 2650 2660 2670 2680 2690 2700 2710 2720 2730 2740 2750 2760 2770 2780 2790 2800 2810 2820 2830 2840 2850 2860 2870 2880 2890 2900 2910 2920 2930 2940 2950 2960 2970 2980 2990 3000 3010 3020 3030 3040 3050 3060 3070 3080 3090 3100 3110 3120 3130 3140 3150 3160 3170 3180 3190 3200 3210 3220 3230 3240 3250 3260 3270 3280 3290 3300 3310 3320 3330 3340 3350 3360 3370 3380 3390 3400 3410 3420 3430 3440 3450 3460 3470 3480 3490 3500 3510 3520 3530 3540 3550 3560 3570 3580 3590 3600 3610 3620 3630 3640 3650 3660 3670 3680 3690 3700 3710 3720 3730 3740 3750 3760 3770 3780 3790 3800 3810 3820 3830 3840 3850 3860 3870 3880 3890 3900 3910 3920 3930 3940 3950 3960 3970 3980 3990 4000 4010 4020 4030 4040 4050 4060 4070 4080 4090 4100 4110 4120 4130 4140 4150 4160 4170 4180 4190 4200 4210 4220 4230 4240 4250 4260 4270 4280 4290 4300 4310 4320 4330 4340 4350 4360 4370 4380 4390 4400 4410 4420 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Bovine_immunodeficiency_virus -----------------------------------------------------------------------------ACAGCAAAAATGCTACCATTGTGGCAAACCTGGCCACCAAGCAAGAAACTGCAGG------------------TCAAAAAACGGGAAGTGCTCCTCTGCCCCTTATGGGC----------AGAGGAGCCAAC---CACAGAACAATTTTCACCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACATG----------------------------------------------------------------------------------AGTTCTGTGACCCCATCTGCACCCCCT--CTTAT------------------ATTAGATTAGACAAACAGCCTTTTATAAAGGTGTTCATAGGGGGAAGATGGGTAAAAGGGTTAGTAGACACTGGAGCAGATGAGGTAGTGCTTAAGAACATACATTGGGATAGGAT-------AAAAGGGTATCCAGGGACACCAATTAAACAAATTGGGGTAAATGGAGTAAATGTGGCC-AAAAGGAAGACCCACGTAGAGTGGAGATT---------------TAAGGATAAGACTGGGATAATTGATGTCTTGTTC---TCAGATACTC------------------------CTGTAAACCTTTTTGGGAGATCTCTTCTACGTAGCATAGTGACTTGCTTCAC------CCTACTTGTTCACACAGAAA---AAATCGAACCCCTACCCGTC------AAGGTAAGGGGACCAGGGCCTAAGGTACCCCAGT-GGCCCTTGACAAAAGAAAAGTATCAGGCTCTTAAGGAAATTGTGAAAGATCTTTTAGCAGAAGGAAAAATTTCCGAAGCTGCTTGGGATAACCCATATAATACCCCAGTTTTTGTTATAAAGAAAAAGGGAACGGGAAGATGGAGGATGCTAATGGATTTTAGGGAATTAAATAAGATAACAGTTAAAGGACAAGAATTCTCTACAGGCTTACCTTACCCTCCAGGAATTAAGGAATGTGAACACTTAACTGCAATAGATATAAAAGATGCCTACTTTACTATCCCTTTACATGAGGACTTTAGACCCTTTACAGCCTTCTCTGTAGTCCCTGTAAATCGAGAAGGACCTATAGAGAGGTTCCAGTGGAATGTTCTACCACAAGGATGGGTATGTAGCCCTGCCATTTATCAGACTACCACCCAGAAGATTATAGAAAACATTAAAAAGAGTCACCCA---GATGTCATGTTGTATCAATATATGGATGATTTGTTGATTGGGTCTAAT------AGGGATGATCATAAGCAAATAGTGCAGGAAATCAGGGATAAGTTAGGATCATATGGTTTCAAGACTCCAGATGAAAAGGTCCAGGA---------AGAGAG---AGTGAAATGGATCGGTTTTGAGCTCACACCCAAGAAATGGCGTTTTCAGCCCAGGCAACTA------AAGATAAA------AAACCCACTCACAGTAAATGAATTACAGCAATTAGTAGGTAATTGTGTTTGGGTA---CAGCCAGAAGTAAAAATCCCTCT---------ATACCCCTTAACCGATCTACTGAGGGATAAGACCAATCTCCAAGAAAAGATACAACTAACACCAGAAGCCATCAAGTGTGTAGAAGAATTCAATCTAAAACTAAAAGATCCAGAATGGAAAGATAGAATAAGAGAAGGAGCAGAATTAGTCATAAAAATAC----------AGATGGTTCCTCGGGGCATAGTATTTGATCTGTTGCAAGA--------TGGAA------ATCCCATATGGGGAGGAGTAAAAGGACTAAATTATGATCATTCAAACAAAATAAAAAAGATACTTAGAACTATGAATGAGCTGAACAGAACAGTGGTAATTATGACAGGAAGAGAAGC-----------------TAGTTTCCTGCTTCCTG--------------GGTCTTCTGAAGATTGGGAAGCGGCACTCCAGAAGGAAGAAAGTCTAA------CACAAATATTCCCAGTAAAGTTT--------------------------TATAGGCACTCCTGCAGATGGAC-CTCCAT-----------ATGTGGGCCAGTAAGA---GAAAATCTAACCACCTACTATACTGACGGAGGG------AAGAAAGGGAAAACAGCTGCAGCAGTATATTGG---TGTGAAGGAAGGACTAAGTCAAAGGTATTTCCA---GGAACCAATCAACAGGCGGAATTGAAGGCCATATGCATGGCTCTCTTGG---ATGGACCACCAAAAATGAATATCATAACAGATAGTAGATACGC------------------CTATGAGGGAATGAGAGAAGAACCAGAAACG----TGGGCCAGGGAAGGAATCTGGCTGGAGATTGCCAAGATATTGCCCTTTAAGCAGTACGTGGGGGTCGGGTGGGTGCCTGCACATAAAGGG---ATAGGAGGAAATACAGAGGCAGATGAAGGAGT--------------------TAAGAAAGCCT----T-------------------------------------AGAACAGATGGC------CCCGTGTAGCCCTCCTG-----------AGGCCATTCTATTAAAACCAGGAGAAAAACAAAATCTGGAGACAGGGATCTACATGCAGGGGCTTAGACCACAAAGCTTCCTCCCAAGAGCAGACTTACCAGTAGCCA---------------TCACAGGAACCATGGTAGATTCAGAGCT-------------ACAGCTACAGCTACTTAACATAGGAACTGAGCATATAAGAATCCAAAAAGATG------------------------------------------------------------------------------------------------------------AGGTCTTCATGAC-------------CTGTTTCCTAGAAAATATCCCCTCAGCCACT-GAAGATCATGA-GAGATGGCATACCTCACCAGACATTTTGGTTAGGCAGTTCCATCTCCCTAAGAGAATAGCTAAAGAGATAGTAGCCAGATGCCAAGAATGTAAAAGGAC-----------AACCACTA----GCCCAGTCAGAGGAACAAACCCCAGAGGTCGA------------TTCTTATGGCAGATGGACAATACTCACTGGAATAAA------------ACAATTATTTGGGTAGCAGTAGAGACAAATTCAGGATTAGTGGAAGCTCAGGTGATCCCTGAAGAAACAGCACTACAA---GTAGCTCTCTGCATTTTACAGCTAATCCAGA---GATATACAGTTCTTCACTTACATAGTGACAACGGGCCGTGCTTTACTGCACACAGGATAGAAAATCTATGTAAGTATCTGGGGATCACAAAAACTACGGGAATACCCTACAACCCACAATCCCAGGGAGTTGTAGAAAGAGCCCACAGAGATCTAAAAGACAGATTGGCAGCTTATCAGGGAGATTGTGAAACCGTAGAAGCAGCCCTTAGCCTC---------------GCATTAGTTTCTTTAAAT---AAAAAAAGAGGGGGAATAGGGGGCCATACACCATATGAAATATACCTAGAATCAGAACATACCAAATACCAAGACCAACTAGAAC------AACAATTTTCAAAACAA---AAAATTGAAAAGTGGTGTTAC---------GTAAGGAACAGAAGAAA-----GGAATGGAAAGGACCCTACAAAGTGTTGTGGGACGGAGACGGGG-CAGCAGTAATAGAG------GAAGAGGGAAAAACAGCCTTATATCCACACCGTCATATGCGCTTCATCCCCCCCCCAGATTCAGATAT--------------------CCAAGATGGGAGT-------TCGTGA-------------------------------------------------------------------------------------------------- Caprine_arthritis_enephalitis_virus -------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTCAC----------AACTGTGGAA-------------AGAGAGGAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGCAAAAAGAATGCA---------------GAGGAAAGA--------GAGACATAAGGGGAAAACAGCAGGGAAACGGGAGGAGG------------------------------------GGGATACGTGTGGTGCCGTCCGCTCCT--CCTAT------------------GGAATAACTTCAGCACCACCTATGGTTCAGGTCCGCATAGGTTCCCAGCAGAGGAACTTGTTATTTGATACCGGGGCGGACCGAACTATAGTTAGATGGCATGAGGGCTCG----------------GGAAACCCAGCCGGAAGGATAAAACTGCAAGGAATAGGAGGAATAGTAGAAGGA-GAAAAATGGAATAATGTAGAATTAGAATA---------------TAAAGGAGAAACAAGAAAGGGAACAATAGTAGTG---TTACCACAAAGTC---------------------CAGTAGAAGTATTAGGACGAGATAACATGGCCCGATTTGGAATAAAGATAAT------AATGGCAAATTTAGAGGAAAAAAGAATCCCAATTACAAAAGTAAAATTGAAAGAGGGATGTACGGGTCCACATGTCCCACAAT-GGCCATTAACAGAAGAGAAATTAAAAGGTCTAACAGAAATCATAGATAAATTAGTGGAAGAAGGAAAACTAGGAAAGGCACCCCCACATTGGACATGTAATACTCCAATCTTTTGCATAAAAAAGAAATCAGG---GAAGTGGAGAATGTTAATAGATTTCAGAGAATTGAACAAACAGACAGAAGATTTAACAGAAGCGCAGTTAGGACTCCCGCATCCGGGAGGACTACAAAAGAAAAAACATGTTACAATATTGGACATAGGAGATGCATATTTTACTATACCCCTATATGAACCATATCGAGAGTACACATGTTTTACTCTATTAAGTCCTAATAATCTAGGACCATGTAAAAGATACTATTGGAAAGTGCTGCCACAAGGTTGGAAATTGAGTCCATCTGTATATCAATTTACTATGCAGGAGATCTTAGAGGATTGGATACAGCAGCATCCA---GAAATTCAATTTGGCATATATATGGATGATATTTACATAGGAAGTGATTTAGAAATTAAAAAGCATAGAGAAATAGTGAAAGATTTAGCCAATTATATTGCCCAATATGGATTCACTCTGCCAGAAGAGAAGAGACAAAA---------GGGATATCCAGCAAAATGGCTAGGATTTGAACTACACCCGCAGACCTGGAAATTTCAGAAGCATACATTA------CCTGAATTAACAAAGGGAACAATAACATTAAATAAATTACAGAAATTAGTAGGAGAATTAGTATGG---AGACAATCCATAATTGGGAAAAGCAT---------TCCTAACATTCTGAAATTAATGGAAGGAGATAGAGAATTACAAAGTGAAAGAAAAATTGAAGAAGTACATGTGAAAGAATGGGAAGCATGTAGGAAAAAATTAGAAGAAA---TGGAAGGAAATTATTATAATAAAGACAAAGATGTCTATGGACAATT---GGCTTGGGGAGACAAAGCTATAGAATATATAGTGTATCAGGAGAAAGG---------GAAAC------CATTATGGGTAA------ATGTGGTTCACAATATAAAGAACCTAAGCATCCCGCAACAGGTTATTAAAGCAGCGCAAAAATTAACCCAAGAAGTCATCATTAGGACAGGAAAAATACC-----------------ATGGATATTGTTGCCAG--------------GGAAAGAAGAAGATTGGAGACTAGAATTGC---AATTAGGGAACATCA------CATGGATGCCAAAATTTTGGTCCTGTTATCGAGGACATACAAG--------ATGGAGAAAAAGAAATATAAT------------------AGAAGAAGTAGT---------AGAAGGGCCTACATATTATACAGATGGAGGA------AAAAAGAATAAAGTAGGAAGTCTAGGGTTCATAGTATCAACAGGGGAA---AAATTTAGAAAGCATGAAGAGGGCACAAACCAGCAACTAGAATTAAGAGCCATAGAGGAAGCTCTAAAAC---AAGGGCCTCAAACAATGAATTTAGTAACAGATAGTAGATATGC------------------ATTTGAATTTTTATTAAGAAATTGGGATGAAGAA-GTAATAAAGAATCCAATTCAAGCAAGAATTATGGAAATTGCCCACAAGAAAGATAGGATAGGAGTGCATTGGGTGCCAGGACATAAAGGG---ATTCCCCAAAATGAAGAAATAGACAAATATATTTCGGAAA------TATTTCTTGCAAA---------------------AGAAGGAGAAGGAATTCTCCCAAAAAGAGAAGAGGAT------GCAGGGTATGATTTAATATGCCCAG---AAGAGGTTACCATAGAGCCAGGACAAGTGAAATGCATCCCCATAGAGCTAAGATTAAATTTAAAGAAATCACAATGGGCTATGATTGCTACAAAAAGCAGCATGGCTGCCAAAGGAGTGTTCACACAAGGAGGAATCATAGACTCAGGATA-TCAGGGACAAATACAGGTAATAATGTATAATAGCAATAAAATAGCAGTAGTCATACCCCAAGGGAGAAAATTTGCACAATTAATATTAATGGATAAAAAGCATGGAAAATTGGAACCCT---GGGGGGAAAGCAGAAAAACAGAAAGGGGAGAAAAAGGATTTGGGTCTACAGGAAT----------------------GTATTGGATAGAAAATATTCCTCTGGCAGAG-GAAGACCACAC-AAAATGGCATCAAGATGCCCGATCATTGCATCTAGAATTTGAAATTCCAAGAACAGCAGCAGAAGACATAGTAAATCAATGTGAAATATGCAAAGAAG------------CGAGGACACCTGCAGTAATTAGAGGCGGAAACAAAAGGGGGGTA------------AATCATTGGCAAGTGGATTATACCCATTATGAAAAT------------ATCATACTATTAGTATGGGTAGAAACAAATTCAGGACTAATATATGCAGAAAAAGTAAAAGGAGAATCAGGGCAAGAA---TTCAGAATAAAAGTGATGCATTGGTATGCAT---TATTTGGTCCAGAGTCATTGCAGTCAGACAATGGACCTGCATTTGCAGCAGAGCCCACACAGCTGTTAATGCAATACCTAGGAGTAAAACACACAACAGGCATACCTTGGAATCCACAGTCTCAGGCTATAGTAGAAAGGGCACATCAACTATTGAAAAGCACTTTAAAGAAGTTCCAGCCACAATTTGTCGCTGTAGAATCAGCCATAGCAGCA---------------GCCCTAGTCGCCATAAATATAAAAAGAAAGGGTGGGCTGGGGACAAGCCCTATGGATATTTTTATATATAATAAAGAACAGAAAAGAATAAATAATAAATATAATAAAA---------------ATTCT---CAAAAAATTCAATTCTGTTATTACAGAATAAGGAAAAGAGGACATCA---GGAGAGTGGAAAGGACCAACCCAGGTACTGTGGAAAGGGGAAGGAGCCAATTGTGGTAAAGGATATAGAAAGTGAAAAGTATTTAGTAATACCTTACAAAGATGCAAAATTCATCCCGC------------------------------------CACCAACAAAAGA-------AAAGGAATAA---------------------------------------------------------------------------------------------- ELVgv_Malayan_Colugo -------------------------------------------------------------------------------------------------------------------------------AAAGGGACACATTGCCAGGTTATGCAGAACAAAA-------------AACAGGAAAGCAGGCTCAGG-ACAGGGAGCCC----------AGGCATTGGTATCA-------------------------------------------------------------------CAGCCTGTTCTGCCATCAGCACC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTG---------------------------GAGGAAGAGACAACCAAGTCACTTTAC--CCCAA---------------ATTACCAGTTTGCAACAAAGACCAATAACATTGATACAGTGTGCAGGGACAGAGATTAAGGTTTTATTAGATACAGGAGCAGATATTTCAATTTGGG------CAAAACCACCCCC----------AATAGGAAGAAATATAGGCCAGCAATTTGTAATGGGAATAGGGGGAAGTCAAACAGGA-ATTAAATATGATCAAGTTAAAATGACATG---------------GAATAATAAAACAATTTTAGGTGAAGTAGTAGTG---TGTCCCACAC------------------------CTATAAATTTATTAGGGAGAGATAATTTAAGCAAATTTGGAGTACACTTGGT------GTGTACAACGTTAAATCAAC---AGTTAACACCAGTGAAATTTAAATTGTTGCCAGGATTTAGAGGACCACAGGTTAAGCAAT-GGCCATTATCTGAAGAAAAAATTAAAGCATTACAAGAAATTTGTGCTGAATTAGAACAGGAAAAAAAGATACAAAGAGTAGGTCCAGAAAATCCTTATAATACACCTGTATTTTTAATAAAAAAGAAATCTGG---TAAGTGGAGGATGCTTATGGATTTTAGGGAATTAAACAAAGGAATAGATGTAGGAACAGAAACTCAGGTAGGTTTTCCTCATCCAGCAGGGTTTTCACAGGTAAAGCACTTTACTGTTATTGATATAAAAGATGCTTATTTCACCATCCCATTAGATGAAGAAATAAGTGAGTTAACAGCATTTACAGTACCTCAAAAGAATAATGCAGGGCCAGGTATAAGATTTAAATGGAAAGTTTTACCACAAGGGTTGATAGGGTCTCCAAAAGGGTATCAATGTACTTTAGAAAAAATAATAACACCATGGAAAGCAAAACACCCT---GGCATAACATGTTATGTATATATGGATGATATTTTAATAGGAACAAATTATACAGCTCTCAAATATAAACAAGTAGTCAAAGAGTTACAAGAGGAATTTAAAAAGTGGGGATTTGAAACCCCACAAGATAAAATACAGAATAGTGATGGGGACAAAGCAGTAAAATATTTAGGATATATTTTAGAACCCCAAACGTGGAAACCACATAGCTATCAGCTA------TTGGATAG------TAAACCAAAAACATTAAATAATGTTCAACGAGTATTAGGAAGAATTAATTGGATAAAACAAATATATCCTAAGATACAAAC---------AGAAAACATTCAGAAGTTATTAACAGGAGATCAAAACATATTAAGTAAAAGATCATGGACTAAAAAAACTCAATATGAGGTAGATGTAATACAACAAATGTTAACACAGCAGGAAGGAATGCCTTATCATCAAGAAAAGGAACTAGTTAGTCTTAGTATTGTGTGGAATCAAGTAGCTCAAGGAGCT------GTCCATCAAAAGCATA------------AGG------TGCTCTGGTGGGGATACGGGACTAGCAAAGACAGAAAAATAAAAACTAAAGCAAGAAAATGTGTGGCTTTAGCAAATCGTATGGTTTCAGAAATAATCATACTATTGGGAAAAGTTCCA--------------GATGAAGTTTGGTTGCACA--------------TAGAAAAGGCTACTTTTGAGTATTTATTACAAGAAGGATTAGAGGGAACAGAAATTTGGTTATTAAATTGCAAATTTGGTATGGCACCTAACAAAATTTTTGATAAAAGTGAATGTTTAAGTTATCCTTGTATA--------TGGAAAAGTGCTGTTCCT---GTCACAGGCCCTACAATTTATATAGATGGATCTAGAAAAAAGGGACAGCCAGCTCGTAGTGCTATATG---GGAGAATGCAAATAATAATAAAGTAACAGAATTTGAG---GGAACAGCTCAGCAAGCAGAAGTTAGGGCATTTTTATTAGCATTACAAT---TAGAATATAATCAAATGAACATAGTTACAGACAGTAAATATTT------------------ATGGACATGTATTAAGTTAATGTCTGACTATGCG-TGGAAAGAGGAAAATCCCATTTGGCAAGAAATCTGGGAATTATTACAAACAAAGAAAATATATTTACAATGGGTGCCAGGACATCAAGGG---GTGCCAGGGAATGAAGAAGCTGACAATTTAGCCC------------------AGGGAAATGT------AGTTCTTACTGCAGAAGAGGAGGACTTACTGCCACAGCAGTCAGAACTTTGTTTCCCTGGGTGGCAAATAAAAGCAGCCA---GAGATTGTTATGTGGCAGCCCAGGAAAAAAGACAAATATTTACAGGAATACACCTCCAGTTGGATGAAATGCAAATAGCACAGATGCAATTAAATTATGAATTAGCTATAAAAGGATTGTTATTATTACAGTCAACTGTTAAAGAAAGTTA-TTCAACAGAATTAATATTACAAGTTGTAAATTTTACTAAAAAGGGAATAAATATTCAAAAGGGTGATCCAGTTGTTATTTTATATATTATAGCTGCT-------------------------------------------------GAAGAGATGGGGGAAGCAAAGTTACAAAAGTCAGCTCCAGATGACATGGCCTGTTTCACCTCAGAAACTTTTCAGGAAGCAGAA-CAGTGGCATGA-TGTAACACATGCAAACCCCCGACAATTAGCAAGAAAGTTTCATCTTCCTTTAGGATTAGCAAAGCATATTACACAGTTATGCAAAGACTGCCAACAGCAGGATACTGCTACAGGAGAG---------GGATATAATCAGTTAAAAAACCAAGAA------------GGTGTTTGGCAGATGGATGTTACACATATGTTTGAGTTAGGACTTTATAAATATGTGTATGTAGCAGTTGACATACAAACAGGAATGATATGGGTTAGTCCACAAAAGGGAGAAACAGCAAAACAT---ACACAAACAGCTCTGCTTCAGATCATTCATATGGCAGGGCTCCCAAAGGAAATCCAAAGTGATAATGGACCAGGTTTTGTAGCAGATAGAGTACAAGTGATGTGTAAACAATTAGGGATTAAATGGCATCATGGCATTCCATACCATCCTCAGAGTCAGGGAAAAGTAGAAGGTACACATAAATTAATTAAACAACACTTCAAAAAGGTGAAAGAGTTATTTGAAGACCCCATTAATGCTCTGTTGTGG---------------ACAGTATTTTGCCTCAATTTTGAGAAGAGGGGTGGAGATGGGTATACAAGAGCAGAGGCTTGGGTGG----------AGCAACAGAATTTTAAAAATCAGTTAGAAACA-TGTAAGCATATGCAAACTT---TAACTAATTCCTGTAAATTTTTGTATA---AGGATCCCAAGTCACCTCGAACAGGGTGGAGAGGCCCAGGCACTCTGCAGTGGGAAGGAGCAGGCA-TCAGAGTATTAGAACT---TACAACTGGAGAGGTAAAAGTAGTTCCTAAACATCTAACAAAAAGAATTTTTT-----CA--------------------------------------------------------------------------------------------------------------------------------------------------------- ELVmpf_Ferret --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGGAAGAGATATTTTAAAGAAACTAGGGATAAAATTAAT------ATGTGCTAATTTATCAGATA---AGATTAGGCCCTACAAGGTACAACTTAGAGACCCTACTAAGGGACCCCAAATAAAACAAT-GGCCCCTTAGCAGGGATAAATTAGAGGGAATTACAGAAATCATAGAGAAGTTATTAAAGGATGGGAAAATAGAAGAAGCAGCATGGGATAACCCTTGGAATACACCCATATTTTGCATAAGGAAGAAGTCAGG---AAAATACAGGGTTTTAATAGATTTCAGGGAACTTAATAAAATGACTTTAAGAGGGGAAGAGATACAACTGGGAATTCCCTTCCCTGCAGGGTTACCAGAAAAAAGGTATATAACAGTTCTAGATATAGCAGATGCTTACTTTACTATCCCATTGGATCCTGATTTTAGGCCTTACATGGCATTTACCCTACCCTCCTTGAACAATCAAGGACCAGCCAGAAGGTTCCAATGGTGCTGTCTCCCACAAGGCTGGAGTCACAGCCCTGCTATATATCAAGGCACCCTTAGAGATATTCTCTTGCCCTGGAGAGAACAATATCCT---GAGATATTATTATACCAGTACATGGATGATTTACTAATAGGATCATATTTAAGCAAAAAGGAGCACCAGAAGGTAGTGCAAAATCTTAGAGACATGCTATTTCAATGGGGGTTTGAGACCCCAGAGGAGAAACTACAGGA---------AGCTCCCCCATATAATTGGATGGGATATGAATTAGAACCTAAAACCTGGAAATTACAAAAATGGGAACTG------GAAATCCC------AGAAAAACCAACTTTAAACCAACTGCAGAAGATATTAGGGAAGATCAATTGGGCTAGCTCCATGATCCCAGGTTTAAGGAT---------CAAAAACTTATGTAAGTTAATGAGAGGCAATATGCAATTAGACTCCCATAGGGAATGGACAACAGAGGCTTTAGAGGAAGTAAAATATGCCCAACAAAAGATAGCAGAAAATCAAGGAAATCATTACTATATACCAGAAAGGGAGGTTTATTGCAAAAT---TATAAAAAATTCTCAGGAAATAAATTATGGAATATATCAGGAAGAGCAAGGGAAAAAGCAGA------TGCTATGGGTTGGAAGACAATCATTAAAGAGGGATATTGGAAAATCTATCCTAGATAAATTGGCCATAGCTATTCAGAATATTTGCACAGAATGCAAAATCAGGTTAGGGGTAGAACC-----------------CATTATTCTACTCCCCA--------------TGGAAAAAAGGACCTTAGAAAATTGGTACAGCCAACAAAATTATCTTC------GCTGGTTTCCCCATGTCAAACTAATAAATGCTGATTTAATGTTT-----AAGGAAGTCCTAGCAAACCAGAG------------------TAATGATCCTTTAGA------GGATGTGGAAGTCTTCTATACAGATGGAGGG------AGAAAGGAACAACAAACAAAGGCAGGGTATGTTACTTCCACAGGAAAAAGTAGAATAGAACATATAGTA---GGATCAAATCAGCAAGCAGAAAAATATGCAATAAAAATGGCCTTTCAAG---ATTCAGGTCCACAAGTTAATATCATCACAGATAGCAAGTACTG------------------CTTCTCCATTTTAAGAGCTAGACCAGACCCAGAA-ACCATTGAAGATAATTTATGGAAGGAGATAATTTCATTAGCTATGAAAAAGGACATTTGGTATATAGGATGGGTACCAGGACATAAGGGG---GTACCTGGAAACACAGAAGCAGACCAATTAGTATC------------------------------------TATTGTTGTGGAGGGAGAGAATGTTAAGGACAAAAGACCAGAAGAT------GTAGGCTATGATCTATGTACCCCAA---AAGATTTATTTCTATTACCTAGAGAAATTATAAAACTAGACATAGAAACAAAAATAGAGATCCCAGAAGGACACTGGGGTCGGATAACCCAAAAATCATCCCTAGGCTTAAAAGGCCTACAAATCCAGGGAAAAACTATAGATCAAGGGTT-TAGAGGTAATATTCAAGTTCTGTTATTAAATGGAGGAAGGAGGAAAATTTTATTACAATCAGGACAAAAAATAGCACAATTAATCATCTTACCCTTATTTCATGAGCCTCTTAAACAAG---GCACAGTAGATAAATATACAGAAAGGGGGCAAAATGGGTTTGGCAGCACAGGTGTCTTTTT----------------CAACTGGGTAGACAACCTGAGTCAAATAAAG-GAAGAACATGA-AAAATGGCATAATAATTGGAGGGATTTAAAATTGAAATATGGTCTCCCTACCACAGTGGCAAAAGAAATAATTAAACAATGTCCAAACTGCATTAAAG------------GGGCAAAC------CCAATAAGAGGCATCAACCCCGTAGACTCC------------CAACTGTGGCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------------------------------------------------------------------------------------- Equine_infectious_anaemia_virus -----------------------------------------------------------------------------------------------------------------------------------------ATGCAGAAGTGTTCCAAAAAACGG-------------GAAGCAAGGGGCT--------CAAGGGAGGCCCC-----AGAAACAAACTTTCCCGATACAACAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAGTCAGCACAACAAATCTGTTGTACAAGAGACTC-------CT----CAGACTCAAAATCTGTACCCAGATCTGAGCGAAATAAAAAAGGAATACAATGTCAAG------------------------------------GAGAAGGATCAAGTAGAGGATCTCAAC--CTGGACAGTTTGTGGGAGTAACATATAATCTAGAGAAAAGGCCTACTACAATAGTATTAATTAATGATACTCCCTTAAATGTACTGTTAGACACAGGAGCAGATACTTCAGTGTTGACTACTGCACATTATAATAGGTTAAAATATAGA-GGGAGAAAATATCAAGGGACGGGAATAATAGGAGTGGGAGGA---AATGTGGAA-ACATTTTCTACGCCTGTGACTATAAAGAA---------------AAAGGGTAGACACATTAAGACAAGAATGCTAGTG---GCAGATATTC------------------------CAGTGACTATTTTGGGACGAGATATTCTTCAGGACTTAGGTGCAAAATTGGT------TTTGGCACAGCTCTCCAAGG---AAATAAAATTTAGAAAAATAGAGTTAAAAGAGGGCACAATGGGGCCAAAAATTCCTCAAT-GGCCACTCACTAAGGAGAAACTAGAAGGGGCCAAAGAGATAGTCCAAAGACTATTGTCAGAGGGAAAAATATCAGAAGCTAGTGACAATAATCCTTATAATTCACCCATATTTGTAATAAAAAAGAGGTCTGG---CAAATGGAGGTTATTACAAGATCTGAGAGAATTAAACAAAACAGTACAAGTAGGAACGGAAATATCCAGAGGATTGCCTCACCCGGGAGGATTAATTAAATGTAAACACATGACTGTATTAGATATTGGAGATGCATATTTCACTATACCCTTAGATCCAGAGTTTAGACCATATACAGCTTTCACTATTCCCTCCATTAATCATCAAGAACCAGATAAAAGATATGTGTGGAAATGTTTACCACAAGGATTCGTGTTGAGCCCATATATATATCAGAAAACATTACAGGAAATTTTACAACCTTTTAGGGAAAGATATCCT---GAAGTACAATTGTATCAATATATGGATGATTTGTTCATGGGAAGTAATGGTTCTAAAAAACAACACAAAGAGTTAATCATAGAATTAAGGGCGATCTTACTGGAAAAGGGTTTTGAGACACCAGATGATAAATTACAAGA---------AGTGCCACCTTATAGCTGGCTAGGTTATCAACTTTGTCCTGAAAATTGGAAAGTACAAAAAATGCAATTA------GACATGGT------AAAGAATCCAACCCTTAATGATGTGCAAAAATTAATGGGGAATATAACATGGATGAGCTCAGGGATCCCAGGGTTGACAGT---------AAAACACATTGCAGCTACTACTAAGGGATGTTTAGAGTTGAATCAAAAAGTAATTTGGACGGAAGAGGCACAAAAAGAGTTAGAAGAAAATAATGAGAAGATTAAAAATGCTCAAGGGTTACAATATTATAATCCAGAAGAAGAAATGTTATGTGAGGTTGAAATTACAAAAAATTATGAGGCAACTTATGTTATAAAACAATCACAAG------------GAA------TCCTATGGGCAGGTAAAAAGATTATGAAGGCTAATAAGGGATGGTCAACAGTAAAAAATTTAATGTTATTGTTGCAACATGTGGCAACAGAAAGTATTACTAGAGTAGGAAAATGTCC-----------------AACGTTTAAGGTACCAT--------------TTACCAAAGAGCAAGTAATGTGGGAAATGCAAAAAGGATGGTATTATT------CTTGGCTCCCAGAAATAGTATATACACATCAAGTAGTTCATGA--------TGATTGGAGAATGAAATTGGT------------------AGAAGAACCTACATC------AGGAATAACAATA---TACACTGATGGGGGA------AAACAAAATGGAGAAGGAATAGCAGCTTATGTGACCAGTAATGGGAGAACTAAACAGAAAAGGTTAGGACCTGTCACTCATCAAGTTGCTGAAAGAATGGCAATACAAATGGCATTAGAGGATACCAGAGATAAACAAGTAAATATAGTAACTGATAGTTATTATTG------------------TTGGAAAAATATTACAGAAGGATTAGGTTTA----GAAGGACCACAAAGTCCTTGGTGGCCTATAATACAAAATATACGAGAAAAAGAGATAGTTTATTTTGCTTGGGTACCTGGTCACAAAGGG---ATATATGGTAATCAATTGGCAGATGAAGCCGC--------A----A------AAATAAAAGAAGAAATCATGCTAGCATACCAAGGCACACAAATTAAAGAGAAAAGAGATGAAGAT------GCAGGGTTTGACTTATGTGTTCCTT---ATGACATCATGATACCTGTATCTGACACAAAAATCATACCCACAGATGTAAAAATTCAAGTTCCTCCTAATAGCTTTGGATGGGTCACTGGGAAATCATCAATGGCAAAACAGGGGTTATTAATTAATGGAGGAATAATTGATGAAGGATA-TACAGGAGAAATACAAGTGATATGTACTAATATTGGAAAAAGTAATATTAAATTAATAGAGGGACAAAAATTTGCACAATTAATTATACTACAGCATCACTCAAATTCCAGACAGCCTT---GGGATGAAAATAAAATATCTCAGAGAGGGGATAAAGGATTTGGAAGTACAGGAGT----------------------ATTCTGGGTAGAAAATATTCAGGAAGCACAA-GATGAACATGA-GAATTGGCATACATCACCAAAGATATTGGCAAGAAATTATAAGATACCATTGACTGTAGCAAAACAGATAACTCAAGAATGTCCTCATTGCACTAAGC------------AAGGATCA------GGACCTGCAGGTTGTGTCATGAGATCTCCT------------AATCATTGGCAGGCAGATTGCACACATTTGGACAAT------------AAGATAATATTGACTTTTGTAGAGTCAAATTCAGGATACATACATGCTACATTATTGTCAAAAGAAAATGCATTATGT---ACTTCATTGGCTATTTTAGAATGGGCAAGAT---TGTTTTCACCAAAGTCCTTACACACAGATAACGGCACTAATTTTGTGGCAGAACCAGTTGTAAATTTGTTGAAGTTCCTAAAGATAGCACATACCACAGGAATACCATATCATCCAGAAAGTCAGGGTATTGTAGAAAGGGCAAATAGGACCTTGAAAGAGAAGATTCAAAGTCATAGAGACAACACTCAAACACTGGAGGCAGCTTTACAACTT---------------GCTCTCATTACTTGTAAC---AAAGGGAGGGAAAGTATGGGAGGACAGACACCATGGGAAGTATTTATCACTAATCAAGCACAAGTAATACATGAGAAACTTTTACTAC---AGCAAGCACAATCCTCC---AAAAAATTTTG---TTTTTAC---------AAAATCCCTGGTGAACA-----TGATTGGAAGGGACCTACTAGGGTGCTGTGGAAGGGTGATGGTG-CAGTAGTAGTTAATGA---TGAAGGAAAGGGAATAATTGCTGTACCATTAACCAGGACTAAGTTACTAATA-----------------------------------------AAACCAAAT------------------------------------------------------------------------------------------TGA------------------ FIVOma_Pallas_Cat -----------------------------------------------------------------------------------------------ATGTGGCAAAGCAGGCCATATTGCAACAGATTGTTGGGACATGCAGGGAAAGCAGCAGGGAAACTG-------------GCAGAAGGGGAGA----------GCTGCTGCCCC----TATCAAACAAGTGCAG---------------------------------------------------------------------CA---ATTTCAAACAGCAGTATCAACAACTCAGAATCAGCAA------------------------------------------------------CAATGTCAATTAATACAGCCTTCGGCTCCTCCAATGGAGTCCCTTATGGACATCTAAA-------------------------------------------------------------------------------------------------------------------------------------------------------GAGAGATATAGAATTAATACATAGACCAAGAATTTTGATCTATGTAAATGGGATTCCTATAAGATTTTTAATGGATACAGGAGCAGATATAACTATAATGAATGCAGAAGATTTTAATATATT-------AAATTCAATCCCAGATGGAATACAAACAATGATAGGAGTAGGAGGAGGAAAAAGAGGT-AGAAAATTTAGACGAGTACATTTAGAAAT---------------AAGAGATCCTAATCATAGAGCTCAATGTTTATTT---GGAAATATGTGTATCTTAGATGACAATAGTTTAACAGAACCTCTGCTAGGGAGAGATAATATGGTTAGATTTGGAGCAAAGTTGGT------AATGGCAAATATTTCAAATA---AAATTCCTATAGTAAAAGTGAAAATGAAAGATCCTAGCAAAGGACCAAAAATTAAGCAAT-GGCCTCTATCAAAAGAAAAGATAGAAGCATTAACAGAAATAGTTTATAGATTGGAAAAAGAAGGGAAAGTAAAAAGGGCAGATCCAAATAATCCTTGGAATACCCCTATTTTCTGTATAAAAAAGAAATCAGG---GAAGTGGAGAATGTTAATAGATTTTAGAACTCTGAATGAATTAACAGAAAAAGGTGCAGAAGTTCAGTTGGGACTCCCTCATCCAGCAGGATTACAAGAAAGGAAACAAGTAACAGTATTAGATATTGCAGATGCATATTTTACTATACCATTAGACCCAGACTATGCACCATATACTGCCTTTACTCTGCCCAAAATAAATAATTCAGGTCCAGGAGAAAGATTTGTATGGTGTGGTTTACCTCAAGGATGGGTATTAAGTCCCTTAATTTATCAGAGTACATTAAACAATATTTTAAAACCATTTAGAGAACAGCATCCA---GAAATAGATTTATACCAATATATGGATGATATATATATAGGATCAGATTTAGGAAAGAAGGAGCATAAACAAATTGTAGAGGAATTAAGGAAATTATTATTATGGTGGGGATTTGAGACGCCAGAAGACAAATTACAGGA---------GCAACCACCTTATAAATGGATGGGATATGAATTATATCCTCGGAAATGGACTATACAAACAAAAGAATTA------ATAATACC------AGAAGAACCAACTCTTAATGAGTTACAGAAGTTAGTAGGAATAATAAATTGGTCATCTCAAATAATTCCTGGATTAAGAAT---------TAAGGCTTTAACTAATATGATGAAAGGAAATCAAGCTTTAGATTCAAAAAGAAGGTGGACAGAAGAGGCTAAGAAAGAGGCAGAAGAGGCAAAATTGGCAATAGAACAACACACACAATTAGGATATTATGATCCTCAACAACAATTACATGCAAAATTGAGTATAGTGGGTCCACATTGTATAGGGTACCAAGTTTATCAAAAAGGGT---CTCCAGATAAAA------TATTATGGTATGGAAAAATGAATAGACAAAAGAAAAAAGCAGAAAATACTTGCGACATAGCCTTAAGAGCTATATATAAGATCAGGGAAGAATCAATAGTAAGGTTAGGAAAAGAACC-----------------TATTTATGAAATACCAT--------------GTTCTAGAGAAGCATGGGAATCAAATTTGATTAATACTCCTTATTTAA---AAGCTTGCCCACCACAAGTAGAGTATATTCATGCAGCAATAATGATA-----CAGAGGTCTTTAAGTATGATAAA------------------AGAAGAACCAATTAG------AGGTGCAGAAACATGGTATATTGATGGAGGA---AGGAAGAAGGGACAATCAGCAAAGGCGGCATATTGGACTGATAAAGGAAAATGGGAAGTAATGCAAATAGAA---GGGAGTAATCAAAGAGCAGAGGTAATGGCCCTATTAATGGCATTACGAT---CAGGGGGAGAAGAAATGAATATTGTAACAGATTCTCAATATAT------------------CCTAAATATTTTGAGACAAAAACCAGAT----------TTGATGGAGGGATTATGGCAAGAAATATTGGAAGAAATAGAAAAGAAGGTAGCAATTTTTATAGATTGGGTACCAGGTCATAAAGGC---ATTCCTGGGAATACAGAAGTAGATAACCTATG------------------TCAAACAAT------------GATGATAATATCAGGAAATGGAATATTAGATAAAGGAGAAGAGGAC------GCAGGATATGATTTGCTTGCAGAAC---AAGACATACATTTAATGCCAGGAGAAGTAAGAATAGTCCCTACAGGAGTAAGATTAATGCTGCCAAAAGGACATTGGGGAATGGTAGTAGGAAAATCTTCAATTGCAAAGCAAGGATTGGATGTTCTTGGAGGAGTAATAGATGAAGGATA-CAGAGGGGAAATAGGTGTAATTATGATAAATTTACAGAAAAGATCTATTACTTTAAAAGAAAAGCAAAAGGTAGCACAATTAATAATCATACCTTGTAAACATGAAGAATTGAAACAAG---GGGAAATAGAATTAAATTCAGAAAGAGGAGAAAAAGGGTATGGATCAACAGGTGCATTTGC----------------ATCTTGGATGAATAACATTGAAGAGGCAGAA-ATCAACCATGA-AAAATTTCATTCAGATCCAGAATTTTTAAGGACTGAATTTGGGCTTCCCAAACAAGTTGCAGAAGAAATAAAAAGAAAATGTCCTCTATGTATAGTGC------------AAGGGGAA------CAAGTAATGGGAAAATTAAAAGTAGGACCA------------GGAATATGGCAAATTGATTGTACTCATTTAGAAGGA------------AAGATTATACTGGTCGCAGTAAACACAGAATCAGGATACATTTGGGCAAGAATAATTCCTCAAGAGACAGCAGATATG---ACAGTAAAATATCTATTACAATTAATCTCGG---AGCATCATGTGACTGAATTACAATCAGATAATGGACCAAATTTTAATAATGCAAAAGTAGAAGGCATGACAGGATTTTTGGGAATAAAACATAAATATGGAATTCCAGGAAACCCTCAATCACAAGCCTTGGTAGAAAATACCAATAGAATGTTAAAAGAATGGATAAAGAAATTTAGAGGGGAAGTAACTACTTTGGATGCAGCATTGGCACTT---------------GCACTTTATGCTCTTAACTTTAAACAAAGGGGTAGAATAGGGAGAATATCCCCATATGAGTTACTTATACAGCAAGAATCAGACAGAATAAGAGATTACTTTTCTAAAA---TACCA-GCAAATAATATA--AAAAATTCTTGGATTTATTAT---------AAGGATAGAAGAGATAA-----AGAATGGAAGGGTCCAACACAGGTAGAATATTGGGGACAAGGAG-CAGTTTTAATAAAACA---TCCAGAGCATGGGTATATGCTCATCCCTAGGAGACACATAAGGAGAGTTCCA------GAACCCTGTACTC------------------TTCCAGAAGTGGA-----------ATGA------------------------------------------------------------------------------------------------ FIVPleE_Lion -----------------------------------------------------------------------------------------------TTGTGGAAAAACAGGACATATATCTACAGATTGTTGGAATATAAAAGGGAAGCCACAGGGAAACTG-------------GCAGCAGGGGAGA----------GCTGCTGCCCC----TGCCAAACAAGTGCAG---------------------------------------------------------------------CA---ATTTCAGACAGCTGTACCAATGGT------ACCTCAG------------------------------------------------------CAGACTGCACCTGTGCAGCCATCAGCACCACCAATGGAATCCCTATTGGAAATGTAAA-------------------------------------------------------------------------------------------------------------------------------------------------------AAGGGATATTTACTTAAGTAATAGACCAAAATTGTTAATTTATGTAAATGGGATTCCCATAAAATTCTTAATGGATACAGGGGCTGATATTACTATAATGAATGCTGAGGATTTTAATATTTT-------AAACTCAATACCAGATGGCATTCAGACAATGATCGGTGTAGGGGGAAGAAGAACAGGA-AGAAAATTTAGAAGAGTACATTTAGAAAT---------------CAGAGATCCTGATTTTAAGCCTCAATGTATATTT---GGAAATATGTGTATATTAGATGATAATAGTTTGACAGAACCATTGTTGGGAAGAGATAATATGACAAGGTTTGGAGCAAAATTAGT------AATGGCACAAATATCAGATA---AATTACCTATAGTAAAGGTAAAGATGAAAGATCCAAGTAAAGGTCCTCAAATAAAGCAAT-GGCCTCTATCGAGAGAAAAGATAGAAGCATTAACAGAAATAGTATATAGATTGGAAAAAGAAGGAAAAGTGAAAAGAGCAGATCCTAACAATCCTTGGAATACTCCAGTGTTTTGTATAAAGAAAAAATCAGG---AAAATATAGGATGTTAATAGATTTTAGATGTTTGAATGATCTTACTGAAAAAGGAGCAGAAGTTCAATTAGGATTACCTCACCCTGCGGGATTAAAAGAAAGAAAACAAGTAGCAATACTAGACATTTCAGATGCTTATTTTACTATCCCATTAGATAAAGACTATCAGCCTTATACCGCCTTTACTTTACCAAAATTAAACAATCAAGGTCCTGGAGAAAGATTTGTTTGGTGTTCCCTTCCACAAGGATGGGTGTTGAGCCCGTTAATATATCAAAGTACCCTTAATAATATATTAAAACCTTTTAGAGAAAAACATCCT---GAGATAGATCTATATCAATATATGGATGATCTTTATGTAGGGTCTGATTTATCTAAGAAAGAGCATAAAGCAATAGTAGAAGAGTTAAGACAACTATTATTATGGTGGGGCTTTGAAACCCCAGAAGAAAAATTACAGGA---------AGAACCTCCATTTAAATGGATGGGTTATGAATTATATCCTAAGAAATGGACAATTCAAACAAAAGAATTA------AAAATACC------AGATATTCCTACCCTTAATGAGTTACAAAAATTAGTAGGAATAATAAATTGGTCATCACAGATAATACCAGGATTAAAAAT---------AAAAGCATTAACAAATATGATGAAGGGCAATCAAGCTTTAGATTCAATAAGAGAATGGACACCAGAAGCTAGACAGGAAGCAGAAGAAGCAAAATTAGCAATCGAACAACACACACAATCGGGATATTATGATCCCAAGAAAGAAGTGTATGCTAAATTAAGCATCGTAGGTCCACATAGTATAGGTTATCAGGTATATCAAAAGGAAA---TACCAGAAAAAG------TACTTTGGTATGGAAGGATGAATAGACAAAAGAAGAAAGCAGAAAATACATGTGATATAGCCTTGAGGGCTATATACAAGATTAAGGAAGAATCTATAATTAGGATAGGAGTAGAGCC-----------------AATTTATGAAATTCCAT--------------GTTCTAGAGAAGCTTGGGAATCAAATTTAATATCGACACCTTATTTAA---AGGCTAGTCCACCGAAAGTAGAATTTATTCATGCTGCATTAATGATG-----CAAAAATCATTGGCAATGATTAA------------------GGAAGATCCGATCCC------AGATACAGAAACTTGGTATATAGATGGGGGA---AGAAAGAAAGGGCAACCAGCAAGAGCAGCATATTGGACAGATAAAGGTAGATGGGAAGTAATGCAATTGGAA---GGAAGTAATCAAAAAGCAGAAATTATGGCCTTATTAATGGCCTTAAAGG---CAGGAGGAAAAGAAATGAATATAATAACAGATTCACAATATAT------------------TATAAATGTATTAAAACAAAAACCAGAT----------ATGATGGAGGGGATATGGCAAGAGGTATTAGAAGAAATGGAAAAGAAAACAGGATTATATATAGATTGGGTACCTGGACATAAAGGA---ATACCTGGGAATATGGAAGCAGATCAGCTCTG------------------TCAAACAAT------------GATGATTATATCAGGAAATGGTATTCTAGAAAAAAGAAAAGAAGAT------GCAGGATATGATCTTTTAGCAGAAC---AAGAAGTTCACTTAATGCCAGGAGAAGTTAGAATAATACCCACAGGAGTAAAATTAATGTTACCAAAAGGACACTGGGGTATGGTAGTAGGAAAATCATCAATAGCAAAACAAGCATTAGATGTATTGGGAGGAGTAATAGAT{CG}A{AT}GGATA-TAGAGGGGAAATAGGAGTTATTATGATGAATTTAGGAAGGAAGAGTATAACTTTAAAAGAAAAACAGAAAATAGCACAATTAATTATAATTCCATGTAAACATGAAGAGCTCCAACAAG---GAGAAATAATATTAGATTCAGAAAGAGGAGAAGGAGGATATGGATCTACAGGGGC{AG}TTTGC----------------CTCGTGGATAGATAAAATAGAAGAAGCAGAA-TTAAATCATGA-AAAATTTCATTCAGATCCAGAATATTTAAGAACAGAATTTGGGCTTCCCAAACAAGTAGCAGAAGAAATAAAA{AG}GAAAATGCCCACTTTGTATAATAC------------AAGGTGAA------CAACCGATGGGAAAATTAAAAATAGGTCCA------------GGAATATGGCAAGCAGATTGTACTCATTTGGAGGGA------------AAAATTATATTAGTGGCAGTAAATACAGAATCAGGTTATATATGGGCAAAAATATTACCTCAAGAAAATGCTGAGACT---ACTGTAAAAGCATTTTTACAATTAATATCAG---AACATCATGTTACAGAAATTCAAACAGATAATGGTCCTAATTTTAATAATTCAAAAATGGAAGGAATGGTAGGTTTTTTAGGGATAAAACATAAATTTGGAATCCCAGGAAATCCACAATCTCAAGCTTTAGTTGAAAATACAAATAAAACATTAAAAAGATGGATAGACAAATTTAAGGGAGAAGTTACAACATTAGAAGCAGCATTAGCTTTA---------------GCAGTCTATGCTCTTAATTTTAAGCAAAGGGGTAGAATAGGGGGAATATCCCCATATGAACTATTGATACAACAAGAATCAGAAAGAATAAAAGA{CT}TATTTCTCACAAA---TTCCT-ACAAAAAATTTA--AAAAATTCTTGGATTTATTAT---------AAGGATAGAAGAGATAA-----AGAATGGAAAGGTCCAATACAAGTAGAATATTGGGGACAAGGAG-CAGTCCTTGTCAAACA---CCCAGAACAAGGATATATCCTCATACCTAGGAGACACATAAGGAGAGTTCCA------GAGCCCTGTACTC------------------TTCCAGAAGTGGA-----------ATGA------------------------------------------------------------------------------------------------ FIVaju_Cheetah --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTAATAATCCTTGGAACACTCCAATCTTTTGCATAAAGAAAAAATCAGG---AAAATGGAGGATGTTAATAGATTTTAGATGCCTAAATGATTTAACAGAAAAGGGAGCAGAAGTACAACTAGGATTGCCTCATCCAGCTGGATTACAAGAAAGAAAGCAAGTAACAGTTTTAGACATAGCAGATGCATATTTTACAATTCCATTAGATCCAGAATATGCTCCATATACAGCATTTACTCTGCCAAAAATAAATAATGCAGGTCCTGGAGAAAGATTTGTATGGTGTAGTTTACCACAGGGATGGGTCTTAAGTCCTTTGGTTTATCAAAGTACTTTAAACAATATTTTAAAACCATTTAGGGAAAAGCATCCA---GAAATAGATTTATATCAATATATGGATGATATTTATATAGGATCAGATTTAAATAAAGAAAGACATAGAGAGATAGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- FIVccr_Spotted_Hyena ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCCGGCAGGCCTCAAACAAAGAAAACAAGTTACAGTCTTAGACATAGCAGATGCATACTTCACTATTCCACTAGATCCAGACTTTCAGCCTTATACAGCCTTTACTCTACCAACAATAAACAATCAAGGACCAGGAACCAGATATATCTGGTGCTCACTTCCACAAGGATGGGCCTTAAGCCCCTTGATTTATCAGAGCACATTAAGAGACATTCTGCAACCCTTTAGACAAAAATATCCA---GAGATAGACCTCTATCAATACATGGATGACATCTACATAGGATCAGACCTGCCAAAGACAGACCACAAGGCAATAGTTAAAGAGCTTAGAGAAATTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- FIVfca_Domestic_cat_Subtype_C -----------------------------------------------------------------------------------------------------------------------------CTGCTGGCAGGGAGGAAAAAAGAACCAGGGAAACTG-------------GAAGAAGGGGCGA----------GCTGCAGCCCC----GGTAAATCAAGTGCAG---------------------------------------------------------------------CAAGCAACAATGCCATCTGCTCCTCCAATGGAAG------------------------------------------------------------------------------------AGACATTGTTAGATTTATAAATTATAATAAAGTGGG-------------------------------------------------------------------------------------------------------------------------------------------------------TACCACTACAACATTAGACAGAAGACCTGAAATACTAATATTTGTAAATGGGTACCCTATAAAATTTTTATTAGATACTGGGGCAGATATAACAATTTTAAATAGGAGAGATTTTCAAGTAAA-------GAATTCTATAGAAAATGGGAAACAGAATATGATTGGAGTAGGTGGAGGAAAAAGAGGA-ACAAATTATTGTAATGTACATCTGGAAAT---------------CAGAGATGAAAATTATAAAACACAATGTATATTT---GGCAATGTTTGTGTTTTAGAAGATAATTCACTAATTCAACCATTGTTGGGTAGAGATAACATGGTTAAATTTAATATTAGATTAGT------AATGGCTCAGATCTCAGATA---AAATTCCCATAGTGAAAGTAAAAATGAAAGATCCTAATAGAGGACCACAAATAAAACAGT-GGCCACTGTCAAATGAAAAAATTGAAGCTTTAACAGAAATAGTAGAAAGATTAGAGAAAGAAGGAAAAGTAAAAAGAGCTGATCCAAATAACCCTTGGAATACACCAGTATTTGCTATTAAGAAGAAAAGTGG---GAAATGGAGAATGCTTATAGACTTTAGAGAGCTAAATAAATTAACTGAAAAGGGAGCAGAAGTCCAGCTGGGACTACCTCACCCTGCTGGATTACAGTTAAAGAAACAAGTAACTGTATTAGACATAGGGGATGCCTACTTTACCATTCCCCTCGATCCAGATTATGCTCCTTACACAGCATTTACTTTGCCTAGAAAAAATAATGCAGGGCCAGGAAGGAGATATGTGTGGTGCAGTCTACCACAGGGATGGGTATTAAGCCCACTAATATATCAAAGTACACTGGATAATATAATACAACCTTTTATTAGACAAAATCCT---CAATTAGACATTTACCAATATATGGATGATATATATATAGGATCTAATTTAAGTAAAAAGGAACATAAAGAAAAGGTAGAAGAATTAAGAAAGTTATTATTATGGTGGGGATTTGAAACCCCAGAAGATAAATTACAGGA---------AGAACCCCCATATAAATGGATGGGTTATGAATTACATCCATTAACATGGACAATACAACAGAAACAATTA------GAAATTCC------AGAGAGACCTACTTTAAATGAATTACAAAAATTGGCAGGGAAGATTAATTGGGCAGGTCAGATCATTCCAGATTTATCTAT---------AAAAGCATTAACTAGAATGATGAGAGGTGATCAGAATTTAAATTCAATAAGAGAATGGACTGATGAGGCCAAAATGGAAGTACAAAAAGCCAAAGAGGCAATTGAAAAACAGGCACAATTAGGATACTATGATCCTAATAAGGAAGTGTATGCAAAATTGAGTATAGTAGGGCCACACCAGATCTGTTATCAGGTGTATCATAAAAA------CCCAGAACAAA------TTTTATGGTATGGGAAAATGAGTAGGCAGAAGAAAAAGGCTGAAAATACTTGCGACATAGCTTTAAGAGCATGTTACAAGATAAGAGAAGAATCTATTGTAAGGATAGGAAAGGAACC-----------------AATATATGAAATACCAT--------------CAAGTAGAGAAGCCTGGGAATCAAATTTAATTAATTCACCATATCTAA---AAGCTCCGCCACCTGAAGTAGAGTTTATCCACTCTGCCTTAAATCTA-----AAGAGAGCACTAAGTATGGTACA------------------GGATAAACCCATCTT------AGGAGCAGAAACATGGTATATAGATGGAGGG---AGAAAGCGGGGAAAGGCAGCAAAAGCAGCTTACTGGACAGATACAGGGAAATGGCAGGTAATGGAAATAGAA---GGAAGCAATCAAAAGGCAGAAGTTCAAGCATTATTATTAGCATTAAAAG---CAGGACCAGAAGAGATGAATATAATAACAGATTCTCAATATAT------------------AGTAAATCTTATTAGTCAACAACCTGAT----------ATGATGGAAGGAGTCTGGCAAGAAGTATTAGAAGAACTGGAAAAGAAAGTAGCAATATTTATAGATTGGGTTCCAGGACATAAAGGC---ATTCCAGGAAATGAAGAAGTAGATAAGCTCTG------------------CCAAACAAT------------GATGATTGTAGAAGGAGATGGAATATTAGAAAAAAGAGCAGAGGAT------GCAGGGTATGACTTGTTAGCTGCAA---AAGAAGTACATTTACTGCCAGGAGAAGTAAAAGTAATTCCAACAGGAGTAAGATTAATGTTACCTAAAGGACATTGGGGATTGATACTTGGAAAAAGTTCAATGAGCAGCAAAGGATTAGATGTGCTAGGAGGAGTGATAGATGAAGGATA-TAGAGGAGAAATTGGGGTAATAATGATTAACTTGTCAAGAAAATCAATAACTTTACAAGAAAAACAAAAGGTAGCACAATTAATAATACTACCATGTAAACATGAAAATTTAGAACAAG---GAGAAATAATAATGAATTCAGAGAGAGGAGAAAAAGGATATGGATCAACAGGAATATTTTC----------------CTCCTGGGTTGAAAGGATTGAAGAAGCAGAA-ATAAATCATGA-AAAATTTCATTCAGATTCACAGTATTTGAGGACTGAATTTAAGTTACCCAGAATGGTGGCTGAAGAAATAAAAAGAAAATGCGCTCTATGTAGAATTA------------GAGGAGAA------CAGGTGGGAGGACAATTAAAAATTGGACCA------------GGAATTTGGCAAGTGGATTGCACACATTTTAATAAT------------GAAATAATTCTTGTGGCAATTCATGTCGAATCAGGATTCCTTTGGGCACAAATAATACCACAAGAAACAGCTGACTGC---ACAGTCAAAGCAATAATGCAACTCCTAAGTG---CTTATAATGTTACAGAACTGCAAACAGACAATGGGCCAAATTTTAGAAATCAAAAAATGGAAGGTTTACTCAATTACATGGGAATAAAACATAAATTTGGAATACCAGGCAACCCTCAATCTCAAGCTTTGGTTGAAAATGCCAATAATACTTTAAAGTGTTGGATTCAGAAGTTTTTGCCTGAAACAACATCTTTAGACAATGCTTTGGCTCTC---------------GCTCTGCATTGCCTTAATTTTAAACAAAGGGGTAGAATAGGGGGAATGGCCCCATATGAATTATTAACACAACAAGAATCATTAAGAATACAGGATTATTTTTCTCAAA---TTC----CAAGCAAATTG--CAAAGTCAGTGGATTTACTAT---------AAAGATCAAAAAGACAA-----AAATTGGAAAGGACCAATGAGAGTAGAGTATTGGGGACAAGGAT-CAGTGTTATTAAAGGA---TGAAGAGAGGGGATATTTTCTTGTACCTAGGAGGCACATACGGAGAGTCCCA------GAACCCTGCACTC------------------TTCCTGAAGGGGA-----------TGAGTGA--------------------------------------------------------------------------------------------- FIVfca_Domestic_cat_TM2 -----------------------------------------------------------------------------------------------------------------------------------------------GAAAACCTCGGGAAACGA-------------GAAGGTGGGGCGA----------GCTGCAGCCCC----AGTAAACCAAGTGCAG---------------------------------------------------------------------CA---AATAGTACCATCTGCACCTCCAATGGAGG------------------------------------------------------------------------------------AGAAACTATTAGATTTATAAACTATAATACAATAGG-------------------------------------------------------------------------------------------------------------------------------------------------------TACTACCACAACTTTGGAAAGAAGACCTGAAATACAAATTTTTGTAAATGGACACCCTATAAAATTTTTATTAGATACAGGAGCAGATATAACAATTTTAAATAGAAAAGATTTTCAAATAGG-------AAATTCTATAGAAAATGGGAAACAGAATATGATTGGAGTAGGAGGAGGAAAAAGAGGA-ACTAATTATATCAATGTACATCTAGAAAT---------------TAGAGATGAAAATTATAGGATGCAATGTATATTT---GGAAATGTGTGTGTTCTAGAAGATAATTCCTTAATCCAACCATTATTAGGAAGAGATAACATGATTAAGTTTAATATAAGATTGGT------AATGGCTCAAATTTCAGAAA---AGATTCCAATAGTAAAAGTGAGGATGAAGGACCCTACTCAAGGGCCTCAGGTAAAACAGT-GGCCATTATCAAATGAAAAAATTGAAGCTTTAACAGACATAGTAGAAAGATTAGAATCAGAAGGAAAAGTGAAAAGGGCTGACCCGAATAATCCTTGGAATACCCCAGTATTTGCTATTAAGAAGAAGAGTGG---TAAATGGAGGATGCTCATAGATTTTAGGGTCCTAAATAAATTAACAGACAAAGGAGCAGAAGTCCAGTTAGGACTTCCTCATCCTGCTGGATTACAAATGAAAAAACAAGTAACGGTGTTGGATATAGGGGATGCATATTTTACCATTCCTCTAGATCCAGATTATGCTCCTTATACTGCATTTACATTACCTAGGAAAAATAATGCAGGGCCAGGGAGGAGATATGTATGGTGCAGTTTACCACAGGGGTGGGTTTTAAGTCCATTAATATATCAGAGTACCTTAAACAATATATTACAGCCATTTATCAAACAAAATTCT---GAGTTAGATATTTACCAATATATGGATGATATATATATAGGATCAAATTTAAATAAAAAAGAACATAAACAAAAAGTAGAAGAATTAAGAAAATTGTTATTATGGTGGGGATTTGAAACCCCGGAAGACAAATTACAAGA---------AGAGCCCCCATATAAGTGGATGGGCTATGAATTACATCCATTAACATGGTCAATACAGCAAAAACAATTA------GAAATTCC------AGAAAGACCCACATTAAATGAACTACAGAAATTAGCAGGTAAAATAAACTGGGCCAGTCAGACTATCCCAGACTTAAGTAT---------AAAAGAACTAACTAACATGATGAGAGGAGATCAGAAATTAGACTCAATAAGAGAATGGACTGTAGAAGCCAAGAGAGAAGTACAAAAAGCTAAGGAGGCTATTGAGACGCAAGCACAGCTAAATTATTATGATCCCAATCGAGGATTATATGCAAAATTGAGTTTAGTGGGACCACATCAAATATGTTATCAAGTGTATCAAAAGAA------CCCAGAACACA------TTTTATGGTATGGTAAGATAAATAGACAAAAGAAAAAAGCAGAAAATACCTGTGATATAGCTCTAAGGGCATGTTATAAAATAAGAGAAGAGTCTATTATAAGAATAGGAAAAGAACC-----------------AGTATATGAAATACCTG--------------CATCCAGAGAGGCCTGGGAATCAAATCTAATTAGATCTCCATACCTTA---AGGCCCCACCACCTGAGGTAGAATTTATACATGCAGCCTTAAGTATA-----AAAAGGGCTCTAAGCATGATACA------------------AGATGCCCCTATAAT------AGGAGCAGAAACATGGTATATAGATGGGAGT---AGAAAACAAGGAAAAGCAGCAAGAGCAGCCTATTGGACAAATACAGGCAAATGGCAGATAATGGAGATAGAA---GGAAGTAATCAAAAAGCAGAGGTACAGGCTTTATTATTGGCCTTAAAAG---CAGGATCAGAAGAAATGAATATCATAACAGATTCACAATATAT------------------TTTGAATATTCTCAACCAACAACCAGAT----------TTGATGGAAGGACTATGGCAAGAGGTCTTAGAACAAATGGAAAAGAAAATAGCAATTTTTATAGACTGGGTTCCTGGGCATAAAGGT---ATACCAGGAAATGAAGAAGTAGATAAACTTTG------------------CCAAACAAT------------GATGATTATAGAAGGTGAGGGGATATTAGAGAAAAGATCAGAAGAT------GCAGGATATGACTTATTAGCTGCAGCACAAGAAACACATTTCTTGCCTGGAGAGGTAAGAATAGTACCAACAAAAACAAGAATAATGCTACCAAAAGGACACTGGGGACTAATAATGGGAAAAAGCTCAATAGGAAGTAAAGGGGTGGATGTATTAGGAGGAGTTATAGATGAAGGATA-TAGAGGAGAATTAGGAGTGATTATGATTAATTTAACAAAAAAATCAATAACTATATTAGAAAAGCAAAAAATAGCACAATTGATAATATTGCCTTGTAGACACGAAGGCCTACAACAAG---GAGAAATACAAATGAATTCAGAAAGAGGAGAAAAAGGATTCGGATCAGCAGGAGTTTTTTC----------------ATCATGGGTAGATAGAATTGAAGAAGCAGAG-TTGAATCATGA-AAAATTTCATTCAGACCCACAATATTTAAGGACGGAGTTCAATCTACCTAGAATAGTAGCAGAAGAAATAAAAAGAAAATGTCCCCTGTGCAGAATTA------------GAGGCGAA------CAAGTAGGGGGACAATTAAAGATTCGGCCT------------GGAATATGGCAAATGGATTGCACACATTTTAATGGT------------AAAATAATCATTGTAGCAGTGCATGTGGAATCAGGATTTTTATGGGCACAGATAATTCCACAGGAGACTGCAGATTGT---ACAGTCAAAGCTCTTTTACAACTTATATGTG---CTCATAATGTTACAGAATTACAAACAGATAATGGACCAAATTTTAAAAATCAGAAAATGGAAGGATTATTAAATTATATGGGAATAAAACATAAATTGGGTATACCAGGTAACCCACAATCACAAGCATTGGTGGAAAATGCTAATAACACATTGAAAGTTTGGATTCAGAAATTTCTACCAGAGACTACTTCTCTGGATAATGCTTTGGCCCTA---------------GCCCTGCATTGTCTCAATTTTAAACAAAGGGGTAGACTAGGGAGGATGGCCCCTTATGAATTATACATACAACAAGAATCATTAAGAATACAAGACTATTTTTCCGCGA---TTC----CACAAAAGTTA--ATGATGCAATGGTTGTATTAC---------AAAGATCAAAAAGATAA-----AAAATGGAAGGGACCAATGAGAGTGGAATATTGGGGACAAGGAT-CAGTATTATTAAAGGA---TGAAGAGAAGGGAATATTTCTTGTACCTAGGAGACACATAAGAAGAGTCCCA------GAACCCTGCACTC------------------TTCCTGAAGGGGA-----------TGAGTGA--------------------------------------------------------------------------------------------- FIVhya_Jaguarundi --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTAATAATCCTTGGAATACTCCAATCTTTTGTATAAAGAAGAAATCAAG---AAAATTTAGAATGTTGATAGATTTTAGAGTGTTAAATAGTTTAACTGAAAAGGGAGCAGAGGTACAATTGGGAATCCCTCATCCTGCAGGATTAAAACAAAGAGAAAGAATCACAGTTTTAGATATTGGGGATGCTTATTTTACTATCCCATTAGATCCTGAATATCAACCCTATACAGCTTTTACATTACCAAATGTTAATAATAAGGGTCCAGGAAGAAGATATGTATGGAAATCACTTCCTCAAGGATGGGTATTAAGTCCTTTAATTTACCAAAGTACACTGGATAATATTTTAAGACCTTACAGAGAAAAATATCCA---GATTTAGATATTTATCAATATATGGATGATATTTACATAGGATCAGACCTTAGTAAGCAAGAACATAAGAAAAGGGTACAAGAATTGCAAGAATGGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- FIVlpa_Ocelot --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCAAACAATCCTTGGAATACCCCAGTTTTTGCAATTAAGAAAAAATCAGG---TAAATGGAGAATGTTAATAGATTTTAGGGATTTAAATGCAAAAACTCAAAAAGGAGCAGAAGTCCAACTGGGTATACCTCATCCGGCTGGGTTGCAACAGAAAGAGCAAGTAACAGTATTAGATATAGGAGATGCTTATTTTACAATACCTTTAGATCCTGAGTATCAGCCATATACAGCATTTACATTACCTGCTCTAAATAATCAGGGTCCAGGAAAAAGATATGTATGGTGTTCTCTACCTCAGGGTTGGGTTTTAAGCCCTTTAATTTATCAAAGCACCCTTGATAATATTTTACAACCCTATAGGGACAAGTATAAGAATGAATTAGAAATTTATCAGTATATGGATGATATTTATATAGGAAGTGATTTAGATAAGAAAACTCATAAAGACAGAGTACAAGAATTGAGAGAATTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- FIVlru_Bobcat ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAAAGATTAGAAAAAGAAGGAAAAGTTAAAAGAGCAGATCCTAATAATCCTTGGAATACTCCAATATTTTGTATTAAGAAGAAATCAGG---GAAATGGAGAATGTTAATAGACTTTAGAGAATTGAATAAATTAACTGAAAAAGGAGCAGAAGTTCAGTTGGGATTACCTCATCCAGCTGGTCTTCAACAAAGAAAACAAGTTACAGTATTAGATATTGGAGATGCCTATTTTACCATACCATTGGATCCAGAATATCAACCATATACTGCTTTTACTTTACCTAATAAAAATAATCAAGGACCAGGGAGAAGATATGTTTGGTGTAGTTTACCTCAAGGATGGGTTCTTAGTCCATTAATATATCAGAGTACTTTAGATAATATTTTAACACCATGGAAAAGAAAACATCCA---GAAGTAGATTTATATCAGTATATGGATGATATTTATGTTGGAACAGATTTCAGTAAAGTAGAACATAAAAATGTAGTAGAAGAATTAAGACAATTATTATTCTTTTGGGGATTTGAGACCCCAGAGGATAAGTTACAGGA---------GGAACCTCCCTACAAATGGATGGGATATGAACTTCATCCTACCAAATGGACTATTCAAAGTAAAAGTTTA------GAAATACC------AGAAATACCTACCTTGAACCAATTACAAAAATTGGTGGGAATCATTAATTGGGCGACTCAAAATGTAGGAGGCATTAAAAT---------AAAAGCATTGACAGATTTAATGAAAGGTAACCAACAATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- FIVpco_Puma -----------------------------------------------------------------------------------------------------------------------TACAGATTGTTTTCA---------AATGCTCTCGGGAAACGG-------------GAAACAGGGGGGA----------CCTGCGACCCCC-CAGAGAAATCAAATGCAGGTGCA---------------------------------------------------------------GCAATCTGTGCTGCCAACCGCACCTCCCTTGGAGG----------------------------------------------------------------------------------------------AGACTCCTCTCCTCCAATTATAAAAG-------------------------------------------------------------------------------------------------------------------------------------------------------CAATATGG--AAAATGGACACACGACCCCGTGTCGAGGCCTGGATAAATGGGAAAAAGATTAATTTTTTGTTAGATTCAGGGGCTGATATTTCAGTAATAAATTTGAAAGATTGGAATCAAGG-------TCAAGCTATTAAAGAAGGGCCTCAACATATGACAGGGGTAGGAAGAGTACAAAATGGA-ATAAGGTACTCTAATGTACATATTGAAAT---------------T---CATACAGAAAATGAAGGAAAATGTTGTAAT---GGCTATATGTGTGTCCTTCCACAAAATAATTTAGTAGACAATTTATTAAGCAGAGACAATTTACAGAAACTAGGTATAAGAATGGT------AATGGCAATGATTTCTGATA---AAATACCTGTAGTTAAAGCAAAGATGAAAGATCCAAATAATGGACCAAGGGTCAAACAAT-GGCCATTATCAAAAGAAAAAATAGAAGCTTTAACAGAAATAGTAGAAAGATTAGAAAAAGAAGGGAAAGTAGGAAGGGCAGACCCTAATAACCCTTGGAATACTCCTATATTTTGTATAAAGAAGAAATCAGG---GAAATGGAGAATGCTAATTGATTTTAGAGAACTTAATGCAAAAACAGAAAAAGGAGCAGAAGTCCAATTAGGATTACCTCACCCATCTGGATTACAGAAGAGAAAGAATGTAACAGTTCTAGATATAGGAGATGCTTATTTTACCATCCCTTTAGATCCTGATTATCAGCCATATACAGCATTTACTTTACCATCTAAGAATAATCAAAGTCCAGGAAGAAGGTATATTTGGAAATCTCTTCCACAGGGGTGGATCTTGAGTCCCTTAATATACCAGAGCACTTTAGATAATATTCTACAGCCATTTAGAAAGAGATATGAAAAACAGATAGATATATACCAATATATGGATGATATTTATATAGGATCAGATAAAGAAATAAAACAACACAGAAAAATTGTTCAAGAACTACGAGAGTTACTTTTATGGTGGGGATTCGAAACACCAGAAGATAAATTACAAGA---------AGACCCACCATATAAATGGATGGGATATGAATTACACCCACAAGGGTGGAAAATTCAAACAACTAAGCTA------GAAATCCC------TGATAATCCAACATTAAATGAATTACAAAAATTGATAGGAACAATTAATTGGGCAACTCAAATAATCGGGGGATTGCCTAT---------AAAAAATTTGACTGAAATGATGAAGGGGAATCCAGACTTGAACTCAAGAAGGGAATGGACAATTGAGGCCAGACAAGAAGCAGAAAAGGCAAAAGAGGAAATAGAGAACATACCTAATGGGAATTATTATGATGACAAGAAAGAATTATATGCTATTTTAAGCATCAATGGTCCATTACAAATAAGTTACATGGTATATCAATTAGAGGGAATTAAGAAACTTC------CTCTATGGTATGGAAGAATGAATAGAATTAAAAGGAAGATAGAAAATACATGTGATGTAGCATTAAGAACTATAAACAAAATTAAAGAAGAATCTATAATAAGATTAGGAAAGGAGCC-----------------AATATATCAGATACCTT--------------GTTCAAAGGAAAATTGGGAAAGTTATATTCAAACCAGTAGGTACTTAA---AGAGTACCCCTCCAAAGGTAGAGTTTGTAAATAGCAGTTTAATGATA-----GAAAGACATTTGGCATGTTTAGT------------------AGATGACCCTATTCCAGATGAAGATGCAGAGACATGGTACATAGATGGAGGA---AGAAAGAAAGGAAAAAAGGCTAGAGCTGGTCGGTGGAAAAATAGTAAAGAATGGCAAATTATGGAAATAGAA---GGATCTAATCAGGTGGCAGAAGCACAAGCTTTGAATATGGCTTTAAAAG---CAGGACCAGAAAAGATGAATATTATAACGGACAGTCAATATGT------------------ATATAATATGATAAGAGCTAGGCCTGAA----------CCTAGTAGTCCATTATGGAAAGAAATTATAGAAGAATTGCAAAAGAAAGAAAAGATATTTTTGGATTGGGTACCTGGACATAAGGGA---ATTCCAGGAAACAAAGAAATAGATGAATTAGT------------------TCAATGTAA------------TATGATTATAGAAGGAGATGGAATATTGCAAAAAAGGGAAGAAGAT------GCAGGGTATGACTTGTTAGCTTTAG---AAAAAATATATCTGCTTCCTTCTGAAACAAGGAAGATATCTGTTAATTGTAAAATACAATTGCCTTTAAGAACTGTAGGCCTTATCATGGGAAAAAGTTCTATAGGATTAAAAGGACTAGATGTTCTTGGAGGAGTAATAGATTCAGGATA-CAGAGGAGAAATATCAGTTATTATGGTAAATACCTCTAAAAAAGGGCAATGGATAGAACAAGGACAAAAAATAGCTCAGCTACTTATCATGCCAGTACAACATGAAACCCTGGAACAAG---GGAAGGTACAATTGAATTCAGAAAGAGGAACACAAGGATTTGGTAGCACAGGAGCATTTGCATTG----------CAATCCTGGATGGATTATATAGAACAAGCAGAA-ATCGAGCATGA-CAAATTTCATACAGATGAAAAGACATTGCAAGAAAAATTTGGATTACCTAGAGTAGTAGCTAATGAGATTTTACAAAAGTGTACAGTCTGTAGAATGACAGGAACAG---GAGGTGGA------AACAAGGGTGGAAAGTTAAAAATGGGACCT------------GGAGTATGGCAAATAGATTGTACTCATTTAGAAGGA------------CAAATAATATTAGTAGCTATTAATGTAGAATCTGGACTGTTATGGACGAAGCTACTAAAACAAGAAACAGCTAAAGAA---ACAGTGATGGCTTTACTAGATTTAATACAGA---CACATAATGTTGTAGAGATACAAACAGATAATGGACCCAATTTTGTAAATTCAAGGATGGAAGGACTCACTAATTTTTTGGGGATTCAACACAAATATGGAATCCCATTAAATCCACAAAGTCAAGCATTAGTGGAGAACATAAATAGTACTTTAAAAAGTTGGATAAAGAAGTTTAGAACAGAAGTAGAAACCTTGCAGGCAGCTGTAGCATTA---------------GCTACCTTTGCTCTAAATAAAAAAAGAAAGGGTAATATAGGGGGTATGTCTCCCTATGAATTACATATATGGCAGGAGAATACATTAATACAACAATACTACTCAAATA---TCATATTTAAAAAATTTGGCAAAGAACAATGGATCTATTAT---------AAAGACATAAAAGATAA-----AGCATGGAAAGGCCCGGTGGAAGTCCTCTATTGGGGGGAAGGAT-CGGTTTTGATTAAGAC---TCCTGAAAAAGGACTTTTCTTAGTTCCTAATAGGAGGATTCGAAGAGTTCC---------------TCCCC------------------CTCAAGAATTAGA-----------GGTAAGTAATGCAACCATACAGAGTACAGAG------------------------------------------------TAG------------------ HIV_1_Group_M --------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAGGGAAAATTTGGC--------CTTCCAGCAA-------------AGGGAGGCC----------AGGAAATTTTCCTC---------------------------------------------------AGAGCAGA--------------CCAGAGCCGACAGCCCCACCAG---------------------------------------------------------------------------------------------------CAGAGATCTTTGGGATGGGGGAAGAGATAAC------CTCCCCTCCGAAAC--------------------------------AGGAGCAGAGAGAC------------------------------------AAGGAACAGGCCCCACCCTCAGTTTCC--CTCAA------------------ATCACTCTTTGGCAACGACCAGTAGTCAAAGTAAAAATAGAAGGACAGCTAAAAGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAG------AAGACATAAATTT----------G---CCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTCATCAAAGTA-AGACAGTATGATCAGATACTTATAGAAAT---------------TTGTGGAAAAAAGGCTATAGGTACAGTATTAGTA---GGGCCTACAC------------------------CTGTCAACATAATTGGAAGAAATATGTTGACCCAGATTGGTTGTACTTTAAA------TTTCCCAA------TTAGTC---ATGTTGAGACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGTCCAAAGGTTAAACAAT-GGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTACAGAGATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAATATTTGCTATAAAGAAAAAAGACAGCACTAAATGGAGGAAATTAGTAGATTTCAGGGAGCTCAATAAAAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCAGCGGGCCTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTGGGGGACGCATATTTTTCAGTTCCTTTAGATGAAAACTTTAGAAAGTATACTGCGTTCACCATACCTAGTACAAACAATGAGACACCAGGAATCAGGTATCAGTACAATGTGCTTCCGCAGGGATGGAAAGGATCACCGGCAATATTCCAGAGTAGCATGACAAAAATCTTAGAGCCCTTTAGGTCAAAAAATCCA---GAAATAATTATCTATCAATACATGGATGACCTGTATGTAGGATCTGATTTAGAAATAGGGCAGCATAGAACAAAAATAGAAGAGTTAAGAGCTCATCTGTTGAGCTGGGGATTAACTACCCCAGACAAAAAGCATCAGAA---------AGAACCGCCATTTCTTTGGATGGGATATGAACTTCATCCTGACAAGTGGACAGTCCAGCCTATAATACTG------CCAGAAAA------AGAAAGCTGGACTGTCAATGATATACAGAAATTAGTGGGAAAACTAAATTGGGCAAGTCAAATTTACCCAGGGATTAAAGT---------AAAGCAATTGTGTAAGCTCCTCAGGGGAGCCAAAGCACTAACAGATATAGTAACACTGACTGAGGAAGCAGAATTAGAATTGGCAGAAAACAGGGAGATTCTAAAAGAACCTGTGCATGGGGTATACTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAACAAGGGCAAGACCAATGGACATATCAAATTTATCAAGAGCCATT---------TAAAA------ATTTAAAAACAGGAAAATATGCAAGAAAAAGGTCTGCTCACACTAATGATGTAAAACAATTAACAGAAGTGGTGCAAAAAGTGGTCATGGAAAGCATAGTAATATGGGGAAAGACACC-----------------TAAATTTAAACTACCCA--------------TACAAAAAGAAACATGGGACACATGGTGGATGGACTATTGGCAGGCTA------CCTGGATTCCTGAATGGGAGTTTGTCAATACCCCTCCTCTAGT--------AAAATTATGGTACCAGTTAGA------------------GAAAGACCCCATAGC------AGGAGTAGAGACTTACTATGTAGATGGGGCAGCCAATAGGGAGACTAAGCTAGGGAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTGTTTCCCTAACTGAGACAACAAATCAAAAGACTGAACTACATGCAATCCTTTTAGCTTTGCAGG---ATTCAGGATCAGAAGTAAATATAGTAACAGACTCACAGTATGC------------------ATTAGGAATCATTCAGGCACAGCCAGAC-------AGGAGTGAATCAGAATTAGTAAATCAAATAATAGAGAAGCTAATAGGAAAGGACAAAGTCTACCTGTCATGGGTACCAGCACACAAAGGA---ATTGGAGGGAATGAACAAGTAGATAAATTAGT--------------------CAGTTCT-------------------------------------------------------------------------------------------------------------------GGAATCAGGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGT----------------------GCTGTTTTTAGATGGGATAGATAAAGCTCAA-GAAGAACATGA-AAGATATCACAGCAATTGGAGAACAATGGCTAGTGATTTTAATCTGCCACCTATAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAACTAA------------AAGGGGAA------GCCATGCATGGACAAGTAGACTGTAGTCCA------------GGGATATGGCAATTAGATTGCACACATCTAGAAGGA------------AAAGTAATTCTGGTAGCAGTCCATGTAGCCAGTGGCTATATAGAAGCAGAAGTTATCCCAGCAGAAACAGGACAGGAG---GCAGCATACTTTCTGCTAAAATTAGCAGGAA---GATGGCCAGTAAAAGTAGTACACACAGACAATGGCAGCAATTTCACCAGCGCTGCATTTAAAGCAGCTTGTTGGTGGGCAAGTATCCAACAGGAATATGGGATCCCCTACAATCCCCAAAGTCAAGGAGTAGTGGAATCTATGAATAAGGAATTAAAGAAAATCATAGGACAGGTAAGAGAGCAAGCTGAACACCTTAAAACAGCAGTACAAATG---------------GCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAGAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAA---AACAAATTACAAAAATT---CAAAATTTTCGGGTTTATTAC---------AGGGACAGCAGAGATCC-----AATTTGGAAAGGACCAGCAAAACTACTCTGGAAAGGTGAAGGGG-CAGTAGTAATACAG------GACAATAGTGATATAAAAGTAGTACCAAGAAGAAAAGCAAAGATCATTAGG------GATTATG---------------------------GAAAACAGAT-----------GGCAGGTGATGATTGTGTGGCAGGTAGACAGGATGAGGATTAG--------------------------------------------------------- HIV_1_Group_N --------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAGGGAAGGGCTGGT--------CTCCCTTCAA-------------AGGGAGACC----------AGGGAACTTTCCCC---------------------------------------------------AGACAACA--------ACAAGGAAAGAGCCCACAGCCCCGCCAC---------------------------------------------------------------------------------------------------TAGAGAGTTATGGGTCTCAGGAGGAGAGGAG------CACACAGAGAAAGG-----------------AGATGCAGGAGAACCAGGAGAAGACAGAG------------------------------------AACACTCTGTACCCACCCTTAACTTCC--CTCAG------------------ATCACTCTTTGGCAACGACCTGTCATCTCAGTAAAAATAGGAAATGAAGTAAGAGAAGCTCTTTTAGACACAGGAGCTGATGATACAGTAATAG------AAGAAATACAATT----------A---GAAGGGAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGATTTATCAAAGTA-AGACAATATGATAATATAACAATAGACAT---------------ACAAGGAAGGAAAGCAGTTGGTACAGTGTTAGTA---GGACCAACAC------------------------CTGTTAATATTATAGGAAGAAACTTTTTAACACAGATTGGCTGTACTCTAAA------TTTTCCAT------TAAGTC---CTATTAAAACTGTACCAGTAAAATTAAAACCAGGAATGGATGGCCCAGAAGTAAAACAAT-GGCCTTTGACAGCAGAAAAAATAGAGGCGTTAAGAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCTAGAATAGGGCCTGAAAATCCATATAACACTCCAATTTTTGCTATAAAAAAGAAAGATAGCACTAAATGGAGAAAATTAGTAGATTTCAGAGAATTAAATAAAAGGACCCAAGACTTTTGGGAAGTGCAGCTGGGAATCCCACATCCAGCAGGATTAAAGCAGAAAAAGTCAGTAACAGTCTTGGATGTAGGAGATGCTTATTTTTCATGTCCCTTAGATGAAGATTTTAGAAAGTATACAGTTTTTACCATACCTAGTGTAAACAATGAGACACCTGGTATTAGATACCAGTATAATGTGTTACCACAGGGATGGGAGGGATCACCAGCAATTTTTCAAAGTTCAATGACAACAATTCTAGAACCATTTAGAAAGAAGCATCCA---GAGATAATCATTTATCAGTACATGGATGACCTCTATGTGGGATCTGACTTAGAAATAGCAAAACATAGAGAGACAGTAGAAGAACTTAGAGGCCATCTGTTGAAGTGGGGCTTTACAACCCCTGACAAAAAACATCAAAA---------GGAGCCACCATTCCTCTGGATGGGATATGAGCTCCATCCAGATAAATGGACAGTCCGGCCAATAAAGTTA------CCAGAAAA------GGATACATGGACTGTCAATGATATACAGAAATTAGTAGGGAAATTAAATTGGGCAAGTCAGATTTATCCAGGAATTAAAGT---------AAGACAGCTTTGCAAATTAATCAGAGGAACCAAGGCTTTGACAGAAGTAGTTACCTTTACAGAAGAAGCAGGATTAGAACTAGCAGAAAACAGGGAGATATTAAAAGAACCCCTACATGGAGTCTATTATGACCCAGAAAAGGAATTAATAGCGGAAATTCAAAAACAAGGACAAAGTCAGTGGACATATCAGATTTATCAGGAGTCACA---------TAAAA------ATTTAAAGACAGGAAAGTATGCAAAAATGAGATCTGCCCATACTAATGATATAAAGCAGTTAACTGAAGTAGTACAAAAGATAGCAACAGAAAGTATAGTAATTTGGGGAAAGACTCC-----------------TAAGTTTAAATTACCAG--------------TACAAAAGGAAGTGTGGGAGGCATGGTGGACTGAGAATTGGCAAGCAA------CTTGGATTCCTGAGTGGGAATTCGTCAACACCCCTCCCCCTGT--------AAAATTATGGTATCAGTTAGA------------------AACAGAGCCAATTAG------TGGGGCAGAAACATACTATGTAGATGGAGCAGCTAATAGAGAAACAAAATTGGGAAAAGCAGGTTTTGTGACAGATAGAGGAAGACAGAAAGTGGTCTCTATTAAAGATACCACCAATCAAAAAACTGAGTTACATGCTATCCTCATGGCCTTACAAG---AGTCAGGACAGGAAGTAAACATAGTCACTGACTCTCAGTATGC------------------TATGGGAATAATTCACTCACAGCCAGAT-------AAAAGTGAATCAGAATTGGTGAGCCAAATAATAGAAGAACTCATAAAAAAGGAAAGAGTCTATCTCTCTTGGGTACCTGCACATAAAGGT---ATTGGAGGAAATGAGCAGGTAGACAAATTAGT--------------------TAGCTCA-------------------------------------------------------------------------------------------------------------------GGAATTAGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGT----------------------ATTATTCCTAGATGGTATAGAAAAAGCCCAA-GAAGAGCATGA-AAGATATCACAGTAACTGGAGAGCAATGGCCAGTGATTTTAACTT{AG}CCCCCCATAGTGGCAAAAGAAATAGTAGCCAGCTGTGACAAATGCCAGCTAA------------AAGGGGAA------GCCATGCATGGACAGGTCAATTGTAGTCCA------------GGAGTGTGGCAGTTAGATTGTACACACTTAGAAGGA------------AAAATCATTCTTGTAGCAGTCCATGTGGCCAGTGGCTACTTAGAAGCAGAAGTTATTCCTGCAGAAACAGGACAGGAA---ACAGCATATTTTATTTTAAAGTTAGCTGGAA---GATGGCCAGTAAAAGTTATACACACTGATAATGGACCCAATTTCACTAGTGCCACTGTAAAAGCAGCCTGTTGGTGGGCAAGTATCAAACAGGAATTCGGGATACCCTACAATCCTCAAAGTCAGGGAGCAGTAGAGTCCATGAATAAAGAATTAAAGAAAATTATAGGACAAATCAGAGATCAAGCAGAACATCTAAAAACAGCAGTGCAAATG---------------GCAGTCTTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACACTGCAGGGGAGAGAATAATAGACATAATAGCAACAGACATACAGACAACAAAATTACAAA---CACAAATTTTAAAAGTT---CAAAATTTTCGGGTTTATTAC---------AGAGACAGCAGAGATCC-----CATTTGGAAAGGACCAGCCAAACTTCTGTGGAAAGGAGAAGGGG-CAGTGGTAATCCAA------GATAACGGGGATATAAAAGTAGTCCCACGTAGGAAAGCAAAAATAATTAGA------GATTATG---------------------------GAAAACAGAT-----------GGCAGGTGATGGTTGTGTGGCAAGTGGACAGGATGAAAATCAGGATATGGAA---------------------------TAG------------------ HIV_1_Group_O --------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAGGGAAATACTGGC--------CTCCGGGGGG-------------CACGAGGCC----------AGGCAATTATGCAC---------------------------------------------------AGAGACAA--------------GTGCCCCCATCAGCCCCTCCAA---------------------------------------------------------------------------------------------------TGGAGGAGGAAATGAAGGGACAAGAGA--------------------------------------------------ATCAGA------AGGGGGAT------------------------------------CCGAACGAACTCTATCCGTTTGCCTCC--CTCAA------------------ATCCCTCTTTGGGACAGACCAGTAGTTACAGCAAGGGTTGGGGGCCATCTATGTGAAGTTTTGCTGGACACAGGGGCAGATGATACAGTACTAA------ACAACATACAATT----------G---GAAGGAAAATGGACACCAAAAATGATAGGGGGTATAGGAGGTTTTATAAAAGTA-AGACAATATAATGATGTGACAGTAGAAAT---------------AGAGGGAAGAGAAGTACAGGGAACAGTATTGGTG---GGACTTACTC------------------------CTGTTAATATTATTGGAAGAAATATATTGACAGGATTAGGCTGTACACTAAA------TTTCCCTA------TAAGCC---CCATAGCCCCAGTGCCAGTAAAACTGAAACCAGGAATGGATGGACCAAAATTAAAACAAT-GGCCCCTATCTAAAGAAAAAATAGAAGCCTTGACAGCAATATGTCAGGAAATGGAACAAGAAGGAAAAATTTCAAGAATAGGACCTGAAAATCCTTATAATACACCTATCTTTGCTATAAAAAAGAAAGATAGTAGTAAGTGGAGAAAGCTGGTAGATTTTAGGGAATTAAACAAGAGAACACAAGATTTCTGGGAGGTACAGTTAGGTATCCCACACCCGGGGGGTTTAAAGCAGAAGCAATCTGTTTCAGTCCTAGATGTAGGAGATGCTTATTTCTCATGCCCCTTAGACCCAGATTTCAGAAAATATACTGCTTTCACTATTCCTAGTGTAAACAATGAGACTCCAGGAACAAGATATCAATACAATGTCCTCCCGCAAGGATGGAAGGGGTCACCAGCTATATTCCAAAGTTCAATGATAAAAATTCTTGATCCATTTAGGAAAAACAACCCA---GAATTAGAAATTTGTCAGTACATGGATGACCTATATGTAGGATCAGATTTACCCCTGACAGAACATAGAAAAAAGGTAGAATTGCTTAGAGAACACTTATATCAGTGGGGATTCACTACCCCTGATAAAAAACATCAAAA---------GGAACCTCCCTTTCTGTGGATGGGGTATGAACTCCATCCAGACAAATGGACAGTACAGCCCATCCAATTG------CCTAACAA------GGAGGTATGGACAGTAAATGATATACAAAAACTAGTAGGAAAGTTAAATTGGGCAAGTCAAATCTATCAAGGAATTAGAGT---------AAAAGAATTGTGTAAGTTAATTAGAGGCACCAAGTCATTAACAGAAATAGTACCTTTAAGTAGAGAAGCAGAGCTGGAACTAGAAGAGAACAGAGAAAAGCTAAAGGAGCCAGTGCATGGTGCATACTATCAGCCTGACAAAGATTTATGGGTTAATATTCAGAAGCAAGGAGAAGGGCAATGGACTTATCAGATATATCAGGATGAACA---------TAAAA------ACCTCAAAACAGGAAAATATACTAGGCAAAAGGCCTCCCACACAAATGATATAAGACTATTAGCAGAAGTAATCCAGAAGGTGTCTCAAGAATCTATAGTTATCTGGGGAAAATTGCC-----------------TAAATTTAAGCTGCCAG--------------TTACTAAAGAGACTTGGGAAACATGGTGGGCAGACTATTGGCAAGCCA------CTTGGATTCCAGAATGGGAATTTGTCAGCACACCCCCATTGAT--------CAAATTATGGTACCGGTTAGA------------------AAGTGAACCTATTAT------GGGGGCAGAAACATATTATGTAAATGGAGCAGCTAATAGAAATACAAAACTAGGAAAGGCAGGATATGTTACAGAACAAGGGAAACAAAAGATAATAAAATTAGAGGAGACCACCAATCAAAAGGCTGAATTAATGGCAATATTATTAGCCTTACAGG---ATTCCAAGAAAACAGTAAACATAGTAACAGATTCACAATATGC------------------ACTGGGCATCATCTCCTCCCAACCTACA-------CAGAGTGAATCCCCTATAGTTCAGCAGATAATAGAGGAACTAACAAAAAAGGACCAGGTATATCTTGCATGGGTTCCTGCTCATAAAGGC---ATAGGAGGAAATGAAAAAATAGATAAGTTAGT--------------------AAGCAAG-------------------------------------------------------------------------------------------------------------------GATATTAGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGT----------------------CCTATTCCTAGAAGGGATAGACCAGGCACAA-GAAGATCATGA-AAAGTATCATAGCAATTGGAGAGCATTAGCTAGTGACTTTGGACTACCACCAGTGGTAGCCAAGGAAATCATTGCTAATTGTCCTAAATGTCATATAA------------AAGGGGAA------GCAACTCATGGTCAGGTAGACTACAGTCCA------------AAAGTATGGCAAATAGATTGCACACATATAGAAGGC------------AAAGTCATAATAGTCGCTGTTCATGTGGCAAGTGGGTTTATAGAAGCAGAAGTGATACCAGCAGAAACGGGACAAGAA---ACTGCCTACTTCCTGTTAAAATTAGCTGCAA---GATGGCCTGTTAAAATAATACATACAGACAACGGGCCTAATTTTACAAGTGCAACCATGAAGGCTGCATGTTGGTGGACCAACATAAAACATGAGTTTGGAATACCATATAATCCACAGAGTCAAGGAGTAGTAGAAGCCATGAATAAGGAATTAAAATCAATTATACAGCAAGTGAGGGATCAAGCAGAACACTTAAGAACAGCAGTACAAATG---------------GCAGTATTTGTTCACAATTATAAAAGAAAAGGGGGGATTGGGGGGTACACTGCAGGAGAAAGGATAATAGACATGTTAGCATCACAAATACAAACAACAGAATTACAAA---AACAAATTTTTAAAATT---CAAAAATTTCAGGTCTATTAC---------AGAGACAGCAGAGATCC-----TATTTGGAAAGGACCGGCACAGCTCCTGTGGAAAGGTGAAGGAG-CAGTAGTCATACAA------GATAAAGGAGACATTAAGGTAGTACCAAGAAGGAAAGCAAAAATAATTAGA------CATTATG---------------------------GAAAACAGAT-----------GGCAGGTACTGATAGTATGGCAAGTGGACAGACAGAAAGTGAAAACGTGGAA---------------------------CAGCCTGGTGAAATACCATAA HIV_1_Group_P --------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAGGAAAGATCTGGC--------CTCCTGGGGG-------------CAAGAGGCC----------AGGCAACTATGTAC---------------------------------------------------AGAAACAA--------------GTACAACCAACAGCCCCACCTA---------------------------------------------------------------------------------------------------TGGAGGAGGACGAGATGACCCGGGACA--------------------------------------------------AGCAGAGGGAG{AG}AGGAGGAG------------------------------------GA{CG}GAGGAGGAATACCCTTTAACCTCC--CTCAG------------------ATCACTCTTTGGGACAGACCAGTAATACCAGTAAGAGTAGGGGGGCATATTTGTGAGGCTTTATTAGATACAGGAGCTGATGACACAGTAGTAG------ATAAATTACCTTT----------A---GAAGGAAGATGGAAACCAAATATGATAGGAGGAATAGGGGGTTTTATAACAGTA-AAA{CG}AATTTGAAG{AT}AGTTAAGGTAGAAAT---------------AGAAGGAAGAGAAGTTTACGGAACTGTATTAGT{AG}---GGCCCAACCC------------------------CAGTAAA{CT}ATAATAGGAAGAAATATTTTGACATTAATTGGATGTACTCTAAG------TTTCCCCA------TCAGCT---CCATAGAAATAGTACCAGT{AG}A{AT}ATTAAAGGCAGGAA{AT}GGATGGGCCTAAGGTAAAGC{AC}AT-GGCCCTT{AG}TCAAA{AG}GAAAAAATAGAAGCTTTAAGAG{CG}TATTTGTCAAGAGATGGAACAGGAAGGAAAAATAAC{AC}AAAATTGGGCCTGAAAATCCATATAACACCCCCATCTTTGCAATAAAAAAGAAAGATAGCAGCAA{AG}TGGAGGAAATTAGTA{GT}ACTTCAGAGAACTAAATAAGAGAACACAAGATTTTTGGGAAGTACAG{ACT}TGGGAATCCCTCATCCAGGAGGTCTTAAGAA{AG}AG{AG}AAATCAGTGACAGTATTAGATGTGGGGGATGCTTATTTCTCCTGTCCTTTAGATCCAGATTTTAGAAAATATACAGCTTTTACTATACCTAGTGTAAATAATGAGACACCAGGAATTAGATATCAGTATAATGTTCTGCCTCAGGGATGGAAAGGATCGCCAGCCATCTTTCAGTATTCAATGACTAAGATCTTAGAACCCTTTAGGGAGAGTAA{CT}CCA---GAAGTAGAAATCTATCAATACATGGATGATCTATATGTAGGGTCAGATTTGCCTTTGTCTGAACATAGACAGCGGGTAGAGAAACTTAGGGAACACCTCTATGTATGGGGGTTTACAACTCCTGACAAAAAACATCAAAA---------GGAGCCTCCTTTCCTCTGGATGGGATATGAGCTCCATCCTGACAAGTGGACGGTGCAACCCATCGTATTA------CCAGAAAA------GGAAGCTTGGACAGTAAATGACATCCAGAAGCTAGTAGGAAAGTTAAATTGGGCAAGTCAGATTTATCCAGGAATAAGGGT---------AAAAGAATT{AG}TGCAAACTAATTAGAGGAACTAAATCCTTAACAGAAGTAGTTGCTCTTACTAGAGAAGCAGAATTAGAACTAGAGGAAAATAAAGAAATTTTAAAAGAACCAGTGCATGGAGTTTATTACCAACCAGAAAAGGAATTAATAGTAGACATACAGAAACAGGGAGAGGGACAATGGACTTATCAGATATACCAGGAAGAACA---------TAAAA------ACTTGAAGACAGGGAAATATGCCAGGCAAAAGGCCACTCACACCAATGATATAAGGCAACTGGCAGAAGTAATACAGAAGACATCACAAGAAAGCATAGTAATATGGGGAAAATTACC-----------------CAAGTTTAGACTACCAG--------------TAAATAGAAGTATGTGGGAGACTTGGTGGTCAGACTATTGGCAAGCCA------CCTGGATACCTGAATGGGAATTTGTTAGTACACCCCCTCTTAT--------TAAGCTCTGGTATCAGCTAGA------------------AAAAGACCCCATACC------AGGAATAGAAACCTTTTATGTAGATGGGGCAGCAAACAGAGAGACTAAATTAGG{CT}AAAGCTGGATATGTAACAGATAGGGGTAGGCA{AG}AAGATAATCAAACTAGAAGGAACAACCAATCAAAAAGCAGAATTAGAAGCAGTGCTGTTAGCCTTAAAAG---AATCAGGAAAACAGGCTAACATAGTAACAGACTCCCAATATGT------------------{AG}TTAGGGATCATCTCAGCAACTCCAGAT-------CAAAGTGACTCCCCCCTAGTGCAAAAAATAATAGAAGAAATGACAAA{AG}AAGGAAAAAGTATACCTATCATGGGTACCAGCACACAAAGGC---ATAGGGGGTAATGAAGATATAGA{CT}AAA{CT}TAGT--------------------CAGTAAA-------------------------------------------------------------------------------------------------------------------GACATTAGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G{AG}GT----------------------GTTATTCCTAGAAGGCATAGA{CT}CAAGCACAG-GA{AG}GATCATGA-AAAATATCACAGTAATTGGAAAGCCCTAGCTAGTGACTTTGGCCTTCCACCAATAGTGGCAAAAGAGATTAT{CT}AACAATTGTCCCAAATGTCATGTAA------------AAGGGGAA------GCCATGCATGGACAGGTAGACTGCAGTCCA------------GGAATTTGGCA{AG}CTGGACTGTACCCACACAGAAGGA------------AAAATTATCCTTGTAGCAGTCCATGTAGCCAGTGGTTTCCTGGAAGCAGAAGTGATTCCAGCAGAAACAGGACA{AG}GAA---ACTGCATA{CT}TTTGTGCTCAAATTGGCAGCAA---GATGGCCTGTAAAAGTGATACACACAGACAATGGGCCTAACTT{CT}ACTAG{CT}GCTGCAGTAAA{AG}GCAGCCTGTTGGTGGCTTAATATAACTCATGAGTTTGGGATACCCTACAATCCCCAGAGTCAGGGAGTAGTGGAATCAATGAATAAAGAATTAAAGAAAATCATACTTCAAGTACGAGATCAAGCTGAACACTTAAAGACAGCAGTTCAAATG---------------GCAGTATTTGTTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACACTGCTGGAGACAGGATCATAGATATTATGGCTACACAAATACAAACAACAGAATTACAAA---AACAAATTTTAAAAATT---CAAAATTTTCGGGTCTATTAC---------AGAGACAGCAGAGACCC-----TATTTGGAAAGGACCAGCGACGCTTCTGTGGAAAGGTGAAGGGG-CAGTAGTCATACAA------GACAAAGGAGATATTAAAGTAGTCCCTAGGAGAAAAGCAAAAATAATCAGA------GATTATG---------------------------GAAAACAGAT-----------GGCAGGTGATGATTGTGTGGCAGATATCCAGAGAGAAAGTGAAAGCCTGGAA---------------------------TAG------------------ HIV_2_Group_A -----------------------------------------------------------------------------------------------------------------------------------------ACAGGCGGGTTTTTTAGGGATTG--------------GCCCCTGGGG-------------AAAGAAGCC----------CCGCAATTTCCCCG---------------------------------------------------TGGCCCAA-GTTCCA-CAGGGGCTAACACCAACAGCACCCCCAT------------------------------------------------------------------------------TGGATCCAGCAGTGGATCTACTGGAGAAATATATGCAGCAAGGGAAAA---------------GGCAGAGGG-----------AGCAGAGACAGAGACCATACAAAGAGGTGACAGAGGACTTACTGCACCTCGAACAAGGAGAGGCCCCATGCAGGGAGACAACAGAGGACTTGCTGCAC--CTCAA------------------TTCTCTCTTTGGAAAAGACCAGTAGTCACAGCACACATTGAGGGTCAGCCAGTAGAAGTTTTGTTAGACACAGGGGCTGATGACTCAATAGTAG------CAGGAATAGAATT----------A---GGGAGCAATTATAGCCCAAAAATAGTGGGGGGAATAGGAGGATTCATAAATACC-AAAGAATATAAAAATGTGGAAATAGAAGT---------------TCTAGGTAAAAGGGTAAGGGCCACTATAATGACA---GGCGACACCC------------------------CAATCAACATTTTTGGCAGAAATATTCTGACAGCCTTAGGCATGTCATTAAA------TCTACCAG------TCGCCA---AGATAGAACCAATAAAAATAATGCTAAAGCCAGGAAAAGATGGACCAAGATTGAGACAAT-GGCCCTTGACAAAAGAAAAAATAGAAGCACTAAAAGAGATCTGTGAAAAAATGGAAAAAGAAGGCCAGCTAGAGGAAGCACCTCCAACTAATCCTTATAATACCCCCACATTTGCAATCAGGAAAAAGGACAAGAACAAATGGAGGATGCTAATAGATTTTAGAGAGCTAAACAAAGTAACCCAAGATTTCACAGAAATCCAGTTAGGAATTCCACACCCAGCAGGATTAGCCAAAAAGAGAAGAATTACTGTACTAGATGTAGGGGATGCTTATTTTTCCATACCATTACATGAAGACTTTAGACAGTACACTGCATTTACTCTACCATCAGTGAACAATGCAGAACCAGGAAAAAGATACATATATAAAGTCTTACCGCAGGGGTGGAAAGGATCACCAGCAATTTTTCAGTACACAATGAGGCAGGTCTTAGAGCCATTCAGAAAAGCAAACTCA---GATGTCATTATCATTCAGTACATGGATGATATCTTAATAGCTAGTGACAGGACAGACTTAGAACATGACAAAGTGGTTCTGCAGCTAAAGGAACTTCTAAATAACCTAGGATTCTCTACCCCAGATGAGAAGTTCCAAAA---------AGACCCTCCATACCGCTGGATGGGCTATGAACTGTGGCCAACTAAATGGAAGTTGCAGAAAATACAATTG------CCCCAAAA------GGAGGTGTGGACAGTCAATGACATCCAAAAGCTAGTAGGTGTCCTAAATTGGGCAGCACAAATCTACCCAGGGATAAAGAC---------CAAACACTTGTGTAGATTAATTAGAGGAAAAATGACACTCACAGAAGAGGTACAATGGACAGAATTAGCAGAAGCAGAACTAGAAGAAAACAGAATTATCTTAAGCCAAGAACAAGAGGGACACTACTACCAGGAAGAAAAGGAGTTAGAAGCAACAGTTCAAAAGGATCAAGACAATCAGTGGACATATAAGATACACCAGGAAGAAA------------AAA------TTCTAAAAGTAGGAAAATATGCAAAAATAAAACATACCCATACCAATGGAGTCAAATTATTAGCACAGGTAGTTCAAAAAATAGGAAAAGAAGCACTAGTCATTTGAGGACGAATACC-----------------TAAATTTCACCTACCAG--------------TAGAGAGAGAGGTCTGGGAGCAGTGGTGGGATAACTACTGGCAGGTGA------CATGGATCCCAGACTGGGACTTCGTATCTACCCCACCACTGGT--------CAGACTAGCATTTAACTTAGT------------------AGGGGATCCTATACC------AGGCACAGAGACCTTCTACACAGATGGATCCTGCAATAGGCAATCAAAAGAAGGAAAAGCAGGATATGTAACAGATAGAGGAAGAGACAAGGTAAAAATACTAGAGCAAACTACCAATCAGCAAGCAGAGTTAGAAGCCTTTGCGATGGCACTAACAG---ACTCAGGTCCAAAAGCTAATATTATAGTAGACTCACAGTATGT------------------AATGGGAATAGTGGCAGGCCAACCAACA-------GAGTCAGAAAATAGAATAGTAAATCAAATCATAGAAGAAATGATAAAAAAGGAAGCAATCTATGTTGCATGGGTCCCAGCCCATAAAGGC---ATAGGGGGAAACCAGGAAGTAGATCATTTAGT--------------------GAGTCAA-------------------------------------------------------------------------------------------------------------------GGCATCAGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGT----------------------ACTGTTCCTAGAAAAGATAGAGCCTGCTCAG-GAAGAACATGA-AAAATATCATACCAATGTAAAAGAGCTATGCCATAAATTTGATATACCCCAACTAGTGGCAAGACAAATAGTAAACACATGTGCCCAATATCAACAGA------------AAGGGGAG------GCTATACATGGGCAAGTAAATGCAGAAGTG------------GGCACCTGGCAAATGGACTGCACACATCTAGAGGGA------------AAAATCATCATAGTAGCAGTACATGTTGCAAGTGGATTTATAGAAGCAGAAGTCATCCCACAGGAATCAGGAAGGCAA---ACAGCACTCTTCCTATTAAAATTGGCTAGCA---GGTGGCCAATAACACACTTACACACAGATAATGGTGCCAACTTCACTTCACAGGAAGTAAAGATGGTAGCATGGTGGGTAGGCATAGAACAAACCTTTGGAGTACCTTACAACCCACAAAGCCAAGGAGTAGTAGAAGCAATGAATCACCACCTAAAAAATCAGATAAGTAGAATTAGAGAACAGGCAAATACAGTAGAAACAATAGTACTAATG---------------GCAGTTCATTGCATGAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACTCCATCAGAAAGACTAATCAATATGATCACCACAGAACAAGAGATACAATTCCTCCAAG---CCAAAAATTCAAAATTA---AAAAATTTTCGGGTCTATTTC---------AGAGAAGGCAGAGATCA-----GTTGTGGAAAGGACCTGGGGAACTACTGTGGAAGGGAGACGGAG-CAGTCATAGTCAAG------GTAGGAACAGATATAAAAATAATACCAAGGAGGAAAGCCAAGATCATCAGA------GACTATGGAG---------------------GAAGGCAAGAGCT-----------GGATAGCAGTTCCCACCTGGAGGGTGCCAGGGAGAATGGAGAAGTGGCATAG------------------------------------------------ HIV_2_Group_B --------------------------------------------------------------------------------------ATGCTGGAAATGTGGACAGCAAGGACACATCATGTCAAAATGCCCAGAAAGACAGGCGGGTTTTTTAGGGTTCG--------------GCCCCTGGGG-------------AAAGAAGCC----------TCGCAATTTCCCCGTCCAGGCACCCCAGGGGATAGTGCCATCTGCGCCCCCGATGAACCCAGCATTCGGCATG-ACACCT-CAGGGTGCGATTCCATCTGCACCCCCTG------------------------------------------------------------------------------CAGATCCAGCAGAGGAGATGCTAAAGAACTACATGCAACTAGGGAAGA---------------AGCAGAAGG-----------AGAACAGAGAGAGACCCTACAAGGAGGTG---------------------------------------------------ACAGAGGATTTGCTGCAC--CTCAA------------------TTCTCTCTTTGGAGAAGACCAGTAGTCAAAGCAACTATTGAGGGTCAATCAGTAGAAGTATTACTAGACACAGGAGCTGATGACTCAATAGTAG------CAGGGATAGAATT----------A---GGCAGCAATTACACCCCAAAAATAGTAGGTGGGATAGGAGGATTTATAAATACC-AATGAATACAAAAATGTAGAAATAGAAGT---------------AGTAGGAAAAAGAGTAAGAGCAACAGTAATGACA---GGGGACACCC------------------------CAATAAACATTTTTGGCAGAAATATTTTAAATAGCTTAGGCATGACTCTAAA------TTTCCCAG------TAGCAA---GGATAGAACCAGTAAAAGTCCAGTTAAAGCCTGAAAAAGATGGGCCAAAAATCAGACAAT-GGCCCCTATCCAAAGAGAAAATACTAGCCCTCAAAGAAATCTGTGAAAAAATGGAAAAAGAGGGACAGTTAGAAGAGGCGCCTCCTACTAATCCATACAATTCGCCCACCTTCGCCATAAAAAAGAAAGACAAAAACAAATGGAGGATGCTAATAGATTTCAGAGAACTAAACAAGGTAACCCAAGAATTTACAGAGGTCCAGCTGGGTATTCCTCACCCAGCAGGACTGGCATCAAAGAAAAGAATAACAGTACTAGATGTAGGAGATGCCTACTTCAGTGTCCCACTAGATCCAGACTTCAGACAATATACAGCATTTACTTTGCCAGCAGTAAATAATGCAGAACCAGGAAAGAGATATCTTTACAAAGTCCTACCACAGGGATGGAAGGGATCCCCAGCAATTTTCCAGTACACCATGGCAAAGGTACTAGACCCTTTCAGAAAAGCCAACAAT---GATGTCACTATAATCCAGTACATGGATGACATTCTCGTGGCAAGTGACAGGAGCGATCTGGAGCATGACAGGGTAGTGTCTCAACTAAAAGAGCTATTAAATAACATGGGATTCTCTACTCCAGAAGAAAAGTTCCAAAA---------AGACCCTCCATTCAAATGGATGGGGTATGAGCTCTGGCCAAAGAAATGGAAACTGCAAAAAATACAGCTA------CCAGAAAA------AGAGGTTTGGACAGTAAATGACATTCAGAAGTTAGTGGGAGTATTAAATTGGGCAGCTCAACTTTTCCCGGGGATTAAGAC---------CAGGCATATATGTAAACTAATAAGGGGAAAGATGACCCTAACAGAAGAGGTACAATGGACTGAATTGGCAGAGGCAGAATTCCAGGAAAACAAAATCATCCTAGAACAAGAGCAGGAAGGATCCTATTACAAAGAAGGGGTACCTTTAGAAGCAACAGTGCAGAAAAATCTAGCAAATCAGTGGACATACAAGATTCATCAGGGAGATA------------AAA------TCCTAAAAGTAGGAAAATATGCAAAGGTTAAAAACACTCACACCAATGGAGTAAGACTATTGGCTCATGTAGTCCAAAAAATAGGAAAGGAAGCATTGGTCATCTGGGGAGAGATACC-----------------AATGTTCCATCTACCAG--------------TAGAAAGAGAGACATGGGATCAGTGGTGGACAGATTACTGGCAAGTAA------CCTGGATCCCAGAATGGGATTTTGTCTCAACCCCACCATTAAT--------AAGGTTAGCCTATAACCTGGT------------------CAAAGACCCCCTAGA------AGGAGTAGAAACTTACTACACAGATGGATCCTGTAACAAAGCCTCAAAAGAAGGGAAAGCAGGATATGTCACAGACAGGGGAAAGGATAAAGTTAAACCATTAGAACAAACAACAAATCAGCAAGCAGAGCTTGAAGCATTTGCACTAGCACTACAGG---ACTCAGGACCACAGGTCAATATCATAGTAGATTCACAATATGT------------------CATGGGAATAGTAGCTGCACAACCAACA-------GAAACAGAATCACCGATAGTAAGAGAAATAATTGAAGAAATGATCAAAAAGGAAAAAATATATGTAGGATGGGTACCAGCTCACAAGGGA---CTGGGTGGTAATCAGGAAGTAGACCACCTAGT--------------------GAGCCAA-------------------------------------------------------------------------------------------------------------------GGAATTAGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAT----------------------CCTATTTCTAGAAAAAATAGAACCAGCTCAA-GAAGAACATGA-AAAATATCATAATAATGTAAAAGAACTAGTCCATAAATTTGGGATTCCACAATTAGTGGCAAGACAAATAGTAAATTCCTGTGATAAATGCCAACAAA------------AAGGGGAA------GCTATTCATGGACAGGTAAATTCAGAACTA------------GGGACATGGCAAATGGACTGTACACATTTAGAGGGA------------AAGGTTATAATAGTGGCAGTTCATGTAGCCAGTGGATTCATAGAAGCAGAAGTAATACCCCAAGAAACAGGAAGACAG---ACAGCTCTCTTCCTGTTAAAGCTGGCCAGCA---GATGGCCTATCACACACCTGCACACAGACAACGGTGCCAACTTCACTTCACAAGATGTGAAAATGGCAGCCTGGTGGATAGGGATAGAACAAACATTCGGAGTGCCCTATAATCCAGAAAGTCAGGGAGTAGTAGAAGCAATGAACCATCATCTGAAAAATCAGATAGACAGAATTAGAGATCAGGCAGTATCAATAGAGACAGTTGTGTTAATG---------------GCAACTCACTGCATGAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACCCCTGCAGAAAGAATAGTCAACATGATAACTACAGAACAAGAAATACAATTCCTCCAAA---CAAAAAATTTAAAATTC---CAAAATTTCCGGGTCTATTAC---------AGAGAAGGCAGAGATCA-----ACTCTGGAAGGGACCTGGTGATCTATTGTGGAAAGGGGAAGGAG-CAGTCATCATAAAG------GTAGGGACAGAAATCAAAGTAATACCCAGAAGAAAAGCAAAGATCATAAGG------AACTATGGAG---------------------GAGGAAAAGAATT-----------GGATTGCAGTGCCGACGTGGAGGATACCATGCAGGCTAGAGAGGTGGCACAG---------------------TCTAATTAA------------------ HIV1_Group_U -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCTTTAGTTTCC--CTCAG------------------ATCTCTCTTTGGCAACGACCCATTGTCACAGTAAACATAGGAGGACAGCTAATAGAAGCCCTATTAGATACAGGGGCAGATGATACAGTATTAG------AAAATATAAATTT----------G---CCAGGAAAATGGAGACCAAAAATGATAGGGGGAATTGGAGGTTTCATCAAAGTA-AGACAGTATGATCAAATATCCATGGAAAT---------------CTGTGGAAAAAGAGCTATAGGTACAGTATTAGTA---GGACCTACAC------------------------CTGTTAATATAATTGGAAGGAACATGTTGACACAGATTGGTTGTACTTTAAA------TTTCCCAA------TTAGTC---ATATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAGGGTTAAACAAT-GGCCATTGACAGAAGAGAAAATAAAGGCATTAATAGAAATTTGTACAGACATGGAAAAAGAAGGAAAAATTTCAAGAATTGGGCCTGAAAATCCATACAACACTCCAGTGTTTGCCATAAAGAAAAAAGACAGCACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAAAGAACTCAAGACTTTTGGGAAGTTCAGCTAGGAATACCCCATCCAGCAGGTTTAAAAAAGAAGAAATCAGTAACAGTACTAGATGTGGGGGACGCATATTTTTCAGTTCCCTTAGATGAAGATTTTAGAAAATATACTGCATTCACTATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAACGTGCTACCACAGGGATGGAAAGGATCACCAGCAATATTTCAGTGTAGCATGACAAAAATTTTAGAACCCTTTAGAAAACAAAACCCA---GAACTAGTTATCTACCAATACATGGATGACTTGTATGTGGGATCTGACTTAGAGATAGGGCAACATAGAGTAAAAATAGAGGAATTGAGGGAACATCTATTGAAATGGGGATTCACTACACCAGATAAAAAACATCAGAA---------GGAACCTCCATTTCTTTGGATGGGATATGAACTCCATCCTGACAAATGGACAGTACAGCCTGTAACACTG------CCAGAAAA------GGACAGCTGGACTGTCAATGATATACAAAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTATCCAGGAATTAAGGT---------AAAGCAACTGTGTAGACTCCTTAGAGGAGCCAAGGCACTAACAGATATAGTGACATTAACTGAGGAAGCAGAACTAGAGTTGGCAGAAAACAGGGAGATTCTGAAAGAACCTGTACATGGGGTATACTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAACAAGGGAATGACCAGTGGACATATCAAATTTATCAAGAGCCATT---------TAAAA------ATCTGAAAACAGGGAAATATGCAAAAAGTAAGTCTACCCACACTAATGATGTAAAACAATTAACAGCTGCAGTGCAAAAGATAGCCATGGAATGCATAGTGATATGGGGAAAGACTCC-----------------CAAATTTAGACTCCCCA--------------TACAAAAAGAAACATGGGATGCATGGTGGATGGAGTATTGGCAGGCGA------CCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCTCTAGT--------AAAATTATGGTACCAGTTGGA------------------AAAAGACCCCATAGT------AGGAGCAGAAACTTTCTATGTAGATGGAGCAGCTAATAGAGAGACTAAACTAGGAAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAAATTGTTTCCTTAAATGGAACAACAAATCAAAAGACTGAGTTGCATGCAATCTATCTAGCCTTGCAAG---ATTCAGGATCAGAGGTAAACATAGTAACAGATTCACAGTATGC------------------AATAGGAATCATTCAGGCACAACCAGAC-------AGGAGTGAATCAGAGATAGTCAATTGGATAATAGAAAAGCTAATAGAAAAGGAAAAGATCTATCTGTCATGGGTACCAGCACACAAAGGA---ATTGGAGGAAATGAACAAGTAGATAAATTAGT--------------------CAGTTCT-------------------------------------------------------------------------------------------------------------------GGAATAAGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGT----------------------ACTGTTCCTAGATGGAATAGATAAGGCCCAA-GAAGAGCATGA-AAAATATCACAGCAATTGGAGAGCAATGGCTAATGATTTTAATCTACCACCTGTGGTAGCAAAAGAAATAGTAGCTAGCTGTGATAAATGTCAGTTAA------------AGGGGGAA------GCCATACATGGACAAGTAGACTGTAGCCCA------------GGGGTATGGCAACTAGACTGTACACATCTAGAAGGA------------AAGATTATCCTGGTAGCAGTCCATGTAGCCAGTGGCTATATAGAGGCAGAAGTTATCCCAGCAGAAACAGGACAGGAA---ACAGCATACTTTATATTAAAATTAGCAGGAA---GATGGCCAGTGAAAATACTACATACAGATAATGGCCCCAATTTCATCAGTGCAGCAGTTAAGGCGGCCTGTTGGTGGGCAAATATCAAACAAGAATTTGGGATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATCATAGGGCAAGTAAGAGAGCAAGCTGAACACCTTAAGACAGCAGTACAAATG---------------GCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGAGGGTACAGTGCAGGGGAAAGAATAGTAGACATGATAGCAACAGACTTACAAACTAAAATATTACAAA---AACAAATTACAAAAATT---CAAAATTTTCGGGTTTATTAC---------AGAGACAGCAGAGACCC-----AATTTGGAAAGGACCAGCAAAACTACTCTGGAAAGGTGAAGGAG-CAGTAGTAATACAA------GACAATAGTGACATAAAGGTGGTTCCAAGAAGAAAAGCAAAGATTATTAGG------GATTATG---------------------------GAAAACAG----------------------------------------------------------------------------------------------------------------- Maedi_Visna_virus -------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCCAT----------CATTGTGGAA-------------AAAGAGGAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGCAAAAGGACTGCC---------------GGCAGAAGA-----------------------AACAGCAGGGAAACAACAGGAGG------------------------------------GGGCCACGTGTGGTGCCGTCCGCGCCC--CCTAT------------------GTTGTAACAGAAGCACCACCCAAAATAGAAATAAAAGTAGGAACAAGGTGGAAAAAATTATTAGTAGATACAGGGGCAGATAAAACTATAGTAACATCCCATGATATGTCA----------------GGGATACCAAAGGGAAGGATAATATTACAGGGCATAGGGGGAATAATAGAAGGA-GAAAAATGGGAACAAGTACACTTGCAATA---------------TAAAGATAAAATAATCAGAGGTACCATAGTGGTG---TTAGCTACGAGTC---------------------CGGTAGAAGTATTAGGAAGAGATAATATGAGAGAATTGGGAATAGGATTAAT------TATGGCAAATTTAGAAGAAAAGAAAATTCCCAGTACAAGAGTAAGATTAAAAGAGGGATGTAAGGGACCCCACATAGCGCAAT-GGCCTTTGACGCAAGAAAAATTAGAGGGATTAAAAGAAATAGTAGACAGATTAGAGAAGGAAGGGAAAGTAGGAAGAGCGCCCCCACACTGGACTTGTAATACCCCTATATTTTGTATTAAGAAGAAATCAGG---AAAATGGAGGATGTTAATAGATTTTAGAGAATTAAATAAGCAAACAGAAGATTTAGCAGAAGCACAGTTAGGGTTACCGCATCCAGGAGGATTACAGAGAAAGAAACATGTAACAATATTAGATATAGGAGATGCATATTTTACAATACCATTATATGAGCCATATAGACAATATACATGCTTTACCATGTTAAGTCCAAATAATTTAGGACCATGTGTAAGATATTATTGGAAAGTGTTACCACAAGGATGGAAATTAAGTCCTGCAGTGTATCAATTTACAATGCAAAAAATATTAAGAGGATGGATAGAAGAACACCCT---ATGATACAATTTGGAATATACATGGATGATATCTATATAGGGAGTGATTTAGGACTAGAAGAGCACAGGGGTATCGTGAACGAACTAGCATCATATATAGCGCAATATGGATTCATGCTGCCTGAAGATAAGAGGCAAGA---------AGGATACCCGGCTAAATGGCTTGGATTTGAATTGCATCCGGAGAAATGGAAATTTCAAAAACATACGCTC------CCAGAGATTACAGAAGGACCCATAACCTTGAATAAACTACAGAAATTAGTAGGAGATTTAGTTTGG---AGACAATCCCTAATAGGAAAAAGCAT---------CCCAAATATCTTAAAATTAATGGAAGGAGATAGGGCTTTACAAAGTGAAAGATACATAGAGAGTATACATGTAAGAGAATGGGAAGCCTGTAGACAAAAGCTGAAGGAAA---TGGAAGGAAATTATTATGATGAAGAGAAGGATATCTATGGGCAACT---AGATTGGGGAAATAAAGCAATAGAATACATAGTATTTCAAGAAAAAGG---------AAAAC------CTTTATGGGTAA------ATGTAGTACATAGTATTAAGAATTTGAGTCAAGCCCAACAAATTATCAAAGCAGCACAAAAACTGACACAAGAAGTAATAATAAGAACAGGCAAGATACC-----------------CTGGATTTTGTTGCCGG--------------GAAGGGAAGAAGATTGGATATTAGAGTTAC---AAATGGGAAACATAA------ATTGGATGCCATCATTTTGGTCATGTTATAAAGGCTCGGTGAG--------GTGGAAAAAGAGGAATGTAAT------------------AGCGGAAGTAGT---------CCCAGGACCAACATATTATACCGATGGAGGA------AAGAAAAATGGGCGGGGAAGCCTGGGGTATATTACCTCCACAGGTGAA---AAGTTTAGAATACATGAAGAAGGGACAAATCAGCAGTTAGAATTGAGGGCCATAGAAGAGGCATGTAAAC---AGGGACCAGAAAAAATGAATATAGTAACAGATAGCAGGTATGC------------------ATATGAATTTATGTTGCGGAACTGGGACGAAGAA-GTAATAAGAAACCCTATACAAGCGAGAATCATGGAATTAGTGCATAATAAAGAAAAAATAGGGGTACATTGGGTGCCTGGACACAAGGGG---ATTCCTCAAAATGAAGAAATAGATAGGTATATCTCAGAAA------TATTTTTAGCAAA---------------------AGAGGGAAGAGGGATTTTACAAAAAAGGGCAGAAGAT------GCTGGATATGACTTAATATGTCCAC---AGGAGATAAGCATTCCGGCGGGGCAAGTGAAAAGGATAGCAATTGACTTGAAAATAAATTTGAAAAAGGACCAGTGGGCCATGATAGGGACCAAAAGCAGTTTTGCAAATAAGGGAGTATTCGTACAAGGAGGTATCATAGATTCGGGATA-TCAAGGAACAATACAAGTAGTGATATATAATAGTAATAATAAAGAAGTAGTAATACCACAGGGAAGAAAATTTGCACAGTTGATCCTCATGCCTCTAATACATGAAGAGTTGGAGCCAT---GGGGAGAAACAAGAAAAACAGAAAGAGGGGAACAAGGATTTGGATCAACAGGGAT----------------------GTATTGGATAGAAAATATTCCCCTAGCAGAA-GAAGAGCATAA-CAAATGGCATCAAGATGCTGTGTCCTTGCATTTAGAATTTGGGATTCCCAGGACAGCTGCAGAAGATATAGTTCAACAATGTGATGTGTGTCAAGAAA------------ATAAAATGCCTAGTACATTAAGAGGCAGTAATAAAAGGGGCATA------------GACCATTGGCAAGTAGACTATACCCACTATGAAGAC------------AAGATAATATTGGTCTGGGTAGAAACAAATTCAGGACTAATCTATGCAGAGAGGGTAAAAGGAGAAACAGGACAAGAA---TTTAGGGTGCAAACTATGAAATGGTATGCGA---TGTTTGCCCCGAAATCATTGCAGTCTGATAACGGACCAGCATTTGTAGCAGAATCTACTCAGCTCTTAATGAAATATTTGGGCATAGAACATACTACAGGGATCCCCTGGAACCCACAATCTCAAGCATTAGTAGAGAGAACACATCAGACGTTAAAGAATACATTAGAAAAACTTATACCTATGTTTAACGCGTTTGAATCAGCCCTCGCAGGG---------------ACCCTCATTACTCTAAATATAAAAAGAAAGGGTGGGCTAGGGACAAGCCCTATGGATATATTTATATTTAATAAGGAACAACAAAGAATACAGCAACAAAGTAAATCAA---------------AACAA---GAAAAAATTCGATTTTGTTATTACAGAACAAGAAAAAGAGGGCATCC--AGGAGAGTGGCAAGGACCAACACAGGTACTTTGGGGCGGGGACGGTG-CGATTGTAGTGAAAGACAGAGGCACAGATAGATATCTGGTGATAGCTAACAAAGATGTTAAGTTCATACCGC------------------------------------CACCAAAAGAAAT-------ACAAAAAGAATAA------------------------------------------------------------------------------------------- Mason_Pfizer_Monkey_Virus -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAA----------------------------------------------------------------------------------------CTGCGGCCATTGACATACTTGCAC-----------------------CCCAACAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGCTGAACCCATCACGTGGAAATCAGACGAACCTGTCTGG-------------------------------------------------------------------------------------------GTTGATCAGT-GGCCATTAACCAATGACAAACTTGCTGCTGCCCAACAGTTAGTGCAAGAACAGTTAGAGGCAGGACATATTACTGAAAGTAGTTC------TCCCTGGAACACTCCCATATTTGTTATAAAAAAGAAATCTGG---TAAATGGAGGCTCTTACAAGATTTACGAGCCGTTAATGCCACTATGGTATTAATGGGAGCTTTACAACCTGGATTACCCTCCCCGGTGGCTATCCCACAAGGGTATCTTAAAATAATTATTGATCTCAAGGATTGTTTCTTTTCTATTCCCCTTCATCCTAGTGACCAAAAAAGATTTGCCTTCAGCCTACCATCCACAAATTTTAAAGAACCTATGCAACGTTTTCAGTGGAAGGTTTTACCACAAGGTATGGCCAACAGTCCTACCTTATGTCAAAAATATGTGGCCACAGCCATACATAAGGTTAGACATGCCTGGAAA---CAAATGTATATTATACATTACATGGATGACATCCTAATAG---CTGGTAAAGATGGACAACAAGTTTTGCAATGCTTTGATCAACTCAAACAAGAGTTGACTGCAGCTGGGTTACATATAGCCCCAGAAAAAGTTCAATT---------ACAAGATCCCTACACATATTTAGGATTTGAACTTAATGGTCCTAAAATCACTAATCAAAAAGCAGTCATT------CGTAAAGA------TAAATTACAGACTCTTAATGATTTCCAAAAACTTTTAGGAGACATCAATTGGCTCAGAC---CATATCTAAAACTCACTACTGGAGACTTAAAACCCTTATTCGACACCCTTAAAGGAGACTCTGACCCCAATTCCCATAGATCCTTATCAAAAGAAGCTCTTGCCTCACTTGAAAAGGTAGAGACAGCCATTGCAGAACAA----------TTCGTTACTCACATAAATTATTCACTACCATTAATTTTCCTCATATTCAACACAGCCCTGACACCTACTGGTTTGTTTTGGCAAGACAA--------------TCCTATTATGTGGATCCACCTGCCTGCATCCCCTAAAAAGGTGTTACTTCCCTACTACGACGCTATAGCAGATTTAATCATACTAGGGAGAGACCATAGTAAAAAATATTTTGGAATTGAACCCTCTACAATCATACAACCATATTCTAAGTCTCAGATTGATTGGTTAATGCAAAACACTGAAATGTGGCCAATTGCCTGTGCCTCCTTTGTTGGCAT------CCTAGATAACCATTATCCACCAAATAAACTTATCCAGTTCTGTA------------AACTACATACCTTTGTTTTCCCTCAAATCATTAGTAAAACACCCTTAAA------CAATGCCTTATTAGTTTTTACTGATGGCTCTTCCACT---------------GGGATGGCCGCATATACTCTTACTGATACCACCATCAAATTCCAAA---CTAATCTTAATTCGGCTCAACTAGTAGAACTACAAGCTTTAATTGCAGTCTTATCAGCCTTCCCTAATCAACCTCTTAATATTTACACTGACAGTGCTTACTTAGCCCACTCAATACCCCTACTTGAAACTGT----------------------CGCACAAATTAAACACATATCAGAAACAGCTAAACTGTTCCTACAGTGCCAGCAACTCATATACAATAGATCCATACCTTTTTATATTGGACATGTCAGGGCCCATTCTGGACTACCTGGACCCAT---------------AGCTCAAGGCAA------------------------------------------CCAACGAGCTGACTTG---------------------------------------------------------GCAACTAAAATCGTGGCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAACATAAAC------------AC--------------------AAACCTCGAATCAGCTCAA-AATGCTCATAC-CTTACATCACCTCAATGCCCAGACTTTAAGACTTATGTTTAACATTCCTAGAGAACAAGCTAGACAAATTGTTAAGCAATGTCCTATATGTGTAACTT------------ATCTACCA------GTCCCTCATTTAGGAGTTAATCCTAGGGGATTATTTCCCAACATGATTTGGCAAATGGATGTTACACACTACTCAGAATTTGGCAATTTAAAATATATTCATGTATCTATAGATACATTCAGTGGATTCCTACTGGCCACTCTACAAACAGGAGAAACTACAAAACATGTCATAACCCATTTACTCCATTGCTTCTCTATTA---TTGGACTCCCTAAACAAATTAAAACGGATAACGGTCCTGGATACACCTCTAAAAATTTTCAAGAATTTTGCTCCACACTTCAAATTAAACATATTACTGGAATCCCCTATAACCCCCAAGGCCAAGGAATAGTTGAAAGAGCCCACTTATCTCTTAAAACCACCATTGAAAAGATAAAAAAGGGGGAATGGTACCCTAGGAAGGGTACCCCCAGGAACATCCTCAATCATGCACTCTTTATTCTAAATTTTTTAAATTTAGATGATCAAAATAAATCAGCAGCTG-----ATCGTTTTTGGCATAATAACCCCAA---------------------------AAAACAATTTGCCATGG---TAAAATGGAAAGATCCATTAG---------------------------ATAATACATGGCATGGCCCCGATCCAGTGTTAATTTGGGGCAGAGGTT-CAGTCTGTGTTTACTCTCAAACCTATGATGCCGCTAGATGGCTACCAGAACGGTTAGTAAGACAGGTGTCT-------------------------------------AACAATAACCAATC-----C----AGGGAGTGA------------------------------------------------------------------------------------------- Ovine_lentivirus -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCAACATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAGGGAAACAGCAGGAGG------------------------------------GGGCCACGTGTGGTGCCGTCCGCGCCC--CCTAT------------------GTTGTAACAGAAGCACCACCAAAGATAGATATAAAGGTAGGGACAAATTGGAAAAAGGTATTAGTAGATACTGGGGCAGATAGAACTATAGTAAGATATCATGACAATTCG----------------GGAATACCCACAGGGAGAATAAAACTACAAGGGATAGGAGGAATAATAGAAGGA-GAAAAATGGGATAAAGTAGTAATACAATA---------------TAAAGAAAAAAGAATAGAAGGGACAATAGTGGTA---CTGCCCAGTAGTC---------------------CAGTAGAGGTATTAGGAAGGGATAATATGGCAAAATTAGACATAGGAATAAT------TATGGCAAATTTAGAAGAAAAGAAAATTCCCATTACACAGGTAAAATTAAAAGAAGGCTGTAAGGGTCCTCATATAGCACAAT-GGCCTTTAACTCAAGAAAAATTAGAAGGCTTAAAAGAAATAGTGGACAAGTTAGAAAAGGAAGGAAAGGTAGGTAGAGCGCCGCCACATTGGACATGTAATACTCCTATATTTTGCATCAAGAAAAAATCAGG---GAAATGGAGAATGTTAATAGATTTTAGGGAATTAAATAAGCAAACAGAAGATTTGGCGGAGGCACAATTAGGTTTGCCGCATCCAGGGGGATTACAGAAAAAGAAGCATGTAACAATACTTGACATAGGGGATGCATATTTTACAATACCATTGTATGAGCCATATAGACCATATACATGTTTTACCATGTTAAGTCCAAATAATTTGGGACCATGTACACGGTATTATTGGAAAGTACTACCACAAGGATGGAAGTTGAGTCCCTCAGTGTATCAATTTACAATGCAAGAAATATTAAGGGATTGGATAGCGAAACATCCT---ATGATACAATTTGGAATATACATGGATGATATTTATATAGGGAGTGATTTGGATATAATGAAACACAGAGAGATAGTAGAAGAACTAGCTAGCTATATTGCCCAGTATGGATTTATGTTACCAGAAGAAAAGAGACAAGA---------AGGGTATCCAGCAAAGTGGCTTGGATTTGAATTGCACCCAGAGAAATGGAGATTTCAGAAACATACACTT------CCAGAAATAAAGGAAGGGACCATAACATTAAATAAATTACAAAAATTAGTAGGAGATTTAGTCTGG---AGACAATCATTAATAGGAAAAAGCAT---------ACCTAATATACTAAAGTTAATGGAAGGGGATAGGGCGCTCCAAAGTGAAAGAAGGATAGAGCTCAGACATGTAAAGGAATGGGAGGAATGTAGAAGAAAATTAGCAGAAA---TGGAAGGAAATTACTATGATGAAGAGAAGGATGTATATGGACAAAT---AGATTGGGGAGATAAGGCAATAGAGTACATAGTGTTTCAAGAGAGAGG---------AAAAC------CTTTATGGGTAA------ATGTAGTACATAATATTAAAAACCTCAGTCAATCACAGCAAATTATTAAAGCAGCACAAAAACTTACGCAAGAGGTAATAATAAGGATAGGAAAAATACC-----------------ATGGATACTATTACCAG--------------GAAAGGAGGAAGATTGGATCTTAGAGTTGC---AAATAGGAAATATAA------CATGGATGCCCTCATTTTGGTCGTGTTATAGGGGGTCAATAAG--------GTGGAAAAAGAGAAATGTAAT------------------AACAGAAGTAGT---------AGAAGGCCCGACATATTATACAGATGGAGGT------AAGAAGAATGGAAAAGGAAGTCTAGGATTCATTGCCTCTACAGGCGTT---AAATTTAGAAAACACGAAGAGGGAACAAATCAACAATTAGAATTAAGAGCAATAGAAGAGGCGTGCAAAC---AGGGACCAGAGAAAATGAATATAGTAACAGATAGCAGATATGC------------------ATATGAATTTATGAGAAGAAATTGGGATGAAGAA-GTTATAAAGAACCCAATACAGGCTAGAATTATGAAATTAGTGCATGATAAGGAACAGATAGGGGTACATTGGGTACCTGGACACAAAGGA---ATTCCTCAAAATGAAGAAATAGATAAATATATTTCAGAAA------TATTTTTAGCAAG---------------------AGAAGGAAGCGGAATTCTTCCAAAAAGAGCGGAAGAT------GCAGGGTATGATCTCATATGTCCGC---AGGAAGTGTGTATTCCAGCGGGGCAAGTAAGAAAAATTCCAATTAATCTAAGAATAAACTTAAAGGAGGATCAGTGGGCCATGGTAGGGACGAAAAGTAGTTTTGCAAGCAAGGGAGTATTTGTACAAGGGGGAATAATAGATTCAGGATA-TCAAGGCATTATACAGGTAGTAGTATATAACAGCAATGACAAGGAAGTCATTATCCCACAAGGGAGAAAATTTGCACAATTAATTCTCATGCCTTTAATACATGAAGACCTAGAAGCTT---GGGGGGAAACTAGAAGGACAGAAAGAGGAAACCAAGGATTTGGATCAACGGGAGC----------------------ATATTGGATTGAAAATATTCCCCTAGCAGAG-GAAGATCACAG-TAAATGGCATCAAGATGCTGGGTCATTACACTTAGACTTTGGGATACCCCGAACTGCAGCTGAGGATATTGTACAACAATGTGAAGTATGTCAAGAAA------------ATAAAATGCCCAGCACAATAAGGGGAAGCAATAGGAGAGGAATA------------GATCATTGGCAAGTAGACTATACACATTATGAGGAC------------AAGATAATATTAGTATGGGTAGAAACAAATTCAGGATTAATATATGCAGAAAGAGTAAAAGGGGAAACAGGACAAGAA---TTTAGAATCATGACTATAAGGTGGTATGGTC---TGTTTGCCCCAAAGTCATTGCAGTCTGACAATGGACCAGCATTTGTAGCAGAGCCAACACAGCTACTAATGAAATATTTGGGGATAACACACACAACAGGGATACCATGGAATCCCCAATCGCAAGCACTAGTAGAAAGAACTCATCAAACTCTAAAAAATACAATAGAAAAATTTGTTTCTATGTTTGCCTCATTTGATTCAGCAATAGCCGCA---------------GCATTAATCACACTAAATATAAAAAGAAAGGGTGGGCTAGGGACAAGCCCTATGGATATATTCATATTTAATAAGGAACAGCAAAGAATACAACAGCAATCTACAAGAA---------------ATCAA---TCAAAATTTCGATTTTGTTATTACAGAGTCAGGAAAAGAGGACACCC--AGGCGAGTGGCTGGGACCAACACAGGTACTCTGGGAAGGGGAAGGAG-CAATCGTAATAAAAGATAAAAATCTAGAAAAGTATTTAGTCATAGCAAAAAAGGATGTTAAGTTCATACCGC------------------------------------AACCAAAAGAAAT-------ACAAACAGAATAA------------------------------------------------------------------------------------------- PSIVfdl_Fat_Tailed_Dwarf_Lemur ----------------------------------------------------------------------------------------------------------------------------------AAAACGGGAGGAGGAGCCCATCAGGG----------------GCCCCACTAGAGATGACA-----GCAGTGCAGCCCTC---TGCACCAGAACCTCCCCCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGGGGGGAGATGGGGTTGTACCCCACC--CTCAA------------GGAATTATTAAATTAGATCACCAGCCCCTGGTGACTCTGAAGGTAGGGGAACAATCGGTCACCCTCCTGATAGACACCGGGGCTGACCATACAATTATCCACCCTAAAGATTGGAAACC----------AGTAGGAATGGAAGAGGGGATAATTAACATTGGGGGAATTGGAGGTTCTCAAAAGGGG-GTATTATACAAACAAGTGCCTATTACTCT---------------AGCAGATAGGCAGATACAGGGAACTGTCATAAGG---GCAGTGACCC------------------------CTATAAATTTACTAGGGAGGGACAATTTAGTATCACTAGGAATTGGAGTAGTGATGCTAATGGCACAGATGTCAATAA---AAATAGTGCCGCTGCCAGTTGAGTTAATGCCTGGCTGTGATGGGCCAAGAGTAAAACAGT-GGCCCCTTACGCAAGAGAAATATCAGGCTCTTGCTGGGATAGTATCTAAATTAGAAAAAGAGGGGAAAGTTAGTTGAGCAGAGGTAGGTAATCCCTACAACACTCCGGTGTTTGCCATTAAGAAAAAATCAGG---CAAATGGAGAATGCTCATTGACTTTCGAGTGCTAAATGCTCGAACCAAAAAGGGGGCTGAACTTCAGCTGGGCTTGCCCCACCCGGCAGGCCTACAAAAGAAAGATAATGTCACCATACTAGATATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PSIVgml_Grey_Mouse_Lemur -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCACCGGCCCCTAGTGACTCTGAAGGTAGGGAGACAATCGGTCACCCTCCTGATAGACACCGGGGCTGACAATACAATTATCCATCCTAAAGATTGGAAACC----------AGTAGGAATGGAAGAGGGGATAATTAACATAGGGGGAATTGGAGGTTCTCAAAAGGGG-ATATTATACAAACAAGTACCTATTAGTCT---------------AGCAGATAGGCAGATACGGAGAACTGTCATAAGG---GCAGTGACCC------------------------CTATAAATTTACTAGGGAGGGACAATTTAGTATCACTAGGAATTGGAGTAGTGATGCTAATGGCACAAATGTCAGTAA---AAATAGTGCCGCTGCCAGTTGAGTTAATGCCTGGCTGTGATGGGCCAAGAGTAAAACAGT-GGCCCCTTACGCAAGAGAAATATCAGGCTCTTGCTGAAATAGTATCTAAATTAGAAAAAGAGGGAAAAGTCAGTATAGCAGAGGTAAGTAATCCCTACAACACTCCGGTGTTTGCCATTAAGAAAAAATCAGG---CAAATGGAGAATGCTCATTGACTTTCGAGTGCTAAATGCTCGAACCAAAAAGGGAGCTGAATTTCAACTGGGCTTGCCTCACCCCGCCGGCCTACAAAAAAAAGATAATGTCACCATACTAGATATTGGTGATGCTTATTTTACCATACCATCGGACCCCACATTTAAAAAGTACACTGCCTTTACTCTAATACCACCTAATAATCAGGGACCAGCCAAGAGATTTGTGTTTAATTGTCTACCACAAGGGTGGGTGTGTAGTCCAGCCTTTTACCAAAGGACTATGAGTGACATCTTACAACTATGGAAACAAGCTCATCTT---GAGGTCATGTTATATGTCTACATGGATGACCTTCTAATCGGGACAGACCTCCCCTTGAGGGAGCATAGAAGGCTGGTCCAAGAGCTTAGGAGTATGCTTCTTGGCTGGAGCTTTGAAACTCCTGAAGAAAACGTGCAGGA---------CCAGTGGCCGCTACAGTAGATGGGATATGAGTTACACCCTAATAATTGGCAGTTGCAGGTCCGAAAATTA------GAGTTACC------AGATCACCCCACTTTAAATGAAGTCCCAAAACTGGTGGGAATTATTAATTGGGCTAGTCAAATTATTTCAGGGCTTAAAAT---------AAAGAAGCTTACTGCTATGATGGCAGGGAATCAGGATCTCAATAGAAAGATAGAATGGACTAAGGAAGCTAGAAAGGAAGCTGAAGAGGCAGCTAAGCTGCTCTAGGAGCTCCCAGCAGGGGGGTATGTCGACCCCTTGAAACAGGTGGAGGCTAGAATAGCTTTTGTAGGTTTCCTCGAGGTAACCTACGACGTCCATCAGGAGAATATCA------------------TCCTTTGGTGTGGCAGA---GTAGGGTCCAGCAAAGCTTATTGTAACCGG-TGGATCTGTATGTAAAAGCAGCAATAAAAATAGGCAGGGAAACCTTGATTAGGCTAGGAGTGGTCCC-----------------CATACTCACTGTCCCAG--------------TAGCAAAAGATATCTGGGATAGTTTTGCATGGACTGCAGGGGAGGTAG------CATGGTTCCCAGAAGTAAGACATCAGGCACCTCCTCTAATAGT--------TGAGAGATGGATGAAAATGGT------------------ATCAGAACCCATTAA------GGGGGCAAGAACTTGGTATATCGATGGATCT---AAGAAACGGGCCCAAAAAGCTAGAGCAGGAATTTGGACAGAGGGAGAGAAGGCACAAGTACAGGAACTGGAG---GGCTCAAATCAAAAAGCAGAATTGGCAGCCTTATTGTATGCCTTACAGC---AGGAAGACCAAGAATTAAACATTATCACTGATTCTCAATATGT------------------AATGAAAGTGCTGCGACTCGTGCCATGG-------GTTAGCGATTCTCCCTTGGTGCAGAGCATCATACAAGCAGTAGAGAAAAAACAGGCTATCTATTTAGATTGGGTGCCAGGTCATAAGGGA---ATCCCAGGAAATCATAAAATTGATGAAGAAATTCAATAT-------------TGGCAAG-----------GTTTGGTTATCCAAGGCACAGGTATCCTTCCTAAAAGAGAAGAGGAT------GTAGGCTATGATTTACAAATTCCAG---AAGATGTGTACCTGCAGGGCTTGGAAAGGCGGTCCGTTCCGTTGAACTTGTGAGTTCAATGGGAAAAAGACCAATGGGGGTTGATTGTGGCAAAGTCCTCTATGGCTCAGATGGGGGTGATTCCTTTAGGTGGAGTCATAGATTCTGGGTA-TAGAGGACCCATCATCATCATCCTATGGAATCTTAATAGAAAGGCAGTACTCCTTAAAGCCGGAAAAAGAGTGGCTCAACTAGTTATAATGTCTCTACTTCATGAGGAGTTGCAACAAGTTCAGCAGGTCAAAATTGACACGGCCCGAGGTGAAGGAGCATTTGGTTCCACTGGAAC----------------------CTATTTCTTGGAGGCCATCCCTAGAGCAGAA-AGTGATCATGA-ACTATGGCACTCGGGGGTTAAAGCTCTCATGCAGGATTTTGGAATATCTCAAATGGTGGCTAAAGCCATCGTGCATAAATGTCCTAATTGCCAAGGGA------------AAGGGTCT------GCCATTACAGGGGTGGTGGATTACACCCCG------------GGGACATGGCAGATGGATGTTACCCACTGGGAAGGA------------CATAAACTGTTAGTAGCAGTTGAGACTGCTTCTGGGTTAACATGGGCTAAAACTATCCCTGATGAAACAGCCAAAACC---ACTTTGTTGGCTACATTAGAACTGCACAGTG---TTTTCAAAGTGAGTCATTTACATACAGATAATGGGCTTAATTTCACTGCTGAAAGATTTACTAATGCTCTTGCCTGGTTAGGCATTAAGCACTCCACAGGCATCCCCTATAATTCTCACTCTCAAGGGGTAGTGGAATCTACCAATAAGTTGTTGAAAGAAATGCTCCACAAAATTAGACCCAAAATGGAGACAGTTCACGCGGCTGTCTATATG---------------GCTTTATTTGTCATTAATTTTAAACAAAGGGGTGGAGTGGGAGGTACAACTAGATATGAAAGACATTTAGACATGGGATTGGAAGACTTACAAAATTACCATTTCAAAA----------------ATTTG--GACTCGTACCATGTTTACTTT---------AAACAGCCACCTCAAAA-----AACCTGGCAGGGACCAGCTCGTCTCCTTTATAAGGGGCAGGGAG-CAGTGGTCTGCGAG------GATCAAGGAAAGACAATAGCAGTACCTAGACGCTACTGCAAGATCATAACA----------------------------------------GGAGGGGAAT-------------------------------------------------------------------------------------------AG------------------ RELIK_European_Rabbit ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGGAAAGCGGGGGGC----------AATGCCCCCCGGACCATGATGGCGTCTGCCCAGAAT---------------------------------------------------------ATCCAG-TCATCTATCCCACCATCTGCCCCACCCCTGGGGG---------------------------------------------------------------------------------------AAACACAGACGGAAGCCCCTGCGACAGGGATCT---------------ACCCGAAAC-------------------------------------------------------------------------------------------------------------TACCAAA------------------ATAGAATTAAAACAAAGACCTACCTTAAAGGTAAACCTAGGGGGGAAAGATATAATAGGGCTGTTAGACACAGGGGCTGATTTAACTATAATAAGGGAACAAGAGGCTAAAGGAATAAA----AGAAGGGATAACAGAAGGATGGCAAAATATAGAGGGGGTGGGAGGGTGCTCTAAATTACAAAAAATATCACAGGTTACACTGAAAGAC-------------AAAAAAGGAAGGAAGACAAAGACATCCATTCTAATATCCCCAGATATTC------------------------CCATCAATATATTTGGAAGGGATATCTTAACAAAGTTAGGGGTAGCCCTAAT------TATGGCACAACTCTCTACCC---AAATTACCCCAATAAAGATAAAAATGAAAGATCCTAATAAAGGTCCCTTGATTCCCCAAT-GGCCTTTAACCAAAGAAAAATTAGAAGGAATTAAGGAAATAACAAAAAGACTACTAGAGGAAGGGAAGATATCTCCAGCAGACCCAGATAATCCCTGGAACACCCCAATATTTGTGATAAGGAAAAAATCAGG---TAAATGGCGAATGTTAATAGATTTTAGAGAACTTAATAAATTAGTAGATAAGGGAAGAGAAGTTCAGTTAGGTATTCCACACCCTGGAGGATTACAAAGAAGAAACCAGGTTACTGTTTTGGATATAGGGGATGCTTATTTTACCATCCCTCTGGATAAGGACTTCAGGCAGTACACTGCCTTTACCATCCCAGAGGTTAATAATCAAGGTCCAGGCCATAGGTATGTTTGGAATTGCCTCCCACAAGGTTTTGTATTAAGTCCCTTGATTTACCAAAGTACACTAAGGGACATACTAGAGCCCTGGAGACAACAACACCCA---GAAGTAGATCTTTATCAATATATGGATGATATATATATTGGGTCCGATCATTCTCCAAAACAACACAAACTGATCATAGAAAAACTCAGAAAAATGCTTTTAGAAAAGGGATTCGAGACCCCAAATGAGAAATTACAAGA---------ACAATATCCCTATTCATGGATGGGGTACTTGTTGCACCCAAATAAATGGACATTGCAAAAACTAGAGTTG------CCAGAACTTCC---AGAGAAGCCCACCCTAAACGAACTACAAAAGTTAGTAGGACTCCTTAATTGGATGACCCAAGCTGTTCCTGGAATTAAGAC---------AAAACCTTTTACTCTTATGATGAAGGGAAACCAAGAGTTAAATAGTATCAGGGAATGGACCCCCGAAGCAAGACAGGAGTTACGGACTATAAGGAGGCTATTACAAGAACACAAACCTTTAAGCTACTGGGACCCCAGCAAGGAAGTTTACTGTACAGT---TATGATGGGAGGTAACACCATAAATTATAAAGTGCACCAAGGATCTG------------ATA------TCCTTTGGGTAGGTAGACAGGAATTTCCAAAGGTATTAGCAGCATCTCCTCTAACTAGAGCCCTAAAATGTCTACATAAAATCAGACAAGAATGTATTATACGAATAGGGCAAGAACC-----------------TATATATAGGTTACCTA--------------TAAAAAAAGAGGATTTAGATGTTATGATTCAGGAAGACCCCTACTTGC------ATTGGGTACCACAGATTGAATGTATCCATGTGCCTTTAATGCTT-----AGAAGAGCACTAAGCAGTCTTCA------------------AGGTCATCCCGTGCC---------AGGACCTACTTACTATGTTGATGGAGGA------AGCAAACAGGGGCAAGGAAAATATGGCTTTTGGAGATCAGATGGAGTTAAACTAGTTAAGGAGAGTGAG---GGAAGTAATCAAGAATTAGAAAAAAGAGCCATGCTACTAGCCCTTCAAG---AAGGACCCCCGATAATGAATATAGTTACGGATTCCCAATATGT------------------ATATACATTAATTGAGGCCAGACCCCTACCTGTA-AATATTGAAGAACCCTTGCTTAGAACCATACTAGAAGCTATAGAAAGTAAAGAAGAAATTTACATCCAATGGGTGCCTGGACATAAGGGA---ATCCCAGGCAATGAAAATATTGACAAATTAGTTTCACAAATAAATACAACTCAAATAAA------------CCTGGTAGTACAAGGTGGTCACATTAAGGAAAAAGAACCAGAACAG------ATTGGATACTCCATAAGTGCCCCAA---AAGATCTGGTACTTATGCCAAAGGTAATAGAGACCCTTAACCTACAAACACAAATTACCATAATCCCAGGACAGTGGGGGTGGATAACAGAAACATCAGAGATGACTGAGGCCAAAGTAAGGGTAGTTGGAGGTTTCATCAGCCCAGGAGA-TCAAAATCCTTTAAAGATAAGATTGGTCAACCTATCCCAAAAAATAGTATATGTAAAAACAGGACAACTAATAGCTCAGTTAATTTTAATGCCTGTCCTCCATGACAT---------------------------------------------------AAGTAAGGCACCAAACAT----------------------CTTTTTTCTAGAACATATTGAGACAGCCACG-GATGATCATGC-TAAATGGCATAGTGATGTGTCATACTTGAGACAACAATTCAGCTTACCAAAAATTGTAGCAGAACAAATAATAAAGAACTGCCCCAAGTGTGTGCATA------------AAGGAGGA------ACTACTCCTCATATTAGTAGATCAGGGCCA------------GGACTGTGGCAAATGGATGTGACCCACTATGAGGCC------------CGGCTAATTCTGGTAGCCATTGAGACATCTACTGGCCTTCTATGGGCTAAGCTAATTCCTAAGGAAACTGCTCAGGAA---ACAGTATGGGGAATATTAGAACTACAGAACC---TATTTCATATCCAAGCACTCCATACAGATAATGGCCCTAACTTCACAGCAGAAAGGGTCACGGGACTGTGCCAATATTTAAATATTGATCATACCACAGGCACACCCTATAATCCACAGTCGCAGGGAATGGTTGAGAGAGCTAATCAATCCTTAAAACAAGAAATGGATAAATTTGCTGATGTAGTTCAAACCATTGAAGCACGGCTACAATTG---------------GCTCTTATCGCCCTTAATCAAAAGAAAAGGGGAGGAATAGGGGGCTATACTCCTACTGAAAGATATATCCATCAGAGATGGCAAGAACTAGAGCAAACGCTCCAAC------TCCAGAAATTTAAAGAC---AAAAAACTCTTTTGCTTTTAT---------AGATTACCAAACAGTAA-----AGACTGGAAAGGGCCCACTACCATCCTTTGGAAAGGAGAAGGAG-CAGTAGTGATCGACAC---ACCTGAAAAGGGGATTATTAGCTTGCCCCAAAGACATGTTAGGATGGTTCCA------GCCCCAGGACCTCA--------------GGATTTGGGAATTTCC---------------------------------------------------------------------------------------AATTAG------------------ SIVagi_Agile_Mangabey --------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAGGGAATG--------------CTCCCTGGAAGCA----------GGGGAAACC----------GAGGAATTTTCCTT---------------------------------------------------TAACCTCC--------------GTGACACCCTCTGCTCCAGGGATGGA---------------------------------------------------------------------TCAGTACGACCCTGCGGAAGCCATGTTAAAGAGATACTTGGAGCAGGGGAAAA---------------AGCAGAAGC-----------AGCAAAAGAGGCAGGAGGAGAAAAGCCAGCAGGGG------------------------------------AGAGCATACGAAGAGGCATTGTCCTCC--CTCAA------------------TTCTCTCTTTGGAAACGACCAGTAACCTGGGTCACCATAGAGGGTCAAAAAGTAGAAGCCCTTTTAGACACAGGTGCTGATGATACAGTCATCA------GTGACATAGAATT----------A---GGAGATAATTGGAAGCCAAAAATTATAGGAGGAATAGGGGGATATATAAATGTA-AAACAGTATTATAATTGTAAAATAGAAAT---------------AGCAGGGAAAGTTACACATGCTCATGTATTAGTA---GGTCCAACAC------------------------CGGTAAATATAATTGGGAGAAATGTGTTACACAAATTAGGAGCTTCATTAAA------TTTTCCAA------TAAGTA---AAGCAGAAATAATTAAAGTAGAGTTAAAGGAAGGTCAGGATGGACCAAGAGTAAAGCAGT-GGCCCCTCAGTAAAGAAAAAATAGAAGCCTTAACAGAAATATGCAATGCAATGGAAAAGGAGGGAAAAATTAGTAGAATAGGACCAGAGAATCCATATAATACTCCAATATTTTGTATTAGAAAGAAAGATTCGACCAAATGGAGAAAGCTAGTAGATTTCAGAGAACTAAATAAGAGGACACAGGATTTCTTTGAGGTACAGCTGGGGATTCCACATCCAGGAGGATTGAAGAAATGCAAGCAGATTACTGTGCTGGACATAGGGGACGCATATTTTTCCTGCCCCCTCTATGAGCCCTTCAGAAAGTATACAGCTTTTACTATACCAGCAATAAATAATCAAGGGCCAGGTATCAGATATCAATACAATGTGCTTCCTCAGGGATGGAAGGGCTCCCCAGCCATATTTCAAACCACTGCTAACAAAATTTTAGAACCAGTCAGGAAACAAAATCCA---GATTTAGTCATCTATCAGTATATGGATGACCTGTTTGTAGGATCAGACAGAACAGAATTAGAACACAGTCAAATGATAAAGAAATTGAGGGAACATTTGCTCGCCTGGGGATTTGAGACACCAGAAAAGAAATTTCAAGA---------TAAACCACCATTTGAATGGATGGGGTATGTACTCCACCCAGACAAGTGGACAGTGCAGGAAATTAAGTTG------CCAGAAAA------GGAAGAATGGACAGTGAATGACATACAGAAGTTGGTAGGCAAATTGAACTGGGCAAGTCAGATCTATGCAGGAATCAAAAC---------TAAAGAATTGTGCAAATTAATTAGAGGAATAAAAAGATTAGATGATAAGGTAGAATTTACAAAAGAAGCAGAATTAGAGTATGAAGAAAATAAACTGCTATTAAAAGAAAAATTGCATGGGGTATATTATGACCCAGAAAAACCATTGATAGCAAAAGTACAGAAATTAGAAGGAGGACAGTGGTCATATCAGGTAGAACAAGGAGATGG---------AAAAC------CTCTAAAAACAGGAAAATATGCCAAGCAGAAGACAGCACATACCAATGAGATTAGAATGCTGGCAGGGTTAGTTCAGAAAATTTGTAAAGAAGCAATAGTTATTTGGGGAAAATTGCC-----------------TAAATTTGAATTGCCTG--------------TAGAAAGAGAGGTATGGGAACAATGGTGGGCTGATTATTGGCAAGTCT------CATGGATTCCAGAATGGGAATTTGTGAGCACGCCGCCTTTAAT--------TAGGCTGTGGTATAACCTAGT------------------AAAGGATCCCATACC------AGGAGAGGAGGTGTATTATGTGGATGGGGCAGCAAACAGAAATAGTAAATTAGGAAAAGCAGGATACATAACAGATAGAGGAAAAGAAAAAGTAAAAGAATTAGAAGATACCACCAATCAGAAGGCAGAATTAGAGGCTGTACTTTTAGCTTTAAAAG---ATTCAGGAAAAAGAGTAAATATAGTAACAGACTCTCAATATGT------------------GTTTGGCATATTAGCAGGAAGTCCAGAC-------ACTAGTGAGAGTCCCTTAGTACAGCAGATAATAGAGCAACTAATAGGGAAAGAAGAAGTGTACCTCTCCTGGGTACCGGCACATAAGGGC---ATAGGAGGAAATGAAGAGGTAGATAAATTAGT--------------------GAGCAGA-------------------------------------------------------------------------------------------------------------------GGAATTAGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGT----------------------ATTATTCCTTGATGGCATAGAAAAAGCACAA-GAAGAACATGA-TAAATATCATAGCAATTGGAGAGCTATGGCAGAAGATTTCAGAATACCTCAAGTAGTAGCTAAGGAAATAGTGGCCCAATGTCCTAAGTGCCAGGTGA------------AAGGGGAG------GCAGTCCATGGGCAAACAGATGCTAGTCCA------------GGGACATGGCAAATGGATTGTACTCATTTGGAAGGA------------AAGGTAATCATAGTGGCAGTCCATGTAGCCAGTGGATATATAGAAGCAGAAGTCATACCAGCAGAAACAGGAAAAGAG---ACAGCATACTTCCTGTTAAAATTAGCAGCAA---GATGGCCAGTGAAACACTTACATACAGATAATGGAGCTAATTTCACAAGTGCAGCAGTACAGGCAGTCTGTTGGTGGGCTCAGATAGAGCACACCTTTGGAGTACCCTACAATCCTCAAAGTCAGGGAGTGGTTGAAAGTATGAATCATCAATTGAAGACAATAATAGGGCAAATTAGAGACCAAGCAGAGAAATTAGAAACAGCAGTTCAAATG---------------GCAGTGCTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGAGAAAGAATAATAGACATAATAGCATCAGAGTTACAAACAAATAAATTACAAA---ATCAAATTTCAAAAATT---CAAAATTTTCGGGTTTATTTT---------AGAGAAGGCAGGGATCA-----GCAGTGGAAGGGACCGGCCACTCTCATCTGGAAAGGAGAAGGAG-CAGTGGTGATCCAG------GATGGACAGGATCTGAAGGTAGTCCCTAGAAGAAAGTGTAAAATTGTAAAA------GATTATGGCA------------------------GAAAAAATGT-----------GGATAGTGAGACCAATATGGAGGGTGGACAGGAGGAAAATTGA--------------------------------------------------------- SIVagmGri_African_Green_Monkey_Grivet -----------------------------------------------------------------------------------------------GTGCGGCAAAATTGGCCATATGGCAAAAGACTGCAAGAATGGACAGGCAAATTTTTTAGGGTATG--------------GCCATTGGGGAGG----------AGCGAAACC----------AAGAAATTTTGTGCAATACAGAG------------------------------------------GAGACACA--------GTTGGTCTGGAACCAACAGCCCCCCCAATGGAAA------------------------------------------------------------------CAGCTTACGATCCAGCAAAGAAGCTCCTCCAGCAGTATGCAGAGAAGGGACAGC---------------GCCTGAGAG--------------------AGGAGAGAGAACAGACAAGGAAACAG------------------------------------AAGGAGAAAGAAGTGGAGGATGTTTCC--TTGAG------------------CTCCCTCTTTGGAGGAGACCAATGAAACGAGTCATCATAGAAGGAACGCCAGTGCAAGCCTTGTTAGATACAGGAGCAGATGACACTATAATTCAAGAAAAGGACTTGCACTTTCCCCC----A---CATAAACCATGGCGTTCCAAGGTAGTAGGAGGTATAGGAGGAGGGATTCATGTC-AAAGAATATCAGGGGGTACAAGTACAATT---------------GGAGGATAAAATCATCACCGGCTCAATTCTAATA---GGAAGTACAC------------------------CAATCAATATTATAGGAAGAAATATTTTAGCTCAGGCAGGCATGAAATTAGT------TATGGGAGTTCTATCTAGTC---AGATTGAGGAAACAAAAGTACAACTAAAAGAAGGGAAAGATGGACCTAAATTGAAACAAT-GGCCCTTATCAAGAGAAAAAATTGAAGCTTTAACAGAAATATGCAAACAAATGGAAGAGGAGGGAAAATTATCTAGGATAGGAGGAGAAAATCCTTATAATACACCAGTGTTTGCCATAAAGAAAAAGGATAAAACACAATGGAGAATGCTTGTAGATTTCAGGGAACTAAACAAAGCTACTCAAGACTTTTTTGAGGTTCAGCTGGGAATTCCTCACCCAGCGGGCCTTCAGAAAAAGAAGCAAATCACAGTAATAGACATAGGGGATGCCTATTATTCAATACCATTATGCAAGGAATTCAGAAAATATACAGCATTTACCATCCCCTCAGTAAATAATACAGGGCCAGGGATAAGGTATCAGTTCAATTGTCTGCCTCAGGGATGGAAAGGATCTCCTACAATTTTCCAGAATACGGCAGCAAACATTTTAGAGGAGATCAAAAGGCACACTCCT---GGGTTAGAAATTGTCCAATACATGGACGATTTGTGGTTGGCGTCAGACCATGATGAGACTAGACATAATCAACAGGTAGACATAGTAAGAAAGATGCTGCTAGAAAAAGGTCTAGAAACCCCAGACAAGAAAGTCCAAAG---------AGAACCGCCATGGGAATGGATGGGGTATAAATTGCATCCGAATAAATGGACCATTAACAAAATAGAATTACCC---CCCTTAGA------AGGAGAATGGACAGTAAACAAAATACAGAAGGTAGTAGGAGTTCTAAATTGGGCAAGTCAAATTTATCCAGGAATTAAAAC---------CAAACATACCTGTGCCATGTTGAGAGGGAAAAAGAACCTCCTAGAAGAAATAGTATGGACAGAAGAGGCAGAGGCAGAATATAAGAACAATCAAGGGATAGTGCAGGAAACACAAGAAGGAACATACTATGACCCTCTCAAAGAATTAATAGCAACAGTTCAAAAGCAAGGAGAAGGGCAATGGACATACCAATTCACCCAAGAAGGGG------------CAG------TATTAAAGGTGGGAAGATATGCCAAGCAAAGAGAAACTCATACTAATGATCTAAGGACTCTAGCACACCTTGTCCAAAAAATCTGTAAGGAAGCACTTACCATTTGGGGAAGACTTCC-----------------ACGAGTACAACTCCCAG--------------TAGACAAGAAAACATGGGATATGTGGTGGCAGGACTATTGGCAAGTAT------CCTGGATACCAGAATGGGAGTTTGTTAGCACACCACTCCTAGT--------AAAACTGTGGTATTCCTTAGT------------------AAAAGAACCAATCAA------AGGAGAAGATGTTTATTATGTGGATGGGGCAGCATCCAAAGTGACCAAATTAGGTAAGGCAGGATATCTGTCAGAGAGAGGAAAAAGTAGAATTAGGGAATTAGAAAACACCACTAACCAACAAGCAGAATTAACAGCAGTTAAGATGGCATTGGAGG---ACAGTGGAGAAAATGTAAATATAGTCACAGATTCTCAATATGT------------------AATGAACATCTTGACAGCATGTCCACAG-------GAAAGTAACTCACCCTTAGTGGAACAGATAATACAAGCCCTAATGAAAAAGAGGCAGGTCTACTTACAATGGGTACCAGCTCATAAGGGG---ATAGGAGGCAATACAGAAATAGATAAATTAGT--------------------AAGCAAA-------------------------------------------------------------------------------------------------------------------GGAATAAGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAT----------------------CCTCTTCTTAGATAGAATAGAAGAAGCACAA-GATGACCATGC-AAAGTACCATAACAATTGGAGAAGTATGGTACAGGAATTTGGATTACCTAATATAGTAGCAAAAGAGATAGTAGCGGCATGTCCCAAATGCCAAATAA------------GAGGAGAA------CCTAAGCATGGACAGGTAGACGCCTCCATT------------GAAACTTGGCAGATGGACTGCACCCATTTAGAAGGA------------AAAGTTATAATAGTAGCAGTACATGTAGCCAGTGGATTCATAGAAGCAGAGGTGATCCCAAGAGAAACTGGGAAGGAG---ACAGCACACTTTCTGCTGAAACTGTTAGCAA---GATGGCCAGTGAAACATCTACACACTGATAATGGCCCAAACTTTACCTCTCAGAATGTGGCAGCGGTGTGCTGGTGGGGTAATATAGAGCACACCACTGGAATACCTTATAACCCACAGTCACAGGGTAGTGTAGAAAGCATGAACAGACAGCTCAAGGAAATCATCTCTCAAATAAGAGATGATTGTGAGAGATTGGAGACAGCAGTGCAAATG---------------GCTACGCATATCCACAATTTTAAAAGAAAGGGAGGAATAGGGGGTATCTCTAGTGCAGAAAGATTGGTTAATATGCTAACAACACAACTAGAACTAAATACTCTACAAA---ACCAAATCCAAAAAATT---TTGAATTTTAAGGTCTACTAC---------AGAGAAGGTAGAGATCC-----AGTGTGGAAAGGACCAGCGCGACTCATCTGGAAAGGAGAAGGCG-CGGTGGTAATTAAA------GAGGGGGAAGACATCAAGGTAGTCCCCAGGAGAAAGGCTAAGATTATCAAA------GATTATGGAG---------------------AGAGAAAAACAAT-----------GGATAGTGAGGGTAGTATGGAGGGTGTCAGAGAGGCAAATAAGCAGATGGAGGGGGATAGTGACTTACAAGATCAGGAATAA------------------ SIVagmSab_Afican_Green_Monkey_Sabaeus --------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAGGGTTTG--------------GCCCCTGGGGCAG----------AGGGAAACC----------CAGGAATTTCCCTC---------------------------------------------------TGACCTCC--------------ATCAGACCAACAGCTCCCCCAATGGAACGGGATTACAGCAGGCCGGAGGAAAATTGGTATGCAGACAGACCTCCGACCAG------AGGACCAGGGCCAGACGATCCAGCAACAGCCCTGTTAAAGCAGTATGCTGTTCAGGGGAAAC---------------GGCAGAAAC-----------------AGCAGTGGCAAAACCACTCGCCACAACAG------------------------------------AGCCCCTACGAGGAGGCTTACAGCTCC--CTCAG------------------GTCTCTCTTTGGAGAAGACCAATGAAAACTGTGTACATAGAGGGACAGAAAGTCACTGCTCTATTAGACACAGGAGCAGATGACTCAGTAATAC------AGGGTATAGAATT----------A---GGAGACAATTGGAAACCAAGAATAATTGGAGGAATAGGAGGATGTATTAATGTA-AAAGCATACCACAATCAGGAGGTAAAAAT---------------AGAAGATAAAACTTGTAAAGCTACCATTTTGGTA---GGAGAAACAC------------------------CAGTTAATATTATAGGAAGAAATGTCTTAGCACAATTAGGAGTTACTCTAAA------TTTGACAC------AAAGAG---AGATAGAACCTATAAAAGTCCACTTAAAGCCAGGACAAGATGGGCCAAGGATAAGGCAAT-GGCCTTTGTCAAAAGAAAAAATAGAGGCCTTAAAGGCCATTTGTGAAGACTTAGAAAAACAAGGACATTTGGAAAGAATAGGGCCAGAAAATCCATATAACACCCCAGTCTTTGCAATAAGGAAGAAAGATAAAACTCAGTGGAGAATACTCATGGACTTCAGGCAGTTAAATAAAAGTACTCAAGACTTTCAGGAAGTCCAGTTAGGGATACCCCACCCAGCAGGCTTACAGCAAAGGGAGCAGATTACAGTGTTGGACATAGGAGATGCCTATTTTAGCTGCCCTTTAGATCCAGACTTTCAGAAATATACAGCATTCACCATCCCATCAGTCAATAATAGGGAGCCAGGCATAAGATATCAGTATAAGGTGCTCCCACAGGGGTGGAAAGGCTCACCCACAATTTTTCAGACAACAGCCAACAAAATTCTGCAGGAATTTAGGCAAAAGAACCCA---GATGTAGATATATATCAATACATGGATGATATGTTAATAGCCAGTGATAGGCCAAAGGCAGAACATCTAGTAATGGTACAGCAGTTAAGAGACTATCTAGAAACTTGGGGGTTTAAAACCCCTGAAAAGAAGTTTCAAAA---------GGATCCACCATACCTCTGGATGGGGTATGAATTGTATCCAAAGAAATGGCAACTGCAGGAGATCACCCTA------CCAGAAAG------GGAAGAATGGACAGTGAATGATATTCAAAAATTAGTAGGAAAGTTAAATTGGGCAAGTCAAATTTACACAGGGATAAAGAC---------TAAACATTTGTGTAGACTAATTAGAGGAGCTAGACCTTTGACAGAGATAGTCCAATGGACAGAAGAGGCAGAACTAGAATTAGAAGAAAATAGACAGATCTTAAGACAAAAGCAGCAGGGACAATATTATGACCCTGCTCTTCCTTTAAGGGCTAAGGTTCTTAAACTGGGAGATGGCCAATGGGGATATCAGATATACCAGCCAGAAAA---------TAAAA------TACTGAAGGTTGGCAAATATGCAAAAATCAAAACAGCACACACCAATGAATTAAGAATGTTAGCAGGCCTAGTACAGAAGATAGGAAAGGAAAGCATAGTCATCTGGGGACAGATACC-----------------TATTATGGAACTGCCAG--------------TAGAAAGAGAGCTCTGGGAACAATGGTGGTCTGACTATTGGCAGGTCA------CCTGGATCCCGGAATGGGAAATGGTCAGTACTCCTCAATTGAT--------TAGATTGTGGTACAAATTAGT------------------AAAAGATCCCATCCC------AGGAGAAGCAGTCTATTATGTAGATGGGGCAGCTAATAGAAATTCCAAAGAAGGAAAAGCAGGATACTTAACAGATAGAGGGGATCAAAAGGTGGTAGCATTAGAGAATACTACCAACCAGAAAGCAGAGTTAGAGGCCATTCTGTTAGCCTTAAGAG---ACTCTGGAAGCAAAGTAAATATAATAACAGACTCACAATATGC------------------TATGGGTATTATAGCAGGGGAACCTACA-------GAATCAGATAATAACATAGTACAACAAATTATAGAGGAACTAATAAAGAAGGAGGCAGTGTATATAGCATGGGTACCTGCCCATAAAGGA---GTAGGTGGCAATGAGGAAATTGATAAACTAGT--------------------TAGTCAA-------------------------------------------------------------------------------------------------------------------GGAATAAGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGT----------------------ACTATTCCTGGACAGAATTGAAGAAGCACAA-GAAGAGCATGA-TAAATACCATGCCAATTGGAGGAGTATGCAACAAGAATTTGGCTTACCTGCTATAGTAGCAAAAGAAATAGTAGCGGCATGTCCTAAATGCCAGATAA------------AAGGGGAG------TCTGTACATGGGCAAGTAGATGCTAGTCCA------------GGAGTGTGGCAAATGGATTGTACACACCTAGAAGGA------------AAAATCATCATAGTGGCTGTTCATGTTGCTAGTGGATTTATAGAAGCAGAAGTAATCCCACAGGAAACAGGAAAAGCT---ACAGCACACTTCCTGCTGAAGTTAGCCAGCA---GATGGCCCATCACACAGCTGCATACAGATAATGGTACCAACTTTACTAGCCAGCAAGTAGCAGCTATTTGCTGGTGGGGAAAAATAGAGCACACATTTGGGGTACCCTACAACCCCCAAAGTCAGGGAGTAGTAGAATCTATGAATAAGCAGTTAAAAGAAATCATAGGACAAATTAGAGATGATGCAGAAAGATTGGAAACAGCAGTCATAATG---------------GCAGTGCACATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACTCTGCAGCAGAAAGACTAATCAATATAATACATACAGAACTAGAAACCAAAACACTTCAAC---AAAAAATTTCAAAAATT---CAAAATTTTCGGGTCTATTAC---------AGGGAAGGCAGAGACCC-----TGTGTGGAAAGGTCCGGCTAAGCTCATCTGGAAAGGAGAAGGAG-CAGTAGTTATACAA------GAACAGGGTGAATTGAAAACAATCCCAAGAAGAAAAGCCAAAATTATAAAA------GATTATG---------------------------GAAAAGCATT-----------GGATAGTCAGGCCCCTCTGGAAGGTAACGGGCGGACAGCAGGAGAGGTGGAC---------------------------TAG------------------ SIVagmTan_African_Green_Monkey_Tantalus GGCAGAGGCAGAGGCCCACCCCGCTGCTTCAAATGTGGACAAATTGGGCATATACAAAAAGATTGTCCAAGAGCAGGACCAAACAAATGCCTAAAATGTGGGAAGCCAGGACACTTAGCAAAAGATTGCCGCAGTGGACAGGCCAATTTTTTAGGGAGAAT-----------GCCAACCTGGGG-------------AACAAAGCC----------GCGCAATTTTTTAGAGCAA--------------------------------------------------------------GGCGGAGCCGTTCCGACGGCTCCCCCGATGCCTGCGCACGGA---------------------------------TTCCCCACAGGTTCGCCAGCTGCGGGAGCATACGACCCAGCCAGGAAACTGCTGGAGCAGTATGCCAAAAAGGGAGATC---------------AATTGAGAA-----------------------------------------AGCAG------------------------------------AAGGAGAAGGAACTGGAGGACTATTCC--TTGAG------------------TTCCCTCTTTGGAGGAGACCAATGAGTAAGATCTACATACAGGGCCAGCCAGTACAAGTTCTGTTAGATACAGGAGCTGATGATACCATAATAAAGGAAGAAGATATCCATTT----------A---GAAGGACGCTGGCGGCCTAAAGTAGTAGGAGGTATAGGAGGGGGAATCTCAGTA-AAACAATATGACAATATTTTAGTGAATAT---------------AGATGGAAAAGAAACTAGAGGTAATGTACTAATT---GGACCAACAC------------------------CAATAAATATTGTAGGAAGAAATATTCTAGCACCTTTAGGAGCAAGATTAAT------AATGGGACAGCTAAATGAGA---AAATACCCATAACCAAGGTACAATTGAAACCTGGGATGTCAGGACCGAAATTAAAACAAT-GGCCCCTATCAGAAGAAAAAATAAAAGCCCTGACAGAAATAACTCAGGCTCTAGAAAAGGAAGGAAAAATTTCTAAGGTTGGAGGAGAGAATCCTTACAATACTCCCGTGTTTTGTATCCGGAAAAAAGACAAAACACAGTGGAGGATGTTAATAGATTTTAGAGCTCTCAATAAAGCAACACAGGACTTCTTTGAGGTACAATTAGGTATTCCCCATCCAGCAGGATTGAAAAGAAAGAAACAGATCACAGTACTAGATATAGGAGATGCCTATTATAGTATACCATTGGATCCAGAATTCAGGCCCTATACAGCTTTTACCATCCCACAAGTAAATAATGTAGGGCCTGGAATTAGGTATCAATTCAATTGTCTACCTCAAGGATGGAAAGGATCACCCACCATATTTCAGCACACAGCACAGCGAGTCCTAAAAGAAATAGGAAAAAAGGTTCAA---GATTTAGAAATAATTCAGTACATGGATGACATGTGGATAGGATCAGATTTGCCAGAGAAAGAACATGATGAAAAGGTAGAAGAGGTAAGAAAGCTTCTGCTATTAAGAGGCTTCGAGACGCCAGATAAGAAGGTGCAGAA---------AAGACCTCCATATGATTGGATGGGATACAAGTTGTACCCTTCTCACTGGAGTCTCAACAAAATAGAGATA------CCAGAGCA------AGAACACTGGACAGTGAATGATATTCAAAAATTAGTAGGAGTGTTAAATTGGGCTAGTCAATTATATCCAGGAATTAAGAC---------AAAAGCCCTATGCAAATTACTACGAGGAGCTCAAGATTTAACAGCTGTAGTGCAATGGACGGAGCAGGCAGAGGTAGAGTTCAGACAAAATCAAGAGATCTTAAAAGAAGAGCAACAGGGAGCTTACTATGACCCAAGTAAATCTTTGAGAGCCACTATTACCAAGCTGGATGATGGGCAATGGGGATATCAATTCAAACAGGAGGGAA------------AAG------TACTAAAAACAGGAAAATATACAAAGAGCAAAAATACTCATACAAATGAGTTTAGAGTATTGGCAGGAATGGTCCAAAGGGTGTGCAAGGAAGCGATCACCTTTTGGGGAAAATTACC-----------------CATCATGGAAGTACCAG--------------TAGAAAGAGAAGTATGGGAACAATGGTGGAGTGACTATTGGCAAGTCA------CATGGCTACCAGAGATAGAATTCATCTCCACACCGCCCTTAAT--------CAAATTATGGTATAACTTGGT------------------AAAAGATCCCATACC------AAAAGCAAAGGTGTATTATTGCGATGGGGCATGCAATAGAAATTCCAAATTAGGAAAGGCAGGCTTCCTAACTAACACAGGAGAATCACAGGTCATAGAATTAGAGGATACCACGAACCAACAAGCAGAATTACAAGCAGTCCTTCTAGCATTAAAAC---ATAGTAAGAGCAAAGTTAATATAGTAACGGATTCACAGTATGT------------------CATGGGAATCCTGACAGCACAACCTACA-------CAAAGTGACTCCGTGCTAGTAAATCAAATAATTGAAGAAATGATTAATAAAGATGCTATCTATTTAACCTGGGTACCAGCACATAAAGGG---ATAGGGGGAAATCAAGAAATAGATAAGCTAGT--------------------AAGCCAG-------------------------------------------------------------------------------------------------------------------GGGATTAGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGT----------------------GCTATTCTTAGACAGAATGGAAGAAGCCCAG-GAATCACATGA-TAAATATCATACTAATTGGCAATTTATAAGAGATGCATTCGGTATACCAGCACTGGTAGCAAAAGAAATAGTAGCTGCTTGCCCAAAATGTCAAATTC------------GAGGAGAA------CCGATACATGGGCAAGTAGATGCCAGTGTA------------GGGGTCTGGCAAATGGACTGTACACATTTGGAAGGA------------AAAATCATTATAGTAGCAGTCCATGTGGCCAGTGGCTTCTTAGAAGCAGAAGTCATAGCTAGGGAAACAGGAAAAGAA---ACAGCAAAATTCCTGTTAAAAATCATTAGTA---GGTGGCCTATTACAAAATTACATACTGACAATGGGCCAAATTTTGTTAGTCAGGAGGTACAAACTATTTGTTGGTGGGGACAAGTAGAGCACACAACAGGGATCCCCTATAACCCACAATCACAAGGAAGTGTAGAAAGTATGAATAGACAATTAAAAGAAACTATAGAAAAAATTAGAGAAGACTGTGCATTTTTGGAAACGGCAGTCCTCATG---------------GCCTGCCACATTCACAATTTTAAAAGAAAGGGAGGAATAGGGGGTATGACCCCAGCAGAGAGGCTAATAAACATGATAACCACACAACTAGAAATACAACACATACAAA---CACAACAACAAAAAATT---TCAAATTTTAAGGTCTACTAC---------AGAGAAGGAAGAGAGCC-----AGTGTGGAAAGGACCAGCCACTCTCCTCTGGAAGGGAGAAGGAG-CGGTAGTCATAAAA------GAAGGTGAGGAGTTGAAAGTAGTACCAAGGAGAAAGGCAAAAATTATCAAA------GAATATGGAG---------------------AGAGAAAAACTGT-----------GGGTGACAAGACTAACATGGAGGGT------------------------------------------------------TAG------------------ SIVagmVer_White_Crowned_Mangabey --------------------------------TTGTGGAAAATTTGGCCATATGCAAAGACAATGTCCGGAACCAAGGAAAACAAAATGTCTAAAGTGTGGAAAATTGGGACACCTAGCAAAAGACTGC---AGGGGACAGGTGAATTTTTTAGGGTATG--------------GACGGTGGATGGG----------GGCAAAACC----------GAGAAATTTTCCCG---------------------------------------------------CCGCTACT--------CTTGGAGCGGAACCGAGTGCGCCTCCTCCACCGAGCGGCA---------------------------------------------------------CCACCCCATACGACCCAGCAAAGAAGCTCCTGCAGCAATATGCAGAGAAAGGGAAAC---------------AACTGAGGG--------------------AGCAAAAGAGGAATCCACCGGCAATG------------------------------------AATCCGGATTGGACCGAGGGATATTCT--TTGAA------------------CTCCCTCTTTGGAGAAGACCAATAAAGACAGTGTATATAGAAGGGGTCCCCATTAAGGCACTGCTAGACACAGGGGCAGATGACACCATAATTAAAGAAAATGATTTACAATT----------A---TCAGGTCCATGGAGACCCAAAATTATAGGGGGCATAGGAGGAGGCCTTAATGTA-AAAGAATATAACGACAGGGAAGTAAAAAT---------------AGAAGATAAAATTTTGAGAGGAACAATATTGTTA---GGAGCAACTC------------------------CCATTAATATAATAGGTAGAAATTTGCTGGCCCCGGCAGTGCCCCGGTTAGT------AATGGGACAATTATCAGAAA---AAATTCCTGTCACACCTGTCAAATTGAAGGAAGGGGCTCGGGGACCCTGTGTAAGACAAT-GGCCTCTCTCTAAAGAGAAGATTGAAGCTTTACAGGAAATATGTTCCCAATTAGAGCAGGAAGGAAAAATCAGTAGAGTAGGAGGAGAAAATGCATACAATACCCCAATATTTTGCATAAAGAAGAAGGACAAATCCCAGTGGAGGATGCTAGTAGACTTTAGAGAGTTAAATAAGGCAACCCAAGATTTCTTTGAAGTGCAATTAGGGATACCCCACCCAGCAGGATTAAGAAAGATGAGACAGATAACAGTTTTAGATGTAGGAGACGCCTATTATTCCATACCATTGGATCCAAATTTTAGGAAATATACTGCTTTTACTATTCCTACAGTGAATAATCAGGGACCCGGGATTAGGTATCAATTCAACTGTCTCCCGCAAGGGTGGAAAGGATCTCCTACAATCTTCCAAAATACAGCAGCATCCATTTTGGAGGAGATAAAAAGAAACTTGCCA---GCACTAACCATTGTACAATACATGGATGATTTATGGGTAGGTTCTCAAGAAAATGAACACACCCATGACAAATTAGTAGAACAGTTAAGAACAAAATTACAAGCCTGGGGCTTAGAAACCCCAGAAAAGAAGATGCAAAA---------AGAACCACCTTATGAGTGGATGGGATACAAACTTTGGCCTCACAAATGGGAACTAAGCAGAATACAACTG------GAGGAAAA------AGATGAATGGACTGTCAATGACATCCAGAAGTTAGTTGGGAAACTAAATTGGGCAGCACAATTGTATCCAGGTCTTAAGAC---------AAGAATATGCAAGTTAATTACAGGAGGAAAGAAAAATCTGTTAGAGCTAGTAGCTTGGACACCTGAGGCAGAAGCTGAATATGCAGAAAATGCAGAGATTCTTAAAACAGAACAGGAAGGAACCTATTACAAACCAGGAATACCTATTAGGGCAGCAGTACAGAAATTGGAAGGAGGACAGTGGAGTTACCAATTCAAACAAGAAGGAC------------AAG------TCTTGAAAGTAGGAAAATACACCAAGCAAAAGAACACCCATACAAATGAACTTCGCACATTAGCTGGTTTAGTGCAGAAGATTTGCAAAGAAGCTCTAGTTATTTGGGGGATATTACC-----------------AGTTCTAGAACTCCCGA--------------TAGAAAGAGAGGTATGGGAGCAATGGTGGGCGGATTACTGGCAGGTAA------GCTGGATTCCCGAATGGGATTTTGTCAGCACCCCACCTTTGCT--------CAAACTATGGTACACATTAAC------------------AAAAGAACCCATACC------CAAGGAGGACGTTTACTATGTA---GGAGCATGCAACAGAAATTCAAAAGAAGGAAAAGCAGGATACATCTCACAATACGGAAAACAGAGAGTAGAAACATTAGAAAACACTACCAATCAGCAAGCAAAATTAACAGCTATAAAAATGGCTTTGGAAG---ACAGTGGGCCTAATGTGAACATAGTAACAGACTCTCAATATGC------------------AATGGGAATTTTGACAGCACAACCCACA-------CAAAGTGATTCACCATTAGTAGAGCAAATTATAGCCTTAATGATACAAAAGCAACAAATATATTTGCAGTGGGTACCAGCACATAAAGGA---ATAGGAGGAAATGAGGAGATAGATAAATTAGT--------------------GAGTAAA-------------------------------------------------------------------------------------------------------------------GGCATTAGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGT----------------------TTTATTCTTAGAAAAAATAGAAGAAGCTCAA-GAAAAGCATGA-AAGATATCATAATAATTGGAAAAACCTAGCAGATACATATGGGCTTCCACAAATAGTAGCAAAAGAGATAGTGGCCATGTGTCCAAAATGTCAAATAA------------AGGGAGAA------CCAGTGCATGGACAAGTGGATGCCTCACCT------------GGAACATGGCAGATGGATTGTACTCATCTAGAAAAA------------AAAGTAGTCATAGTTGCGGTCCATGTAGCCAGTGGATTCATAGAAGCAGAAGTCATACCTAGGGAAACAGGAAAAGAA---ACGGCAAAGTTTCTATTAAAAATACTGAGTA---GATGGCCTATAACACAGTTACACACAGACAATGGGCCTAACTTTACCTCCCAAGAAGTGGCAGCAATATGTTGGTGGGGAAAAATTGAACATACAACAGGTATACCATATAACCCCCAATCTCAAGGATCAATAGAAAGCATGAACAAGCAATTAAAAGAGATAATTGGGAAAATAAGAGATGATTGCCAATATACAGAGGCAGCAGTACTGATG---------------GCTTGCATACTTCACAATTTTAAAAGAAAGGGAGGAATAGGGGGACAGACTTCAGCAGAGAGACTAATTAATATAATAACAACACAATTAGAAATACAACATTTACAAA---CCAAAATTCAAAAAATT---TTAAATTTTAGAGTCTACTAC---------AGAGAAGGGAGAGACCC-----TGTGTGGAAAGGACCGGCACAATTAATCTGGAAAGGGGAAGGAG-CAGTGGTCCTCAAG------GACGGAAGTGACCTAAAGGTTGTACCAAGAAGGAAAGCTAAAATTATTAAG------GATTATGAAC---------------------CCAAACAAAGAGT-----------GGGTAATGAGGGTGACGTGGAAGGTACCAGGGGATCTGATAAC------------------------------------TAA------------------ SIVasc_Red_Tailed_Monkey --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGTACTGCGACAGATGGAGCATGTGTCCATAGTGGACATGAAGGATGCCTTTTACAGCGTCCCTCTAGACCCAGCATTTGCTCCGTATACTGCATTTACCGTCCCATCGGTGAATAATGCTTCCCCAGGAGAGCGCTATCAGTTCAGAGTCTTGCCGCAGGGATGGAAGGGGTCTCCTACCATCTTCCAGCACACAGCAGCAGGGATCTTAGAGCCGCTGAGGGCCCAGTACTCA---GATATGACCATCATACAGTATATGGACGACCTCTTAATAGGCTCTAACAGGCCTATTGAAAGTCATCGCAAGGCGGTGCAGGCAATAAGGCAGACTCTGACCTCACAAGGGATAGCAACCCCGCTGGAAAAATATCAGGA---------GGACTTCCCAGTAACATGGTTAGGGTATGAGTTGCACCCAAAAAGCTGGACCATATCAAAAATAGAACTT------CCTAATCA------GCAGGAGTGGACAGTTAATGATCTCCAAAAGTTAATAGGGAAGTTAAATTGGGCAAGCCAAATATATCCAGGGATTAAGAC---------CAAGCAGTTGTGCAAACTCCTCAGGGGAGCCAAGGGACTCTTGGACAAAGTAGAGCTCAGCGAGGACGCAGAAGCCGAGCTGAGGGAAAATCAGGAGATTCTGTCTCAAGAACACACAGGGGGATATTACAGAGAGGACCTCCCCCTAGAGGTAGAAGTGGTGTCCCTAGGGGATACACAATGGGGATACATGTTCAAACAGGACAAAC------------AGG------TCCTCAAAACAGGGAAGTTTGCTAAGGTAAGATCAGTGCATGTCAACCAATATGGACAGCTGGCAGATGCTCTAACCAGGCTAGGCAGAGAAAGTCTGGTCTATTGGGGTCGCTTGCC-----------------GGAGTTCCGCATCCCAG--------------TGGTGCAGGAGCAGTGGAACACCTGGTGGGCGGAACACTGGCAGGCTA------ATTGGATCCCAGAGGTCAAGGCGGTACACACCCCGCCCTTGTT--------GAGAAGCTGGTTCACCTTGGC------------------AACAG---CTCCCTT------GGATGCTCCGACCTTTTACACCGACGGGGCAGCCAACAGAGAATCCAAATTAGGGAAGGCAGGCTATGTGACAAACACAGGGAAAAGAGCCTGCATAGGGTTAGAAAACACTACTAACCAGAAAGCAGAATTGGAGGCAGTCAAATTGGCCTTAAAAG---AAGGGCCAAGAAAAATGAACCTGGTAACGGACTCTCAATACGT------------------GCTGAACATCTTCGCGGGGGCACCGGAG-------GTGTCCGACCACCCCCTGGTGGAGGACATCATCCAGTTGCTCCTGGGAAAGGAGTCCGTTTACCTCACTTGGGTACCAGCCCATAAAGGC---ATTGGAGGCAATGAAGAGGTAGATAAATTAGT--------------------AAGTAGT-------------------------------------------------------------------------------------------------------------------GGTATAAGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGT----------------------GTTGTTCCTGGACGGTATCAACCAAGCCCAG-GAGGAACATGA-AAGATACCACACAAATTGGAAGTATCTTAGAGACACCTTCCAAATACCCACCTTGGTAGCCAAGGAAATAATTAATCATTGCCCAAAATGTCAGAGCC------------AAGGAGAG------CCCAAAACAGGGCAGGTCAATGCGTCACTT------------GGATTATGGCAGATGGATTGCACGCATTTGGAAGGA------------AAGGTAGTCCTAACAGCCGTCCATGTGGCAAGTGGTTATGTATGGGCCAGGATAATTCCCAATGAAACGGGAAGAATC---ACAGCACTGGAGCTGCTAAACTTGTGTGCTA---CATGGCCAGTCCACCACATCCATACAGATAATGGACCAAATTTTATTAGCCAGGAATTTGCAGCAGCAGTGTGGTGGGCAAACATAGAGCACACAACAGGGGTACCATACAACCCCCAAAGTCAGGGAGTAATAGAAAATGTCAACAAGCAGTTGAAGAAAACAATTGCCAAAGTCAGAGATGAAGTGCAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SIVbkm_Black_Mangabey --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAGAAAAGAGAAAAAACGTGTCCATTGTGGATATGAAAGATGCTTACTATTCAGTGCCATTGGACCCCAGCTTTAGTCCATACACAGCGTTTACCATACCATCGGTAAACAATGAACAACCAGGGGTCAGATACGTATTCAAGGTGTTACCACAGGGATGGAAAGGATCTCCTACCATCTTTCAGAATACAGCAGCACAAATATTGAAGAAAGTAAGGGAAAAATATCAA---GATGTCACAATAATTCAGTATATGGATGAGTTGTTAATAGGATCAGATAGGACAAATGATGAGCATTATAAAATAGTGACAGAAATTAGGCAAGATTTAATGGGATATGGGATAGCAACCCCCCAGGAAAAATATCAGAG---------GGGGCATCCAGTAGAATGGTTAGGATATACCCTACACCCAACTACATGGACAATCAATCCAATAGAACTC------CCTGAAGA------CACAGAGATGACAGTAAATGAGCTACAAAAGTTAATAGGAAAATTAAATTGGGCAAGTCAAGTTTATCAGGGAATTAAAAC---------CAAACACTTAGCAAAATGCCTGAGGGGAACAGGGTCTCTTGTGGAAATGGTAACGCTGTCAAAAGAGGCAGAAGCAGAACTAGCTATTAATAAGGAAGTGCTTGCTAAAAAGGCTGAAGGAACATACTATGATAACAGTAAACCTTTAATAGCAGAGATAACCAATCTAGGCAAACAACAATGGGGATACATAGTTAGACAGGAGGAAA------------AAGGAATCCCTTTAAAGACAGGCAAATTTGCAAAGGTAAGATCAGTACATACCAATGAATATGATCAATTAGTCCAGGCCATGGCCAAGATAGGAAGGGAAGCCATAACAGTATGGGGAAGACTGCC-----------------AAAATTTAGGATACCAG--------------TAGTAAAGGAACAATGGGATGCATGGTGGCATGAGCACTGGCAGGAAA------GCTGGATTCCAGACATAGAAGCAGTACATACTCCTCATTTACT--------AAGATCATGGTTTACATTAGT------------------GTCAGAACCTATACC------AGACGCAGCCACGTATTATGTGGACGGGGCGGCTAATAAAAACAGCAAATTAGGAAAAGCAGGATATGTCACTGACACAGGGTACTCAAAGGTGGTACACTTAGAAGGGACCACTAATCAAAAGGCAGAATTAGAGGCAATAAAATTGGCCTTACAAG---ATTCAGGATCAAAAGTTAACATAGTAACAGATAGCCAATATGT------------------CTTGGGGATCATCTCAGCACAACCCACA-------AGCTCAGACCATCCAATAGTAGAGGACATTATACAGTTACTATTAGGAAAAGACCAGGTATACATTACATGGGTACCAGGACACAAAGGT---ATAGGGGGAAATGTAGAAGTAGACAGGCTGGT--------------------CAGTAAG-------------------------------------------------------------------------------------------------------------------GACATCAGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAT----------------------CCTCCTTTTAGAGGGGGTTACCCCAGCGCAA-GAGGACCACGA-AAAATACCACAGCAATTGGAAATACCTTAGAGAAAAGTTTCATATCCCAGCTCTGATAGCAAAGGAAATAATCAATCAGTGTCCCGGATGTCAGCAAA------------AAGGGGAA------CCAATGCATGGGCAGGTAAACACGGAAATA------------GGCACGTGGCAAATGGATTGTACTCATATGGAAGGA------------AAAGTAGTCATAGTAGCAGTGAATACAGCCAGTGGGTATATGGAAGCACAGGTACTGCCAGATGAAAAAGGAAAAAGC---ACAGCATTATTCCTGTTGCAACTTTGTGCCA---GATGGCCTATAACACATATACATACTGACAATGGGCCAAATTTTATCAGTCAAGAATATGCAGCAGCCGTATGGTGGACAGGGATAGAACACACCACAGGAGTACCATATAATCCACAAAGTCAAGGCATAGTAGAAAACATGAACAAGCAGTTAAAGAGTACCATAAAGAAGATAAGAGATGAAGTTCAGTACTTAGAGACAGCAGTGGCACAA---------------GCATGCTTCATTTTGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SIVblc_Black_Colobus -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT---ATAGGAGGAAATGAGAAAATTGACAAACTAGT----------------------------------------------------------------------------------------------------------------------A-----------------------GGTATGAGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGT----------------------AATGTGGTTAGGGCAAGTAGAAAAAGCGAAG-GAAGATCATGA-GAGGTTCCATAGCAATGTACCATATATGGAACAAGAATTTGGCCTTCCCAAAATAGTAGCAAAAGAAATTTGGGAAAGTTGTGACAAATGTCAGATAA------------AAGGACAG------CCTATTCATGGATCAGTAGATTACACCTAT------------GGGCTTTGGCAAATAGATTGCACACATGTTGAGGGA------------CAAGTTATTCTGGTAGCATGTCATGTGTGTACAGGATTTACTTGGGCCAAGATACTACCTAGAGAAACAGGAAAAGAA---ACTGGGAAAGCAATATTAGATTTGGCAACTA---TGTGGGAGGTAAAACAAGTCCATTCAGACAATGGACCAAATTTTACAAGCCAAGATTTCAAAGTATTTTTGTGGTGGGCAAACATTAAACATACAACAGGAATTCCCTATAATCCACAATCACAAGGTGTGGTAGAGCAAAGAAATAAGGTAATAAAAGAGAACCTGGAAAAACTAAAAGATCAAGCTGAAAGTCTTCAAACCAGACTCGCCATG---------------ACCATCTACATGCTTAATTTTAAAAGAAAGGGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SIVcol_Mantled_Guereza --------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAGGGGCAACCAGG------------------------------GGGGTGGAGCTAC-----AGACAGCCATCTTCCCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGAAGA--------------------TGAGCAAAGACCTGCCACCCAGGAGG------------------------------------GAGAAGGGGGAGAGTCTCTATCCCTCC--TTGAA------------------GTCTCTCTTCGGAGACGACCAATAGTTATAGTAGAAGTAGAAGGACAAAAGTGCCAAGCGCTGTTAGATACAGGAGCAGATGATACAGTTTTTAAAGAAGAAGATGTTCAATT----------A---ACAGGCGCTTGGACAGCAGTACAAATTCAGGGAATAGGGGGAGCAATCAGAGTA-AAACAGTATAGAGATAAAATTCTAAAGAT---------------GGGAGGAAAAGAATACAGAGGAGATATCTTAATA---GGACACACCC------------------------CCATAAATATAGTAGGTAGAAATATGTTAAA------AGAAGGGAAATTAGT------AGTAGCTCAATTATCAGATA---GGATCCCAGTCACCAAGGTGACGTTAAAAGAGGGCATGGATGGGCCAAAAGTAAAGCAGT-GGCCCTTAAGCAAAGAAAAAATAGAAGGTTTACAAAAGATATGTGAAAGATTGGAAGCAGAGGGAAAAATAGAAAAAGCAGAATTAGGGAATCCATATAATACACCAATATTTTGCATTAGGAAAAAAGATAAAAATGAATGGAGGAAATTAATAGATTTCAGGGAGCTAAACAAGAGAACACAAGACTTCATGGAAGTCCAATTAGGGATACCACACCCAGGAGGTCTTATAGAAAAGACCCATATAACAGTATTAGATATAGGAGATGCCTATTTCTCAATTCCCTTGGATCCGGATTATCAAAAGTACACAGCTTTTACAATCCCATCAGTGAACAATTTGGCACCAGGGACTAGATATGTGTACAAAGTGCTACCGCAGGGTTGGAAAGGGTCTCCAACAATCTTCCAAGGAACAGTAGCAAGAATCCTAGAACCGTTCAGGAAGAGAGG------ACAATTGCAAATAGCTCAGTACATGGATGATTTATATCTAGGATCAGATCTGCCTTTAGAGGAGCATAGAAGGGCAGTACAGGAGCTCAGAGATGCACTCTTGTACTATGGGTTAGAGACACCAGAAAAGAAATACCAGGC---------AGATCCTCCATACAAGTGGATGGGCTATGAATTACATCCTAAGCAATGGAAATTACAAAAGGTCAAAATT------CCAGAACA------GGATAAGTGGACAGTAAATGATATACAAAAATTGGTAGGAGCCTTAAATTGGTTAAGCCAATTATACCCAGGAATCAGGAC---------AAAGGAGATAAGTAAATGCACTAAAGGTAAGAAGCATTTGTTGGAGGAAGTGCAGCTTAGTGCAGAAGCAGAAGAGGAGCTACAAGATAACAAACAGATAATCAAAGAAGAAGTTCAGGGAGTGTACTATATACCACATGAGGACATTTGGGTAGACATTTTCAGGTTAGGGAAAGGACAATGGGGCTATGCAGTCTGCCAAAAACATG------------GAA------CGCTAAGAAGAGGAAAACATAACACAGGCAAAAATCAGCACTTTAATAGTATGCAGGAGTTAGCTTCAGTTATACAAAAGATAGGTAGGGAAGCCATAGTCACCTGGGGAAAGGTGCC-----------------CAAAATGAAAGTCCCAG--------------CAAAGAGAGAGGATTGGGAACAGTGGTGGAGTGACTATTGGCAAAGTG------CTTGGATCCCAGAGATAGAGTTTGTCTCATCCTCTTATGTAGT--------AAAATTAGTATGGAACTTGGT------------------TTTAGAGCCTCTGAA------GGAGGCACCAACTTATTGGACAGATGGAGGATGCTCCAGGAAATTAGGAGCGGGAAAGGCAGGATGGATAAATTCAAAAGGAGAAGAAGAAGTAGTCAATCTTCATGAAGGGTCAAATCAGCAAGCAGAGCTGACAGGAGTTTTGCTAGCTCTAAAAC---ATGGGCCAAAAAGAATGAATTTGGTAACAGACAGTCTTTATGC------------------ATTAGGGATAATTACTGGGCAGCCATAT-------GATCAGCTTCCATCTAGTAGAGGGGAGATTATTCAGGCAGGTATGGCTAAAGAAGCCATTCATGTAGCCTGGTGTCCAGCACATAAAGGG---ATAGGAGGAAATGAACTGATAGATCAAAAGGT----------------------------------------------------------------------------------------------------------------------A-----------------------GGAGTAAGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGT----------------------AATGTGGATAGATAAAATAGAAGCAGCAGAA-GAAGACCATCA-AAAGTTTCATAGTAATGTGCAGTATCTAAAAGAACAATTTGGGTTACCCACTGTAGTAGCAAAAGAAATTTGGGAAAGATGTTCAGAGTGTCAGAACA------------AAGGACAA------GCTGTTCATGGCCAGCTAGATTATAGCTAT------------GGCTTATGGCAATTAGATTGTACTCATGAGGAAGGA------------AAGGTTATCTTAGTAGCAGTACACGTCTGTACTCTGTTCTGCTGGGCAACCATATTAAAGAGAGAAACAGGGGAAGAA---ACAGGTAGGGCCCTCATAAAATTGGCTAGTC---AGTGGGAGGTTAGACAAGTTCACACAGATAATGGGCCAAATTTTGTAAGTCAGCACTTTAAGGCAGCAGTGTGGTGGCTAGGAATAGCACACACCACAGGACACCCCTATAATCCTCAATCACAAGGAGTTGTAGAGCAGAGAAACAAGGATGTTAAAAGAAAGATTAAGAAAATGAAAGATCAAGCAGAAACATTAGAAAGCAAAGTAGCAATG---------------GCAGTCTATGCGCTCAATTTTAAAAGAAAGGGAGGATTAGGGGGGAAGAGTCCATGGGAAAGACAAGTAGAAAGAGCAATAATAGAATTAGATACACAAAACCTAACAAAATTACAAAATCAAAAATTT---AAAAATTTTAAGGCCTACTGG---------AAAGAGCACACAGG--------AGAGTGGCAAGGACCAGGAGAACTGGTGTGGAAAGGTGAAGGAG-CGGTAGTCATCAGAAA---TTCTCAAGGTACCTTGTTTGTGAAACCTAGAAGAAAAGTAAAGATCACCAGA------CTCCAATATG------------------------GAGAAGATGT-----------GGGCAGTGAGAATTTGTTATCCAATGGGCAAAAGGAAGCCGAAACCGTTAAGGGAAT------------------GGATTAA------------------ SIVcpz_Central_African_Chimpanzee --------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAGGGAAAGGTTGGT--------CTCCGTGGAGCGG----GGGATCAAAGAGACC----------AGGGAACTTCCTGC---------------------------------------------------AGGGCAGG--------------AAGGAACCCACAGCTCCGCCCC---------------------------------------------------------------------------------------------------TAGAGAGTTATGGGTATCAGGAAGCAA---------------CAGGAAAGA-----------------GACAGGAGGAGGAGAGGGAGAAGGAAAAG------------------------------------GAACCCCTGTATCCTCCGTTAACCTCC--CTCAA------------------ATCACTCTTTGGCAGCGACCCCTCCTCGGAGTAAAAATAGAAGGGCAGCTAATAGAAGCTCTGCTAGATACAGGAGCTGATGATACAGTAATAG------ATAATGTACAACT----------A---ACAGGAAAATGGAGACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTT-AAACAATATGACAACATAGCAATAGAAAT---------------TGAGGGAAGAAAAACAACAGGCACGGTATTGGTG---GGACCAACAC------------------------CAGTGAATATAATTGGCAGAAATATATTGACACAAATTGGCTGTACTTTAAA------TTTTCCTA------TAAGTC---CCATTGAAACAGTGCCAGTAAAATTAAAGCCAGGAATGGATGGCCCTAGAGTAAAACAAT-GGCCTTTAACAGCAGAAAAAATTAAAGCATTAACAGAAATTTGTCAGGAAATGGAAAAAGAAGGAAAGATTTCAAGAATAGGGCCCGAAAATCCATATAATACACCAATTTTTGCTATAAAAAAGAAAGATAGTACAAAATGGAGAAAACTGGTAGATTTCAGGGAATTAAATAAAAGAACACAGGACTTTTGGGAAGTCCAGTTAGGCATACCACACCCGGCAGGTTTAAAAAAGAAAAAGTCAGTAACAGTGCTAGATGTGGGAGATGCTTATTTTTCCTGCCCATTAGATGAAAATTTTAGGAAATATACAGCATTTACTATACCCAGTGTAAATAATGAAACACCAGGAATTAGATATCAATATAATGTGTTACCACAAGGATGGAAAGGGTCACCAGCAATTTTTCAAAGCAGCATGATAAAAATTCTAACCCCATTCAGACAGCAGCATCCA---GACTTAATAATTTACCAGTATATGGATGATCTTTATGTGGGATCTGATTTGGAACTAAGAGAACATAGAGAAAAGGTAGAGCTACTCAGACAGCATCTACTTACTTGGGGGTTTACTACCCCTGATAAAAAGCATCAGAA---------GGAGCCACCTTTTTTGTGGATGGGCTATGAGCTCCATCCTGATAAGTGGACAGTGCAGCCAATACAGTTA------CCACAGAA------AGAGACCTGGACTGTCAATGATATTCAGAAACTAGTGGGAAAACTAAATTGGGCAAGTCAAATATATCCAGGAATAAAAGT---------AAAACAGTTATGCAAGCTGATAAAAGGGACAAAAGCTCTAACAGACATAGTGACCATGACACAGGAAGCAGAAATGGAATTAGAAGAGAACAG{AG}GAGATTTTAA{AG}GGATCCAGTGCATGGGGTGTACTATGACCCAGAAAAGGAATTAATAGCAGAA?TACAGAAACAGGGAAATAGTCAGTGGACTTATCAAATTTTCCAGGAACAGCA---------TAAGA------ACCTAAAAACAGGCAAATATGCTAGGCAAAGATCAGCACATACTAATGACATAAGACAATTAGCAGAGGTAGTACAAAAAATAGCTACTGAAAGTATAGTAATCTGGGGAAAAACACC-----------------AAAATTCAGATTACCTG--------------TTCAAAAGGAGGTCTGGGAAACCTGGTGGTCAGAGTATTGGCAAGCCA------CCTGGATCCCAGACTGGGA?TTCGTGAATACCCCTCCCCTTGT--------AAAATTATGGTACCAATTGGA------------------AACAGAACCCATACC------AGGAGCAGAAACGTTCTATGTGGATGGGGCAGCTAACAGAGAGACAAAGAAAGGAAAAGCAGGCTACGTCACTGATAGAGGCAGACAGAAAATAGTAAACTTAGAAAATACCACTAATCAGAAAGCAGAACTGACAGCTGTTTATCTAGCATTACAAG---ATGCAGAACATATAGTTAATATAGTCACTGATTCCCAATATGT------------------GTTAGGGATAATTCACTCCCAGCCAGAT-------CAAAGTGAGTCAGAATTGGTTAATCTAATAATAGAAGAGTTAATAAAGAAGGAAAAAAGTTACCTTTCATGGGTGCCAGCACATAAAGGA---GTTGGAGGAAATGAACAAGTAGATAAATTAGT--------------------TAGTTCT------------------------------------------------------------------------------------------------------------------GGGAATCAGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGT----------------------TCTCTTTTTAGATGGTATAGATTAAGCACAAGGAAGAACATGAGGAAATATCATAACAATTGGAGAGCTATGGCAAGTGATTTCAATATACCACATATAGTGGCCAAAGAACTAGTAGCCCGTTGTGATAAATGCCAACTAA------------AAGGAGAG------GCCATGCATGGGCAAGTAGACTGCAGCCCA------------GGCATATGGCAATTAGACTGCACACACCTAGAAGGA------------AAAGTTATCCTGGTGGCAGTACATGTAGCCAGTGGGTACCTAGAGGCAGAGGTCATTCCTGCAGAGACTGGACAGGAA---ACAGCTTATTTTATTCTAAAATTAGCAGGAA---GATGGCCTGTAAAAGTAATCCACACTGATAATGGGCCTAACTTTACCAGTAATACAGTTAAGGCAGCCTGCTGGTGGGCAGGCATCCAACAGGAATTTGGAATTCCCTATAATCCACAAAGTCAAGGAGTGGTAGAATCAATGAATAAGGAATTAAAAAAGATCATAGGACAAATTAGAGAACAAGCAGAACACTTGAGGACAGCAGTCCAGATG---------------GCAGTGTTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACACTGCAGGAGAAAGAATTATAGACATCATAGCAACAGACATACAAACAACTAATCTACAAA---AACAAATTTTAAAAGTT---CAAAATTTTCGGGTCTATTAC---------AGGGACAGCAGAGATCC-----CATTTGGAAAGGACCTGCCAGACTTCTGTGGAAAGGTGAAGGGG-CAGTGGTAATTAAA------GAGAGAGAGGAAGTTAAAGTAATACCCAGAAGGAAAGCAAAAATAATTAGG------GATTATG---------------------------GAAAACAGAT-----------GGCTGGTGATGATAGTATGGCAGGTGGACAGGATGAGAGTCAAGGCCTGGAA---------------------------TAG------------------ SIVcpz_Eastern_Chimpanzee --------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAGGGAAACGCACCC--------CCTTGTGGGG-------------GTGCAGACC----------AGGGAACTTTGTGC---------------------------------------------------AGAACACC--------------------------------------------------------------------------------------------------------------------------------------CCAGAGAAAGGGAAGGCTCAGGAGCAGGAG-----------ACAGCACAGAC-----------------------------ACCAGTGGTGCCAACTGCCC-------------------------CACCACTGGAGATGACGATGAAAGGCGGGTTCTCC--CTCAA------------------GTCAATCTTTGGCAGCGACCAATGATGACAGTAAAAGTCCAGGGACAAGTCTGTCAAGCTCTTTTAGATACTGGAGCAGATGACAGTGTTTTTT------GTAACATCAAATT----------A---AAGGGACAGTGGACACCAAAAACCATAGGAGGAATAGGAGGATTTGTACCAGTT-AGTGAGTACTATAATATTCCAGTACAAAT---------------TGGCAATAAAGAAGTCAGAGCCACTGTCCTAGTG---GGAGAAACCC------------------------CCATTAATATAATAGGTAGAAATATTTTAAAGCAATTAGGATGTACCTTAAA------TTTTCCTA------TTAGCC---CAATAGAGGTAGTAAAAGTACAATTAAAAGAAGGAATGGATGGGCCAAAAGTAAAGCAGT-GGCCCCTCTCCAAGGAGAAAATTGAGGCATTAACAGAAATATGTAAGACATTGGAAAAGGAAGGAAAAATTTCTGCAGTTGGACCAGAAAACCCATATAACACACCAATTTTTGCCATTAAGAAAAAGGATACCTCTAAATGGAGAAAATTAGTAGATTTCAGAGAACTGAATAAAAGAACTCAAGATTTTTGGGAGTTACAGCTAGGAATACCCCATCCGGCAGGGTTAAGAAAAAGAAATATGGTGACAGTACTGGATGTAGGGGATGCCTACTTTTCCATTCCCCTGGATCCAGACTTCAGAAAGTATACAGCTTTTACCATACCCAGTCTCAATAATAACACACCAGGGAAAAGATTTCAGTATAACGTGTTACCTCAAGGTTGGAAGGGATCTCCAGCAATTTTTCAGAGCAGTATGACAAAAATCCTAGATCCTTTCAGAAAAGAACACCCA---GATGTGGACATTTACCAATATATGGATGATCTTTACATAGGTTCAGATCTTAATGAAGAGGAACATAGGAAACTGATAAAGAAGCTGAGACAGCATCTGTTAACATGGGGATTAGAGACCCCTGACAAAAAGTATCAGGA---------AAAACCTCCATTCATGTGGATGGGCTATGAGCTACATCCAAATAAATGGACAGTTCAAAATATCACATTA------CCAGAACC------AGAGCAGTGGACAGTGAATCATATCCAGAAGTTGGTAGGCAAACTTAATTGGGCCAGTCAAATTTATCATGGAATAAAAAC---------TAAAGAACTATGCAAATTGATTAGAGGAGTAAAAGGATTAACTGAGCCAGTAGAAATGACCAGGGAAGCAGAATTGGAGTTAGAAGAAAATAAGCAGATTCTAAAAGAAAAGGTTCAAGGAGCATACTATGATCCTAAATTACCTCTGCAAGCAGCAATACAGAAGCAGGGGCAAGGACAGTGGACATATCAGATATATCAGGAAGAAGG---------GAAAA------ATTTAAAAACAGGAAAATATGCAAAATCACCAGGTACCCACACCAATGAGATAAGACAATTAGCAGGACTGATACAGAAAATAGGCAATGAGAGCATAATAATTTGGGGTATTGTGCC-----------------TAAATTTTTATTACCTG--------------TATCCAAAGAGACATGGAGCCAGTGGTGGACTGATTACTGGCAAGTTA------CCTGGGTACCTGAGTGGGAATTTATTAACACCCCACCACTAAT--------CAGGCTATGGTACAATCTGTT------------------GTCTGACCCCATCCC------AGAAGCAGAAACCTTTTATGTAGATGGGGCAGCAAACAGAGACAGTAAAAAGGGAAGAGCAGGATATGTAACAAACAGAGGCAGATACAGGTCAAAGGACTTAGAGAACACCACTAATCAACAAGCAGAATTATGGGCAGTAGATCTAGCCTTAAAAG---ACTCAGGAGCACAGGTAAATATAGTCACAGATTCCCAATATGT------------------TATGGGAGTTTTACAGGGATTACCAGAT-------CAAAGTGACTCCCCCATAGTAGAGCAAATTATTCAAAAGTTAACACAAAAGACAGCAATTTATCTAGCATGGGTACCAGCCCATAAAGGT---ATAGGGGGTAATGAAGAAGTAGACAAATTGGT--------------------TAGTAAA-------------------------------------------------------------------------------------------------------------------AATATTAGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAT----------------------ATTATTCCTGGATGGAATTAATGAAGCACAG-GAAGACCATGA-TAAATATCACAGTAATTGGAAAGCTTTAGCTGATGAATATAATCTGCCCCCAGTTGTGGCTAAAGAAATTATTGCTCAGTGTCCAAAATGCCATATAA------------AAGGAGAG------GCTATACATGGACAGGTGGACTACAGTCCA------------GAAATCTGGCAAATAGACTGTACCCACCTAGAAGGA------------AAGGTCATCATAGTAGCAGTGCATGTAGCTAGTGGTTTCATAGAAGCAGAAGTCATACCAGAAGAAACAGGAAGAGAA---ACCGCTTACTTCATCCTAAAATTGGCAGGAA---GATGGCCTGTAAAGAAAATACATACAGATAATGGACCAAATTTTACTAGTACAGCAGTGAAGGCAGCCTGCTGGTGGGCACAAATTCAACATGAATTTGGGATTCCATATAATCCTCAAAGTCAAGGAGTAGTAGAATCTATGAATAAACAATTAAAGCAAATTATAGAGCAAGTCAGGGACCAAGCAGAGCAACTGAGGACAGCAGTAATCATG---------------GCAGTGTATATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGAGTACACTGCAGGGGAAAGACTATTAGACATACTAACTACAAATATACAGACAAAACAATTACAAA---AACAAATTTTAAAAGTT---CAAAATTTTCGGGTTTATTAT---------AGGGACGCCAGAGATCC-----AATTTGGAAGGGACCAGCGCGACTACTGTGGAAAGGTGAAGGGG-CAGTAGTAATAAAA------GAAGGAGAAGACATTAAAGTAGTACCCAGGAGAAAAGCAAAAATCATAAAA------GAGTATG---------------------------GAAAACAGAT-----------GGCAGGTGCAGGTGGTATGGATGATAGACAGAATGAGACTTAG--------------------------------------------------------- SIVdeb_De_Brazzas_Monkey --------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAGGGAAAC--------------TTCCCTGGGGGAG----------GAGAGCCCC----------CAGGAATTTCATAGAG------------------------------------------------------------------------------CAGCAACACCAGACATGGGGCA--------------------------------------------------------------------------------------------TAGGGAAGTACATACCGGAGGGAGGGGACGAGATCTTCTCCTCTTCCAGGG--------TACCGGAACAGAAACCCCAGCAGCAGGAGGAGACGAGG------------------------------------AGAGGGAAATACCCAGATTTATCGGAC--TTGAA------------------GTCCCTCTTTGGAGAAGACCAGTAACCACAATAGAGATAGAGGGAAGAAGGGTGCAGGTTCTATTAGATACAGGGGCAGATGATACTATAATTCATGAGAAAGATATTCAACT----------T---ACCTCACCCTTTGTCCCAAAAACAGTAGGGGGTCTGGGAGGTTTTATAAATGTA-AGATGTTATCCAGGGATAGAAATCCAATG---------------TCAAGGTAAGGTAGCAGTAGGGGAAGTCCTAGTG---GGAGAGACAC------------------------CCATTAATATTTTAGGGAGGAATTTCTTAGCACCCCTAGGCTTCTCGATAAA------CATGCTAG------AGAGTC---AGATTCAATATACCCCAGTGAAATTAAAAGAAGGGAAGTCAGGACCAAAAGTCAAACAATGGGCCTCTAGCCAGGGAAAAGATAGAGGCTCTCAGGGAAATAGTGGGAAAGATGGTGGAGGAAGGCCAA-TGGCTCCTGCCTCACCCACCAATCCATATAACTCACCTGTGTTTGCCATTAAAAAGAAAGACAAGAACAAATGGAGAATGTTAATAGATCTTAGAGAATTGAACAAGGCAACACAACCAGTTTGGGAGGTCCAGACAGGGATCCCGCACCCAGCAGGTCTGCCACAGAAAAGGCAGATAACAGTTTTGGACATAGCAGATGCATACTATTCTATACCATTAGATCCATCCTTTGCTCAGTATACGGCATTTACTATACCATCAGTTAATAACACAGCCCCTGGAGAGAGGTATGAGTTCAGGGTGCTGCCACAAGGATGGAGTGCATCACCAGCTATATTCCAACACACTGTTCATCGGGTATTGGAAGGATTTAGAAAGAAATACCCA---GATGTACTCATAGTCCAGTACATGGATGACCTATTGGTAGGGTCAGACAGAACAGAAGAACAACACAGACTAGTAGTCAAAACACTAAGAGATTATCTCCTAGAGAGGGGGTTAAAAACACCCCCAGAGAAATTTCAGGC---------AGAGCCCCCCTATCAGTGGATGGGATATGTCCTTCATCCAAAAAAGTGGACTACCCAACCAATTCAGATC------CCTGAGGA------AGAGGAATGGACTGTTAATAAAATACAGAAACTAGTAGGAATCTTGAATTGGGCAAGCCAAATATATTCAGGGATAAAAAC---------AAAACACCTGTGCAAGAGTATTAGAGGGGTTCCAGGGTTAACAGACCCTGTAAAGTTAACAGAAGAGGCACAGGCCGAGCTGGAAGAAGCCAGACAGATCTTAAAAGAACAAGTGTCAGGGACCTATTACAAAGAACAGGAGGACCTCATAGCAGACATTACTAAGCTTTCAGAAGGGCAATGGGGATACACCATTAGACAGTCAAAGG------------GAA------TCCTGAAAACAGGCAAATATGCAAAGGCAAAAGGGGCACATTTCAATGATTTTCATCAGATAGCAAAATTGATGATGAAGGTAGGAACAGAAAGCATAGTAACATGGGGGAGGTTACC-----------------CACATTTAGGTTACCTG--------------TCCAGAAGCAGGACTGGGATGGATGGTGGCATGAGCATTGGCAAGCCA------CTTGGATCCCAGAATGGGAGGCGGTACACACTCCTCCCCTAGT--------CAGATTATGGTATTCCTTGGT------------------TTCAGAACCTATAAA------AGAAGCAGATACATATTATGTGGATGGAGCAGCTAACAGAGAATCCAAGGAAGGGAAAGCAGGGTACATTTCAGAGAGAGGAAAACAGAGTGTAAAGGCCTTAGAAAACACTACCAATCAAAAGGCAGAATTAACAGCAGTTCTCATGGCCTTAGAAG---ATAGTGGGGAAAAGGTGAACATAGTAACGGACTCCCAGTATGT------------------ACTAAACATACTAACAGAACACCCCACA-------ACCACTGAACATGAATTAGTAGAGAAAATAATTCAACAACTACAGAAGAAACAGGAAGTATATCTTCAGTGGGTGCCAGCTCATAAAGGT---CTGGGAGGTAATGAACAAATAGATAAATTAGT--------------------TAGTAAG-------------------------------------------------------------------------------------------------------------------GGAATTAGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAT----------------------CCTTTTTCTAGAAAGAGTAGAAGAGGCTCAG-GAAGATCACGA-TAAATACCACAGTAATTGGAAACAGCTAAGGGAGGAGTTTAATCTCCCCACCTTAGTTGCAAAGCAAATAATTAATCAATGTCCCAAATGTCAAATAC------------ATGGGGAA------CCCAAACATGGACAAGTCAATGCAGACTTG------------GGTATTTGGCAAATGGACTGCACACATTTAGAAGGA------------AAAGTCATAATAGTAGCAGTTCATGTGGCTAGTGGATTTACAGAAACCCAGGTGTTAAAGGAGGAAACAGGAAAACAG---ACAGCTTTATTCCTGTTACAATTAGGGGCTA---GGTGGCCCATACAACAAGTTCACACAGACAATGGACCCAACTTTATTAGTCAGGCATTTGCTGCCGCCTGTTGGTGGTTAGGGATAGAGCACACCACAGGGGTTCCATACAACCCACAGAGTCAAGGAGTAGTAGAAAACAAAAATAGACAATTAAAGGATACAATCACACAAGTTAGGGAAGATGCACAACGATTGGAAACAGCAGTAGCTATG---------------GCTACTCACATTCTTAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACCCCTTCAGAAAGGATAGTCAATATGATTAATACAGAACTAGAAATAAAATACCTACAAC---AAAAAATTTCAAAATTT---TCAGGATTCAAAGTCTACTAC---------AGAGAAGGAGCTGATCC-----CAGTTGGAAAGGCCCAGCAACACTCCTGTGGAAAGGAGAAGGAG-CAGTGGTAATCAAATT---GGACACAGGGGATTTAAAAGTAGTTCCCAGAAGAAAAGCAAAAGTAATAAAG------GACTATG---------------------------GAAAAGATGT-----------GGGTAGTAAGATTGACCCACAAGATACCCATGAA---------------------------------------------TAA------------------ SIVden_Dents_Mona ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGAGCCCAGTGAGGGTC--------CAGCAGCAACC-------------------------------------------------------------------------------------------------ACAGTACCCACAAAATTTTCAAGAGGGGGGAAAC-----------------------------------------------------------------------------------------AGACAATCTTGTCAGGAAGACAAGA---------------GGCAGAACA--------------------AGCAGTCCCATCAGGAGGACGAGGAG------------------------------------ACAACGAGGGAGAGTCTTTATCCTTCG--TTGAA------------------GTCTCTCTTTGGAGACGACCAATAGGGCAGATCTGGGTTCAGGGACAAAGGGTAGAGGTCCTTATAGATACAGGGGCAGATGACACCATTATAGCAGAACAAGATATAAATTTGGG-------A---ACAGAGGGATGGATCCCAAAAACAGTAGGGGGAATAGGAGGATATATTAATGTT-CAGGCATACCCAGGGATAGAAATTAAGCT---------------TATGGACAAAGTAGCGGTAGACACAGTATTAGTA---GGACCTACAC------------------------CCATAAACATCTTAGGAAGAAACTATCTTAGTAAGTTAGGAGTAACACTAAA------CATGGCAGTACAGCAAATGC---GGCCTCAAGTCACCCCAGTAAAATTAAAACCAGGATTTGATGGCCCTAGAATAAAACAAT-GGCCTTTAACTACAGAGAAATTAAAAGCTTTACAACAGATAGTGACACAGATGGAAAAGGAGGGAAGGTTGGAAAAGGCGCCACCCACCAACCCTTACAATACACCTGTGTTTGTAATTCCAAAGAAAGACAAAACACAATATAGGATGTTAATAGATTTCAGGAAATTAAATGAGGCCACCCAGGACTTCTGGGAAGTACAATTAGGTATACCACATCCTGCAGGATTACAACAGAAGGAACACATCACTGTGTTAGACTTGAAAGATGCATATTATAGTGTGCCTTTGGATCCAGATTTTGCACAATACACAGCATTTACAGTGCCGTCCATTAACAATGAAGGACCAGGACAAAGGTACATTTTCAAAGTCTTACCACAAGGATGGGTAGGATCGCCTACCATTTTTCAGGCCACAGCAGATAAAATGCTTAGCCAATTTAGGAAGGCCCATCCT---GATGTGATTTTAATCCAGTATATGGATGATCTCTTGGTAGCATCAGATAGATCCCTAGAACAGCACAGGAAAATGGTTAAGGAACTAAGAGACTTCTTGGCAGTATGGGGCTTTGAGACCCCTGATGCCAAATTTCAAGA---------AACACCACCCATACAATGGATGGGGTATGAATTACACCCCAAACACTGGCAAATACAGAAAATAGACCTGCCATTGCCAGAGGA------TGGGCAGTGGACGGTGAATGCAATTCAGAAGCTAGTAGGAGTATTGAATTGGGCAAGTCAGTTGTACTCAGGAATAAAGAC---------AAAAGAATTATGTAAGAGCATTAGAGGAGTAAAAGACTTAGGAGAAACCATTTCACTCACGGAGGGAGCAGAGGCAGAGCTTAAAGAAGCACAAGAAATATTAAAAGAAAGTATTTCAGGAAGTTATTATAGGCCAGAGAAACCTTTGATAGCAGAGATCTCTAAATTAGGAGAAAATCAGTGGGGATATACAATCAAACAGGAAAAAC------------ATC------TACTCAAAACAGGCAAATACCATAAGGACAAAGGAAGCCATTATAACCCATATCAACAATTAGCCAAAGTGATGGCAAAAATAGGAAGAGAAGCCTTAGTAATCTGGGGCAGACTTCC-----------------TACTTTCAGACTCCCAG--------------TAAGCAAGGTAGATTGGGATGCATGGTGGTCAGAATATTGGCAAGTTA------ATTGGATACCTGACTGGGAAATGGTATCAACTCCACCCCTTCT--------AAGAAATTTTTATAATTTGGT------------------ATCAGAGCCCATAGA------CAAAGCGCCCACCTATTATACAGATGGAGCAGCAAATAGACAGACTAAACAAGGAAGAGCAGGATATGTGGCCACCAATGGCAAGCAAAAGGTAGTAACCTTGGAAGAAACAACCAATCAAAAGGCAGAATTAATAGGAGTCTTAATGGCCTTACAAG---ATAGTCCCAACAAGGTCAACATAGTCACTGATTCACAATATGC------------------CCTAGGCATCATAGCAGGTACACCCACT-------ACATCTGAACATCAGATAGTGGAACAGATCATACAAGCTATGCAAGGCAAGGAAGAAATATACATCACCTGGGTTCCAGCCCACAAAGGA---ATAGGAGGCAATACAGAAATAGACAAGCTAGT--------------------TAGTAAA-------------------------------------------------------------------------------------------------------------------GGGATCAGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAT----------------------CCTATTCTTAGAACAAATTCCACAAGCTCAA-GAAGAACATGA-TAAATACCATAGCAATTGGAAAGAGATCAGAGATAAGTATGGCCTACCAACTATGGTAGCTAAGGAAATCATTAATGTCTGTCCAAAATGTCAGACAC------------ATGGGGAA------CCAATCAGAGGACAGGTGGATGCCTCTCTA------------GGAACATGGCAGATGGATTGCACCCACTTAGAGAAT------------AAAGTAATAATAGTAGCAGTAAATGCAGCCAGTGGGTACCTAGAGACAAAAATTTTGCCAGCGGAGACAGGCAAAGAA---ACAGCACTATTTTTACTGCAGATAGCTGCTA---GATGGCCAATCACCAAATTACACACAGACAATGGACCAAATTTTATCAGTCAAGCCATGCAGGCAGCATGTTGGTGGGCAAATATCAAACACACCACAGGAGTTCCATATAATCCACAAAGTCAGGGTATTGTAGAAAATAAGAACAAGCAATTAAAGGAAGTTATAGCACTAGTAAGGGAAGATGCAGAAAGATTAGAAACAGCACTAGCAATG---------------GCAACCCTCATTCTTAATTTTAAAAGAAGGGGAGGACTAGGGGATATGACAGCAGCAGAAAGATACATTAACATGCTAAATACACATTTAGAAATACAACATACCAAAC---------AACCAAAATTT---TCGAATTTTAAGGTCTATTAC---------AGAGAGGGAGCTAATCC-----GCAATGGCAAGGACCAGCTGAGCTGCTTTGGAAAGGTGAAGGAG-CAGTTGTCATCAAGAC---ACAGGCAGGAGACATCTTCCCGGTACCTAGAAGAAAGGCAAAAATCATCAAG------CCATATAATGCAGAATCTAGGAAGGGAGAACAGAACAAAGGAAT-----------GGATAGTGAGACTGACATA------------------------------------------------------------TAA------------------ SIVdrl_Drill --------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAGGGAATA--------------CTCCCTGGGGCAG----------CGGGAAACC----------CAGGAATTTTCCTC---------------------------------------------------AGGCCTCG--------------CTGACCCCATCAGCTCCTCCATTGCCAGGA------------------------------------------------------------TACCTCCAGGAGGATCCGGCCGAGAGGATGCTCCAAAAGTACATGGAGCAGGGAGCTC---------------AGCAGAAGA-----------------GACAACAGAGACAACAACAGCAGAAGAGG------------------------------------GGCCCCTACGAGGAGGCTTACAACTCC--CTCAG------------------TTCTCTCTTCGGCTCAGACCAACTACAATAGTAGAGGTAGAAGGGCAAAAGGTAGAGGCTTTACTAGACACAGGAGCAGATGATACAGTAATTC------AAGGATTGGAATT----------A---ACAGGAAAATGGAAGCCACAGATTATAGGAGGAATTGGAGGAACTATTAATGTG-AGACAATATTTTAATTGTGAAATTAAGAT---------------AGCAGGGAAAATTACTCATGCTTCGGTGTTGGTA---GGCCCTACCC------------------------CTGTAAATATTATAGGTAGAAATGTACTCTGTAAATTAGGAGCTACTCTTAA------TTTTCCTG------TTAGTC---AAGTAGAACCAGTAAAAGTAACACTAAAACCAGGAATGGATGGACCAAAGATAAAACAAT-GGCCCCTCTCCAAGGAGAAAATTGAAGCCTTGAAAGAAATATGTGAGCAAATGGAGAAGGAAGGTCAAATAAGTAGAATAGGTCCAGAAAATCCATACAACACACCGGTGTTTTGCATTAAGAAGAAAGATGGTACCAAATGGAGAAAATTAGTAGATTTCAGGCAATTAAATAAGGCAACACAGGACTTCTTTGAGGTGCAGTTGGGGATACCACACCCGGGAGGCTTAAAAGCATGCGAACAGATCACTGTACTGGATGTAGGTGATGCCTATTTCTCATGCCCTCTGGATCCGGACTTTAGAAAGTACACTGCATTCACCATTCCATCGGTGAATAATCAGGGCCCAGGAATCAGGTATCAGTATAATGTCCTCCCACAGGGATGGAAAGGCTCACCTGCAATCTTCCAAGCTACAGCTGACAAGATCTTACAGCCATTCAGAGAGAAAAATCCA---GATGTGATTATATATCAGTACATGGATGATCTGTTTGTAGGAAGTGATAGACCAAAACATTTACATGAGCAGATGATTAAAGAATTAAGAACACATTTAAAGTTCTGGGGGCTCGAGACCCCGGACAAAAAATTTCAGGA---------CAATCCTCCTTATGAATGGATGGGGTACCAGCTGCATCCAAAGAAGTGGACAGTGCAAGAAATTCGCTTG------CCTGATAA------AGAAATTTGGACTGTTAATGATATTCAGAAATTAGTAGGAGTGCTTAATTGGGCTAGTCAAATTTATTCCGGAATTAAAAC---------AAAGGAGCTCTGTAAATTAATTAGGGGAGCCAAACCCCTAGATGAAGAAGTAGAATGGACTAGGGAAGCAGAACTAGAATATGAAGAAAATAAACTAATAATAAAAGAGCAAATGCATGGGGTATATTATCAGCCAGAAAAACCCCTAAAAGCCAAGATACAAAAACTGGGTAATGGACAATGGTCATATCAGATAGAACAAGATGATAA---------CAAGC------CACTAAAAACAGGAAAATATGCTAAGGTAAAGAATAGTCACACCAATGATATGAGAATGTTAGCAGGACTAGTACAAAAGATAGCAAAAGAGGCACTGGTAATCTGGGGAAGGTTGCC-----------------CATTTTCTACTTACCAG--------------TAGAAAGGGAAGTTTGGGAACAATGGTGGCAGGAGTACTGGCAGGTAA------CATGGATCCCTGATTGGGAATTTATATCAACACCCCATCTCAT--------CAAGTTATGGTATAACTTGCT------------------GAGTGACCCAATACC------AGGGGAAGAAGTTTATTATGTGGATGGAGCAGCTAACAGAGTTAGTAAAGAAGGAAAAGCTGGCTATGTTACCTCCAGGGGAAAAGAAAAAGTAATAGCCATAGAAGAAACCACCAATCAGAAGGCTGAATTACAGGCCATTCTGTTAGCCTTGAAGG---ACTCTGGTCCAAAAGTCAATATAGTGACGGATTCACAGTACGC------------------CATGGGTATAATATCCTCCTCCCCAGAA-------ATCAGTGACAATCCTATAGTGAATCAAATTATAGAACAAATGATCAGTAAAGAAGCAGTTTACTTAAATTGGGTACCAGCACATAAAGGA---ATAGGAGGTAATGAGGAGGAGGACAAACTAGT--------------------TAGTAGA-------------------------------------------------------------------------------------------------------------------GGAATAAGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGT----------------------GTTATTCCTAGATAACATGGAAAAAGCACAG-GAAGAACATGA-TTTATACCATAATAATTGGAGATCCTTAGCACAAGAATTTGGTTTACCAGGGATAGTGGCAAAAGAAATAGTGGCACAGTGTCCTAAATGTCAAATAC------------ATGGAGAG------CCAATACATGGCCAAGTAGATGCAAGCCCA------------GGAACTTGGCAAATGGACTGCACACATTTAGAAGGA------------AAGATAATCATAGTGGCAGTCCACGTAGCAAGTGGACACATAGAAGCAGAAGTAATACCAGCAGAAACAGGAGAGAAA---ACAGCTTATTTTCTGCTAAAATTAGCTGGCA---GATGGCCAGTATCACACTTGCACACAGATAATGGACCAAATTTCACCAGTGAAAAGGTAGCAACAGTATGCTGGTGGGCTAAGATAGAGCATACCACAGGAGTTCCCTATAACCCCCAGAGTCAAGGAGTGGTAGAATCAATGAACAATCAGCTAAAGAAAATTATAGGACAAATTAGAGATCAGGCAGAAAAACTAGAGACAGCAGTTCAAATG---------------GCAGTACTGATTCACAATTTTAAAAGAAAAGGGGGGATAGGGGAGTACAGTGCAGCAGAAAGAATAGTAGACATTATAGCCTCTGACCTCTTAACAAGCAAACTACAAC---AAAATATTCTCAAAATT---CAAAATTTTCGGGTTTATTAC---------AGAGAGGGAAGAGATCA-----GTTGTGGAAAGGACCAGCAGAACTTGTCTGGAAAGGGGAAGGAG-CGGTGGTCATCAAG------GAAGGTACTGACTTGAAAGTAATACCTAGAAGAAAAGCAAAGATCATTAAA------GATTATG---------------------------GAAAAAATGT-----------GGATAGTCATACCAACATGGAGAGTTGA------------------------------------------------------------------------ SIVgor_Gorilla --------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAGGGAAATACTGGC--------CTCCAGGGGG-------------CGAGAGGCC----------AGGCAACTATGTGC---------------------------------------------------AGAAGCAA--------------GTGCAACCAACAGCCCCACCAA---------------------------------------------------------------------------------------------------TGGAGGAG------------GGAGAAA--------------------------------------------------AGGAGATGAGGAAACCAGAA------------------------------------AAGGAGGAACTTTATCCTCTAACTTCC--CTCAA------------------ATCACTCTTTGGGACAGACCAGTAATACCTGTGAAGATAGGGGGACATCTATGTGAGGCTTTGTTAGACACAGGGGCTGATGATACAGTAGTAG------AACACTTATCTTT----------A---GAAGGTAGGTGGAAACCAAGAATGATAGGAGGCATAGGAGGATTTATTAAAGTA-AAAGAATATGAAGATGTAGAAATAGAAAT---------------AGAACATAGGAAAGTAGTAGGGACAGTTCTAGTT---GGACCAACCC------------------------CTGTAAATATTATAGGAAGGAATATTTTAACAAAAATTGGATGTACCCTAAA------TTTTCCCA------TAAGCT---CCATAGATGTAGTACCCGTATCTTTAAAGCCAGGGATGGATGGACCCAAAGTCAAGCAAT-GGCCTTTGTCAAAAGAAAAAATAGAAGCCTTAACAGCTATTTGTCAGGAAATGGAACAGGAAGGCAAGATATCAAAAATTGGGCCTGAAAATCCATATAATACACCTATTTTTGCCATAAAAAAGAAAGACAGTACTAAATGGAGAAAATTGGTAGATTTTAGAGAATTAAATAAACGAACACAGGATTTTTGGGAAGTTCAGTTAGGGATTCCTCACCCAGGAGGGCTTAAAAAGAAAAAATCAGTAACAGTACTGGATGTTGGGGACGCTTATTTTTCTTGTCCCTTAGACCCAGATTTTAGAAAATATACAGCTTTCACAATTCCTAGTGTGAATAATGAGACACCAGGGGTAAGGTATCAGTACAATGTACTACCCCAGGGATGGAAAGGATCTCCAGCAATTTTCCAGCACTCCATGACAAAAATACTTGATCCTTTCAGAAAGAAAAACCCA---GAGATAGAAATCTATCAGTACATGGATGACTTGTATGTAGGGTCAGATTTACCTATAACAGAACATAGGCAGAAGGTAGAAAAACTCAGGGAACATTTATATGCATGGGGATTCACCACTCCTGACAAAAAGCATCAAAA---------GGAACCTCCCTTTTTGTGGATGGGGTATGAGCTGCACCCTGATAAGTGGACAGTGCAGCCTATAAAGTTA------CCAGAAAA------GGAAAGTTGGACAGTCAATGATATCCAGAGATTGGTAGGTAAACTAAATTGGGCTAGTCAAATATATCCAGGGATAAGAGT---------AAAAGAACTCTGCAAATTAATTAGGGGTACTAAATCACTTACAGAAGTAGTGACCCTTAGTAAAGAAGCAGAATTAGAACTAGAAGAGAACAGGGAAATATTAAAAGAACCCGTACATGGAGTGTATTACCAGCCTGAAAAGGAATTAATAGTGAATGTGCAAAAACAAGGAGAAGGACAGTGGACTTATCAGATCTTCCAGGATGAATA---------CAAGA------ATCTAAAGACAGGAAAGTATGCTAGACAAAAGGCCACTCATACTAATGACATTAGACAGTTGGCAGAAGTGATACAAAAGGTCTCACAAGAAAGCATAGTTATCTGGGGAAAACTGCC-----------------TAAGTTCAGGCTACCCA--------------TATGTCGGAGTACCTGGGACGCTTTTTGGACTGACTATTGGCAGGCTT------CCTGGATCCCTGAGTGGGAATTTATTAGTACACCTCCCCTCAT--------CAAGCTCTGGTATCAATTGGA------------------AAAGGAACCCATACC------AGGAGCAGAAACCTTTTATGTAGATGGAGCAGCTAATAGAGAAAGTAAACAAGGAAAAGCAGGATATGTAACAGATAAGGGTAGACAGAAAATAAGAAAACTAGAGGGCACAACTAATCAGAAAGCAGAACTAGAGGCAGTCCTCTTGGCCTTAGAAG---AATCAGGAAAAAATGTTAACATAGTGACAGACTCCCAGTATGT------------------ACTAGGGATTATTGCAGCAAGTCCTGAT-------CAAAGTGACTCCCCCTTAGTGCAGAAAATAATAGAGGAAATGACAACGAAGGAAAAAGTCTATTTAGCTTGGGTACCAGCTCACAAAGGT---ATAGGGGGAAATGAAGAAATAGACAAATTAGT--------------------CAGTAAA-------------------------------------------------------------------------------------------------------------------GATATCAGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGT----------------------CTTATTCCTAGAAGGCATAGATCAAGCGCAG-GAAGATCATGA-AAAATATCACAGTAATTGGAGAACACTAGCCAGTGACTTTGGTCTGCCGCCAGTGGTAGCCAAAGAAATCATCAATAGCTGCCCTAAGTGCCATGTAA------------AAGGGGAA------GCTAGGCATGGACAAGTAGATTGCAGCCCA------------GGTATCTGGCAGTTGGATTGCACTCACTTAGAAGGG------------AAAATCATTTTAGTAGCAGTCCATGTGGCCAGCGGCTTCATAGAAGCTGAAGTTATTCCAGCAGAAACAGGGCAGGAA---ACAGCCTACTTCCTGCTCAAGTTAGCAGCTA---GGTGGCCAGTAAAAATAATACACACAGACAATGGGCCTAATTTTACTAGTGCCACAGTCAAGGCTGCCTGTTGGTGGCTCAATGTAACACATGAGTTTGGAATTCCCTATAATCCCCAAAGTCAAGGAGTAGTGGAATCTATGAACAAAGAATTAAAAAAGATTATACAACAAGTGAGAGATCAAGCAGAACATTTAAAGACAGCAGTGCAGATG---------------GCAGTATTTGTCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGATACACTGCAGGAGACAGGATAATAGACATGTTAGCCACACAAATACAAACAACAGAATTACAAA---AACAAATTTTAAAAATT---CAAAATTTTCGGGTCTATTAC---------AGAGACAGCAGAGACCC-----TATTTGGAAAGGACCAGCGACGCTCCTGTGGAAAGGTGAAGGGG-CTGTAGTCATTCAG------GACAAAGGGGACATTAAAGTAGTCCCTAGGAGAAAGGCAAAAATAATTAGG------GATTATG---------------------------GAAAACAGAT-----------GGCAGGTGATGATTGTGTGGCAGATACCCAGGGAGAGAGTGAAAGCCTGGAA---------------------------CAGTCTAGTTAA--------- SIVgsn_Greater_Spot_Nosed_Monkey --------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAGACCTTG--------------GCCGGGGGCG-------------ACGAGCCCC----------CAGGAACTTTCCAG---------------------------------------------------TAACTTCC--------------CTGCTGCCATCAGCCCCGGCGGAGGAGGTGGAAC------------------------------------------------------------------------------CCCAGCAGCTCAACCTGTCTCCGCCGGTGGGGGAGC-------CC----------------------------------------CAGAACAAGGAGCAGAAGGCA------------------------------------GAAAAGAGGAACACTCTTTATCCCTCC--CTGTC------------------ATCTCTCTTTGGGGAAGACCAATGAGAGAAGTCTCCATGGGGGGACAAGTGGTGTCCATGTTATTAGACACAGGGGCGGACGATACCATTGTCCAAGAATCAGCAATTGAATT----------A---GACACACCATGGACACCAAAAACGGTAGGGGGGATAGGGGGTTTAATACAAGTA-AAGGAACATAGACATGTAGAAGTGATCTT---------------TAATGAAAAAAGAATCAAAGCCACTGTACTTGTA---GGGCCCACAC------------------------CAGTGAATATATTGGGAAGAAATTGTTTAAGCAAGTTAGGAGTAACCTTAAA------CATGGTGC------AGCAGA---AACTAGAGCCCGTAGAAGTGCACCTAAAATCAGGAAAAGAAGGACCAAAGATTAAACAAT-GGCCCTTGTCTAAGGAAAAGATAGAGGCCTTAACCCAAATAACACAAGAAATGCTCAAGTTAGGCCAATTGGAAAAGATAGGGCCAGAAAATCCATACAACTCGCCAGTCTTTGCCATAAAAAAGAAAGACAAATCACAATGGAGAATGTTAATAGATTTCAGGAAATTGAATGAGGCTACGCAAGACTTGGCTGAGGTCCAGTTGGGGATTCCGCACCCAGCAGGACTAGAACAAAAAGAGCACGTAACTATAATAGATATGAAAGACGCTTATTACAGTGTACCATTGTATGAAGAATTCAGAAAGTACACTGCATTTTCAGTACCATCAGTAAACAATCAGACCCCAGCTGAGAGGTATCAGTTCAAAGTTTTACCTCAGGGTTGGAAGGCGTCTCCAACCATTTTTCAGGCCACTGTAGCTTCCTTGTTATATCAGATTAGAGACCAGGAGCCA---GATGTGGTAATAATACAGTACATGGATGACTTGTTGATAGGATCAGATAGGAAATTGGCAGAGCATAGGCAAGTAGTGCACAAAATAAGAAATTTGTTGACGTCCTATAACATCCAGACCCCCGAGGCCAAACACCAACA---------AGATTATCCAGTCAGATGGCTCGGGTATGAGTTGCACCCTAAGGGATGGAGGCTCCAACCAGTGGAGCTC------CCAGATCA------AGACATCTGGACAGTAAATGACATCCAAAAATTGGTAGGGAAGCTCAATTGGGTATCGCAAATACATCCTGGCATAAGGAC---------AAAACAGTTATGCAGATGTATTAGAGGAGCCAAAGGGCTAACAGAACAGGTGGAGCTCACTGAGGAAGCACAAATAGAGTTAGCAGAAAACAGAGAGATTCTAAAACAATCCTCAGAGGGCAGCTACTACGACGCAGAAAAGCCACTTGTGGTAGAAATTACCTCCCTAGGAGAACAGCAATGGGGATACATGTTCAGTCAGGACAGCA------------AGA------TGCTAAGATCAGGCAAATTTGCAAAAACCAGAACTGCACATATAAACTCTTATCAGCAATTGGCAGATGCTATGACCAAAGTAGGTAGGGAAAGTCAGGTTACTTGGGGAAAAGTACC--------------TGACAAATTCAGGATCCCAG--------------TAGTCAAGGAGCAATGGGATACGTGGTGGATGAACTATTGGCAGGCAA------CATGGATTCCCACCATAGAAGCAGTACACACACCACATTTGTT--------GAGACAGTGGTACACCCTAGT------------------CTCGGAACCCCTAGA------AAATGCAGTCACCTATTATGTAGACGGGGCAGCAAATAGGACCTCTAAATTAGGAAAAGCTGGCTATGTGACCAATACAGGAAAATATAGAGCCATAGAACTAGAAGGAACTACAAATCAACAAGCAGAACTCCAGGCAGTTCTTTTGGCATTAAAAG---AAGGACCACCAAGAATGAACTTGGTCACAGATTCCCAATACGT------------------AATGGGGATCTTACAAAGCCAACCAGAA-------GTATCCACCTCTCCCTTAGTGGAACAAATCATACAAGAACTGTTAGGGAAAGAGGCCGTCTACTTGAGTTGGGTTCCAGCACACAAAGGG---ATAGGAGGAAACACAGAGGTAGACAAATTAGT--------------------CAGCAGA-------------------------------------------------------------------------------------------------------------------GGGATCCGCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGT----------------------ACTCTTCATGGAGAACATAGAGCCCGCAGTA-GAGGACCATGA-AAAATATCATAGTAATTGGAAGTATTTAAGGGATCAATACAAAATCCCGGCACTATTGGCTAAAGAAATAGTAAACAAGTGCTCCAAATGTCAGATAC------------ATGGGGAA------CCAAAACATGGGCAAGTAAATGCAGAATTA------------GGCATATGGCAAATGGACTGCACACATCTGGAAGGC------------AAAGTTATCTTAGTGGCAGTCCACGTAGCCAGTGGGTATGTTTGGGCTAGGATAATACCCCAAGAAACAGGCAGACAA---ACTGCATTAAAGCTATTAGAATTAGCAGCAA---CATGGCCAGTAACTCACCTACATACAGATAATGGCCCCAATTTCATCTCTAAGGAACTGGAGGCAGCTTGTTGGTGGGCAAACATACAACACAGTACAGGGGTGCCATACAACCCGCAAAGTCAAGGGGTAGTAGAAAACATGAACAAACAACTCAAGGAAACAATCCAAAAGATTAGAGATGAGGTCACATACTTAGAAACAGCAGTAGCACAA---------------GCATGCTACATTCATAATTTTAAAAGAAAGGGAGGAATAGGGGATATGTGCCCTACAGAGAGGTTAGTGAACATGATCCACACAGAATTAGAAACACAACACTTAAACA---CACAAAGTTCCAAATTT---CAAAAATTTCGGGTTTATTAC---------AGGCAAGGAGCTAATCC-----TCATTGGCAAGGACCAGCAGTACTTCTCTGGAAGGGTGAAGGAG-CAGTAGTGGTCCAAAC---CCAAGCAGGTGAGATCATCACAGTCCCTAGAAGGAAAGCAAAGATCATCAAG------CCATATGGAGAGG---------------CAAAGGCAGAAGATGT-----------GGGTAGTGCAGCCCATACAAGTAATGACAGAGAGGAAGGTAGAATGGCTGAT---------------------------TAG------------------ SIVlhoest_LHoests_Monkey --------------------------------------------------------------------------------------ATTTGCACAGTGCCCAAAA------------------------CCAAAAGGAAAGGTGAATTTTTTAGGATATG--------------GTCCCTGGAGCAG----------CAAACCTCC----------AGGCAATTATCCTCTACTGGGAGG-----------------------AGCT------------------------------GCAGGGAGAATTCCATCAGCTCCCCCAATGGAGA------------------------------------------------------------------GTGCTCCAACAAAAGCAGAGAGAGCACTGGAGACTTACAGGACTTTAGGACAAC---------------AGCTGAAAA-----------------------------GGCAGCAGCAGCAAGTC------------------------------------CCACAGAAATGTGTGGACGAGCCCTGC--CTGAA------------------TTCACTCTTTCCAGACGACCAATAGAAAGTATATTGGTCAATGGGCAACCAGTGTCAGCACTGTTGGACACTGGGGCTGATGACACAATTTTTTCAGAAAATTCAGTAAGAAT----------A---GAAGGACCCTATACTCCAAGAGTAGTAGGGGGCATAGGGGGGCAAATTAGGGTA-AAAGAATATAGAGATGTCTTTATAGAAAT---------------AGCAGGAAAAACTACAGTAGGGACAGTCTTATTA---GGACCTACCC------------------------CAGTAGATATTGTAGGGAGGAATATTTTAACTGCAATGGGGGCCAAATTGAT------TTTAGCTCAGTTAAGTGATA---AAATTCCTATTACAAAGGTATCTTTAAAACCTGGGTGTGATGGACCAAGAGTAAAGCAGT-GGCCTCTATCAAAAGAGAAAATAGAAGGCCTACAAGCTATTTGTGATAGGTTAGAAAAAGAAGGAAAAATATCTCCAGTGGATCCAGGGAACCCATACAATACTCCAATATTTGCTATCAAGAAGAAAGACAAAAATGAATGGAGAAAGTTAATTGATTTCAGAAAGCTCAATGAATTAACTCAAGACTTTCATGAGCTACAATTAGGTATTCCACACCCAGCAGGTATCAAGAAATGCAAACAGATTACAGTAGTAGACATAGGAGATGCCTATTTCAGTATCCCTTTAGATCCAAATTACAGAAAGTATACAGCATTTACTATACCTTCTCTCAATAATCAAGAGCCAGGAAAAAGATATCAGTACAATGTGCTGCCACAAGGGTGGAAGGGGAGCCCTTGTATATTTCAGGGAACAGTAGCAGGACTTCTCTCAGAGTTTAGGAAATTAAATCCA---GACATGATCATTTACCAATATATGGATGATTTATTCATAGGATCAGATAGAGAGAGAAAAGGACATGATCAGGCAGTAAAAGAACTCAGAGAACTTCTTATGACATGGAACTTAGAGACACCAGAAAAGAAGTTCCAAGC---------AGAGCCACCCTATCATTGGATGGGTTATGTACTGCATCCTGATAGGTGGGAAATAGAAAAGATTAAATTA------CCAGAGATGGATCTAACAAAAACTACAGTAAATCAAATACAGAAACTGGTGGGAGTACTTAATTGGGCAGCTCAATTGTATGATGGTATTAGGAC---------AAAAGAACTCTGCAAATTAATAAGGGGAGTAAAACCCTTGGAAGAAATCATAAACTGGACAGAGGAAGCCTTGGAAGAATATGGGCAGAACAAAGAGGTACTTAAAGAAAAGATGCAGGGAGCCTATTATGACCCAGAAAAGGAACTTATTGTCAGGGTACAGCAAAACAAAAAGGGGATAATTACTTTCCAGTGGAGACAAGGAAATA------------ACA------TCTTAAGAGCTGGGAGGTATCAAAGACAGAAGGCAGCACACACAAATCCCCTACAGAAATTAGTAGAAGCTATTCAGAAGATAGGAAAAGAAAGCATAGTCATCTGGGGCTTTGTGCC-----------------AAAAATTCAAGTCCCAG--------------TGACTAGAGAAGTCTGGGAGCACTGGTGGAGCGACCACTGGCAGGTTA------CATGGATTCCAGACTTAGAATTCATTTCTACCCCGCAATTAGA--------ACAAGAGTGGTACATTTGGGA------------------GGCAGAACCCATAAT------AGGGGTAGACACCTACTATGTAGATGGAGCAGCAGAAAAGGTAGGAAAAACAGGAAAAGCAGGATATATAACACAATCAGGGAAAGAGAAAGTAAAGGAGTTAACTGACACCACAAATCAGCAAGCAGAACTAGAGGCAGTTCTAATGGCATTACAAG---ATAGCAATAGTAAAGTAAATATAGTAACAGATTCACAATATGT------------------AATGAAAATATTGTCACAAAGACCAACA-------GAAACAGAACACCCCATAGTAAAAGACATCATAGAACAATGCAAGCAGAAAGATCAAGTTTATCTAGGATGGGTGCCTGCTCATAAAGGA---ATAGGAGGTAATCAAGAGGTAGACCACCTAGT--------------------AAGTAAA-------------------------------------------------------------------------------------------------------------------GGTATAAGACAGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGGT----------------------CATGTTTCTAGAAAAGATAGAACCTGCAGTA-GAAGAACATAG-CAAATTCCATAACAATGCAAAGGATCTAGAAGAAAAATTTAACCTACCCCCCATGGTAGCCAAACAAATTGTCAATGACTGTGCAAACTGTCAAAAGA------------AAGGAGAA------GCCATAACAGGACAAGTGGATGTCTCAGTG------------GGTATTTGGCAGCTAGACTGTACTCACTTAGAAGGA------------CAGGTCATTATAAATGCAGTCCATGTGGCCTCAGGCTTCATGGTTGCAGAAGTTATACCAGATGAGACAGGAAAAACA---ACGTCACATTTCCTGTTAAAATTATGCAGTA---GATGGCCTGTAAAACAAATACATACAGACAATGGTCCAAATTTTGTAAGTAAGGAGGTACAGGCAGTAACCTGGTGGATAGGGATAGAACATACAACTGGGATACCTTATAACCCTCAGAGTCAAGGGGTTGTAGAAGCAAAAAACAAAGTTTTAAAAAGTATTATAGAAAGAGTAAGAGAAGATGCACAGCAACTAAAAACAGCAGTACTAATG---------------GCAGTCCACATTCATAATTTTAAACAAAGGGGAGGACTAGGGGGGCTTACACCAGCAGAGAGGTTTATTAATATGATTAATGCAGAACTAGAAACACAATATCTACAAA---AATTAAATTCAAAAATT---TTAAAATTTAAGGTTTATTAC---------AGACAAGGAAGAGATCC-----TCAGTGGAAAGGACCAGCGCAACTTCTGTGGAAAGGAGAAGGTG-CTGTAGTGGTAAAA------GAAGGGGAGAACATCTTCTCAGTCCCCAGAAGAAAAGCAAAACTAGTAAAA------GATTATG---------------------------GAGAGGGACC--------AAAGGATAGTGAGAGTAGCCTGGATAACAAC---------------------------------------------------TAG------------------ SIVmac_Rhesus_Macaque -----------------------GTGTTGGAATTGTGGGAAAGAAGGACACTCTGCAAGGCAATGCAGAGCCCCAAGAAGACAGGGATGCTGGAAATGTGGAAAAATGGACCATGTTATGGCCAAATGCCCAGACAGACAGGCGGGTTTTTTAGGCCTTG--------------GTCCATGGGG-------------AAAGAAGCC----------CCGCAATTTCCCCA---------------------------------------------------TGGCTCAA-GTGCAT-CAGGGGCTGACGCCAACTGCTCCCCCAG------------------------------------------------------------------------------AGGACCCAGCTGTGGATCTGCTAAAGAACTACATGCAGCTGGGCAAGCAGCAGA---GAGAAAAGCAGAGAG-----------AAAGCAGAGAGAAGCCTTACAAGGAGGTG---------------------------------------------------ACAGAGGATTTGCTGCAC--CTCAA------------------TTCTCTCTTTGGAGGAGACCAGTAGTCACTGCTCATATTGAAGGACAGCCTGTAGAAGTATTACTAGATACAGGGGCTGATGATTCTATTGTAA------CAGGAATAGAGTT----------A---GGTCTACATTATACCCCAAAAATAGTAGGAGGAATAGGAGGTTTTATTAATACT-AAAGAATACAAAAATGTAGAAATAGAAGT---------------TTTAGGCAAAAGGATTAAAGGGACAATCATGACA---GGGGACACCC------------------------CGATTAACATTTTTGGTAGAAATTTACTAACAGCTCTGGGGATGTCTTTAAA------CCTTCCCA------TAGCTA---AAGTAGAGCCTGTAAAAGTCGCCTTAAAGCCAGGAAAGGATGGACCAAAATTGAAGCAGT-GGCCATTATCAAAAGAAAAGATAGTTGCATTAAGAGAAATCTGTGAAAAGATGGAAAAGGATGGTCAGTTGGAGGAAGCTCCCCCGACCAATCCATACAACACCCCCACATTTGCTATAAAGAAAAAAGATAAGAACAAATGGAGAATGCTGATAGATTTTAGGGAACTAAATAGGGTCACTCAGGACTTTACAGAAGTCCAATTAGGAATACCACACCCTGCAGGACTAGCAAAAAGGAAAAGGATTACAGTACTGGATATAGGTGATGCATATTTCTCCATACCTCTAGATGAAGAATTTAGGCAGTACACTGCCTTTACTTTACCATCAGTAAATAATGCAGAGCCAGGAAAGCGATACATTTATAAGGTTCTGCCTCAGGGATGGAAAGGGTCACCAGCCATCTTCCAATACACTATGAGACATGTGCTAGAACCCTTCAGGAAGGCAAATCCA---GATGTGACCTTAGTCCAGTATATGGATGACATCTTAATAGCTAGTGACAGGACAGACCTGGAACATGACAGGGTAGTTTTACAGTTAAAGGAACTCTTGAATAGCATAGGGTTTTCTACCCCAGAAGAAAAATTCCAAAA---------AGATCCCCCATTTCAATGGATGGGGTACGAATTGTGGCCAACAAAATGGAAGTTGCAAAAGATAGAGTTG------CCACAAAG------AGAGACCTGGACAGTGAATGATATACAGAAGTTAGTAGGAGTATTAAATTGGGCAGCTCAAATTTATCCAGGTATAAAAAC---------CAAACATCTCTGTAGGTTAATTAGAGGAAAAATGACTTTAACAGAGGAAGTTCAGTGGACTGAGATGGCAGAAGCAGAATATGAGGAAAATAAAATAATTCTCAGTCAGGAACAAGAAGGATGTTATTACCAAGAGGGCAAGCCATTAGAAGCCACGGTAATAAAGAGTCAGGACAATCAGTGGTCTTATAAAATTCACCAAGAAGACA------------AAA------TACTGAAAGTAGGAAAGTTTGCAAAGATAAAGAATACACATACCAATGGAGTTAGACTATTAGCACATGTAATACAGAAAATAGGAAAGGAAGCAATAGTGATCTGGGGACAGGTTCC-----------------AAAATTCCACTTACCAG--------------TTGAGAAGGATGTATGGGAACAGTGGTGGACAGACTATTGGCAGGTAA------CCTGGATACCAGAATGGGATTTTATCTCAACACCACCACTAGT--------AAGATTAGTCTTCAATCTAGT------------------GAAGGACCCTATAAA------GGGAGAAGAAACCTATTATACAGATGGATCATGTAATAAACAGTCAAAAGAAGGGAAAGCAGGATATATCACAGATAGGGGCAAAGACAAAGTAAAAGTGTTAGAACAGACTACTAATCAACAAGCAGAATTGGAAGCATTTCTCATGGCATTGACAG---ACTCAGGGCCAAAGGCAAATATTATAGTAGATTCACAATATGT------------------TATGGGAATAATAACAGGATGCCCTACA-------GAATCAGAGAGCAGGCTAGTTAACCAAATAATAGAAGAAATGATTAAAAAGTCAGAAATTTATGTAGCATGGGTACCAGCACACAAAGGT---ATAGGAGGAAACCAAGAAATAGACCACCTAGT--------------------TAGTCAA-------------------------------------------------------------------------------------------------------------------GGGATTAGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGT----------------------TCTCTTCTTGGAAAAGATAGAGCCAGCACAA-GAGGAACATGA-TAAGTACCATAGTAATGTAAAAGAATTGGTATTCAAATTTGGATTACCCAGAATAGTGGCCAGACAGATAGTAGACACATGTGATAAATGTCATCAAA------------AAGGAGAA------GCTATACATGGGCAGGTAAATTCAGATCTA------------GGGACTTGGCAAATGGATTGTACCCATCTAGAGGGA------------AAAATAATCATAGTTGCAGTACATGTAGCTAGTGGATTCATAGAAGCAGAAGTAATTCCACAAGAGACAGGAAGACAG---ACAGCACTATTTCTGTTAAAATTGGCAGGCA---GATGGCCTGTTACACATCTACACACAGATAATGGTGCTAACTTTGCCTCGCAAGAAGTAAAGATGGTTGCATGGTGGGCAGGGATAGAGCACACCTTTGGGGTACCATACAATCCACAGAGTCAGGGAGTAGTGGAAGCAATGAATCACCACCTGAAAAATCAAATAGATAGAATCAGGGAACAAGCAAATTCAGTAGAAACCATAGTATTAATG---------------GCAGTTCATTGCATGAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACTCCAGCAGAAAGATTAATTAACATGATCACTACAGAACAAGAAATACAATTTCAACAAT---CAAAAAACTCAAAATTT---AAAAATTTTCGGGTCTATTAC---------AGAGAAGGCAGAGATCA-----ACTGTGGAAGGGACCCGGTGAGCTATTGTGGAAAGGGGAAGGAG-CAGTCATCTTAAAG------GTAGGGACAGACATTAAGGTAGTACCCAGAAGAAAGGCTAAAATTATCAAA------GATTATGGAG---------------------GAGGGAAAGAGGT-----------GGATAGCAGTTCCCACATGGAGGATACCGGAGAGGCTAGAGAGGTGGCATAG------------------------------------------------ SIVmnd1_Mandrill --------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAGGGTATG--------------GCCCTTGGGGTCC----------CTCCAAACC----------GGGGAATTATCCGGCA-----------------------------------------------------------------CAAGAGGTGACTCCAACAGCTCCACCATTAGAGG------------------------------------------------------------------------AGAAACCTCTGCAGAAAACTCTGAGCACTTATCAGAAATTAGGGAGAG-----------------------------------------------GGCTCAGGCAGAAGATGAAGGAG------------------------------------GAGAAGAGAGAGGAGGATTTTCATTCC--CTGAG------------------TACTCTCTTTCAAGAAGACCAATAGAAGAGGTCTCAGTGGATGGTGTCACTATAAGAGCTCTACTAGATACAGGAGCTGATGATACCATCTTTAATGAAAGAAATATAAAATT----------A---AAAGGAAATTGGCAGCCAAAAATTATAGGGGGAATAGGTGGAAACTTAAGAGTA-AAACAGTATGATAATGTATATGTAGAAAT---------------AAGAGGGAAGGGAACATTTGGGACAGTATTGATA---GGACCTACTC------------------------CAATAGATATAATAGGGAGAAACATAATGGAAAAATTAGGAGGAAAATTAAT------ATTGGCACAATTGTCTGATA---AAATACCAATAACAAAAGTGAAATTAAAACCAGGAGTAGATGGACCCAGAATAAAACAAT-GGCCTTTAAGTAAAGAGAAAATAGTTGGTCTTCAGAAAATATGTGATAGATTAGAGGAGGAAGGAAAAATTAGTAGGGTAGATCCAGGAAATAATTACAATACACCTATCTTTGCCATAAAGAAGAAGGATAAAAATGAATGGAGAAAATTAATAGACTTTAGAGAATTAAACAAGTTAACACAGGATTTTCATGAATTACAGTTAGGTATACCTCACCCAGCAGGAATAAAAAAGTGTAAAAGAATAACAGTCCTAGATATAGGGGATGCCTATTTTAGTATACCTCTGGATCCAGATTATAGACCCTATACTGCCTTTACGGTACCATCAGTTAATAATCAAGCACCAGGAAAAAGATACATGTATAATGTTCTTCCTCAAGGGTGGAAGGGAAGTCCATGTATCTTTCAAGGGACAGTAGCATCACTGCTGGAGGTATTTAGAAAGAACCATCCA---ACAGTACAGTTATATCAATACATGGATGATTTGTTTGTAGGGTCAGACTATACAGCAGAAGAGCATGAGAAAGCTATAGTAGAATTAAGGGCTTTATTAATGACATGGAACTTAGAAACACCTGAAAAGAAATATCAGAA---------AGAACCTCCCTTTCATTGGATGGGGTATGAGTTACACCCAGATAAGTGGAAGATAGAAAAGGTTCAACTA------CCAGAATTAGC---AGAACAGCCAACAGTAAATGAAATACAGAAATTGGTAGGTAAATTAAATTGGGCTGCACAGTTATATCCTGGGATCAAAAC---------AAAACAACTGTGCAAGCTAATAAGAGGAGGACTAAACATAACAGAGAAAGTCACAATGACAGAAGAAGCAAGACTGGAATATGAACAAAATAAAGAGATCTTGGCTGAAGAACAAGAAGGGTCTTATTATGATCCTAATAAGGAATTATATGTAAGATTTCAGAAAACAACAGGAGGAGATATATCATTTCAATGGAAGCAAGGAAATA------------AGG------TTTTAAGAGCAGGGAAATATGGGAAACAGAAAACAGCACATAGTAATGACCTCATGAAATTGGCAGGTGCTACGCAGAAGGTAGGAAGAGAAAGTATAGTAATCTGGGGTTTTGTACC-----------------AAAAATGCAGATACCCA--------------CTACAAGGGAGATATGGGAAGATTGGTGGCATGAGTATTGGCAGTGTA------CATGGATACCAGAAGTAGAATTTATCAGCACACCTATGTTAGA--------AAGGGAATGGTATAGCTTGTC------------------CCCAGAACCTCTAGA------GGGGGTAGAAACATATTATGTTGATGGAGCAGCTAACAGGGACAGTAAAATGGGAAAAGCAGGATATATTACAGATAGAGGTTTTCAAAGGGTAGAAGAATATCTAAATACCACCAATCAGCAGACAGAATTACATGCAGTAAAACTAGCTCTAGAAG---ATAGTGGAAGTTATGTTAACATAGTAACAGATTCACAATATGT------------------AGTAGGTATACTAGCAAGCAGACCTACT-------GAAACAGATCACCCCATAGTAAAGGAAATAATAGAATTAATGAAAGGAAAAGAAAAAATTTATTTAAGTTGGCTACCAGCACACAAAGGG---ATAGGAGGGAATGAGCAAATAGATAAGCTAGT--------------------AAGTTCA-------------------------------------------------------------------------------------------------------------------GGAATCAGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGT----------------------CTTATTCCTACAAAATATAGAACCAGCACAG-GAAGAACATGA-GAAATATCATAGCAATGAAGCACAATTAAGAGAGAAATTCCACTTACCAGCTCTAGTAGCCAAACAGATTGTGCAAAGTTGCAGTAAGTGCTGTCATC------------ATGGAGAG------CCCATAAAGGGACAGACAGATGCTTCACTT------------GGAGTCTGGCAGATAGATTGCACACATCTGGAAAAT------------CAAATTATTATAGTAGCAGTGCATGTAGCTTCAGGCTTCATGAAGGCAGAAGTTATAACAGCAGAAACTGGAAAAAAG---ACAGCAGAGTTTCTGTTAAAGTTAGCAGCAC---AATGGCCTATTAGTAAACTACACACAGATAATGGGCCTAACTTTACTAGTCAGGAAGTAGAAACCATGTGTTGGTGGTTAGGGATAGAACACACATTTGGAATACCCTATAACCCACAAAGTCAGGGGGTAGTGGAAAATAAAAATAAGTATCTAAAAGAATTGATTGAGAAAATAAGAGAAGATTGCAAAGAATTAAAAACAGCAGTAGCCATG---------------GCCACATTCATTCATAATTTTAAACAAAGGGGAGGACTAGGGGGGATGACAGCAGGAGAGAGAATAGTAAATATGATCAATACAGAATTAGAATATCAATATCAACAAA---ATCAAATTTCAAAAAAT---TTAAATTTTAAGGTTTACTTC---------AGAGAAGGAAGAGATCA-----GCTGTGGAAAGGACCTGGTATCCTTTTGTGGAAAGGAGAAGGGG-CAGTAGTTTTAAAA------TATCAAGAAGAGATAAAGATAGTACCTAGAAGAAAGTGTAAAATAATAAAA------GATTATGGAG---------------------AGAGTGGAAA--------------GAATAGTCAGGTTAACTTGGAAAGTGTCTAG--------------------------------------------------------------------- SIVmnd2_Mandrill --------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAGGGAATG--------------CTCCCTGGGGCAG----------TGGCAAGCC----------CAGGAACTTTCCTG---------------------------------------------------CCATGCCA--------------CTGACCCCATCAGCACCCCCGATGCCAGGG------------------------------------------------------------------ATGGAGGATCCAGCAGAGAAGATGTTATTAGACTATATGAGAAAGGGGCAAC---------------AACAGAGGG--------------CAGCAAAGGAGACCAAGCAGGAGAAGGACAAG------------------------------------GGTCCCTACGAGGCAGCTTACAACTCC--CTCAG------------------TTCTCTCTTTGGAACAGACCAACTACAGTAGTAGAAATAGAGGGACAAAAGGTAGAAGCCCTACTGGACACTGGAGCAGATGATACAGTAATCA------AAGATGTAGATTT----------A---ACAGGAAATTGGAAACCCCAAATTATAGGAGGAATTGGAGGAGCAATTAGGGTG-AAACAGTATTTCAATTGTAAAATAACAGT---------------AGCAGGAAAAAGTACTCATGCTTCAGTGCTAGTG---GGCCCTACCC------------------------CTGTAAATATTATAGGTAGAAATGTTCTTAAGAAGTTAGGATGTACTCTGAA------TTTTCCTA------TTAGTA---AGATAGAGACAGTAAAAGTAACACTAAAACCAGGAATGGATGGACCAAGAATTAAACAGT-GGCCACTGTCTAAAGAAAAGATTTTAGCCTTACAGACAATATGTGATGAAATGGAAAAGGAAGGCAAAATCTCTAGAATAGGTCCAGAAAATCCATATAATACACCAGTATTTTGTATAAAAAAGAAAGATGGAACCAGCTGGAGAAAATTAGTAGATTTTAGGCAATTAAATAGAGTGACTCAGGATTTCTTTGAGGTGCAGCTAGGAATCCCACATCCGGGAGGCTTAAAACAATGTGAACAAATCACAATATTGGATATAGGAGATGCCTATTTTTCATGTCCTTTGGATGAGAGCTTTAGAAAGTACACTGCATTTACCATTCCATCGGTAAATAATCAAGGCCCAGGAATCAGGTACCAGTATAATGTTCTTCCACAGGGATGGAAAGGCTCTCCGGCAATATTTCAAGCAACGGCAGACAAAATTCTAAAAACATTCAAAGAGGAATACCCA---GAAGTATTAATTTATCAATACATGGATGATCTGTTTGTGGGAAGTGATCTGAGTGCGTCAGAGCACAACAAAATGGTAAATAGGTTGAGGGAACATTTAAGGTTCTGGGGGCTCGAGACCCCAGACAAAAAGTTCCAAAA---------AGAACCTCCTTTTGAGTGGATGGGGTATGTGCTGCACCCACAGAAATGGACAGTCCAAAAGATACAGCTG------CCAGAAAA------AGAGACATGGACAGTAAATGATATTCAGAAACTGGTAGGAAAACTCAATTGGGCAAGTCAAATCTATTCCGGAATTAAAAC---------AAAAGAGCTCTGCAAATTGATCAGAGGGGCAAAACCTCTAGATGAAGTAGTAGAATGGACTAGGGAAGCAGAATTAGAATATGAAGAAAATAAGTTAATAGTGCAGGAGGAAGTACATGGAGTTTATTATCAGCCAGGAAAACCTCTGATGGCCAAGGTACAGAAACTGACACAGGGACAATGGAGCTATCAGATAGAACAGGAAGAGAA---------TAAGC------CTCTTAAGGTAGGGAAGTATGCTAGGACAAAACATGCCCACACAAATGAGTTAAGGGTGCTTGCAGGATTAGTACAAAAAATAGCCAAAGAGTGCATAGTGATTTGGGGAGAATTGCC-----------------AAAATTCTATCTCCCCC--------------TGGAGAGGGAAGTATGGGATCAGTGGTGGCATGATTATTGGCAGGCAA------CATGGATCCCAGAATGGGAATTCATCTCAACACCACCACTAAT--------AAGGTTGTGGTATAACCTGTT------------------AAAAGAACCAATACC------AGGGGAGGATGTCTATTATGTGGATGGGGCAGCAAATAGAAACTCTAAGGAAGGGAAAGCAGGATACTATACAGCTAGGGGAAAAAGTAAAGTAATAGCCTTAGAAAACACAACTAATCAGAAAGCAGAATTAGAGGCAATACTGTTAGCCTTGAAAG---ATTCAGGTCCTAGGGCAAATATAGTCACAGACTCACAATATGC------------------ATTAGGCATACTTTCAGCCACTCCAGAT-------CGATCAGACAACCCTATAGTTAGAGAAATAATCAACCAAATGATAGCCAAAGAAGCTGTATACTTAGCATGGGTACCAGCTCATAAAGGC---ATAGGAGGCAATGAACAAATAGACAAATTAGT--------------------AAGCAAA-------------------------------------------------------------------------------------------------------------------GGAATCAGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGT----------------------ACTATTCCTGGAAGGAATAGATAAAGCTCAG-GAGGAACATGA-CAAATACCATAATAATTGGAGATCATTAAGTCAGGAATTTAGCATACCCCCTATAGTGGCAAAAGAAATAGTTGCACAGTGCCCAAAGTGTCAGGTAA------------AAGGAGAA------CCTATCCATGGACAGGTGGATGCGGCCCCA------------GGAACATGGCAAATGGATTGCACCCATCTAGAAGGA------------AAGGTTATCATAGTAGCAGTCCATGTGGCCAGTGGATATCTAGAAGCAGAAGTGATACCAGCAGAAACAGGAAAAGAA---ACAGCACATTTCCTGCTAAAACTAGCAGGAA---GATGGCCAGTGAAACATTTACATACTGACAATGGTCCAAACTTTGTCAGTGAGAAGGTAGCCACAGTGTGTTGGTGGGCTCAGATAGAGCACACCACAGGAATACCCTATAACCCCCAAAGTCAAGGAGTTGTGGAAGCAAAAAATCATCATCTTAAGGTAATTATAGAGCAAGTTAGGGATCAAGCAGAGAGACTGGAGACAGCAGTACAAATG---------------GCAGTACTCATTCACAATTTTAAAAGAAAAGGGGGGATAGGGGAGTACAGTCCAGGAGAAAGAATAGTGGATATAATAACAACAGATATTCTAACTACCAAATTACAAC---AAAATATTTCAAAAATT---CAAAATTTTCGGGTTTATTAC---------AGAGAAGGAAGGGAGCA-----GCTCTGGAAAGGACCAGCAGAACTCATTTGGAAAGGAGAAGGAG-CAGTGGTAATCAAA------GAAGGAACAGACTTAAAAGTTGTGCCCAGAAGAAAAGCTAAAATAATCAGG------GATTATG---------------------------GAAAAACAGT-----------GGATAGTAATCCCCACATGGAGGATAGACAGGAGACAGCTTGA--------------------------------------------------------- SIVmon_Mona_Monkey ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTATTGGACACGGG{AG}GCGGACGATACCATCGTCCAAGA{AG}CAAGACATAAATCT----------A---GGAGAAAATTGGACACCCAAAATGGTAGGGGGAATAGGAGGCTTAATACAGGTT-AAGCAATTCAAAGGGGTAACGGTATCCTT---------------CCAGGGTAAAACAGTGAGAGC{AT}ACAGTTTTGCTG---GGACC{AG}ACCC------------------------CAATTAATATTTTGGGGAGAAACGTCCTCTCAAGGATGGGGATAACCCTGAA------CATG{CT}CCCAGGGAATCGCCC---AATCCCCATCCTTGACAGTGACCCTTAAACCAGGAAAAGATGGGCCAAAATTGAAACAAT-GGCCCCTCTCTAAAGAAAAGATAGAGGCTCTCACCACCATT{AG}CCCGGGAGATGATAGAATTAGGCCAATTGGAAGAAGCAGAGCCAACCAATCCATATAATTCTCCTTGCTTCGCGATAAGGAAAAAGGATAAAACCAAATGGAGGATGCTCATAGATTTCAGGGAATTAAACAAAGCAACACAAGATTTCTTTGAGGTACAATTAGGAATTCCACACCCGGCTGGACTCCAGAACATGGCAAATATAACTATAGTGGACATGAAAGATGCCTTTTACAGCATCCCTCTGGATGAAAATTTTAGGAAATATACTGCATTTTCAATACCTTCAGTAAATAATGCAGAACCAGCCGTGAGATATCAGTTCAGAGTGTTGCCCCAGGG{AG}TGGAAAGGATCCCCAACAATATTTCAGTACTCAGCATCAGAGCTGCT{AG}AAAG{AG}AATCAGGAGAAAATATCCA---GAGGTCACCCTCATCCAGTACATGGATGATCTACTCATAGGTTCAGACCATTCCCTACCTGAACACAGGAAGATAGTAACAGCCATTAGAACGCT{AG}CTATCAGAAAAGGGGATTCAAACACCAATAGAGAAATATCAGGA---------CAAGTACCCATTGCAGTGGTTGGGGTATGAACTCCACCCCACCCATTGGACAGTCCAAAAGATAGAACTG------CCAGAACA------AGACCAGTGGACAGTCAATGGGATCCAAAAATTAGTAGGGAAATTAAACTGGGCAGCGCAGATCTACCCAGGAATCAAGAC---------AAAGCATCTATGCA{AG}ATGTATCCG{AG}GGG{AG}TAAAAGCCCTAACGGACATAGTGGAGCTATCAGACTTAGCCCAAGCAGAATTAGCAGAAAATAGGGAAATTCTAAGTCAACAGTCGACTGGGGGATATTACGACCCCCAGCTCGACTTGAAGGTAGAGATTACCTCCCTGG{CT}AGAAGGACAGTGGGGGTAC{AG}GGTATTTCCAGGAA{AG}ATA------------GGG------TTCTAAAGACAGGCAAATTCGCAAAGATTAAAAATGCCCACTCCAACACATACCAGCAATTGGCAGATGCTGTAACCAAACTAGGGAAGGAGGCCTTGGTCATTTGGGGAAAGCTACC-----------------AATATTTAGATTACCAG--------------TAAACAAAGAACAGTGGGACACATGGTGGGCCGACAATTGGCAAGTCA------CTTGGATACCAGAGATAGAGCCAGTACACTCTCCACACCTGCT--------TAGACAATGGTACACCTTAGT------------------GCAA{AG}ATCCCATTGA------ACACGCTCCCACCTACTATGTAGATGGGGCGGCTAACAGAGCATCAAAAGAAGGGAAGGCAGGATATGTCACCAGTACAGGCCAAAGAAAGGTAATTCCATTAGAGCAGACTACCAACCAGAAGGCTGAACTAGAAGCAGTGCTTTTAGCATTGCAAA---ATGGGCCCGCTAGTATGAATATAGTAACAGACTCACAGTATGT------------------CATGGGAATCCTAGCATCAAAGCCAGAG-------GTCTCGGAGTCCCCAATAGTAGAGAAAATCATCCAGCAGCTCCTAGGAAAAAAGCAGGTATATTTGTCATGGGTCCCGGCCCACAAAGGC---ATAGGGGGAAATGAAGAAGT{AG}GACAAATTAGT--------------------AAG{CT}CAA-------------------------------------------------------------------------------------------------------------------GGGATCAGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGT----------------------CCTCTTCATGGAGAACATTGAACC{AG}GCCCGA-GAGGATCATGA-AAAATATCACAGCAATTGGAAATATCTCAGGGATACTTATGGCATTCCAACACTCCTAGCCAAAGAGATAGTCAACCATTGCCCCAAGTGTCACACAC------------AAGGAGAA------CCCAAACATGGACAGGTAGA{CT}TCAGATATA------------GGGATATGGCAAATGGATTGCACTCATTATGAAGGA------------AGTATCATCCTAGTAGCCGTTCATGTAGCTAGTGGCTACGTTTGGGCCAAAATTCTTCCCAGAGAAACAGGGAAAGAA---ACAGGCATTGCCCTGTTGGAACTTGCAGCGA---CATGGCCAATACATCATGTACACACTGACAATGGACCAAATTTCACCAGTCAGGAATTTGCAGC{CT}GCTGCATGGTGGGCAAACATAGAACACAGTACTGGAGTGCCCTACAACCCACAAAGTCAAGGTGTAGTAGAAAACATGAATAAGCAAATCAAAACCACATTAGGGAAAATCAGGGATGAAGTTCAGTTCCTCTCTACAGCACTGGCACAA---------------ACGCTCTACATTCTAAATTTTAAAAGAA{AG}GGGAGGAATAGGGGATATCAGTCCAATAGAGAGGTTAGTCAACATGATTCATACAGATTTAGAACTACAACACTCAAACA---ACCAAATTACAAAATTT---TCGAAATTTCGGGTTTATTTC---------AGAACAGGCGCTGATCC-----TTCGTGGAAGGGACCAGCACATCTTCTCTGGAAGGGGGAAGGAG-CTTTGGTGATTAAGAC---AGATCAAGGTGAGGTAATAACAGTACCACGCAGGAAGGCAAAGATCATTCGC------CCTTATGGCT---------------------CCAAGGAAGATGT-----------GGGTAGTAAGCCCAGTGCACATCAGATCAGAGAGGTGGATGGAATGGCTGAT---------------------------TAG------------------ SIVmus_Moustached_Guenon --------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAGGGGATCCCTTCG--------GCCTCCAGAA-------------AAGGAGGCC----------GAGGAACTTCCCCC---------------------------------------------------AGACCTCT--------------CTCTTGCCAACTGCTCCGCCAGAACAGGAG---------------------------------------------------------------------------------GGGGAATTGGTCAATCTCTCTCCAGCAGTGGGTCCCG-----------------------------------------------------------GGGAGGGGAAA------------------------------------CAGGACAGGAAGAGTCTCTATCCTTCC--CTGTC------------------ATCCCTCTTTCAGGACGACCAGTCAGACCAGTAGAGATAGAAGGGCAGGTGGTGTCAATGCTGCTCGACACCGGAGCAGATGACACCATAATCCAGGATGCCCATATACACCT----------A---GAAGGACCATGGAATCCCAAATCAGTAGGGGGAATAGGGGGAAACATATCAGTC-AAAGAATATAGGGGAGTACAGGTTTGTTT---------------CAATGGAAAAACTATTAGGGCAACAGTATTAGTA---GGGCCAACAC------------------------CTATAAATATAATGGGGAGAAACTGTTTAAGCAAATTTGGCATTACTCTAAA------CATGATAC------AGGGAA---AATTAGAACCAATAAAAGTGACCCTAAAAGAAGGAGCAAAAGGGCCAATGGTCAAGCAAT-GGCCTTTGACCCAGGAAAAGATCAGGGCCTTGGAGGACATAACCCAGCAGATGCTAAAAGTAGGCCAAATAGAGGAAATAGGACCAGAGAATCCTTATAATTCTCCATGCTTTGCAATTAGGAAAAAGGACAAATCTAAGTGGAGAATGCTAATAGATTTCAGGCAATTAAATGAGGCTACCCAAGAACTCGCAGAAGTTCAACTAGGAATCCCACATCCAGCAGGATTAATAGAGCATGAGCACGTTACAATAGTGGATATCAAGGACGCCTTTTACAGTGTCCCCCTAGATCCAGACTTTAGGAAGTACACAGCCTTTTCGCTGCCTCAGGTAAACAACTTGGGACCAGCAAGAAGATATCAATTCAAAGTGCTACCACAGGGCTGGAAAGGGTCTCCTACCATCTTCCAGTTCACAGCAGCCAAACTCTTAGAAGAGATTAAGAAAGCAAACCCA---GATGTCACTCTCATCCAATACATGGATGACCTCCTGATAGGATCCAACAGAGAATTATCAAGCCACAGGAAAGTAGTAGCACAGATTAGAAACATGCTCTTAAAGCTTGGGATTCAAACCCCTCAAGAAAAATTTCAGGA---------AGACTACCCAGTCCAATGGTTAGGGTATGAGCTACACCCCCGGGGCTGGAAAATACAGCCCGTAGCATTG------CCACAACA------AGAAGTTTGGACAGTTAATGATGTGCAAAAGCTGGTAGGGAAATTAAATTGGGCAGCACAAGCATACCCAGGTATCAAGAC---------AAAGCAATTATGCAAATGCATCAGGGGAGTAAAATCTCTGACTGAAGAGGTCCAGTTGACAGAGGAAGCACAGGCAGAATTGGCAGAAAATCAGGAGATCCTTCAACAGACAGTCCAGGGGGCATACTATGACCCAGAACAGCCATTAGTGGCAGAAATTGTCTCACTAGGAGACTCACAGTGGGGATATAACTTCACCCAGAGCAAGG------------GGG------TATTAAGGACAGGAAAATTTGCCAAAGTAAGGTCAGTACACACTAATAGCTATCAGCAATTGGCAGACGCAATGGCCAAAATAGGAAGAGAAAGCCTAGTCATTTGGGGGAAGCCCCC--------------TGACAAGGTCAGAATCCCAG--------------TGATCAAAGAACAGTGGGACCAGTGGTGGATAGCACACTGGCAGGTCT------CGTGGATACCTACCATAGAAGCAGTGCATACCACCCACCTGTT--------AAAACAGTGGTTCACATTGGT------------------ACCAGAACCATTAAA------AGAAGCTCCCACATATTATGTGGATGGAGCAGCAAATAGGGTATCCAAATTGGGAAAAGCAGGATACGTCACAAACACAGGGAAAGAAAAGGTAATTAGCCTAGAAAGTACTACCAACCAGAAAGCAGAATTGGAGGCAGTCTTATTGGCCTTAAAAG---AAGGGCCTCCTAGGATGAATTTAGTCACAGATTCTCAGTATGT------------------CTTAGGGATAGTAGCTTCTCAGCCACAA-------GAATCCACTTCACCATTAGTAGAGCAAATAATACAGGAGCTACTGTCAAAAGAAGCCATATACTTATCATGGGTGCCAGCCCATAAGGGT---ATAGGAGGAAATGAGGAAGTGGACAAATTAGT--------------------AAATAGT-------------------------------------------------------------------------------------------------------------------GGAATCAGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGT----------------------CCTATTCATGGAACAGATAGAACCTGCAAAG-GAAGATCATGA-AAAATATCACAGTAATTGGAAGTACCTCAGGGATAAATACCAAATCCCAGCTTTGTTAGCCAAAGAAATAGTAAACCATTGTCCAAAATGCCAGACAC------------ATGGAGAA------CCAAAAACAGGGCAAGTCAATGCAGAGATA------------GGGGTATGGCAAATGGATTGCACCCACCTGGAGGGA------------AAAATCATTCTAGTAGCAGTCCATGTGGCTAGTGGGTACATGTGGGCAAAGATATTGCCAAGAGAAACAGGGAGGCAG---ACAGCTTTAGGCCTACTGGAGTTAGCATCAC---TATGGCCTGCGACACAAATCCATACAGATAATGGGGCTAACTTCATCAGTGCAGAATTCGAAGCAGCATGCTGGTGGGCCAGCATAGAACATACCACAGGGGTACCATATAACCCTCAGAGTCAAGGAGTGGTAGAAAACAAAAACAAACAGTTAAAAGAAGCCATACACAAAATCAGGGAAGAGGTCACTTATTTGGAAACAGCAGTAGCACAA---------------GCAGTCTTCATTTTAAATTTTAAAAAGAAGGGAGGAGTGGGGGACCTATCAAATGCTGAGAGGATAATCAACATGCTACACACAGAACTAGAACTACAACACTTACAAC---AACAAAAATACAAATTT---CAAAATTTTCGGGTTTATTAT---------AGGACAGGTTCTGATCC-----GTCTTGGAAGGGACCCGCCGTCTTACTGTGGAGAGGTGAAGGAG-CAGTAGTCATCAAAAC---AGACTCAGGAGAGGTAATCACAGTTCCTAGAAGAAAGGCAAAAATAATCAAA------CCCTATGGCG---------------------CCAAGGAAGATGT-----------GGGTAGTAAGTCCGATACAGGAGACCTCAGAAAGGAAGATAGATTGGATAAT---------------------------TAG------------------ SIVnme_Pig_Tailed_Macaque -----------------------GTGTTGGAATTGTGGGAAAGAGGGACACTCTGCAAGGCAATGCAGAACCCCAAGAAGACAGGGCTGCTGGAAATGTGGACAAATGGGCCATGTTATGGCCAAATGCCCAGACAGACAGGCAGGTTTTTTAGGCTTTG--------------GCCCATGGGG-------------AAAGAAGCC----------CCGCAATTTCCCCA---------------------------------------------------TGGCCCAA-ATGCAT-CAGGGGCTGACGCCAACTGCTCCCCCAG------------------------------------------------------------------------------AGGACCCAGCTGTGGATCTGCTAAAAAACTACATGCAGTTGGGCAAAC---------------AGCAGAGAG-----------AAAGCAAAAGGAAGCCTTACAAGGAGGTG---------------------------------------------------ACAGAGGATTTGCTGCAC--CTCAA------------------TTCTCTCTTTGGAGAAGACCAGTAGTCACTGCTCATATTGAGGGACAGCCTGCAGAAGTATTATTAGATACAGGGGCTGATGATTCTATTGTAG------CAGGAATAGAGTT----------A---GGTCCACATTATACCCCAAAAATAGTAGGAGGAATAGGAGGTTTTATTAATACT-AAAGAATACAAAAATGTAAAAATAGAAGT---------------TTTAGGCAAAAGGATTAAAGGGACAATCATGACA---GGGGACACCC------------------------CGATTAACATTTTTGGTAGAAATTTGCTAACAGCTCTGGAGATGTCTCTAAA------TTTCCCCA------TAGCTA---AGGTAGAGCCTGTAAAAGTCACCTTAAAGCCAGGAAAAGATGGACCAAAATTGAGGCAGT-GGCCATTATCAAAAGAAAAGATAGTTGCATTAAGAGAAATCTGTGAAAAGATGGAAAAGGATGGTCAGTTGGAGGAAGCTCCCCCGACCAATCCATACAACACCCCCACATTTGCCATAAAGAAAAAGGACAAGAACAAATGGAGAATACTGATAGATTTTAGGGAACTAAATAAGGTCACTCAGGACTTTACAGAAGTCCAATTGGGAATACCACACCCTGCAGGACTAGCAAAAAGGAAGAGGATCACAGTACTGGATGTAGGTGACGCATATTTCTCCATACCTCTAGATGAAGAATTTAGGCAGTACACTGCTTTTACTTTACCATCAGTAAATAATGCAGAACCAGGAAAACGATACATTTATAAGGTTCTGCCTCAGGGGTGGAAGGGGTCACCAGCCATCTTCCAACACACTATGAGAAATGTGCTGGAACCCTTCAGGAAGGCAAATCCA---GATGTGACCTTAGTCCAGTATATGGATGACATCTTAGTAGCTAGTGACAGGACAGACCTGGAACATGACAGGGTAGTTTTACAGTTAAAGGAACTCTTAAATAGCATAGGGTTTTCTACCCCAGAAGAGAAGTTCCAAAA---------AGATCCCCCATTTCAATGGATGGGGTATGAATTGTGGCCAACAAAATGGAAGTTGCAAAAGATAGAGTTG------CCACAAAA------AGAGACCTGGACAGTGAATGATATACAGAAGTTAGTAGGAGTATTAAATTGGGCAGCTCAAATTTATCCAGGTATAAAAAC---------CAAACATCTCTGTAGGTTAATTAGAGGAAAAATGACTCTAACAGAGGAAGTTCAGTGGACTGAGATGGCAGAGGCAGAATATGAGGAAAATAAAATAATTCTCAGTCAGGAACAAGAAGGATGTTATTACCAAGAAGGCAAGCCATTAGAGGCCACGGTAATAAAGAATCAGGACAATCAGTGGTCTTATAAGATTCACCAAGAAGACA------------AAA------TACTAAAAGTAGGAAAATTTGCAAAGATAAAAAATACACATACCAATGGAGTTAGACTATTAGCACATGTAATACAGAAAATAGGAAAGGAAGCAATAGTGATCTGGGGACAGGTCCC-----------------AAAATTCCACTTACCAG--------------TTGAGAAAGATGTATGGGAACAGTGGTGGACAGACTATTGGCAGGTAA------CCTGGATACCGAAATGGGATTTTATCTCAACACCACCACTAGT--------AAGATTAGTCTTCAATCTGGT------------------AAAGGACCCTATAAA------GGGAGAAGAAACCTATTATGTAGATGGATCATGTAATAAACAGTCAAAAGAAGGGAAAGCAGGATATATCACAGATAGGGGCAAAGACAAAGTAAAAGTCTTAGAACAGACTACTAATCAACAAGCAGAATTGGAAGCATTTCTCATGGCATTGGCAG---ACTCAGGGCCAAAGGCAAATATTATAGTAGATTCACAATATGT------------------TATGGGAATAATAACAGGATGCCCTACA-------GAATCAGAGAGCAGGCTAGTTAACCAAATAATAGAAGAAATGATTAAAAAGACAGAAATTTATGTAGCATGGGTGCCAGCACACAAAGGT---ATAGGAGGAAACCAAGAAATAGACCACCTAGT--------------------TAGTCAA-------------------------------------------------------------------------------------------------------------------GGGATTAGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGT----------------------TCTCTTCTTGGAAAAGATAGAGCCAGCACAA-GAAGAACATGA-TAAATACCATAGTAATGTAAAAGAATTGGTATTCAAATTTGGATTACCCAGACTAGTGGCCAAACAGATAGTAGACACATGTGATAAATGTCATCAGA------------AAGGAGAA------GCTATACATGGGCAGGTAAATTCAGATCTA------------GGGACTTGGCAAATGGATTGTACCCATCTAGAGGGA------------AAAATAATCATAGTTGCAGTACATGTAGCTAGTGGATTCATAGAAGCAGAAGTAATTCCACAAGAGACAGGAAGACAG---ACAGCACTATTTCTGTTAAAATTGGCAAGCA---GATGGCCTATTACGCATCTACACACAGATAATGGTGCCAACTTTGCTTCGCAAGAAGTAAAGATGGTTGCATGGTGGGCAGGGATAGAGCACACCTTTGGGGTACCATACAATCCACAGAGTCAGGGAGTAGTGGAAGCAATGAATCACCATCTAAAAAATCAAATAGATAGAATCAGGGAACAAGCAAATTCAATGGAAACCATAGTATTAATG---------------GCAGTTCATTGCATGAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACTCCAGCAGAAAGATTACTTAACATGATCACTACAGAACAAGAAATACAATTCCAACAAT---CAAAAAACTCAAAATTT---AAAAATTTTCGGGTCTATTAC---------AGAGAAGGCAGAGATCA-----GCTGTGGAAAGGACCTGGTGAGCTATTGTGGAAAGGGGAAGGAG-CAGTCGTCTTAAAG------GTAGGGACAGACATTAAGGTAGTACCCAGAAGAAAGGCTAAGATTATCAAA------GATTATGGAG---------------------GAGGAAAAGAGGT-----------GGATAGCAGTTCCCACATGGAGGATACCGGAGAGGCTAGAGAGGTGGCATAG------------------------------------------------ SIVolc_Olive_Colobus --------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAGGGAAAT--------------------GGAGGGG----------AGGGAAAGC----------AGAGCCTCCCCTCAAC----------------------------------------------------------ATGCAA-CAGAGGACAGAGATGGACATCTTTCCCT---------------------------------------------------------------------------------------CTGCACCTACCCTGGAACAGATTTTGGAGAAGGGAACAA--------------------------------------------------GGGAAAAGAGAGAGATGAAG------------------------------------GAGGAGAAGAAACCTCTTTATCCCTCC--CTAGC------------------ATCTCTCTTTGGAGAAGACCAATGATAGAGCTGTATATAGAAGGACAGCAAGTCACTGCACTGTTAGATACAGGGGCAGATGACACAGTAATTAAGGGGAAGGATATCTACAT----------G---GAAGGTAATGGGATTCCTAGAATTATAGGGGGAATAGGGGGAGCTATTAGGGTA-ATGCAATATAGATGTA---GGATAAGAAT---------------TTTTGAGAAAGAAATACAAGAGGCAGTATTAGTG---GGAGATACAC------------------------CAGTTAATGTGGTAGGAAGGAATGTGTTAGCAGCAGTAGGGATACGTCTGGT------CTGCGCACAGCTTTCAGATA---AGATCCCTATTACTAAGGTAAAATTAAAAGAGGGACACAAGCCTCCACAGATTAAGCAAT-GGCCTTTAAGTAAGGAAAAGATAGAAGCTTTAGAGAAAATATGTGACAGATTGGAAGAAGAAGGTAAGATACAGAAAGCAGAGGCTTCAAATCAATGGAATACCCCAATATTTTGCATAAAAAAGAAGGACAAAAATGAGTATAGAAAGTTGATAGATTTTAGGGCTCTAAATGCAGCCACACAAGATTTCTGGGAGGTACAATTAGGAATACCTCATCCAGCAGGGTTAAAAGAAAGGGAACAGATTACAGTATTAGATATAGGAGATGCTTATTTCTCTATACCGCTAGATCCAGAATATAGAGAATATACAGCATTTACAATTCCATCAGTAAATAATGATAGACCAGGAAGAAGGTATATATATAATGTGTTACCTCAAGGATGGAAGGGGTCACCATGTATCTTCCAGAGTACAGTGGCTCATTTGATGGAGCCTTGGAGGAAGGAAAATCCT---GAGATAGATTTATACCAGTATATGGATGACTTGTATGTGGGATCAGACTTGCCAAGAGCAGAGCATTTAGAGAAAGTAAAACAGCTGAGGGAGCTCTTGAGGAGTTATAACCTAGAAACTCCTCCAAAAAAGTATCAGGA---------GGATCCACCTTATGAGTGGATGGGGTATACATTATACCCTAAGAGATGGAAGATAGCAAGAATAAAGTTG------CCAGAAAA------AGAAGAATGGACAGTCAATGATATACAGAAATTAGTAGGGCAATTAAATTGGGCTTCACAAATCTATTCAGGAATAAAAAC---------GAAAGCTTTATGTAAACTGATTAAGGGACCTAAAGGGTTGCTAGATAAAGTGGAGTGGACAGAAGAGGCAAAGGAAGAATTAGAAGAGAACAGAGAGATTTTAAAGGAAGAACAAGAAGGAGTGATGTATAAAGAGGAGGAGCCTCTCCAGT---GTACTTTATGCTATACAAAGGGAACGGTAGCATATAGAATATGGCAGAAGCATG------------GAA------CCTTAAAGACAGGAAGGTTTCAAAGGAAGATGACTGCTCATACAAATAAGTTTAGACAGATGACAGGAGCCATAGAAAAGATAGGAAAAGAAAGTATAGTGATTTGGGGAAAGTTACC-----------------GATTTTTCAGGTACCTA--------------CTACAAGAAAAGATTGGGAAGCATGGGCATTTGATGATTGGCAAGTAC------ATTGGATACCAGACATAGAGTTTGTATCTAATTCTGAAAATCA--------AAGGACATTCTGGGAGTTAGT------------------GCCAGCACCCAT---------GGAGGTAGAAACCTTCTATGTGGATGGAGCATATAATAGGAAAAGCAAGGAAGGAAAGGCAGGATATGTCAGTTCAGGGGGAAAGCATAAAATAGTACACATACAGGAGAGTAGTAATCAGAAAGCAGAAATAAGAGCTATTATAGAAGCCCTTAGGG---ACTCAAAAAGTGAGGTCAATATTGTAACAGATTCATTGTATGC------------------CATGGGAATAGTGTTAGAGAAACCAGAA-------GTGTCTGAAGAACCCCTCATACAAGAATTAATAAAGGAGTTGGAGAAGAAAGAAAGAATATATATTGGATGGGTTCCAGCACATAAGGGC---TTAGGGGGCAATCAAGAAGTAGATCAATTAGT--------------------CAGTAAA-------------------------------------------------------------------------------------------------------------------GGAATAAGGACTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAGT----------------------GATGTTTTTGGCAGACATAGAGCCAGCACAA-GAGAGCCACAA-TAAGTATCATCAAAATGCACAAAGTTTGCAGCAAGAGTTCCAAATACCACTAATAGTGGCAAAAAGGATAGTAGATGAATGTGAAGAATGTAAAGGGA------------AAGGGGTT------CCTAGGCATGGAATAGTGGCAGTGGGGGTT------------TATAGGTGGCAGATAGACTGCACTCATTTAGAAGGG------------AAGGTGATCTGTTTGGCAGCACATACAGGGTCAGGGTTCCTATATGGAGAAATCCTTAGAGCAGAAGATGGAGAAAAT---ACAGTGAAATTTGTGCTTAGACTAGCTAGTC---AATGGCCTGTAAAAATAATTCACACTGACAATGGGACAAATTTTGTGAATCAGAAGATGCAGGCAGTATGCTGGTGGTTAGGGATTGAGCATGAAACGGGCATTCCGTGGAATCCTCAAAGTCAAGGAATCATAGAAGCAAAAAATAGAGTGTTAAAGGAGATATTAGGGAGAATCAGAGAACAGGCAACACATTTGGAAACAGCATTGGCTATG---------------GCTATCTTCATTCATAATTTTAAAAACAAGGGAGGACAAGGGGGAGGTACAGTGGCAGAGGAATTAGTAAACCAAATATACACAGATACACAAATAGAATACACACAAA---ATAAATTTAAAAAATTT---TCAGGATATCGAGTGTATTAT---------AAAAACAAAGAAGGCC--------AGTGGTGTGGCCCAGCAGAACTCCTGTGGAAAGGAGAAGGAG-CAGTCCTGCTTAAA------GAAGGAGATAAGTATTTCTCTGTGCCTCTGAGGAAAGCAAAAATAGTGAAG------CCTTATGGAGT--------------------------------------------GGATAGCAGTGCCAATGTATAG------------------------------------------------------------------------------ SIVprg_Preuss_Guenon -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGT---ATAGGAGGAAATGCAGACATAGATCAACTAGT--------------------TAGTCAG-------------------------------------------------------------------------------------------------------------------GGTATTAGACAGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAGT----------------------GCTATTCTTAGAAAAAATAGAACCTGCACAA-GAAGAACATGG-AAAATATCACAACAATGCTCAAGATTTGGTGGAAAAGTTTAGAATACCCTTGTTAATAGCTAAACAAATAGTCAATGAATGCCACAAATGCCAGCAGA------------AAGGAGCA------GCTATAACAGGACAAGTCAATACAGAAGTA------------GGTATTTGGCAAATAGATTGTACTCACTTAGAGAAT------------CAGGTCATCATAGTTGCCATCCATGTGGCATCAGGCTACATGGTAGCAGAAGTAATCCCTGATGAAACAGGGAAAGTA---ACAGCAGACTTTATCCTAAAACTTGCAGGAA---GGTGGCCTGTAAGACAAATACATACAGATAATGGGCCAAATTTTATAAGCAAAGAAGTAGAGGCGGTCTGCTGGTGGGCAGGAATAGAGCACACAACAGGGATTCCATACAACCCTCAAAGTCAAGGAGTAGTAGAAGCTAAAAACAAAGTCTTAAAAAATCTTATTAGTAGAGTGAGAGAAGATGCACAACAATTAAAAACAGCAGTCAACATG---------------GCAGTCCTCATTCATAATTTTAAAAGAAAGGGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SIVrcm_Red_Capped_Mangabey --------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAGGGAATG--------------CTCCCTGGAAGCA----------GGGGAAACC----------GAGGAACCTTCCCT---------------------------------------------------TGACTTCC--------------TTGAGACCTACTGCTCCAGGGAGAGAGGAAGGATGG------------------------------------------------------AATCCCCAGTACGATCCAGCAGAAGAGATGCTCAGGAAATACCTAGCATTGGGGAGAC---------------AGCACAAAC-----------AGGAGCAGAGGAAAGAGAACAAGGAGAAAGTGGGG------------------------------------AGAGCCTACGAGGATGCGTTGTCCTCC--CTCAA------------------TTCTCTCTTTGGAAGCGACCTGTAACATGGGTAGAAATAGAGGGGCAAAAGGTGGAGGCCTTATTAGATACAGGAGCAGATGGTACAGTTATAC------AAAATTTAGATTT----------A---GGAGAAAATTGGAAGCCAAAAATTATAGGAGGAATAGGGGGATATATAAATGTT-AAACAATTTAACCATTGTAAAATAACTAT---------------AGCAGGGAAGACTACACATGCTCATGTATTGGTA---GGACCAACAC------------------------CAGTAAATATAATTGGCAGGAATGTGTTGAGCAAATTAGGAGCCTCTCTAAA------TTTTCCAA------TAAGTA---AAGCAGAAACAATAAAGGTAGAATTAAAGCCAGGACAAGATGGGCCTAGAGTAAAACAAT-GGCCTTTGAGTAAAGAGAAAATTGAAGCTTTAACAGAGATTTGTAATGCCATGGAAAAGGAGGGAAAAATTTCTAGAATAGGACCAGAAAATCCTTACAATACTCCAATATTTTGTATCAAAAAGAAAGATTCCACAAAATGGAGAAAGCTAGTAGATTTCAGAGAATTGAATAAAAGAACACAAGATTTCTTTGAGGTACAGCTGGGAATCCCGCATCCAGGAGGATTAAAACAATGCAGGCAAATTACAGTCTTAGATATTGGGGATGCGTATTTTTCATGCCCCCTATATGAGCCATTTAGAAAGTACACTGCTTTCACGATACTAGCTATTAATAATCAAGGACCTGGCATTAGATATCAATATAATGTGTTGCCCCAGGGATGGAAGGGATCTCCAGCTATATTTCAAACAACAGCTAACAAAATTTTAGAACCATTTAGGAAAGAGAATCCA---GATGTAGTCATCTATCAGTATATGGATGATTTGTTTGTAGGGTCAGATAGGACAGCACATGAACATAGTCAGATGATCAAAAGGCTCAGAGAGCATCTGCTGACCTGGGGTTTTGAGACTCCAGATAAGAAATTTCAGGA---------CAAGCCTCCCTTTGAATGGATGGGCTATGTGCTCCATCCAGACAAATGGACAGTACAAGAGATCAAGTTA------CTAGAAAA------AGAAGAATGGACAGTAAATGATATACAGAAATTGGTAGGGAAATTAAATTGGGCAAGTCAGATATATTCAGGAATAAAGAC---------AAAGGAGTTATGCAAACTAATAAGGGGAGTTAAGGCATTGGATGACAAGGTAGAATTTACAAGAGAAGCAGAATTAGAATATGAAGAAAACAAAGCTGTCCTGAAGGAGAAAATACATGGGGTTTATTATAACCCAGAAAAACCATTAATAGCTAAAGTTCAGAAATTAGAAGGAGGGCAATGGAGCTACCAGATAGAGCAGGGAGACTC---------AAAAC------CTCTAAAGACAGGGAAGTATGCAAAACAAAAGACAGCACATACAAATGAAATTAGAATGCTGGCAGGCTTAGTACAGAAAATATGCAAAGAAGCTATAGTAATTTGGGGAAAGCTTCC-----------------AAAATTTGAGCTGCCAA--------------TAGAAAGAGAAGTATGGGAACAGTGGTGGTCGGATTACTGGCAGGTTT------CCTGGATTCCTGAATGGGAATTTGTTAGTACTCCACCACTAAT--------AAGGCTATGGTACAATCTAGT------------------AAAGGATCCTATACC------AGGAGAAGAAGTCTATTATGTAGATGGGGCAGCAAATAGGAATAGTAAGTTGGGAAAGGCAGGATATGTAACAGATAGGGGAAAAGAAAAGGTAAAAGAATTAGAAAATACTACCAATCAAAAAGCAGAGTTAGGAGCAGTATTACTGGCCTTAAAAG---ACTCAGGAAAAAGGGTAAACATAGTAACAGATTCTCGACATGT------------------GTTTGGCATATTAGCAGGAAGTCCAGAC-------ACAAGTGAGAGCCCCCTAGTACAACAGATTATAGAACAAATGATAGGGAAGGAAGAAGTGTACCTCTCCTGGGTACCGGCACATAAAGGC---ATTGGGGGAAATGAGCAGGTAGATAAATTAGT--------------------GAGTCAG-------------------------------------------------------------------------------------------------------------------GGAATTAGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGT----------------------ACTATTCCTAGACGGGATAGGAAAAGCACAG-GAAGAACATGA-AAAATATCATAGCAATTGGAGAGCAATGGCAGAAGAATTTCAAATACCTCAAATAGTAGCAAAAGAAATAGTAGCCCAATGCCCCAAGTGTCAGGTAA------------AAGGAGAA------GCAGTACATGGACAGGTAGATGCTAGTCCA------------GGTACTTGGCAAATGGATTGCACACATCTAGAAGGA------------AAAATCATCATAGTAGCAGTCCATGTAGCCAGTGGATACATAGAAGCAGAAGTAATACCAGCAGAGACAGGAAAAGAG---ACAGCTCATTTCCTGTTAAAATTAGCAGCCA---GATGGCCAGTGAAACATTTACACACAGACAATGGAACAAACTTTACAAGTGCAGCAGTGCAAGCAGACTGTTGGTGGGCTCAAATAGAGCACACCTTTGGAGTACCCTACAATCCTCAAAGCCAAGGAGTGGTAGAATCAATGAATCATCAATTGAAGATAATAATAGGGCAAATTAGAGATCAGGCAGAAAAGTTAGAGACAGCAGTTCAAATG---------------GCAGTGCTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGAGAAAGGATAATAGACATAATAGCATCAGACTTACAAACAACCAAATTACAAA---ACCAAATTTCAAAAATT---CAAAATTTTCGGGTTTATTTC---------AGAGAAGGAAGGGATCA-----GCAGTGGAAGGGACCAGCTAAACTCATCTGGGAAGGAGAAGGGG-CTGTCGTGATCCAG------GATCAAGAGGATCTAAAGGTAGTCCCTAGAAGAAAGTGTAAGATCATAAAA------GATTATGGCA------------------------GAAAAGAGGT-----------GGATAGAGAGACCAATATGGAAGGTAGACAGGAGGAAAGTTGA--------------------------------------------------------- SIVreg_Red_Eared_Guenon -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGGAGGCAACCACGAGGTAGACCAATTAGT--------------------CAGTAAA-------------------------------------------------------------------------------------------------------------------GGAATTAGGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGC----------------------ACTATTTATGGAACAGGTAGAACCAGCTAGG-GAAGATCATGA-TAAGTATCACAGTAATTGGAAATTCCTCAGAGACACCTACCAAATTCCCACCATAATAGCCAAAGAGATTGTGAATCACTGCCCAAAGTGTCACACCC------------AAGGAGAA------CCCAAGAGAGGGCAAGTAAACACAGAATTA------------GGGCTATGGCAAATGGACTGTACTCACCTGGAAGGA------------AAGGTCATCTTAGTGGCCGCTAACCCAGCCAGTGGGTATGTATGGGCAAAAATCCTGAAAAGAGAGACCGGATTAGAG---ACAGCTTTAGGCCTTTTACAATTGGCAGCAA---CATGGCCCGTAGCACATATCCATACAGA{CT}AA{CT}GGGCCCAACTT{CT}GTAAGCAGGGAGTTCCAAGCAGCAGCATGGTGGGCAAACATAGAACACAGCACAGGTATACCCTACAACCCACAAAGCCAGGGAGTAGTAGAAAACATGAACAAATTGCTAAAGAAGACAATCAGTAAAATCAGAGAAGAAGTAGAATACTTAGAGACAGCCTTAGCACAA---------------GCCTGCTTCATTTTGAATTTTAAAACAAAGGGAGGAATAGGGGAGATAACCCCAGTAGAAAGACTAGTTAACATGATACACACAGAACTAGAAATCACACACACACAAA---ACCACATTTCAAAATTT---TCGAAATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SIVsmm_Sooty_Mangabey -----------------------------------------------------------------------------------------------------------------------------ATGCCCCGAAAGACAGGCGGGTTTTTTAGGGCTTG--------------GCCCATGGGG-------------AAAGAAGCC----------CCGCAATTTCCCCA---------------------------------------------------TGGCCCAG-ATGCCT-CAGGGGCTGACACCAACTGCTCC{CT}CCAG------------------------------------------------------------------------------AGGATCCAGCTGTGGATCTACTGAAGAATTACATGAAGGTGGGCAGAA---------------GGCAGAGGG-----------AGAACAGAGAGAGACCTTACAAGGAGGTA---------------------------------------------------ACGGAGGATTTGCTGCAC--CTCAA------------------TTCTCTCTTTGGAGAAGACCAGTAGTCACTGCCTACATTGAAGAACAGCCCATAGAAGTATTATTAGATACAGGGGCTGATGATTCAATTGTAG------CAGGGATAGAATT----------G---GGTCCAAATTATACCCCTAAAATAGTAGGAGGAATAGGAGGCTTCATTAACACC-AAAGAATATAAAGATGTAAAAATAAAAGT---------------ATTAGGCAAAGTAATTAAGGGAACAATTATGACA---GGAGATACCC------------------------CAATTAACATTTTTGGCAGAAATCTGCTAACAGCTATGGGCATGTCTCTAAA------TCTCCCCA------TAGCTA---AGGTGGA{AG}CCTATAAAAGTAACACTAAAACCAGGAAAAGATGGACCAAAATTAAGACAGT-GGCCGCTATCGAAAGAAAAGATAATTGCATTAAGAGAAATCTGTGAAAAAATGGAGAAAGATGGCCAGTTAGAGG{AG}AGCTCCTCCAACCAATCCATATAACACCCCCACATTTGCTATAAAG{AG}AG{AG}AAGACGGAAATAAATGGAGGATGCTAATAGATTTTAGAGAATTAAACAAGGTCACTCAAGATTTTACAGAAGTACAGTTAGGGATACCACACCCT{AG}CAGGACTAGCAAAGAGAAGAAGGATCACAGTGTTGGATGTAGGTGATGCATATTTCTCCATACCTTTAGATGAAGAATTCAGGCAATACACTGCCTTTACCTTACCATCGGTAAACAATGCAGAACCAGGAAAAAGATACATCTATAAGGTATTACCTCAAGGGTGGAAAGGATCACCAGCTATTTTTCA{AG}CATACT{AG}TGAGAAATGTATTAGAACCTTTTAGAAAAGCAAATCCA---GATGTGACCCTGATCCAATACATGGATGACATCTTAATAGCTAGTGATAGAACAGATTTAGAACATGACAGGGTAGTTTTACAATTAAAGGAACTTCTGAACAGTATAGGATTTTCCACCCCAGAAGAGAAGTTCCAAAA---------AGATCCCCCATTCCAGTGGATGGGATATGAATTGTGGCCCACCAAATGGAAACTGCAAAAAATAGAGTTG------CCGCAAAG------AGAAACCTGGACAGTAAATAATATACAAAAATTAGTAGGAGTGCTAAATTGGGCAGCACAAATTTATCCAGGAATAAAGAC---------TAAACATCTTTGCAGATTAATCAGAGGAAAAATGACTTTAACAGAAGAGGTTCAGTGGACTGAGATGGCAGAGGCAGAATATGAAGAAAACAAGATAATTCCCAGTCAAGAACCAGAGGGATGTTACTATCAGGAGGGAAAGCCACTAGAGGCACCAGTAATAAAGAGTCAGGATAATCAATGGTCATATAAAATTCACCAAGAGGACA------------AAA------TACTAAAAGTAGGCAAATTTGCAAAGATTAAAAATACACATACAAATGGAGTCAGCTTATTAGCACATGTAGTGCAGAAAATAGGAAAAGAAGCAATAATAATTTGGGGACAGGTGCC-----------------AAGATTTCATTTGCCAG--------------TAGAGA{AG}AGAAATTTGGGAACAATGGTGGACAGATTATTGGCAAGTAA------CCTGGATACCAGAATGGGACTTTGTGTCAACACCTCCCTTAGT--------CAGACTAGTTTTCAACCTAGT------------------AAAAGAGCCTATACA------GGGAGCAGAAACATTTTATGTAGATAGATCCTGTAATAGGCAGTCAAGAGAAGGAAAAGCAGGCTATGTGACAGATAGAGGCAGAGGCAAGACAAAACTGCTGGAACAGACTACCAATCAACAAGCAGAGTTGGAAGCCTTTTATCTAGCCTTAGCAG---ATTCAGGACCAAAAGCAAATATTATAGTAGATTCCCAATATGT------------------TATGGGCATAGTAGCAGGTCAACCCACT-------GAATCAGAAAGTAGATTAGTAAACCAGATAATAGAGAAAATGATTAAAAAGGAAGCAATTTATGTAGCATGGGTACCTGCACATAAA{AG}{AG}A---ATAGGAGAAAATCAAGAAGTAGATCATCTAGT--------------------TAGTCAA-------------------------------------------------------------------------------------------------------------------GAAATTAGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGT----------------------CCTATTCTTAGAAAAAATAGAACCAGCGCAG-GAAGAGCATGA-AAAATACCATAGCAATGTAAAAAAATTGGTATTCAAATTT{AG}GTTTACCTAGGCTAGTAGCAAAACAAATAGTAGACACATGTGATAAATGCCACCTGA------------AAGGAGAA------GC{CT}ATACATGGGCAAGTAAATGC{AG}G{AG}ACTA------------GGGACTTGGCAAATGGACTGTACACACCTAGAGGGC------------AAAATAATTATAGTTGCAGTACATGTGGGTAGTGGATTCATAGAGGCAGAAGTAATCCCGC{AG}GGAAACAGGAAGACAA---ACAGCACTGTTTCTGCTAAAATTAGCCAGCA---GATGGCCCATCACACATCTGCATACTGATAATGGTGCCAATTTCACATCACAAGAAGTGAAAATGGTTGCTTGGTGGGCAGG{AG}ATTGAACAGACCTTT{AG}GGGTACCTTATAATCCACAGAGCCAA{AG}GGGTAGTGGAAGCGATGAACCATCATCTAAAAACCCAAATAGATAGAATTAGAGAACAGGCAAATTCAATAGAAACTATAGTACTAATG---------------GCAATTCATTGCATCAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACTCCAGCAGAAAGATTAGTCAATATGATTACCACAGAACAAGAAATACAATTCCAACAAT---CAAAAAATTCAAAATTT---AAAAATTTTCGGGTCTATTAC---------AGAGAAGGCAGAGACCA-----GCTGTGGAAAGGACCCGGTGAGCTATTGTGGAAAGGGGAAGGAG-CAGTCATCCTAAAG------GTAGGGACAGAGATCAAGGTAGTACCAAGGAGGAAAGCTAAAATTATCAAA------GACTATGGAG---------------------GAGGAAAAGAATT-----------GGATAGTGGTTCCCACTTGGAGGATACCGGGGAGGCTAGAGAAGTGGCATAG------------------------------------------------ SIVstm_Stump_Tailed_Macaque --------------------------------------------------------------------AGGCCCGAGAAGACAAGGTTGTTGGAAATGTGGACAACAGGGCCATCAGATGGCCAAATGCCCAGAAAGACAGGTGGGTTTTTTAGGCTTTG--------------GCCCATGGGG-------------AAAGAAGCC----------CCACAACTTCCCCA---------------------------------------------------TGGCCCAA-ATACCT-CAGGGGCTGACGCCAACTGCCCCTCCAG------------------------------------------------------------------------------AAGACCCAGCTGCGGATCTGCTGAGAAGTTACATGCAGCTGGGCAAGA---------------AGCAGAGAG-----------AGAGCAGGAAGACACCCTACAAGGAGGTG---------------------------------------------------ACAGAGGATTTGCTGCAC--CTCAA------------------TTCTCTCTTTGGAGAAGACCAGTAGTCACAGCCCATATTGAGGGTCAGCCTGTAGAAGTACTATTGGACACAGGGGCTGACGACTCAATAGTGG------CGGGGATAGAGCT----------A---GGGCTACAATACACCCCAAAGGTAGTAGGTGGAATAGGAGGATTTATAAATACT-AAGGAATTTAAGAATGTAAACATAGAGGT---------------ATTAGGCAAGAAAATAAAAGGAACTATTATGACT---GGAGACACCC------------------------CCATTAACATTTTTGGCAGGAACCTATTGACAGCTTTGGGGATGTCATTAAA------TTTTCCAG------TAGCTA---AAGTAGAACCAGTAAAGGTGACATTAAAACCAGGAAAAGATGGACCAAAAATAAAACAAT-GGCCATTATCAAAAGAAAAGATAGAGGCACTAAAAGAGATCTGTGAAAAAATGGAGAAGGATGGGCAGCTAGAAGAAGCTCCTCCAACAAATCCTTACAATACCCCCACTTTTGCTATAAAGAAAAAGGACAAAAACAAGTGGAGGATGCTGATAGATTTCAGAGAACTAAATAAAGTGACACAAGATTTTACAGAAATTCAGCTAGGTATACCACACCCTGCAGGACTAGCAAAGAGGAGAAGAATCACAGTATTGGATGTAGGGGATGCATATTTTTCCATACCCCTAGATGAGGGCTTTAGGCAGTATACTGCTTTCACCTTACCATCAGTAAACAATGCAGAACCAGGAAAAAGATACATCTACAAGGTTCTGCCACAGGGATGGAAGGGATCACCAGCAATTTTTCAATATACAATGAGAAATATATTAGAGCCATTCAGGAGAGCCAACCCA---GATGTAACTCTGATCCAATACATGGATGATATCTTGATAGCCAGTGACAGAACAGATCTAGAGCATGACAGGGTAGTTTTACAGTTGAAGGAACTCCTAAATAATTTAGGATTTTCCACCCCTGAAGAGAAATTTCAGAA---------GGATCCTCCATTTCAATGGATGGGATATGAGTTATGGCCAACAAAGTGGAAACTGCAAAAAATAGAATTA------CCTCAGAG------AGACGTTTGGACAGTGAATGATATCCAAAAACTGGTAGGGGTCTTAAACTGGGCAGCACAAATTTATCCAGGAATTAAAAC---------TAAACATCTGTGCAAATTAATCAGAGGTAAGATGGCACTGACTGAGGAGGTACAGTGGACAGAAATGGCAGAGGCAGAATATGCAGAAAATAAAATTATTCTCAGTCAGGAGCAGGAAGGGCAATACTACCGAGAAGACAAGCCTCTAGAGGCAACAGTAGTGAAAGATCAGGACAATCAATGGTCCTATAAGATACACCAAGAAGACA------------AAA------TATTGAAAGTAGGCAAGTTTGCAAAAATAAAAAACACACATACAAATGGAGTTAGATTATTGGCACATGTGATTCAGAAGATAGGGAAAGAAGCAATAGTGATCTGGGGACAGATCCC-----------------AAAATTCCACTTGCCAG--------------TAGAGAGAGAGGTCTGGGAACAATGGTGGGCAGATTATTGGCAGGTAA------CATGGATACCAGAATGGGATTTTGTATCCACACCTCCTTTAGT--------AAGATTAGTCTTTAATTTAGT------------------AAAAGAACCCTTGGA------AGGAACAGAAACATTTTATGTGGATGGCTCATGTAACAGGCAATCTAAAGAAGGGAAAGCAGGCTACATAACTGATAGAGGAAAAAACAAAGTAAAAGCTTTAGAACAGACTACTAATCAACAAGCAGAATTAGAAGCATTTGCCATGGCCTTGGCGG---ACTCAGGTCCAAAAGCAAATATTGTGGTAGACTCACAATATGT------------------GATGGGAATCATAACAGGACAGCCCACA-------GAATCGGAGAGCAAGTTAGTAAATCAGATAATAGAAGAAATGATTAAAAAGGAAGCAATTTATGTAGCATGGGTACCAGCACATAAAGGA---ATAGGAGGAAATCAGGAGGTAGATCATTTGGT--------------------AAGTCAG-------------------------------------------------------------------------------------------------------------------GGAATTAGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGT----------------------CCTATTCCTAGAAAAAATAGAACCAGCTCAA-GAAGAGCATGA-AAAATATCATAGCAATGTGAAAGAGCTAGTCTTCAAGTTTGGCATACCAAGGCTAGTAGCAAAGCAAATAGTGGATACATGTGACAAGTGCCACCAGA------------AAGGAGAA------GCTATACATGGGCAAGTAAATGCAGAGTTA------------GGGACTTGGCAGATGGACTGTACACATCTAGAAGGC------------AAGATAATTATAGTAGCAGTACATGTAGCTAGTGGGTTTATAGAGGCAGAAGTAATCCCACAAGAAACAGGGAGACAG---ACAGCATTGTTTCTGTTGAAGTTAGCAAGCA---GATGGCCTGTCACACACCTGCACACGGATAATGGCGCTAACTTCACCTCGCAGGAGGTAAAGATGGTAGCCTGGTGGGCGGGAATAGAACAAACCTTTGGAGTACCTTACAATCCACAGAGCCAAGGAGTAGTGGAAGCCATGAATCATCATTTAAAGACCCAGATAGACAGAATTAGAGATCAAGCAAACACAGTAGAAACTGTAGTACTCATG---------------GCAGTTCACTGCATGAATTTTAAGAAAAGGGGAGGACTAGGGGATATGACCCCAGCAGAAAGATTAGTTAATATGATCACCACAGAACAAGAAATACAATTTCAACAAT---CAAAAAATTCAAAATTC---AAAAATTTTCGGGTCTATTAC---------AGGGAAGGCAGAGATCA-----ACTATGGAAGGGACCCGGTGAGCTATTGTGGAAAGGGGAAGGAG-CAGTCATCGTAAAG------GTAGGGACAGACATTAAAGTAGTACCAAGGAGAAAGGCTAAAATCATCAAA------GATTATGGAG---------------------GAGGAAAAGAGGT-----------GGATAGTGGTTCCCACCTGGAGGATACCAGGGAGGCTGGAGAGGTGGCATAG------------------------------------------------ SIVsun_Sun_Tailed_Monkey ACA-----------------------------------------------------------------------------------------------------------------AGCTCAATGCCCACAAGGAAAACAGGTGAATTTTTTAGGGTATG--------------GCCCCTGGAACAG----------GGGGCCGCC----------AGGGAACTTTCCAGTC--------------------------------------------------------------------------ATGCCTTCTGCTCCGCCTCTAGAGGATCTGACATTGGGGAACAGAATGA---------------------------------------CACCACCCCAGTCAAAGGCAGAGAGAGCTCTGGAGACCTACAGACTGTTAGGACAGG---------------GCCTCAGAG-----------------------------CACAGCAGAAGAGGAAG------------------------------------GAAAGGGGGGAATGTCAGGAGCCATGC--TTGAA------------------TATGCTCTTTCCAGAAGACCCTTAGAGAAGGTCTTCATTAATGGGCAACCTGTGACTGCTTTATTGGACACGGGAGCAGATGACACAATAGTGTCTGAAGATTCTGTGTCCAT----------A---GAAGGTCACTGGAAGCCCAGGGTAGTGGGTGGTATAGGGGGACAAATTAGAGTA-AAAGAATATGCAGATGTCTTTGTAGAAAT---------------TAGGGATAAAACAGCTACAGGAACAGTGTTGGTG---GGGCCAACAC------------------------CAGTAGATATCATAGGGAGAAATATTCTTTCAGCCTTAGGGGGAAGATTAGT------TTTAGCCACTCTTAGTGAAA---AGATCCCAATTACAAAAGTTAAGTTAAAAGAAGGGGCCGCTGGACCAAAAGTGAAACAAT-GGCCCCTGTCAAGGGAGAAAATAGAAGGCCTACAGAAAATTTGTGATAGATTGGAAGCAGAAGGAAAGATTAGCAGGGCAGACCCAGGGAACCCTTATAACACACCAATTTTTGCTATAAAGAAGAAAGACAAAAATGAATGGAGAAAGTTAATAGATTTTAGAGTACTAAATGGTATGACTCAAGACTTTCATGAGTTACAGTTAGGGATTCCTCATCCAGCAGGATTAAAGAAGTGTAAACAGATTACAGTAGTAGATGTGGGGGATGCATACTTCTCAATACCATTGGATCCAGATTATAGAAAGTATACAGCATTCACAATACCGTCAGTAAATAATCAGGCACCAGGAAAAAGATATGTGTATAATGTCCTACCACAGGGCTGGAAAGGAAGTCCTTGCATCTTTCAGGGAACGGTAGCGAGCCTCTTAGAGAAATTTAGAAGACAGTATCCA---GAAGTTCAATTGTACCAATACATGGATGATTTACTCATAGGATCTGATTATGAGAAAAAGAAGCATGAAGAAATAGTGAAACAATTGAGGCAGCTACTCATGGAATGGAATTTAGAAACACCAGAGAAAAAATATCAGGG---------AGAGCCACCCTATAAGTGGATGGGGTACATATTACACCCAGACAGATGGGAGATAGAGAAGATAAAATTACC---CCCTCTAGA------AGAAGAGCCAACAGTGAATGACATACAGAAAATTGTAGGAGTTATCAATTGGGCTTCACAATTATATGAAGGGCTCAGAAC---------AAAAGAATTATGTAAACTAATTAGAGGGAATAAACCATTAGCAGAGAAAGTAAAGATGACAGAAGAAGCTAGGGAAGAATACCAGAGTAATCAGGAGGTATTACAGGAGTCAGTATCAGGCAGTTACTATGAACCAGATAAAGAATTAATTTGCAGAGTGCAAAAGGTAAAGCAAGGAATATTAACCTTTCAATGGTTGCAGGGAAAAC------------AAG------TATTAAGGGTAGGAAGATATCAAAAGAGAGGGGCAGCACATGAGAATCCTTGTCAACAGTTAGCAGCTGCCCTACAAAAGATAGGAAGAGAAAGCATAGTTATATGGGGATTTGTGCC-----------------AAAGATACAGGTACCCA--------------TACAAAGAGAGATATGGAGTCAGTGGTGGGCAGACTACTGGCAGTGTA------CATGGATCCCTGAGTTAGAATTTGTCAGCACTCCTAAGTTGGA--------GCAAGAGTGGTATACTCTAGC------------------CACAGAACCAGTGCC------AGG---AGACACCTACTATGTGGATGGAGCAGCTGAAAAGCTAGAAAAGAGAGGGAAAGCAGGATATATAACCCAGGGAGGAAGATCCAGAGTTAAGAAATTGGAAAACACCACCAATCAGCAAGCAGAACTAGAGGCTATAAAAATGGCCTTGGAGG---ATAGTAGGAGCTCAGTTAATATAGTAACAGACTCACAGTATGC------------------CTTAAGACTGCTCAGTAAGAGACCCACA-------GAAACAGATTCAGAGCTAGTAAAGGAGATCGTAGAGCTCATAAGGCAAAAGGACCAGGTATACCTAGGTTGGGTACCGGCACACAAAGGA---ATAGGAGGAAATCAAGAAATAGATCAACTAGT--------------------TAGCCAG-------------------------------------------------------------------------------------------------------------------GGAATCAGAAAGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGGT----------------------AATGTTTATAGAAAAGATAGAACCAGCTGTA-GAAGAACATGG-GAAGTTCCATAACAATGCAGCCTCTTTGCAGGAGATGTTTGACATACCCCTAGTGGTAGCAAAGCAGATAGTCAATGAATGTGCACAATGTCAACAGA------------AAGGGGAA------GCCATAACAGGACAAGTAGATGCCTCAGTG------------GGCATCTGGCAGATAGATTGCACCCACATGGAAGAA------------AAAGTCATAATAGTAGCGGTGCATGTGGCTTCAGGGTATATGGTAGCAGAAGTACTACCCAATGAGCAAGGGAAGACA---ACAGCCACTTGGCTGTTAAAGCTCTGTGCCA---TGTGGCCAGTAAAACAGATACATACAGATAATGGGCCAAATTTCATCAGTAAAGATGTGGAGGCAGTATGTTGGTGGTTAGGCATACAGCATACAACAGGGATACCTTACAACCCTCAGAGTCAAGGAGTAGTGGAAGCAAAGAACAAGGTATTAAAACAAATTATCAGCAGAATTAGAGAAGATGCACAGGAATTGAAAACTGCAGTACTCATG---------------GCTCTGCACATTCATAATTTTAAACAAAGGGGAGGACTAGGGGGAATGACAGCAGCAGAGAGGTTTATCAACATGATTAATGCAGATCTAGAAACACAATACTTACAGA---AAATAAATTCAAAAATT---TTAAAATTTAAGGTCTACTAC---------AGAGAAGGAAGAGATCC-----TCAGTGGAAAGGACCTGCTAAACTTCTGTGGAAAGGGGAAGGAG-CAGTAGTCATCAAA------CAGGGTGAGAACATCCTGGTAGTACCTAGGAGAAAAGCAAAACTAGTAAAG------GACTATG---------------------------GAGGAGAATCCTCCTCAGTGGAGATGGTGGGA--------------------------------------------------------------------TGA------------------ SIVsyk_Sykes_Monkey ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGGGGGTCTCCA----GGAGGCCCCC----------AGCCAACTTCCCAGTG-------------------------------------------------AGGAGCGAG-------------------CCATCTGCTCCCCCTCTGGAGGACATCGAAGATGGGCCATGGCTCACATGGT-------CAGC-----------------------ACAGATGAGCCAACAAGCACAAGCGAAGGCACAGAACTCTCCCTCGAAGAAACCCC----------CCACCAACAGGGAAGTGCTCTC----------------GCCGAAGGAGAGCAGTGGGAAG------------------------------------GAGGAGACCAAGAGTCTCTATCCCTCT--CTCAG------------------CTCTCTCTTTGGAGAAGACCAATGATAGAAGTAGATGTAGAAGGTGACCTGGTGCAAATGTTAGTAGATACAGGGGCAGATGATACTATAATTAGAGAAGAAGATATTCAATT----------A---CACCAACCATGGTCACCAAAAATAGTAGGAGGATTAGGAGGAAACATTACAGTT-AGGCAATATAGAAATATTAGATTCACTGTTGTTAAACCCTCAGGAAAAAGAAAGCAAGTAGAGGGGACTCTTTTAGTG---GGTCCTACGC------------------------CAGTAAATATATTAGGAAGGAATATACTTACCAAATTGGGAGTCAAATTAGT------AATGGTTC------AAACAG---CATTAGAGCCAGTCAAAGTAAGTCTGAAACCAGACAAAGAATTGCCCCGGCTAAAACAAT-GGCCATTATCGGTAGAGAAATTAGAGGCCCTCAAGGCAATAGTAGAAGACATGCTCAAGGCAGGACAATTGGAGAAAGCTAGTCCTACCAATCCTTATAATACCCCAGTATTTGTAATTAGGAAAAAGGACAAAAAGAAATGGAGGATGCTCATTGATTTTAGAAAATTAAATGAGGCCACACAAGATTTTTTCGAGGTACAATTGGGAATACCCCACCCAGGAGGACTAAAACGGCAAAAAC---TAACAATTATAGATTTAAAAGATGCATATTACTCAGTCCCCCTGGACAAAGAGTTTAGGCCATACACGGCATTTACAGTGCCAAGCATAAATAATGCCTCCCCGGGAGAAAGATATCAATTTACAGTGTTACCACAGGGATGGAAAGGATCTCCCACTATCTTCCAAAGCACAATAAATCAGATACTACAGCCATTTAGAAAGAAGTATTCA---GATCTCACTCTAATACAGTACATGGATGACTTATTGATTGGCACTGATAGATCAGAGAAGGCACATCAGGAGATAGTACAACAAATAGTGACAGCACTATTAAAAGTGGGATTTAAGGTCCCAAAAGAAAAATGGCAGGA---------CCAATATCCAATGCAGTGGTTAGGTTACACTCTTCATCCAGACAAGTGGCAGTTGCAGAAAATAGAACTC------CCTAATATAGA---TGACGAAATCACAGTGAATCAGTTACAGAAATTGATAGGAGTACTTAATTGGGCAAGCCAGATTTATTCAGGAATTAAGAC---------AAAAGAGCTCTGTAAGTGTATCAGAGGAACTAAACAATTAACAGAAGTACTCACACTTACAGAAGCAGCTGAGGCAGAATTAGAAGAGAATAGACAAATCTTAAAGGAAGAACAGGCAGGGTCTTATTATGACCCTAAAAAACCTTTAGAAGCACACATCACTAAACTAGGGTCCCAGCAATGGGGATACATGATTAAGCAAGAGCAAAAA------GGCCCAC------CCCTAATAACAGGAAAGACAGCAAAAACCTTTGCAGCACATAGTAATGACTATCAATCTCTTGCTCAATTGTTAAATAAAATAGGGATCCAATCACTATGGTATTGGGGAAAGGTACC-----------------AACATTCCATCTCCCAG--------------TAAAAAGAGAGGAATGGGAAAAATGGTGGACAGACTATTGGCAAGCCA------CATGGGTACCAGAAGTCAAATTCATAAGTACCCCGCCATTGGT--------TAGGTGGTACTATAACTTGGT------------------ACCAGAACCCATACC------AGAAGCAGTAACCTTCTACGTAGATGGAGCAGCTAATAGAGACAGCAAGACAGGAAATGCAGGATATGTAGCAAGTGATGGGACACAGAGAGTACAGTATCTGGAGCAAACAACAAACCAACAGGCAGAATTAGAGGGCTTGCTCATGGCATTGCAGG---ACTCAAAAGACAAAGTAAATATAGTAGTAGATTCACAATACTC------------------TTATGGCATTCTTATGACATGCCCCACT-------AACACAGAACACCCAATAGTGGAGCAGATAATACAAGAGGCCATAAAAAAGGAAGCCATATATGTGACATGGGTCCCAGCCCATAAAGGA---ATAGGAGGAAATGAAGCTGTTGATAAACTAGT--------------------CAGTAAA-------------------------------------------------------------------------------------------------------------------GGAATAAGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAT----------------------CCTATTCCTAGAAAGAATTCCCCAAGCACAG-GAAGATCATGA-AAGGTACCACTCAAATATGGAGTATCTTAGGCAGGAGTTTCATCTACCCCGACAGGTAGCAAAAGCAATTATACAACAATGTCCAAAATGTCAAAATA------------GAGGAGAA------CCAAAACATGGGCAAGTAGATGTAGATATA------------TATAATTGGCAGATGGACTGTACTCATGAGGAAGGC------------AAAGTAATCTGTGTAGCAGTAAACACAGCTAGTGGATATATAGAAACCAAGATCTTAAAAAGGGAAACGGGGGATGAA---ACAGCATTGTTTCTCATGCAAATAGCCAGTA---GATGGCCAATAAAACAGATACACACTGATAATGGACCAAACTTTGTCAGTGACAAGTTCAAAGCAGCATGTTGGTGGTGTGGCATAGAACACACTACAGGTATTCCATACAACCCACAAAGCCAGGGAATAGTAGAGTCCAAAAATAGGTATTTAAAAGAAGCTATCTCACAAATTAGAGACGACGTCACACATTTGCAAACAGCAGTGGCAATG---------------GCAACCTTCATCTTAAATTTTAAAAGAAAGGGAGGAATAGGGGGGATATCACCAGGAGAAAGGTACATTAATATGCTATATACAGAACTACAATTACAACA---AAATA---CAACATCACCAAAATTT---TCGAATTTTAGGGTTTACTAC---------CGCCAGGGGAAGAAC--------GAGTGGAAGGGACCAGCTCGTCTACTTTGGAAAGGTGAAGGTG-CAGTAGTGGTGCAAAC---AGAGGAGGGAGACATTTTTGCAGTACCAAGAAGAAAGGCAAAAATAATTACA------GACCATG---------------------------GAGAAAGAAT-----------GGATAGTGGTTCCCACGTGGAGAATGACCCCAAGACAGATTGA--------------------------------------------------------- SIVtal_Gabon_talapoin --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCATGGAACAGATCCCAGAGGCCCAA-GAGGAGCATGA-GAGATATCATAACAATTGGAGGGATCTAAAAGCCAGGTTCAAATTACCCACCATAGTGGCAAAAGCTATTATAGAAAGTTGCCCCAAGTGTCAAGTTC------------ATGGGGAA------CCTAGGACAGGACAAACCAATGCAGATGTA------------GGGACATGGCAAATGGATTGCACCCACTTGGAAGGA------------CAGGTGATCTGTGTAGCAGTGCATGTAGCCAGTGGCTACATAGAGACAAAGATACTGCCCAGGGAGACGGGTCGGGAA---ACCGCCCTGTTTCTTTTACAGATAGCAGGCA---GATGGCCAATAAGTCACTTACACACAGATAATGGCCCCAACTTTGTCTCGCAGGAAATGGCCGCCATGGTATGGTGGCTAAAGATAGAGCACACAACGGGGGTACCATATAACCCTCAGTCTCAGGGCAATGTAGAAAATAAAAATAAGCAATTGAAAAAGACCATTCAACAAATTAGGGATGAGGTGCAGTACCTAAGCTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SIVtrc_Temmincks_Red_Colobus --------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAGGGAATG--------------GCCGAGGGCA-------------GAGGCCCTC----------CAACAATTATCCAGTTCAAAA------------------------------AATGAATGCAGGGGTGAATACC-TTTGGG-------------CCAGTGGTGCCAACAGC------------------------------------------------------------------------ACCAGTGGATCCTACCATGCAAGAACTAGAGCAATATCTTCTGAGAGGAGCTC---------------AGATGAAGA-----------------------GGGAGAAAGAGAAAGAAATGCAG------------------------------------AAGGAGGGGAAAGTAGAATATCCCTCC--CTCAA------------------ATCTCTCTTCGAACCAGACCAATGATACAATGTATCATTGGTCGAGAGAGTGTCTCTGCGTTATTAGATACAGGAGCAGATGACACTGTAGTAG---------ATGTTCAATT----------A---GAAGGAAATTGGCAACCAAGAATAATAGGAGGTATAGGAGGAACTATGCAAGTA-AAACTATATAAAGATGTCAGAATAAAAAT---------------TTTAGGAAAGGAAGTAAGAGCAAATTTAATGACA---GGAAAAACAC------------------------CTATAAATATAATAGGAAGAAATGTGCTAGAAAAATTGGGAATGCATCTAGC------ATTTGCACAATTATCAGATA---AAATTCCAATAACAAAAGTCTCATTAAAACCTGGATGTCAAGGACCAAGAATAAAGCAAT-GGCCTCTCTCAAAAGAGAAAATTGAGGGGCTACAAAAGATATGTGATAGATTAGAAGCAGAAGGAAAAATAAGTAGGGCAGAAGCAAATAATCCTTACAATACACCAATCTTTGCAATAAGAAAGAAAGATAAAAATGAATGGAGAAAATTAATAGATTTTAGAGGACTAAATGCAGTAACACAAGACTTCTTTGAGGTACAATTAGGCATTCCTCATCCAGGAGGGTTACATAAGAAAAGAAATATAACAGTATTAGATATAGGAGATGCATATTTTTTTATCCCATTAGATCCAGAATATAGACAGTACACAGCATTTACAGTACCTTCTATAAATAATGAGAAACCAGGTACCAGATATGTATATAATGTACTCCCTCAAGGATGGAAAGGGTCTCCTTGCATATTTCAAGCAACAGTGGCTTCTTTGCTGGAGATCTTTAGAAAGAAACATCCT---AAAGTGCAGATAGTCCAATATATGGATGATCTGTATGTAGGATCAGATTATGAAAAGAAAGAACATTTGCAAATGATTCAGGAGTTGAGAGATCTTCTTTTAACTTGGAACCTGGAGACTCCAGAAAAGAAGCTACAATT---------AGAACCTCCATGTAAATGGATGGGGTATATCTTGCATCCAGATAAATGGGAAATACAGGAGATAAAATTA------CCAGA---------AGAAATAAGGACAGTAAATGATGTACAGAAACTGATAGGAAAATTAAATTGGGCAGCACAAATATATGAGGGTATAAAAAC---------AAAAGAATTGTGTAAATTAATTAGGGGAAATAAACCTCTAACAGCAGAAGTAGAATGGACCATGGAAGCAGAAGCAGAACTAGAAATCAATAGAGCTATTCTAAAGGAATCACAACAAGGAAGTTATTATG---GAGGAGGAGACTTAATAGCTGAGGTAATAAAAACAGGAACAGGGCAATGGGCCTACACAATAAAAGAAGCAGGAGAG------ACAAAAC------CATTAAAAGTAGGAAAATTTACAAGAATCAGGCATACTCATACAAATGAGCTAAGAACATTAGCTCATTGTATACAGAAAATAGGAACAGAGGCTATAGTAATTTGGGGGAAACTTCC-----------------AAAATTTAGAATCCCAG--------------TAGAAAAGGATATATGGGACATGTGGTGGTCAGAATACTGGCAGGCCA------CATGGATCCCAGAGGTAGAACATGTGTCTACTCCTTTTCTAAA--------AAGGGAATGGTACACATTAGT------------------ATCAGAACCTATAGA------AGGGGTAGAAGAAATGTATATAGATGGGTCTGCTAATAAAGAGAGCAAAGAAGGGAAAGCAGGATATTGGACTAAGAC---TAGGAACAAGATACAGAAAATCACAAATACTACAAATCAGCAGACTGAGCTGATTGCATTAAGAATGGCATTAGAAG---ACAGTTCAGATAAGGTAAATATAATCACAGACAGTCAATATGT------------------TTTAGGAATCATAAAAGATCACCCAACT-------CAAAGTGAATCTCCCTTAATGCAAGAAATAATAGACCTTCTAAAAGGGAAAGAAGAAATATATATCACATGGGTGCCAGCACATAAAGGG---ATAGGAGGAAATACAGAAATAGATGCATTAGT--------------------AAGTGCA-------------------------------------------------------------------------------------------------------------------GGCATTAGATCTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGT----------------------AATGTTTCTAGAAAATATAACCCCAGCAATA-GAGAGTCATAC-AAAATATCATCAAGGGTGGGGGGCATTAGAGGAAGAATTTCATCTGCCCACCATTCTTGCAAAAAGAATAGTAGAAGAATGTGCTACCTGTCAGGGAA------------AAGGGGGACA---CCCTATTCATGGCATGGTAGACTATGAGATA------------GGGACATGGCAGATGGACTGCACCCACTTGGAAGGA------------AAAATCATATTAAATGCAGTCCATGTGGCATCAGGCTACTTAGAAGCGAAAATAATTCCAACAGAAGATGCCTATCAA---ACAGCACTTTTCACCATACAATTAGCAGGAA---GATGGCCAGTAAAAAAGATTCATACTGATAATGGAACAAATTTCAAATCACAGAAAATGGAGGCCATATGCTGGTGGTTAGGCATAGAACAGGAATTTGGGATTCCCTACAATCCTCAGAGTCAAGGAGTAATTGAGAGTAAAAATAGAGTATTAAAACAAATAATACAAAGAATAAGAGAAGATGCAGAAAAATTGGAAACAGCATTAGCTATG---------------GCAATCTACATTCACAATTTTAAAGAAAAGGGAGGATTGGGGGGAT---CCCCAGCAGAAAGAATAGTAAATATGATACAATCAGATATAGAAACTAATCAAACACAAC---AACAAAAATTCAAATTT---AAAAATTTTCAGGTTTACTAC---------AGGACAGGAGCCTCGCA-----GCAGTGGCAAGGACCAGGTAAATTGGTCTGGAAAGGTGAGGGAG-CTTTAGTTGTGCAGAC---TCCTGAAGGAGATTTACTTACAGTTCCCAGAAGAAAAGCAAAAATCATAAAG------ACTTGGGATG------------------------GAAAAGGAAT-----------GGATAGCAGTACCACTAATTAA------------------------------------------------------------------------------ SIVwol_Wolfs_Mona_Monkey --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAATGGGTTGTACTCATTTGGAAAAC------------AAAGTGATCATAGTGGCAGTAAATGTAGCTAGTGGCTTTATAGAAACCAAGGTACTCCCAGGGGAAACAGGCAAGGAG---ACAGCACTATTTGTGCTACAATTGGCAGCTA---GATGGCCAGTAAAACATCTTCATACGGATAATGGGCCAAATTTCATTAGTCAAACAATGGCAGCAGCCTGTTGGTGGGCAAATATAGAACATACAACGGGAGTGCCATACAACCCGCAAAGTCAAGGGGTAGTAGAAAATAAGAATAAACAATTAAAAGAAGCTATAAATCTAATTAGGGAAGAAGCAGTAAGATTAGAGACAGCAGTGGCAATG---------------GCCACTCTCATTTTGAATTTTAAAAGAAGGGGAGGAATAGGGGGGATCGCTTCTTTTAATTGTTTATTC----------------------------------------------------------------------TTATTTTCTACTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCT-- SIVwrc_Western_Red_Colobus --------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTAGGGAATG--------------GGAGAGGGCA-------------GATGCCCTC----------AAACAATTACCCAGTTCAAAA------------------------------GGTGAG---GAGCTTGAACAAT-TTTGGG-CCGGCAACAATACCGTCTGCTCCTCCAAT------------------------------------------------------------------------GAGGGAGGATCCAAACATACAAGAATTAGAGAAATACCTCCTGAAAGGAGCTC---------------AATTGAAGG-----------AGCAGGCACAGGCAAAAAAGGAAGAGAAGAAGAGA------------------------------------GAAACGGGGCTGCCAGAGTGGCCTTCC--CTCAA------------------ATCTCTCTTCGAAACAGACCAATGATACAATGTATAATAGAAGGAAATAGTGTCTCAGCCTTGTTAGATACAGGAGCAGATGATACAGTAATAG---------ATATCCATTT----------AAATAATAAGAATTGGCAACCTAGAATAATTGGAGGAATAGGAGGCACTATGAATGTT-AAATTATATAGGAAAATACAAATAAGAAT---------------TTTAGGGAAAACAGTAGAAGCAGATATTATGACA---GGAAAAACTC------------------------CAATTAATATTATAGGTAGAAATGTATTAGAAAAAATGGGTATGCATTTGGC------CTTTGCACAATTATCAGATA---AGATACCCATAACAAAAGTAAGTTTGAAGCCAGGATGCACAGGACCAAGAGTGAAGCAGT-GGCCTTTATCAAAAGAGAAAATAGAAGGGCTACAGAAAATCTGTGATAGATTAGAAGCAGAAGGAAAAATTAGTAAAGCTTCCCCAGGAAATCCATATAATACTCCTATATTTGCAATAAAGAAAAAGGACAAAAATGAATGGAGGAAGCTCATAGATTTTAGAAAATTAAATGAAGTAACACAGGACTTCTTTGAAGTACAGTTGGGCATTCCTCACCCAGGAGGACTAAGAAAGAATAAAAATATTTCAGTAGTTGATATAGGGGATGCCTATTTTTCCATCCCACTAGACCCAGACTATAGGCAGTATACAGCTTTTACTGTACCATCAGTAAATAATGAATCTCCTGGGAAGAGGTATGTCTATAATGTACTTCCTCAAGGGTGGAAGGGTTCCCCTTGCATTTTCCAAGCAACAGTAGCAAGTTTGTTAGATGTATTCAAGAAACAGAATCCT---ACTATGCAGATTCTCCAGTACATGGATGATTTATATATAGGAAGTGACTTTGAAAAACCAAGGCATTTAGAGAAAGTAGAAGAGTTAAGACAACTGCTGTTGACTTGGAATTTGGAAACTCCAGAAAAGAAATTGCAATT---------AGAGCCGCCCTGCAAGTGGATGGGTTATATTCTACATCCTGATAGATGGCAAATACAGGAAATAAAACTA------CCAGA---------GGAAGTAAGAACAGTAAATGATGTACAAAAATTGGTGGGAAAATTGAATTGGGCAGCACAGATTTATGAGGGAATTCAAAC---------AAGACAATTATGCAAATTAATTAGAGGAAACAAACCCCTCACAGAAGAAGTAACATGGACAGAGGAAGCATTAGAAGAGTTAGAAATAAATAAAAGCATTCTAAAAGAGGAGCAAATGGGGGCTTATTATA---CTGGGAAAGAATTAGTGGCAGAATTAATAAAGACAGGATCAGGACAATGGGCCTATAGTATTAGAGAAGCAGGAGAA------AAGAAAC------CATTAAAGGTAGGGAAATATGGGAGGCAAAGACATACACACACCAATGAGCTTAGAAGCTTGGCTCATGCCATGCAGAAAATAGGGACAGAAAGTATAGTAATCTGGGGAAAGGTACC-----------------CAAATTTAAGATACCCA--------------TAGAAAAGGATATCTGGGACTCATGGTGGTCAGATCACTGGCAGGTCT------CATGGATTCCAGATACAGAACATGTATCAACCCCTTACTTGGC--------AAGGGAATGGTACAAAATAGT------------------ACTGGAGCCTATAGT------AGAGGTGGAAACATATTACATAGATGGATCTGCAAATAGAGACAGTAAGGAAGGGAAAGCAGGCTTCTGGACAAACTC---TAAAGAAAAAGTAATTAATTTATATAACACCACTAATCAGCAAGCAGAATTAGCGGCTTTGAAGTTAGCCCTAGAAG---ATGGGGGTTCAAAGATCAATATTATTACAGATAGTCAATATGT------------------TATGGGAATAGTAAAAGACCACCCTACT-------ATTAGTGAGTCAGCTCTAGTACAAGAAATTATAGATCTTCTAAAACAGAAAGAAGAAATTTATATTGAGTGGGTGCCAGCACATAAAGGG---ATAGGAGGTAATACAGAAATTGATAAATTAGT--------------------AAGTGCA-------------------------------------------------------------------------------------------------------------------GGAATTAGATCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGT----------------------AATGTTCTTAGAAAATATAACTCCAGCGATA-GAAAGCCATAC-TAAATATCATCAGGGCTGGAAAGCATTACAAGAAGAATTTCATATTCCACAATTAATTGCAAAAAGAATAGTAGAAGAATGTAGTACCTGTCAAGGAA------------AAGGAGGAGC---TCCACTACATGGTATGGTAGACTATGAAGTG------------GGAACATGGCAAATGGATTGTACTCATTTAGAAGGA------------AAAATCATTCTAAATGCAGTCCATGTAGCATCAGGGTATCTAGAAGCAAAAATCATTCCAGCAGAAGATGCTTATCAA---ACAGCTCTATTCCTCCTACAAATCGCAGGTA---GATGGCCTATGAAAAAGATTCATACGGATAATGGAACAAATTTTAAGTCACAGAAAATGCAGACTATCTGCTGGTGGTTAGGAATAGAACAAGAATTTGGGATCCCTTATAATCCTCAAAGTCAAGGAGTAATAGAAAGCAAAAATAGAAGGCTAAAAGAAATAATACACAGAATTCGAGAAGACGCAGAAAAGTTAGAAACAGCATTAGCAATG---------------GCACTATTCATTCACAATTTTAAAGAAAAGGGAGGATTGGGGGGAT---CCCCAGCAGAAAGATTAGTAAATATGATCACAGCAGAACTAGAAACCAATCAAACACAAC---AACAAAAATTAAAATTT---AAAAATTTTCAGGTTTATTAC---------AGAACAGGAGCCAATCA-----GCAGTGGCAAGGTCCAGGTAAGCTCCTTTGGAAAGGAGAAGGAG-CCTTAGTAGTGGAA------ACCCCAGAAGGTATAATAACAGTTCCTAAAAGGAAAGCAAAAATAATAAAG------GTCTGGAATG------------------------GAGAAGGAAT-----------GGATAGGAGTTCCTCTAATAAAGAT------------------------------------------------------TAG------------------ pSIVmb_Mohol_Bushbaby ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGGGAGAGAAGGCACAAGTACAGGAACTGGAG---GGCTCAAATCAAAAAGCAGAATTGGCAGCCTTATTGTATGCCTTACAGC---AGGAAGACCAAGAATTAAACATTATCACTGATTCTCAATATGT------------------AATGAAAGTGCTGCGACTCGTGCCATGG-------GTTAGCGATTCTCCCTTGGTGCAGAGCATCATACAAGCAGCAGAGAAAAAACAGGCTATCTATTTAGATTGGGTGCCAGGTCATAAGGGA---ATCCCAGGAAATCATAAAATTGATGAAGAAATTCAATAT-------------TGGCAAG-----------GTTTGGTTATCCAAGGCACAGGTATCCTTCCTAAAAGAGAAGAGGAT------GTAGGCTATGATTTACAAATTCCAG---AAGATGTGTACCTGCAGGGCTTGGAAAGGCGGTCCGTTCCGTTGAACTTGTGAGTTCAATGGGAAAAAGACCAATGGGGGTTGATTGTGGCAAAGTCCTCTATGGCTCAGATGGGGGTGATTCCTTTAGGTGGAGTCATAGATTCTGGGTATTGGAGGACCCATCATCATCATCCTATGGAATCTTAATATAAAGGCAGTACTCCTTAAAGCCGGAAAAAGAGTGGCTCAACTAGTTATAATGTCTCTACTTCATGAGGAGTTGCAACAAGTTCAGCAGGTCAAAATTGACACGGCCCGAGGTGAAGGAGCATTTGGTTCCACTGGAAC----------------------CTATTTCTTGGAGGCCATCCCTAGAGCAGAA-AGTGATCATGA-ACTATGGCACTCGGGGGTTAAAGCTCTCATGCAGGATTTTGGAATATCTCAAATGGTGGCTAAAGCCATCGTGCATAAATGTCCTAATTGCCAAGGGA------------AAGGGTCT------GCCATTACAGGGGTGGTGGATTACACCCCG------------GGGACATGGCAGATGGATGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ; END; BEGIN TREES; TITLE PhyML_lentivirus_phylogeny; LINK TAXA = Taxa2; TRANSLATE 1 ELVgv_Malayan_Colugo, 2 SIVwol_Wolfs_Mona_Monkey, 3 SIVden_Dents_Mona, 4 SIVdeb_De_Brazzas_Monkey, 5 SIVbkm_Black_Mangabey, 6 SIVmon_Mona_Monkey, 7 SIVreg_Red_Eared_Guenon, 8 SIVmus_Moustached_Guenon, 9 SIVgsn_Greater_Spot_Nosed_Monkey, 10 SIVasc_Red_Tailed_Monkey, 11 SIVsyk_Sykes_Monkey, 12 SIVtal_Gabon_talapoin, 13 SIVagmVer_White_Crowned_Mangabey, 14 SIVagmGri_African_Green_Monkey_Grivet, 15 SIVagmTan_African_Green_Monkey_Tantalus, 16 SIVagmSab_Afican_Green_Monkey_Sabaeus, 17 SIVmnd2_Mandrill, 18 SIVdrl_Drill, 19 SIVrcm_Red_Capped_Mangabey, 20 SIVagi_Agile_Mangabey, 21 SIVcpz_Eastern_Chimpanzee, 22 SIVgor_Gorilla, 23 HIV_1_Group_P, 24 HIV_1_Group_O, 25 HIV1_Group_U, 26 HIV_1_Group_M, 27 HIV_1_Group_N, 28 SIVcpz_Central_African_Chimpanzee, 29 HIV_2_Group_B, 30 SIVstm_Stump_Tailed_Macaque, 31 SIVsmm_Sooty_Mangabey, 32 SIVnme_Pig_Tailed_Macaque, 33 SIVmac_Rhesus_Macaque, 34 HIV_2_Group_A, 35 SIVmnd1_Mandrill, 36 SIVsun_Sun_Tailed_Monkey, 37 SIVlhoest_LHoests_Monkey, 38 SIVprg_Preuss_Guenon, 39 SIVwrc_Western_Red_Colobus, 40 SIVtrc_Temmincks_Red_Colobus, 41 SIVolc_Olive_Colobus, 42 SIVcol_Mantled_Guereza, 43 SIVblc_Black_Colobus, 44 PSIVfdl_Fat_Tailed_Dwarf_Lemur, 45 pSIVmb_Mohol_Bushbaby, 46 PSIVgml_Grey_Mouse_Lemur, 47 FIVfca_Domestic_cat_TM2, 48 FIVfca_Domestic_cat_Subtype_C, 49 FIVPleE_Lion, 50 FIVOma_Pallas_Cat, 51 FIVaju_Cheetah, 52 FIVlru_Bobcat, 53 FIVhya_Jaguarundi, 54 FIVpco_Puma, 55 FIVlpa_Ocelot, 56 ELVmpf_Ferret, 57 FIVccr_Spotted_Hyena, 58 RELIK_European_Rabbit, 59 Equine_infectious_anaemia_virus, 60 Bovine_immunodeficiency_virus, 61 Caprine_arthritis_enephalitis_virus, 62 Maedi_Visna_virus, 63 Ovine_lentivirus, 64 Mason_Pfizer_Monkey_Virus; TREE tree_1 = [&R] (1:1.03857,(((((((((2:0.2127,3:0.29868):0.05071,4:0.32619):0.06081,((5:0.29775,(((6:0.23961,7:0.25729):0.03291,(8:0.2325,9:0.23089):0.06614):0.03702,10:0.3218):0.07765):0.06824,(11:0.35869,12:0.42421):0.08527):0.04855):0.12504,((13:0.28442,14:0.27784):0.07058,15:0.25367):0.10537):0.02762,(16:0.23746,(((17:0.14857,18:0.14571):0.10451,(19:0.09524,20:0.09421):0.09481):0.05933,(21:0.24858,(((22:0.10451,23:0.09972):0.04135,24:0.17857):0.06722,(((25:0.05735,26:0.05853):0.10097,27:0.1085):0.03478,28:0.13515):0.07282):0.07198):0.10522):0.05305):0.06375):0.0273,(29:0.13972,((30:0.093,(31:0.07967,(32:0.00976,33:0.02178):0.06982):0.03688):0.05782,34:0.11453):0.03309):0.29314):0.05912,((35:0.29072,((36:0.22879,37:0.20081):0.0539,38:0.20686):0.07863):0.10511,((39:0.16077,40:0.16835):0.21188,41:0.49608):0.08164):0.04724):0.07151,(42:0.26751,43:0.34669):0.30544):0.23136,((44:0.0317,(45:0.00313,46:0.0):0.01268):0.79328,(((((((47:0.12114,48:0.09428):0.14704,(49:0.13094,(50:0.10191,51:0.12232):0.01732):0.10175):0.03168,52:0.17096):0.07583,53:0.20681):0.03995,(54:0.30759,55:0.18431):0.0533):0.24311,((56:0.58977,57:0.12619):0.0704,(58:0.6891,59:0.9732):0.06967):0.07759):0.08117,(60:1.27982,(61:0.19141,(62:0.11958,63:0.11232):0.06241):0.79026):0.15707):0.0748):0.15341):0.54161,64:2.68863); END;