#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on March 29, 2024; 10:26 GMT TreeBASE (cc) 1994-2008 Study reference: Noda-garcã­a L. 2015. Insights into the evolution of enzyme substrate promiscuity after the discovery of (beta, alpha)8 isomerase evolutionary intermediates from a diverse metagenome. BMC Evolutionary Biology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S17486] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=38; TAXLABELS Acidimicrobium_ferrooxidans_C7LZ82 Actinomyces_naeslundii_J2ZMD0 Actinomyces_viscosus_C505_F2UUE1 Arthrobacter_aurescens_A1R562 Arthrobacter_sp._A0JUZ7 Bacillus_halodurans_Q9K6Z5 'Bacillus sp. SG-1 A6CND9' Bifidobacterium_adolescentis_A7A8P7 Bifidobacterium_longum_Q8G4S5 Bifidobacterium_sp._B2EB57 Clavibacter_michiganensis_subsp._Michiganensis_A5CSK6 Clostridium_butyricum_B1QTN6 Dehalococcoides_mccartyi_A5FQ03 Dehalococcoides_mccartyi_Q3Z6V7 Dehalococcoides_sp_A8CRG7 Desulforudis_audaxviator_B1I557 Desulfotomaculum_reducens_A4J708 Geobacillus_sp._B1SQW0 Geobacillus_thermodenitrificans_A4ISR3 Heliobacterium_modesticaldum_B0TDM8 Janibacter_sp._HTCC2649_A3TLY4 Kineococcus_radiotolerans_A6WCU8 Kocuria_rhizophila_B2GKF8 Leifsonia_xyli_subsp._Xyli_Q6AE15 Marine_metagenome_CAM1 Moorella_thermoacetica_Q2RGW1 Mycobacterium_abscessus_B1MBX5 Mycobacterium_smegmatis_A0QX85 Nocardioides_sp._A1SL57 Pelotomaculum_thermopropionicum_A5CZ74 Renibacterium_salmoninarum_A9WQA3 Rhodococcus_erythropolis_B1VDA6 Rhodococcus_jostii_Q0SHY5 Salinispora_tropica_A4X9Q0 Streptomyces_griseus_subsp._Griseus_B1W0M4 Thermobifida_fusca_Q47QS4 Thermosinus_carboxydivorans_A1HMG5 marine_actinobacterium_PHSC20C1_A4AHK5 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M31567] TITLE 'Phylogenetic analysis of HisA / PriA evolutionary intermediates'; LINK TAXA = Taxa1; DIMENSIONS NCHAR=250; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250] [ . . . . . . . . . . . . . . . . . . . . . . . . .] Acidimicrobium_ferrooxidans_C7LZ82 -MELVVAVDLLDGEAVRLRQGRFDAPRRFGDPRRYVEGALDAGARWFHVVDLDRARGDRRNADMVGDLVREAGGSVEVGGGVRTARDIAELLETGASRVVLGTALVEE------TLDELPEHLVAALDYGALEVVVSAWERSGGRLLEASARLFARGVRTQLLTDVGRDGMASGPDLGTYQGLCEVVPVEVIASGGVASADDLAKLAAIRGAAVWGAVVGTALLDGSLGFDEALSACR------------ Actinomyces_naeslundii_J2ZMD0 MLTLLPAVDVADGKAVRLLQGEVGSETDYGSPVDAARDWVRAGAEWIHLVDLDAAFGRGSNSELLSRIVGEVGIKVELSGGIRDDASLARALAAGAARVNLGTAALEDPEWTERVIAEHGDKIAVGLDVRGTTLAARGWTKEGGDLWETLERLNAAGCARYVVTDVTRDGTLSGPNTTLLTEVCQRSPAPVVASGGIAHLDDLVALRRLTPLGLEGAIVGKALYNGNFTLQEALAVAG------------ Actinomyces_viscosus_C505_F2UUE1 MLTLLPAVDVADGKAVRLLQGEVGSETDYGSPVDAARDWVRAGAEWIHLVDLDAAFGRGSNHELLARIVGEVGIKVELSGGIRDDASLARALAAGAARVNLGTAALEDPEWTERVIAEHGEKIAVGLDVRGSTLAARGWTKEGGDLWETLERLNAAGCARYVVTDVTRDGTLSGPNTELLTEVCQRSPAPVVASGGIAHLDDLVALRRLVPLGLEGAIVGKALYNGNFTLQEALAVAG------------ Arthrobacter_aurescens_A1R562 -LELLPAVDIVDGQAVRLLQGEAGSETSYGTPLEAALNWQNDGAEWVHMVDLDAAFGRGNNAALISDVVSQLNVKVELSGGLRDDESLERALELGVARVNLGTAALENPEWTRKAIDRFGDKIAVGLDVRGTTLAGRGWTKEGGDLWEVLARLEDAGCARYVVTDVTKDGTLQGPNVELLRQMVEKTGKPVVASGGISSLEDLRVLRELVPLGVEGAIVGKALYAGAFTLPEALDVAG------------ Arthrobacter_sp._A0JUZ7 -LELLPAVDVVNGQAVRLVQGEAGSETSYGTPLEAALNWQEQGAEWVHLVDLDAAFGRGSNAELLREVVGRLDIKVELSGGLRDDESLEKALDLGVARVNLGTAALENPEWTARAIDRFGDKIAVGLDVRGTTLAGRGWTKEGGDLWDVLARLEEAGCARYVVTDVTKDGTLQGPNVELLRKMVERTGKPVVASGGISSLEDLKVLRSLVPLGVEGAIVGKALYAGAFTLPEALDVAG------------ Bacillus_halodurans_Q9K6Z5 -FIIYPAIDMRDGKCVRLVQGDYNQETVYGSPFTMAKSFAEQGAEWIHMVDLDGAKKERMNHEHVVKVATELDVNVQVGGGIRTAEDIAYYLDRGISRVILGSVAVNNPAFTKEMLQKYGEKIAIGLDARDGYVATEGWLETSSKAETLGQELARHGAEVFIFTDISRDGMLSGPNTEAIVQLAKATGKQVIASGGVSSLQDLDALRNEKQNGIAGAIVGKALYTNQFTLEDALKEES------------ 'Bacillus sp. SG-1 A6CND9' -FTIYPAIDMRGGKCVRLLQGDYSKETVYGSPFDMAKRFVDEGAQWIHMVDLDGAKGSRVNDKFVIAVANELGAKVQIGGGIRSEEDIEYYLNNGVQRVIIGSLAVSQTELVKSWLAKYGDRIAIGLDAKDGFVATHGWIETSQKAVDLGVELAQAGAETFIFTDIATDGMLSGPNVEAVAELAKATGKEVIASGGVSSMDDLRLLKEYEGKGVAGAIVGKAIYTGKVSVEDAVKEVS------------ Bifidobacterium_adolescentis_A7A8P7 -LTLLPAVDVRDGKAVRLRQGESGSETDYGSPLEAARTWVESGAEWIHLVDLDAAFGTGNNRDQLRAIVKELKVNIEMSGGVRDDASLDAALEAGAARVNIGTAALENPDWTASVIKKYGDRVAVGLDVRGHTLAARGWVKEGGDLFETMKFLDSVGCSRYVVTDVARDGMMSGPNIELLREVASRTDAKVTASGGISKLDDLRNIKELAELGVDAAILGKSLYARAFTLEEALEVAR------------ Bifidobacterium_longum_Q8G4S5 -LTLLPAVDVRDGKAVRLRQGESGSETDYGSPFEAARTWVEAGAEWIHLVDLDAAFGTGNNRDQLREIVHELRVNIELSGGVRDDASLDAALEAGAARVNIGTAALENPDWTASVIKKYGDRVAVGLDVRGHTLAARGWTREGGDLFETMKFLDSVGCSRYVVTDVAKDGMMSGPNIQLLSEVAERTDAKVTASGGISKLDDLRAIKELAEIGVDSAILGKSLYARAFTLQEALEVAK------------ Bifidobacterium_sp._B2EB57 -LTLLPAVDVRDGKAVRLRQGESGSETDYGSPLDAARTWVDAGAQWIHLVDLDAAFGTGDNRAQLREIVRQLKVNIEMSGGVRDDASLDAALDAGAARVNIGTAALENPEWTARVIDKYGDKVAVGLDVRGHTLAARGWVKEGGGLFETMRFLDDAGCSRYVVTDVTRDGMMSGPNIDLLREVAERTDARVTASGGISKLDDLRAIKELLPLGVDSAILGKSLYAGAFTLEEALAVAN------------ Clavibacter_michiganensis_subsp._Michiganensis_A5CSK6 -LTLLPAVDVAGGQAVRLTQGAAGTETGYGDPVDAARDWAEQGAEWLHLVDLDAAFGRGDNLSVISRVIRAIGVQIELSGGIRDDRSLDVALESGATRINLGTAALENPEWAASVIAQHGEAVAVGLDVRGRTLSARGWTQDGGDIWEVLERLEDAGCARYVVTDVTKDGTLQGPNLQLLRDVLERTERPVVASGGVSSLDDIQALRELVPLGLEGAIVGKALYAGAFTLGEALDVAG------------ Clostridium_butyricum_B1QTN6 -MIILPAIDIIDGKPVRLYQGDYDKKEIVADIFETAKSFEKMGAEYIHLVDLDGAKGSNDNHELVIKIANMLDIPVELGGGIRSFETIKYLLENGVSRVILGTIAMEDENLLKRAISEYGEKIAVGIDCKDGKVYGRGWLEGSNDYIEFAQKMESLGVKNIIVTDISKDGTLQGPNLDMLKKIKETVNIDITASGGIRDIENIKDLNEI---GLYGAITGKAIYAETLSLEEAIKAVR------------ Dehalococcoides_mccartyi_A5FQ03 -IEIIPAIDILGGRCVRLFQGDYAQETVYSDPVGTAMRWQSLGAPRLHVVDLDGAAGQSVNFELIKEIANSALIPVEVGGGIRSMETVKKLLVAGVDRVILGTAAVENPELVKEICARYADSVAVSIDARNGKVATRGWVTNTEDALELARSMKKLGIRRFIYTDISRDGTLSEPNFAAIRDLISAINVPVIASGGVSSLSHLRLLKDI---GAEGAIVGKAIYTGDLNLKRAFEDLS------------ Dehalococcoides_mccartyi_Q3Z6V7 -MEIIPAIDILGGRCVRLLQGDYAQETVYSDPVGTAMRWQSLGAPRLHVVDLDGAAGESVNFELIREIANSALIPVEVGGGIRSMDTVKKLLTAGVDRVILGTVAVENPELVREICARYADSVAVSIDARNGKVATRGWVNSTEDALELARSMKKLGVKRFIYTDISRDGTLSEPNFAAIRDLISAINMPVIASGGVSSLSHLRLLKDI---GAEGAIVGKAIYTGDLNLKRAFEELS------------ Dehalococcoides_sp_A8CRG7 -IEIIPAIDILGGRCVRLLQGDYAQETVYSDPVGTAMRWQSLGAPRLHVVDLDGAAGESVNFELIREIANSALIPVEVGGGIRSMDTVKKLLTAGVDRVILGTAAVENPELVREICARYADSVAVSIDARNGKVATRGWVNSTEDALELARSMKKLGVKRFIYTDISRDGTLSEPNFAAIRDLISAINMPVIASGGVSNLSHLRLLKDI---GAEGAIVGKAIYTGDLNLKRAFEELS------------ Desulforudis_audaxviator_B1I557 -MLIIPAVDLRGGRCVRLFQGRADQETVYSDPVAVARTWEEQGARRLHVVDLDGAFGKPQNSGVVLDIVKSVNIPVQVGGGIRNPENVKCYLEHGVDRVILGTAALTNPEFLDAVVAAYGERIVVGVDCRDGRVCVQGWEQTAADVLPFLEELVRRGVRRVVFTDVKRDGTLEGPNLEEIARVAAHTELKVIASGGVSRLEDLRALKKLEHLGVDSVIIGKALYAGTITLAEALALER------------ Desulfotomaculum_reducens_A4J708 -MILFPAIDLKEGQCVRLVEGRMDSATVYSDPGSMARLWQDQGAQYIHVVDLDGAFGQPRNRQSIAQIVQGVQVPVQVGGGIRDLETIEDLLSLGVDRVILGSAAILKPELVAEACRKYGQRILLGIDAKDGQVAIQGWGETVKTALDLALEMKQLGIERAVFTDIRRDGKLSGPNLAATGELARNSGLRVIASGGVASLEDIRQLKKLEQDGVEGAILGKALYTNAVKLPEALVIAR------------ Geobacillus_sp._B1SQW0 -FTIYPAIDMRGGKCVRLLQGDYHKETVYGSPVEMAAFFAEQGAEWIHMVDLDGAKGKRINDQFVVEVAKQLPVKVQIGGGIRTEDDIVYYLENGVARVILGSAAIADPPFVKEMLKKYGERIAIGIDAKNGFVATEGWLNTSNKATDLGKELAEAGAQTFIFTDIATDGMLSGPNIQAVVEMARATEKHVIASGGVSSLEDLVSLQTYADAGVVGAIVGKALYTKKFTVAEALKVVQ------------ Geobacillus_thermodenitrificans_A4ISR3 -FTIYPAIDMRGGKCVRLLQGDYNKETVYGSPVAMAEQFAAQGAEWIHMVDLDGAKGRRVNDRFVIEAANRLSVNVQVGGGIRTEEDVAYYLERGVARVILGSAAISNPTFVKKMLQTYGRRIVIGIDARDGFVATEGWLETSNKAEELGQMLAEAGAETFIFTDIATDGTLSGPNITAAVRLAEATGKEVIASGGVRSLDDLRALREYAEQGIGGAIVGKALYTNQFTLAEALKAVN------------ Heliobacterium_modesticaldum_B0TDM8 -MLIFPAIDLKGGRCVRLYQGRMEDAIVYNDPVSQALAWQAKGAQMIHLVDLDGAFGEPKNLPVIQAILEAVTVAVQLGGGIRDLNIIDRYLRMGVSRVIIGTAAIKNPELLSVACKEYGQRIVLGLDARDGKVATDGWAGTSQTALELALEMKGRGLRRVVYTDISKDGTLAGPNLAATAELARATGLKVIASGGFATIDDVKAAAALEGDGIEGAILGKSIYTGAIDVAEAIRVAR------------ Janibacter_sp._HTCC2649_A3TLY4 -LQLLPAVDVAGGRAVQLVQGVAGSGGEFGEPVEAALRWQEQGAEWLHLVDLDAAFGRGDNAELLAQIVGQLDIDVEMSGGIRDAETLERALATGCRRVNLGTAALENPEWTASAIAEHGDRIAVGLDVRGTTLAARGWTQEGGDLWETLERLDAEGCARYVVTDVNKDGMLKGPNLDLLRDVCTRTDRPIIASGGVSTLADIEALRTMVGEGVEGAITGSALYRGAFTLPDALDVAG------------ Kineococcus_radiotolerans_A6WCU8 -LELLPAVDVADGQAVRLVQGEAGSETFYGAPLDAALAWQEAGAEWVHLVDLDAAFGRGSNRELLAEVVGRLDVAVELSGGIRDDASLEAALATGCRRVNLGTAALEDPDWTRSAIARHGDRIAVGLDVRGTTLAARGWTREGGDLWEVLARLDADGCARYVLTDVTKDGTLRGPNTDLLREVCARTQAPVVASGGVSSLEDLRVLRGLVDLGVEGAIVGKALYAGNFTLPQALDVAG------------ Kocuria_rhizophila_B2GKF8 -LELLPAVDVQGGQAVRLVQGEAGSETGYGDPLEAARAWQDAGAEWLHLVDLDAAFGRGDNIEVLRHVAENLDLKIEMSGGIRDDESLERVLSLRPARINLGTAALENPQWTHRVIAEHGDLIAVGLDVRGTTLAARGWTEEGGDLWEVLERLEADGCARYVVTDVTKDGTLRGPNTELLAEVARRTDKPVVASGGISSLEDIAALRELVPSGVEGAIVGKALYAGRFTLAQALDVAG------------ Leifsonia_xyli_subsp._Xyli_Q6AE15 -LVLLPAVDVADGKAVRLTQGAAGSETSYGDPVDAAAEWADAGAEWIHLVDLDAAFGRGDNRGLLKRVIRQTGVKIELSGGIRDDDSLEHALEIGATRVNLGTAALENPEWASHVIGQYGEAIAVGLDVRGTTLAARGWTREGGDLWQVLERLEEAGCARYVVTDVTKDGALKGPNLDLLRQVVERTERPVVASGGIASLDDIAALRELVSLGVEGAIVGKALYSGAFTLPEALDVAG------------ Marine_metagenome_CAM1 -FALLPAVDVAEGRAVRLVQGAAGTETDYGDPVAAARSWVEQGAPWIHLVDLDAAFGRGDNRAVVHRVVQAVDVHVEVAGGIRDDASLDAALASGASRAVIGTAAMENPDWVRSAIDRYGDRLAVSLDVRGHTLAARGWTTEGGDLFETIGRLDADGCARYIVTDVEKDGMMHGPNLHLLKKVCDHTTLPP----------------------------------------------------------- Moorella_thermoacetica_Q2RGW1 -MLVMPAIDLREGRCVRLYQGRIEAETVYSDPVAVARGWVERGARWLHVVDLDGAFGRPRNLEVIAAIIRAAGVPVQVGGGIRSLESLAGVLAAGASRVVLGTVAITNPEVVATAVERYGERVVVGIDSLDGQVAIEGWEATVAGAVEFARQMASLGVTRAVFTDIGRDGTLQGPNIAATREMARSGGLKIIASGGIASLDDLRKLKELAAEGVEGAILGRSLYNGNFTLEEALAVAA------------ Mycobacterium_abscessus_B1MBX5 -LVLLPAVDVADGQAVRLVQGKAGSETTYGSPRDAALAWQNDGAEWVHLVDLDAAFGRGSNRELLAQVVGELDVKVELSGGIRDDEALTAALATGCARVNLGTAALEDPEWCASAIARHGERVAVGLDVGAHRLRGRGWVSDGGDLWEVLERLRAQGCSRYVVTDVTKDGTLTGPNLELLAQVAGVANAPVIASGGVSSLDDLRAIAELTGAGVEGAIVGKALYAGRFTLPDAIAAVS------------ Mycobacterium_smegmatis_A0QX85 -LILLPAVDVVNGQAVRLVQGKAGSETDYGSAIEAAEAWQRDGAEWIHLVDLDAAFGRGSNRELLAEVVGKLDVAVELSGGIRDDESLRAALDTGCARVNIGTAALENPQWCARAIAEHGDRVAVGLDAGGFRLRGRGWETDGGDLWEVLDRLDSEGCSRYVVTDVSKDGTLTGPNLDLLAAVAGRTDAPVIASGGVSSLDDLRAIATLTGVGVEGAIVGKALYAGRFTLPQALSAVS------------ Nocardioides_sp._A1SL57 -LELLPAVDITEGRAVQLAQGVAGSERTYGDPVAAAMRWQEAGAEWIHLVDLDAAFGRGSNRELQAEIVGALDVQVEMSGGIRDDESLAAALATGCRRVNIGTAALEQPEWCRRVIAEHGDRVAIGLDVRGRTLAARGWTKDGGDLYETLARLDAEGCARYVVTDVNKDGMLQGPNLQLLRDVCAATSAPVVASGGVTTLADIEALMELVPVGVEGAIAGTALYEGRFTLEDALALTR------------ Pelotomaculum_thermopropionicum_A5CZ74 -MLIIPAIDLREGNCVRLVEGRLDRETVYSDPVAVAGMWQSQGARMLHVVDLDGAFGAPKNLDVIGEILSAVSIPVQVGGGIRSMEAVERLLELGAARVILGTAAILKPQLVAEACARYGEAVLVGIDGRNGRVAIEGWGVTVDGTVELALEMKRLGIKRAVFTDIRRDGTLRGPNLEAIREFAAATGLKVIASGGVSNAEDLRALKKLEPLGVEAVIMGKALYAGTVKMSEALAIAS------------ Renibacterium_salmoninarum_A9WQA3 -LELLPAVDVADGQAVRLVQGEAGSETSYGAPIDAALAWQQDGAEWVHLVDLDAAFDRGSNLALLRDVVAQLNVKVELSGGIRDDASLEGALKLGAERVNLGTAALEDPVWTARAIERFGDKIAVGLDVRGTTLAARGWTKDGGDLWEVLARLEDAGCARYVVTDVTKDGTLRGPNIELLQQMLERTDRPVVASGGVSSLDDLVQLRALVPHGLEGAIVGKALYAGAFTLPEALDVAG------------ Rhodococcus_erythropolis_B1VDA6 -LVLLPAVDVVNGEAVRLVQGEAGSETGYGSPRDAALAWQNDGAEWVHLVDLDAAFGRGSNSELLAGVIGDLTVKVELSGGIRDDASLEAALATGCARVNLGTAAIEDPEWCARALAKYGDKIAVGLDVGQYRTRGRGWVTDGGDLWETLARLDRDGCTRYVVTDVSKDGTLTGPNLELPSQVCAVTDAHVVASGGVSTIEDLLAISSLVDQGVEGAIVGKALYAGRFTLPEALAAVS------------ Rhodococcus_jostii_Q0SHY5 -LVLLPAVDVVNGEAVRLVQGEAGSETGYGSPRDAALAWQNDGAEWVHIVDLDAAFGRGSNRELLADVVGELDVQVELSGGIRDDASLEAALATGCGRVNLGTAAIENPEWCARAIAKYGEKIAVGLDVGEYQLRGRGWVTEGGNLWETLARLDKDGCSRYVVTDVSKDGTLTGPNLELLAQVCAATDAPVVASGGVSTIDDLRAIAGLVDQGVEGSIVGKALYAGRFTLPEALAAVS------------ Salinispora_tropica_A4X9Q0 -LTLLPAVDVADGQAVRLVQGAAGSETVYGDPFDAALAWQRDGAEWIHLVDLDAAFGRGSNAELLADVVRRLDVRVELSGGIRDDASLQAALATGAARVNIGTAALEDPQWCDRVCGEYGDRVAIGLDVRGQTLSARGWTRDGGDLWEVLARLDRAGASRYVVTDITKDGTMRGPNLGLLREVCARTNAPVIASGGISTLADLRALAALEPVGVEGVIAGKALYAGAFTVAEALRTLA------------ Streptomyces_griseus_subsp._Griseus_B1W0M4 -LELLPAVDVRDGQAVRLVHGESGSETSYGSPLEAALAWQSAGAEWLHLVDLDAAFGTGDNRALIAEVAGAMDIKVELSGGIRDDASLAAALATGCRRVNLGTAALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYETLARLDSEGCARYVVTDIAKDGTLEGPNLGLLRDVCAATDRPVVASGGVSSLDDLRAISLLVPEGVEGAIVGKALYAKAFTLEEALKAVA------------ Thermobifida_fusca_Q47QS4 -LELLPAVDVAGGQAVQLVQGKDGTGGRYGDPLNAALTWQNAGAEWIHLVDLDAAFGRGHNRELLASIVGKLDIKVELSGGIRDDESLNAALATGCHRVNIGTAALENPDWCAKVIAEHGDRVAIGLDVRGTTLAARGWTRDGGDLYETLERLEAAGCARYIVTDVNKDGTLKGPNLDLLRDVCSRTDKPVVASGGISSLDDLRALAALVPEGVEGAIMGTALYEGAFTLEEALATVR------------ Thermosinus_carboxydivorans_A1HMG5 -MIVFPAIDIRGGKCVRLTEGRFDAETVFSNPVEVAKRWRREGAEYLHVVDLDGAVGRPVNLELVIAIAKKVDIPVQLGGGIRTMDTIDTVLAAGISRIILGSVAVRQPALVKEACARYGDRIVVGIDARDGVVAVEGWGVSGQGAEELARQMAAVGVARIIYTDISRDGTLTGINVEATCALACAAGVPVIASGGLRGLDDIRALWQARTAGIEGVIAGKALYTGALSLRSAIRVAK------------ marine_actinobacterium_PHSC20C1_A4AHK5 -LTLLPAVDVADGKAVRLTQGEAGTEKSYGDPCAAAHDWVDQGAEWIHLVDLDAAFGRGNNQAMIKKVIKSTRVNIELSGGIRDDESLEAALATGAKRINLGTAALENPEWAAHVIAEYGEAIAVGLDVRGTTLAARGWTQEGGDLWTVLERLEAAGCCRYVVTDVTKDGTLQGPNVELLRQVMERTHRPVIASGGVSSLDDLIELRELVPQGLEGAIVGKALYAKAFTLAEALDVSS------------ ; END; BEGIN TREES; TITLE 'Phylogenetic analysis of HisA / PriA evolutionary intermediates'; LINK TAXA = Taxa1; TRANSLATE 1 Arthrobacter_sp._A0JUZ7, 2 Mycobacterium_smegmatis_A0QX85, 3 Thermosinus_carboxydivorans_A1HMG5, 4 Arthrobacter_aurescens_A1R562, 5 Nocardioides_sp._A1SL57, 6 Janibacter_sp._HTCC2649_A3TLY4, 7 marine_actinobacterium_PHSC20C1_A4AHK5, 8 Geobacillus_thermodenitrificans_A4ISR3, 9 Desulfotomaculum_reducens_A4J708, 10 Salinispora_tropica_A4X9Q0, 11 Clavibacter_michiganensis_subsp._Michiganensis_A5CSK6, 12 Pelotomaculum_thermopropionicum_A5CZ74, 13 Dehalococcoides_mccartyi_A5FQ03, 14 'Bacillus sp. SG-1 A6CND9', 15 Kineococcus_radiotolerans_A6WCU8, 16 Bifidobacterium_adolescentis_A7A8P7, 17 Dehalococcoides_sp_A8CRG7, 18 Renibacterium_salmoninarum_A9WQA3, 19 Heliobacterium_modesticaldum_B0TDM8, 20 Desulforudis_audaxviator_B1I557, 21 Mycobacterium_abscessus_B1MBX5, 22 Clostridium_butyricum_B1QTN6, 23 Geobacillus_sp._B1SQW0, 24 Rhodococcus_erythropolis_B1VDA6, 25 Streptomyces_griseus_subsp._Griseus_B1W0M4, 26 Bifidobacterium_sp._B2EB57, 27 Kocuria_rhizophila_B2GKF8, 28 Acidimicrobium_ferrooxidans_C7LZ82, 29 Marine_metagenome_CAM1, 30 Actinomyces_viscosus_C505_F2UUE1, 31 Actinomyces_naeslundii_J2ZMD0, 32 Rhodococcus_jostii_Q0SHY5, 33 Moorella_thermoacetica_Q2RGW1, 34 Dehalococcoides_mccartyi_Q3Z6V7, 35 Thermobifida_fusca_Q47QS4, 36 Leifsonia_xyli_subsp._Xyli_Q6AE15, 37 Bifidobacterium_longum_Q8G4S5, 38 Bacillus_halodurans_Q9K6Z5; TREE con_50_majrule = [&R] (20:0.2896643000000001,((33:0.29570260000000004,((12:0.20979100000000006,(9:0.1909537,19:0.4082272):0.13305849999999997):0.07371872000000002,(3:0.3964993,(22:0.6132995,(34:0.0041222659999999856,(13:0.047034279999999984,17:0.0066068369999999765):0.009837147000000046):0.3526827,(38:0.18781479999999995,(8:0.1155583,(23:0.16543469999999993,14:0.225553):0.04483647000000002):0.06257646000000006):0.35068979999999994):0.09197047000000003):0.16806180000000004):0.048839580000000105):0.1620919999999999,(28:1.154607,(29:0.26065270000000007,((26:0.04054126000000002,(37:0.04442308000000006,16:0.027745850000000072):0.06510175000000007):0.15478999999999998,((31:0.015953490000000015,30:0.013013280000000016):0.16187150000000006,(((18:0.10318889999999992,(4:0.060341179999999994,1:0.05059944000000005):0.06596125999999991):0.06112845000000011,(27:0.1752623000000001,(36:0.08163195999999995,(7:0.14362439999999999,11:0.12623549999999994):0.05734405999999992):0.10494330000000007):0.04201739999999998):0.03871374999999999,(15:0.10372569999999992,((10:0.21764650000000008,(35:0.11294540000000008,(6:0.18638390000000005,5:0.14271980000000006):0.07475137999999992):0.06924526999999991):0.02457318999999991,(25:0.1540534,((24:0.0770024199999999,32:0.042796499999999904):0.06878987000000003,(2:0.1212245999999999,21:0.09355073999999997):0.052188789999999985):0.10400359999999997):0.03784589999999999):0.043522629999999896):0.04234298999999997):0.05422040000000006):0.07261932999999998):0.10809630000000003):0.3987019999999999):0.28171040000000014):0.14483215); END;