#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 19, 2024; 23:24 GMT TreeBASE (cc) 1994-2008 Study reference: Lanze C.E., Burgos-garay M.L., Hong C., & Moorman G.W. 2015. Pythium and Phytopythium species in two Pennsylvania greenhouse irrigation water tanks. Plant Disease, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S17766] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=29; TAXLABELS Pythium_adhaerens_OOMYA174_07 Pythium_angustatum_OOMYA175_07 Pythium_apleroticum_OOMYA234_07 Pythium_chamaehyphon_OOMYA088_07 Pythium_cinnamomi_OOMYA017_07 Pythium_coloratum_OOMYA1380_08 Pythium_dissotocum_OOMYA1449_08 Pythium_helicoides_OOMYA1420_08 Pythium_litorale_OOMYA1379_08 Pythium_marsipium_OOMYA235_07 Pythium_middletonii_OOMYA177_07 Pythium_pectinolyticum_OOMYA1615_08 Pythium_rostratifingens_OOMYA1699_08 Pythium_sp_nov_OOMYA1344_08 Pythium_sp_nov_OOMYA1646_08 Pythium_sp_nov_OOMYA1702_08 Pythium_sp._TypeI Pythium_sp._TypeII Pythium_sp._TypeIIIe Pythium_sp._TypeIIIs Pythium_sp._TypeIV Pythium_sp._TypeIX Pythium_sp._TypeV Pythium_sp._TypeVI Pythium_sp._TypeVII Pythium_sp._TypeVIII Pythium_sp._TypeX Pythium_sp._TypeXI Pythium_sp._TypeXII ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M32341] TITLE Pythium_ITS_and_COX1; LINK TAXA = Taxa1; DIMENSIONS NCHAR=1837; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800 1810 1820 1830 1840 1850 1860 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Pythium_adhaerens_OOMYA174_07 ------------------------------------------------------AATAAATGTTGATATAATACAGGATCTCCTCCACCTGATGGATCATAGAATGAAGTATTTAAATTTCTATCTGTTAAAAGCATTGTAATTGCTCCAGCTAATACAGGTAAAGTTAATAATAATAAAAAAGCTGTAATAAAAATAGCCCATACGAATAAAGGTAATCTATGAAAACTTAAACCTGGAGCTCTCATATTATAAATAGTAGATAAGAAATTAATAGCACCTAATAATGATGAAATACCTGATAAGTGTAAACTAAAAATAGCTAAATCAACAGAAGGACCTGAGTGTGCTTGAACACTTGATAATGGTGGATAAACAGTCCAACCTGTACCAGCACCAGATTCTACAATAGCTGAAGATACTAATAATAATAAAGAAGGAGGTAATAACCAAAAACTAATATTATTCATTCTAGGGAAAGCCATATCTGGTGCACCAATCATTAAAGGTACAAACCAATTACCAAAACCACCTATTAATACAGGCATAACCATAAAGAAAATCATAATAAAAGCATGAGCTGTAACAACAACATTATATAAATGATGATTTCCCATAAAAATTTGATTACCTGGTTGTGCTAACTCCATTCTAATTAAAACAGATAAAGTTGTACCAACTACACCTGAAAAAGCACCAAAAATTAAATATAAAGAACCTATATCTTTATGATT---------------CTTAAGTTCAGCGGGTAATCTTACCTGATATCAGGTCCAATTGAAA---------GAATGTGACACTGAGTAAAA------------CCCAGCA{CT}CACGG-TCCCAAATTGG-TGTTGCCTCCTTTACTCTCACCGAAG--------------------------CAAGAGCGTTCGAGAGCAG--CGACCTACTACTACACAG{CT}AACCA--TTTGCCC-AGACCATTGCCTCACACTATTTTCAGGTACACC--TCAAGGAA-AGAACAGAAAACCACACTCCGTCA---GCTGCAAAGTCGG{AG}CCG------------AAG{CT}CTAACATACCGCCAATAGAGGTTG-CTTCCTTTAA{CT}GTCC-TAACCGAAGTCGCCCGAAAGCGCAAAGCG-ATCCGAACAGATCACTGCGTTCGCAA-GCCACACTTCTAC{AT}-TGAACACAAGAAAG--AGCGAACGTACGTTTAAAGAGACTCG--CGTCTTCTCCT-----CCGAAGAGGGA---------GTCAACGAGACATCTCAC{AC}TTCTGCCAT-----CTCTCTTCCTGACTACACAG-AAAAAAAGAGGCAAGTTTGTTGTACGGACACTGATACAGGCATACTTCCAGGCATAACCCGAAAGTGCAATGTGCGTTCAAGATTTCGATGACTCACTGAATTCTGCAATTCGCATTACGTATCGCAGTTCGCAGCGCTCTTCATCGATGTGCGAGCCTAGACATCCACTGCTGAAAGTTGTTATTGA--TTAAAACCAAAGACTTTCGTTTTTGGAGTATAGTTCAGTATT------AAAGT-AATGGGTTTGAAAT----GTACATCGGCAAG----------------CCACCATAA------------------------------CAGC{AG}GC--TC-ACCTTCGTTCAGCTCCCCG----------AGAGGAGCACAGAACACA------------------------------------------------------------------------TTT------------TCAACGGTTCACGTGGAAAAGT--TT--------------- Pythium_angustatum_OOMYA175_07 ------------------------------------------------------AATAAATGTTGATATAAAACTGGATCACCTCCACCTGAAGGATCATAGAAAGAAGTATTTAAATTTCTATCTGTTAATAACATAGTAATAGCACCTGCTAATACTGGTAAAGTTAATAATAATAAGAAAGCTGTAATAAATACAGACCATACAAATAATGGTAATCTATGAAAACTTAAACCTGGAGCTCTCATATTATAAATTGTTGATAAGAAATTAATAGCACCTAATAATGATGAAATACCCGATAAGTGTAAACTAAAAATTGCTAAATCTACTGAAGGTCCTGAGTGAGCTTGTACACTTGATAAAGGTGGATATACTGTCCAACCTGTACCAGCACCTGATTCAACAATAGCTGAAGATACTAATAATAGTAATGATGGAGGTAATAACCAAAAACTAATATTATTCATTCTAGGAAAAGCCATATCTGGAGCACCAATCATTAAAGGTATAAACCAATTACCGAAACCACCTATTAAAACAGGCATAACCATGAAGAAAATCATAATAAAAGCATGAGCTGTTACAACAACATTATATAATTGATGGTTTCCCATAAAAATTTGATTACCTGGTTGTGCTAATTCCATTCTAATTAAAACAGATAAAGTTGTACCAACTACACCTGAAAAAGCACCAAAAATTAAGTATAAAGTACCTATATCTTTGTGATT---------------CTTAAGTTCAGCGGGTAATCTTACTTGATATCAGGTCCAAATTGA----------AAAAGCGCCCGTGAAATAAA-------------TCCCACAGACTAGTCCCAAATTGG-TGTTGCCTCCTTTACCCTAC----GA--------------------------GTAGGGCGTCCAAGCGCAG--CAAAATTCTACTACACAATAACCA--TTTGCCT-AGACCATTGCCTCACACAA--GACAGGTACACC--TCAAGGAA-AGAACAGAAAACAACACACCGTCA---GCTGCAAAGTCGGGCCG------------AAGCCTAACATACCGCCAATAGAGGTTG-CTTCCTTTAATGTCC-TAACCGAAGTCGCCCACTCGCGCAAAGCG-ATCCAAACAGATCACCGCGTTCGAAA-GTCACACTTCATCT-TAGACACAAGAAAG--AGCGAACGTACATTTAAAGGGACTCG--CGTCTTCTCCT-----CCGAAGAGGGA---------GCCAGCGAGACACCTCACAGTCTGCCAT-----TTCTCTCCTTGACTACACAA-AAAAAGAAAGGCAAGTTTGATGTACGGACACTGATACAAGCATACTTCCAGGAATATCCCGAAAGTGCAATGTGCGTTCAAAATTTCGATGACTCACTGAATTCTGCAATTCGCATTACGTATCGCAGTTCGCAGCGTTCTTCATCGATGTGCGAGCCTAGACATCCACTGCTGAAAGTTGTTATTGA--TTAAAACCAAAAACTTTCGTTCTCGGAGTATAGTTCAGTATT------AGTTT-AATGGGTTTGAAA-----GTACATCGGCAAA-------------GCCGCACATACA-------------------------------TGCAGC--TCGACCTTCGTTCAGCCCTCCC--------GAAAGAGAGCACAGAACATA------------------------------------------------------------------------ATT------------GTAACGGTTCACGTGGAAAGTT--TTTTGG-TGTGG----- Pythium_apleroticum_OOMYA234_07 ------------------------------------------------------AATAAATGTTGATATAATACTGGATCACCTCCACCTGATGGGTCATAAAAAGATGTATTTAAATTTCTATCTGTTAATAACATTGTAATTGCTCCAGCTAATACTGGTAATGTTAATAATAATAAGAAAGCTGTAATAAATACTGACCAAACGAATAAAGGTAATCTATGGAAACTTAAACCAGGAGCTCTCATGTTATAAATAGTTGATAAGAAGTTAATAGCACCTAATAAAGATGAAATACCTGATAAGTGTAAACTAAAAATAGCTAAATCTACTGAAGGTCCAGAGTGTGCTTGAACACTTGATAAAGGAGGGTAAACTGTCCAACCTGTACCAGCACCAGATTCTACAATAGCAGAAGATACTAATAATAATAATGATGGAGGTAATAACCAAAAACTAATATTATTCATTCTAGGGAAAGCCATATCTGGAGCACCTATCATTAAAGGAATAAACCAATTACCAAAACCACCTATTAAAACAGGCATAACCATGAAGAAAATCATAATAAAAGCATGAGCAGTTACAACTACATTATATAATTGATGATTTCCCATAAAAATTTGATTACCAGGTTGTGCTAATTCCATTCTGATTAAAACAGATAAAGTTGTACCAACTACACCTGAAAAAGCACCGAAAATTAAATATAGTGTACCTATATCTTTATGATT---------------CTTAAGTTCAGCGGGTAATCTTGCCTGATATCAGGTCCAATTAGA----------AAGAGCGCCTACCAGAAGCT-----CGAAAGCTTTTGACAGACTA-TCCCAAATTGG-TGTTGTCTTCTTTACTCTGCCGAAG----------------------------CAGAGCGTTCAAGCGCAG--CAACCTCCTACTACACAATGACCA--TTTGCCC-AGACCATTGCCTCACACAA--GACAGGTACACC--TCAAGGAA-AGAACAGAAAACCACCCACTGTCA---GCTGCAAAGTCGGGCCG------------AAGCCTAACATACCGCCAATAGAGGTTG-CTTCCTTTAATGTTC-TAACCGAAGTCGCCCACTCGAGCAAAGCG-ATCCAAACAGATCACTGCGTTCGAAA-GTCACACTTCATCT-TAAACACAAGAAAG--AGCGAACGTACATTTAAAGGGACTCG--CGTCTTCTCCT-----CCGAGGAGGGA---------GTCAGCGAGACACCTCACAGTCTGCCAT-----CTCTCTTCTTGACTACACAA-AAAAAGAAAGGCAAGTTTGATGTACGGACACTGATACAGGCATACTTCCAGGCATAACCCGAAAGTGCAATGTGCGTTCAAAATTTCGATGACTCACTGAATTCTGCAATTCGCATTACGTATCGCAGTTCGCAGCGTTCTTCATCGATGTGCGAGCCTAGACATCCACTGCTGAAAGTTGTTATTGA--TTAAAACCAAATACTTTCGTTTTTGGAGTATAGTTCAGTATT------AGTGT-AATGGGTTTAAAA-----GTACATCGGCAGA----------------CTACAATCA-------------------------------AGCAGC--CC-ACCTTCGTTCAGCTCTTCTCC---GAGGAGAAAAAGCACAGAACATA------------------------------------------------------------------------GTT------------ACAACGGTTCACGTGGAAAGTT--TTTTTGGTGTGG----- Pythium_chamaehyphon_OOMYA088_07 ------------------------------------------------------AATAAATGTTGGAATAATACTGGATCACCACCACCTGCTGGATCATAAAATGATGTATTAAAGTTTCTATCTGTTAATAACATAGTAATAGCACCTGAAAATACAGGTAAAGTTAATACTAAAAGAAAAGCTGTAATTAATATTGACCAAACAAATAAAGGCATTCTATGCATACTTAAACCTGGAGCTCTCATATTAAAAATAGTTGCAATAAAATTAATAGCACCTAATAATGAAGAAATACCAGATAAATGTAAACTAAAAATTGCTAAATCTACTGAAGGTCCTGAATGCGCAGCTACACTAGATAAAGGTGGATAAGCAGTCCAACCTGTACCCGCACCAGATTCTACTAATGCAGAAGATACTAATAATAATAATGATGGAGGTAATAACCAAAAACTAATATTATTTAAACGTGGAAAAGCCATATCAGGTGCACCTAACATTAAAGGTACAAACCAATTACCAAAACCACCAACTAATATAGGCATAACAACAAAGAATAACATTAATAATCCATGTGCTGTAACCATAACATTATATAATTGATGATTCCCCATAAATATTTGATTACCTGGTTGTGATAATTCTATTCTAATTAAAACAGACATAGTTGTTGCAACTATACCTGAAAAAGCACCAAAAATTAAATATAAGGTACCAATATCTTTATGATT----------------------------------CTTGTCTGATATCAGGTCCAAATGAG----------ATGTG-------------------ATACTACGAAAGACCACACAGATTCCCAAATGG-TGACACACTCCGCGCGCGATACAGA------------------------------------------------ACACCGGCTACAGACTAAC--------GAAACA-CGAGTCAAACCCGTCGACC--ATCCGGTTCACC--CATACAACACACGCCGCCC---AAACACACGCATCAGCTGCATTGCCAAAGCCGCGCACGAAACGCAGCCTAACATACCGCCAATACACAGTG-CCCAAGC--ATGCAC-GCGCCAAAGGTCGCCAGACTCGT---------------CAACAGACGCGTCCCACA-GCCCACCAGCACCC-AACGCACGCAAAGA--TACGCGTCCGACTTTCAAGGGACTTGC-TGTCCGCGAAG-------------------------GACCACAAGACACCTCACATCTGCTGCAATTCCCACACGCGCCGACTACACGACGCGAAAGGAGGCAAGTTTAGTGTACGGACACTGATACAGACATACTTCCAGGCATAACCCGAAAGTGCAATATGCGTTCAAAATTTCGATGACTCACTGAATCCTGCAATTCGCATTACGTATCGCAGTTCGCAGCGTTCTTCATCGATGTGCGAGCCTAGACATCCACTGCTGAAAGTTGCTATCTAG-TTTAAAGCAGAGACTTTCGTCCCCACAGTATGTTTCAGTTTTATAAAAAAAGA-AAGGGGTTTGACAAGTTTACAGATAGCTCAT-----CCTCCCCGAAAGAAAG---------ACAAGC-----------------------------------------------------------------------------------------------------------------------------------------CCAACAATGTCA----------------CAAACGGTTCACGTGGAAAGATGTTTTTAGGTGTGG----- Pythium_cinnamomi_OOMYA017_07 ------------------------------------------------------AATAAATGTTGATATAATACTGGATCACCCCCCCCAGAAGGATCATAAAAAGAAGTATTTAAATTTCTATCAGTTAACAACATAGTAATTGCTCCAGCTAATACAGGTAAAGTTAATAATAAAAGAAATGCTGTAATTAATACAGACCATACAAATAATGGTAATCTATGAAAACTTAAACCGGGAGCTCGCATATTATAAATAGTTGAAATAAAATTAATAGCACCTAATAATGAAGAAATACCTGTTAAATGTAAACTAAAAATTGCTAAATCTACAGAAGGTCCAGAGTGTGCTTGAACACTTGATAAAGGTGGATAAACTGTCCAACCTGTACCTGCACCAGACTCAACAATTGCTGATGAAACTAATAATAATAAAGCTGGAGGTAATAACCAAAAACTTATATTATTCATACGTGGAAAAGCCATATCAGGTGCACCAATCATTAAAGGAACAAACCAATTACCAAAACCACCAATTAAAGCAGGCATAACTAAAAAGAAAACCATTATAAAAGCATGTGCAGTTACAATTACATTATATAATTGATGATTTCCCATTAAGATTTGATTACCCGGTTGTGCTAATTCCATTCTAATTAAAAGTGATAAAGTTGTACCAACTATACCAGCAAAAGCACTAAAAATTAAATATAAAGTTCCAATATCTTTATGATT-------------------------------------------------------TTGAGATGCCACC--ACAAGCACA------------CAAGTGCGCCGCAGAGACACAGAG-TTCCCAAATGG-ATAGACCCTCGACAGCCGAAGCCGC------------------------------------------------CACCCTACTTCGCAACAACACCGC--CGGTTCA-AACGCCAAGCCTAGCACAG--CTACGGTTCACCGATCCGTACC-GCCACAGCAGG--AAGAACATCCAATAAGCGCTTTGTTCAGCCG------------AAGCCAACCATACCGCGAATCGAACACT-CCTCCATTAAACGCC-GCAGCAGACAAACCGGTCGCCGACTGGCC-ATACAGG-CAGCCTCCACAACCAGCA-ACGTCACGCTTTTC--GAGCAAAGAGAAGTACAGTTCAGTACATTTCAAGGGACTCA--CAGCCAGTCCG-------------------AAGACCGCCCGCAAGACACCTCACGTCTGGCACC-----TCCATCCACCGACTACACGGAAGGAAGAGAGCCAAGTTTGATGTACGGACACTGATACAGGCATACTCCCAGGACTAACCCGGAAGTGCAATATGCGTTCAAAATTTCGATGACTCACTGAATCCTGCAATTCGCATTACGTATCGCAGTTCGCAGCGTTCTTCATCGATGTGCGAGCCTAGACATCCACTGCTGAAAGTTGCTATCTAG-TTAAAAGCAGAGACTTTCGTCCCCACAGTATG-TTCAGTATT------ACAG--AATGGGTTTAAAAG----AGAGGCTACTAGCTCAGTTCCCCCGAGAGGGACCCAAACGCTCGCCAGTGATAGGGCCCGCCACGCAGCAGCAGCCGTCGACTTTGACATCGACAGCCGCC---GCCCAGAGCAGGCCCCCAA---------------------------------------------------------------CTAATTGGGTTG-----------------ATACGGTTCACGTGGAAAGT---TTTTTAGTGTGG----- Pythium_coloratum_OOMYA1380_08 ------------------------------------------------------AATAAATGTTGATATAATACTGGATCACCTCCACCTGATGGATCATAGAAAGATGTATTCAAGTTTCTATCTGTTAATAACATTGTAATCGCACCAGCTAATACTGGTAATGTTAATAATAATAAGAAAGCTGTAATGAATACAGACCAAACGAATAATGGTAATCTGTGGAAGCTTAAACCAGGAGCTCTCATGTTATAAATAGTTGATAAGAAATTAATAGCACCTAATAAAGATGAGATACCTGATAAGTGTAAACTAAAAATAGCTAAATCTACTGAAGGTCCTGAGTGAGCTTGTACACTTGATAAAGGTGGATAAACAGTCCAACCGGTACCAGCACCTGATTCTACAATAGCTGAAGATACTAATAATAATAATGATGGTGGTAATAACCAAAAACTAATATTATTCATTCTAGGGAAAGCCATATCTGGAGCACCTATCATTAAAGGAATAAACCAATTACCAAAACCACCTATTAAAACAGGCATAACCATGAAGAAAATCATAATAAAAGCGTGAGCAGTTACAACTACGTTATATAGTTGATGATTTCCCATAAAAATTTGATTACCAGGTTGTGCTAATTCCATTCTGATTAAAACGGATAAAGTTGTACCTACAACACCTGAAAAAGCACCGAAAATTAAATATAGAGTACCTATATCTTTATGATT---------------CTTAAGTTCAGCGGGTAGTCTTGCCTGATATCAGGTCCAATTAGA----------AAGAGCGCCATTGATAAATC-----------------AACGACTA-TCCCAAATTGG-TGTTGCCTCCTTTACTCTAACCGAAG--------------------------CTAGAGCGTTTAAGAGCAG--CAACTTCCTACTACACAATAACCA--TTTGCCC-AGACCATTGCCTCACACAA--GACAGGTACACC--TCAAGGAA-AGAACAGAAAACAACTC-CAGTCA---GCTGCAAAGTCGGGCCG------------AAGCCTAACATACCGCCAATAGAGGTTG-CTTCCTTTAATGTCC-TAACCGAAGTCGCCCACTCGAGCAAAGCG-ATCCAAACAGATCACTGCGTTCGAAA-GTCACACTTCATCT-TAAACACAAGAAAG--AGCGAACGTACATTTAAAGGGACTCG--CGTCTTCTCCT-----CCGAAGAGGGA---------GTCAGCGAGACACCTCACAGTCTGCCAT-----CTCTCTTCTTGACTACACAA-AAAAAGAAAGGCAAGTTTGATGTACGGACACTGATACAGGCATACTTCCAGGCATAACCCGAAAGTGCAATGTGCGTTCAAAATTTCGATGACTCACTGAATTCTGCAATTCGCATTACGTATCGCAGTTCGCAGCGTTCTTCATCGATGTGCGAGCCTAGACATCCACTGCTGAAAGTTGTTATTGA--TTAAAACCAAAGACTTTCGTTTTCGGAGTATAGTTCAGTATT------AGTTT-AATGGGTTTAAAA-----GTACATCGGCAGA----------------CTACAATTA-------------------------------AGCAGC--CC-ACCTTCGTTCAGCTCTCTCC------GAGAAGAGAGCACAGAACATA------------------------------------------------------------------------GTT------------ACAACGGTTCACGTGGAAAGTT--TTTTTGGTGTGG----- Pythium_dissotocum_OOMYA1449_08 ATACCAAAAGCTGGTAAAATTAAAATATAAACTTCAGGGTGACCAAAAAACCAAAATAAATGTTGATATAATACTGGATCACCTCCACCAGATGGATCATAGAAAGATGTATTCAAGTTTCTATCTGTTAATAACATTGTAATCGCACCAGCTAATACAGGTAATGTTAATAATAATAAGAAAGCTGTAATGAATACAGACCAAACGAATAATGGTAATCTGTGAAAACTTAAACCAGGAGCTCTCATATTATAAATAGTTGATAAGAAATTAATAGCACCTAATAAAGATGAGATACCTGATAAGTGTAAACTAAAAATAGCTAAATCTACTGAAGGTCCTGAGTGAGCTTGAACACTAGATAAAGGTGGATAAACAGTCCAACCAGTACCAGCACCCGATTCTACAATAGCTGAAGATACTAATAATAATAATGATGGTGGTAATAACCAAAAACTAATATTATTCATTCTAGGAAAAGCCATATCTGGAGCACCTATCATTAAAGGAATAAACCAATTACCAAAACCACCTATTAAAACAGGCATAACCATGAAGAAAATCATAATAAAAGCGTGAGCAGTTACAACTACATTATATAGTTGATGATTTCCCATAAAAATTTGATTACCAGGTTGTGCTAATTCCATTCTGATTAAAACGGATAAAGTTGTACCTACAACACCTGAAAAAGCACCGAAAATTAAATATAGAGTACCTATATCTTTATGATTTGTTGAAAAAGCCATCTTAAGTTCAGCGGGTAGTCTTGCCTGATATCAGGTCCAATTAGA----------AAGAGCGCCATTGATAAATC-----------------AACGACTA-TCCCAAATTGG-TGTTGCCTCCTTTACTCTAACCGAAG--------------------------CTAGAGCGCTTAAGAGCAG--CAACTTCCTACTACACAATAACCA--TTTGCCC-AGACCATTGCCTCACACAA--GACAGGTACACC--TCAAGGAA-AGAACAGAAAACAACTC-CAGTCA---GCTGCAAAGTCGGGCCG------------AAGCCTAACATACCGCCAATAGAGGTTG-CTTCCTTTAATGTCC-TAACCGAAGTCGCCCACTCGAGCAAAGCG-ATCCAAACAGATCACTGCGTTCGAAA-GTCACACTTCATCT-TAAACACAAGAAAG--AGCGAACGTACATTTAAAGGGACTCG--CGTCTTCTCCT-----CCGAAGAGGGA---------GTCAGCGAGACACCTCACAGTCTGCCAT-----CTCTCTTCTTGACTACACAA-AAAAAGAAAGGCAAGTTTGATGTACGGACACTGATACAGGCATACTTCCAGGCATAACCCGAAAGTGCAATGTGCGTTCAAAATTTCGATGACTCACTGAATTCTGCAATTCGCATTACGTATCGCAGTTCGCAGCGTTCTTCATCGATGTGCGAGCCTAGACATCCACTGCTGAAAGTTGTTATTGA--TTAAAACCAAAGACTTTCGTTTTCGGAGTATAGTTCAGTATT------AGTTT-AATGGGTTTAAAA-----GTACATCGGCAGA----------------CTACAATTA-------------------------------AGCAGC--CC-ACCTTCGTTCAGCTCTCTCC------GAGAAGAGAGCACAGAACATA------------------------------------------------------------------------GTT------------ACAACGGTTCACGTGGAAAGTT--TTTTTGGTGTGGTAATG Pythium_helicoides_OOMYA1420_08 ------------------------------------------------------AATAAATGTTGGAATAAAACTGGATCACCCCCTCCTGCTGGATCATAAAAAGATGTATTAAAGTTTCTATCAGTTAATAACATTGTAATAGCACCAGAAAATACAGGTAAAGTTAATACTAAAAGAAAAGCTGTAATTAATATTGACCAAACAAATAAAGGCATTCTATGCATACTTAAACCAGGAGCTCTCATATTAAATATAGTTGCAATAAAATTAATAGCACCTAATAATGAAGAAATACCTGATAAATGTAAACTAAAAATAGCTAAATCTACTGAAGGTCCAGAGTGTGCTGCTACACTAGATAATGGTGGATAAGCTGTCCAACCTGTACCAGCACCAGATTCTACTAATGCAGAAGATACTAATAATAATAATGATGGAGGTAATAACCAAAAACTAATATTATTTAAACGAGGAAAAGCCATATCAGGTGCACCTAACATTAAAGGTACAAACCAATTACCAAAACCACCAACTAATATAGGCATAACAACAAAGAATAACATTAATAATCCATGTGCTGTAACCATAACATTATATAATTGATGATTTCCCATAAATATTTGATTACCTGGTTGTGATAATTCTATTCTAATTAAAACAGACATAGTTGTTGCAACTATACCTGAAAAAGCACCAAAAATTAAATATAAAGTACCTATATCTTTATGATT----------------------------------CTTGTCTGATATCAGGTCCAAATGAG----------ATACGCCCT----------------CAAAACAAGAAGACGTACAAATTCCCAAATGA-TGACACACTCCACGCACGATACAGA------------------------------------------------ACACCGGATAAAAACAGACAC----GAGAAACG-CATATAAAACCCATCGACC--ATCCGGTTCACC--CATACAGC-ACCACAGCCC---AAACACACGCATCAGCTGCATTGTCAAAGCCGCGC---GAACGCAGCCTAACATACCGCCAATACACAGTG-CCCAAGC--ATGCAC-GCGCCAAAGGTCGCCAGACTCGT---------------CAACAGACGCGTCCCACA-GCCCACCGGCACCC-AACGCACGCAAAGA--TACGCGTCCGACTTTCAAGGGACTTGA-CCGACGCATCA-----ACAAAGACACA---------ACAATCAAGACACCTCACATCTGCCACAAATT-CCAACGCGCCGACTACACGA-CGCAAAGGAGGCAAGTTTAGTGTACGGACACTGATACAGACATACTTCCAGGCATAACCCGAAAGTGCAATATGCGTTCAAAATTTCGATGACTCACTGAATCCTGCAATTCGCATTACGTATCGCAGTTCGCAGCGTTCTTCATCGATGTGCGAGCCTAGACATCCACTGCTGAAAGTTGCTATCTAG-TTCAAAGCAGAGACTTTCGTCCCCACAGTATGTTTCAGTTAT----CAAAGAG-AATGGGTTTGACAAGTTTACAGATAGCTCGCACGCCTCCCCCCAAAACAGAGAGAACACGCACAAGC-----------------------------------------------------------------------------------------------------------------------------------------CCAACCATGTCA----------------CAAACGGTTCACGTGGAAAGATG-TTTTAGGTGTGG----- Pythium_litorale_OOMYA1379_08 ------------------------------------------------------AATAAGTGTTGGAATAATACAGGATCACCTCCACCAGCTGGATCGTAAAAAGAAGTATTAAAATTTCTATCAGTTAATAACATTGTAATAGCACCAGAAAATACTGGTAAAGTAATTACTAAAAGAAAAGCTGTAATTAATATAGACCATACAAATAAAGGCATTCTATGCATACTTAGTCCAGGAGCTCTCATATTAAAAATAGTTGCAATAAAATTAATAGCACCTAATAAAGATGAAATACCAGATAAATGTAAACTAAAAATAGCTAAATCTACTGAAGGTCCCGAGTGAGCAGCTACGCTTGATAAAGGTGGATATGCTGTCCAACCTGTACCAGCACCAGATTCTACTAAAGCAGAAGATACTAATAATAATAATGATGGAGGTAATAACCAAAAACTAATATTATTTAAACGTGGAAAAGCCATATCAGGAGCACCTAACATTAAAGGAACAAACCAATTACCAAAACCACCAACTAATATAGGCATAACAACAAAGAATAACATTAATAATCCATGTGCTGTAACCATAACATTATATAATTGATGATTTCCCATAAAAATTTGATTACCTGGTTGTGATAATTCTATTCTAATTAAAACAGACATAGTTGTTGCAACTATACCTGAAAAAGCACCAAAAATTAAATATAAAGTACCAATATCTTTATGATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pythium_marsipium_OOMYA235_07 ------------------------------------------------------AATAAATGTTGATATAATACTGGATCACCTCCACCTGAAGGATCGTAAAATGATGTATTTAAATTTCTATCAGTTAATAACATAGTTATAGCACCTGCTAATACTGGTAATGTTAATAGTAATAAAAAAGCTGTAATAAAAATTGCCCAAACAAATAAAGGCAATCTATGAAAACTTAAACCAGGTGCTCTCATATTATAGATAGTTGATAAAAAATTAATTGCACCTAATAATGATGATATACCTGATAAATGTAAACTAAAAATAGCTAAATCTACTGAAGGACCTGAATGTGCTTGTACACTCGATAAAGGAGGATATACAGTCCATCCTGTACCAGCACCTGATTCAACAATAGCTGAAGATACTAATAATAATAAAGATGGTGGTAATAACCAAAAACTAATATTATTCATACGTGGAAAAGCCATATCAGGTGCTCCTATCATTAAAGGAACAAACCAATTACCAAAACCACCTATTAAAACAGGCATAACCATAAAAAAAATCATAATAAATGCATGTGCGGTTACAACTACATTATATAAATGATGATTACCTTCAAAAATTTGATTACCGGGTTGTGCTAATTCCATTCTAATTAAAACTGATAATGTAGTACCAACTACACCTGAAAAAGCACCAAAAATTAAATATAAAGTACCAATGTCTTTATGATT------------------------AGCGGGTAATCTTGTCTGATATCAGGTCCAATTGAGATACACACGCACGCATGCCAACAATAAATTGCCAACACACACACGAGGTACAGTATTTCCCAAATGG-AATCTCTCTACCCACACATACCATCCACGCCCATAAATGGACACAAACAGCAGCGCAGAATCCGATCGCAA--ACAACGCCTCCGAAATACTAAACAAACAGCACA-AGGTCTCAAGCCCACAACC--GAACGGTACACC--TCAAAGCAAAAGACGGAAAAA-CAACACTCACAAACGCTAATTTGTCCAGCCAC--------AATGAGCCTAACATACCGCGAAGTAAGGTGC-CCTCCAT-AATGTCT-C{CT}GCCAAAGTCGCCGTCGACTGCAAGCGA-GTCCA---AGACCGCCGCGTTCAATCCAAAGCGCTCCGCAA-AAGGCAAATAGAA---AGATCGTGTCGCTTTCAAAGGACTCG--CGCCAAAT{CT}CT------A{AT}{CT}AAATAAA------ACCCGGCGCGAGACACTTCACATCTGCACGT-----CTCCCCACCGGACTACACCG-ACAAAGAGAGGCAAGGTTGAGTTACGGACACTGATACAGACATACTTCCAGGCATAACCCGAAAGTGCAATATGCGTTCAAAATTTCGATGACTCACTGAATTCTGCAATTCGCATTACGTATCGCAGTTCGCAGCGTTCTTCATCGATGTGCGAGCCTAGACATCCACTGCTGAAAGTTGTTATCTAG-TTAAAAGCAAAGACTTTCGTCCTCACAGTATACATCAGTTGT------TTAGGTAAGGGGTTTGAAAA---A{AT}TAAGTCAGCCGC-------------CGCGCACACGCTCGCGTCGCACA------AGGCAACACAAACAGGCACG--ACAACCTTCGATCAGCCGAGCC-----------------CACACGC-----CCACAACACACATACATGCATCGCA---------GACACGCGT--------CACGGCGCTAATCGGGTAA-----------------CTACAGTTCACGTGGAAAGT---TTTTAGGTGTGG----- Pythium_middletonii_OOMYA177_07 ------------------------------------------------------AATAAATGTTGATATAATACAGGATCACCTCCACCTGATGGATCATAAAAAGATGTATTTAAATTTCTATCTGTTAATAACATTGTAATTGCACCAGCTAAAACAGGTAAAGTTAATAATAATAAAAAAGCTGTAATAAATATAGCCCAAACAAATAAAGGTAATCTATGAAAACTTAAACCAGGAGCTCTCATATTATAAATAGTAGATAAAAAATTAATTGCACCTAATAAAGATGATATACCTGATAAATGTAAACTGAAAATCGCTAAATCTACCGAAGGACCAGAGTGTGCTTGTACGCTTGATAAAGGTGGATATACAGTCCAACCTGTACCAGCACCTGATTCAACGATAGCTGAAGATACTAATAATAATAAAGATGGTGGTAATAACCAAAAACTAATATTATTCATACGAGGAAAAGCCATATCTGGTGCACCAATCATTAAAGGTACAAACCAATTACCAAAACCACCTATTAAAACAGGCATAACCATAAAAAAAATCATAATAAATGCATGAGCAGTAACAACAACATTATATAAATGATGATTACCTTCAAAAATTTGATTACCAGGTTGTGCTAATTCCATTCTAATTAAAACAGATAATGTAGTACCAACTACACCTGAAAAAGCACCAAAAATTAAATATAAAGTACCAATGTCTTTATGATT------------------------AGCGGGTAGTCTTGTCTGATATCAGGTCCAAGTGAGATAC------ACACACGCC----------------TTGCAGCGCGCAGTACAATGTTTCCCAAATGA-TACCCTTCTACCTACGTACGACATAA--AGCC------------------ACACATAGACGCTAACCACAG--AAATCGAC-ACACTCTACT-AACACACAATACT-TGGGTTCAAGCCCACAACC---GACAGTACACC--TCAAAGCA-AAGACGAAACAACACACTCACT---ACGCAACATTGTCGAGCCG------------AAGCCTAACGTACCGCGAAATGAGGGTT-CTTCCAT--ATGTCT-CTACCAAAGTCGCTATCGACTGCAGGCGA-TCCCA---AGACCGCCGCGTTCAAAT-GATGCGCTCCGCAG-AAAGC-AATAGAA---AGATCGTGTCCATTTAAAAGGACTCGCGCGCCTAGTACA---------ATAAAGA---CTGACGTAGCGCGAGACACTTCACATCTGCGCA------CTCCAAGCCGGACTACACCG-ACAAAGAGAGGCAAGTTTGATTTACGGACACTGATACAGACATACTTCCAGGTATAACCCGAAAGTGCAATATGCGTTCAAAATTTCGATGACTCACTGAATTCTGCAATTCGCATTACGTATCGCAGTTCGCAGCGTTCTTCATCGATGTGCGAGCCTAGACATCCACTGCTGAAAGTTGTTATCTAG--TAAAAGCAAAGACTTTCGTCCTCACAGTATGAATCAGTAAT------AAAGA-AATGGGTTTGAAAG---AATAAGTCAGCCAC-------------AATGCGCAATAAAGCACAAC-------------------------------GCGACCTTCGATCAGCCGACCCACGCAGTCGACACCATGCGCACGATATAAATACAGCACACA---------------CAGCGACAACACACGT--------CACGGCGCGAATCTCGTA------------------AGACAGTTCACGTGGAAAGTA--TTTTTGGTGTGG----- Pythium_pectinolyticum_OOMYA1615_08 ------------------------------------------------------AATAAATGTTGATATAATACTGGATCACCACCACCTGATGGATCGTAGAAAGATGTATTTAAATTTCTATCTGTTAAAAGCATTGTAATAGCTCCTGCTAATACTGGTAATGTTAATAATAATAAGAAAGCTGTAATAAATACTGACCAAACAAATAAAGGTAATCTATGGAAACTTAAACCTGGAGCTCTCATATTATAAATAGTTGATAAAAAATTAATAGCACCTAATAATGAAGAAATACCAGATAAATGTAAACTAAAAATAGCTAAATCTACTGAAGGTCCTGAGTGTGCTTGTACACTTGATAAAGGAGGGTACACTGTCCAACCAGTACCCGCACCTGATTCTACAATAGCAGAAGATACTAATAATAATAATGAAGGAGGTAATAACCAAAAACTAATATTATTCATTCTAGGAAAAGCCATGTCAGGTGCTCCTATCATTAAAGGAATAAACCAGTTACCGAAACCACCTATTAAAACAGGCATAACCATGAAAAAAATCATAATGAAAGCATGAGCAGTTACAACAACATTATATAATTGATGGTTTCCCATAAAAATTTGATTACCTGGTTGTGCTAATTCCATTCTAATTAAAACAGATAAAGTTGTACCAACTACACCTGAAAAAGCTCCAAAAATTAAATATAGAGTACCTATATCTTTATGATT---------------CTTAAGTTCAGCGGGTAGTCTTGCCTGATATCAGGTCCAATTAGA----------AAGAGCGCCAATGATAAATC-----------------AAAGACTA-TCCCAAATTGG-TGTTGCCTCCTTTACCCTATCCGAGA--------------------------ACAGGGCGTTCAAGAGCAG--CAACTTCCTACTACACAATAACCA--TTTGCCT-AGACCATTGCCTCACACAA--GACAGGTACACC--TCAAGGAA-AGAACAGAAAACAACACACCGTCA---GCTGCAAAGTCGGGCCG------------AAGCCTAACATACCGCCAATAG-GGTTG-CTTCCTTTAATGTCC-TAACCGAAGTCGCCTACTCGAGCAAAGCG-ATCCAAACAGATCACTGCGTTCGAAA-GTCACACTTCTACT-TAAACACAAGAAAG--AGCGAACGTACATTTAAAGGGACTCG--CGTCTTCTCCT-----CCGAAGAGGGA---------GTCAGCGAGACACCTCACAGTCTGCCAT-----TTCTAATCTTGACTACACAA-AAAAAGAAAGGCAAGTTTGATGTACGGACACTGATACAGGCATACTTCCAGGCATAACCCGAAAGTGCAATGTGCGTTCAAAATTTCGATGACTCACTGAATTCTGCAATTCGCATTACGTATCGCAGTTCGCAGCGTTCTTCATCGATGTGCGAGCCTAGACATCCACTGCTGAAAGTTGTTATTGA--TTAAAACCAAAGACTTTCGTTTTCGGAGTATAGTTCAGTATT------AGTTT-AATGGGTTTAAAA-----GTACATCGGCAGT----------------CTACAATTA-------------------------------AGCAGG--CC-ACCTTCGTTCAGCTCTCCC--------GAAAGAGAGCACAGAACATA------------------------------------------------------------------------TTT------------ACAACGGTTCACGTGGAAAGTT--TTATGG-TGTGG----- Pythium_rostratifingens_OOMYA1699_08 ------------------------------------------------------AATAAATGTTGATATAATACTGGATCACCTCCACCTGATGGATCATAAAAAGATGTATTTAAATTTCTATCAGTTAATAACATAGTAATAGCACCTGCTAATACTGGTAAAGTTAATAATAATAAAAATGCTGTAATAAATATAGACCAAACAAATAAAGGTAATCTATGAAAACTTAAACCAGGAGCTCTCATATTATAAATAGTTGATAAGAAATTAATAGCACCTAATAATGATGATATACCTGATAAATGTAAACTAAAAATAGCTAAATCTACTGATGGTCCTGAATGGGCTTGAACACTTGATAAAGGTGGGTATACTGTCCAACCTGTACCAGCACCTGATTCAACAATAGCTGATGATACTAATAATAATAAAGATGGAGGTAATAACCAAAAACTAATATTATTCATACGAGGAAAAGCCATATCTGGAGCACCAATCATTAAAGGTACAAACCAGTTACCAAAACCTCCAATTAAAACTGGCATAACCATAAAAAAAATCATAATAAATGCATGAGCAGTAACAACAACATTATATAAATGATGGTTACCTTCAAAAATTTGATTACCAGGTTGTGCTAATTCCATTCTAATTAAAACAGATAATGTAGTACCTACTACACCAGAAAAAGCACCAAAAATTAAATATAAAGTACCAATGTCTTTATGATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACACACC--TCCAAGCG-AAAACGAAAAGACACACACCTC---TCACAACATTGTCCAGCCG-----------AAAGCCTAACGTACCGCGAAAAGGAGGTTGCTTCCAC--ATGTTC-TCGCCAAGGTCGTAAACATCTGCAGGCAATCGACG---AGATTGCCGCGTTCAAAA-TACACGCCCTTGAGCAACGC-AATAGAAA--AACCGGAGTCCATTTCAAAGGACTCGTGCACTCTCGTCATCTACCCGAAGATAGATCACCAGCATGGCGCGAGACACTTCACCTCTGCTCCTT----CTCCAAGCCGGACTACACCG-ACGAAGAGAGGCAAGTTTAATGTACGGACACTGATACAGACATACTTCCAGGCATAACCCGGAAGTGCAATATGCGTTCAAAATTTCGATGACTCACTGAATTCTGCAATTCGCATTACGTATCGCAGTTCGCAGCGTTCTTCATCGATGTGCGAGCCTAGACATCCACTGCTGAAAGTTGTTATCTAG--TAAAAGCAAGGACTTTCGTCCTCACAGTATA-ATCAGTACG------TCACG-TATGGTTTGAAAGA---CATAAATCAGCCGCT----TGCTCGAGCCATTGCAGCAACGTGCGACAACGCGCACATCGCTCCGATAGCGAACGC--CCGACCTTCGTTTAGCCGACTCCG---ATCGACAGCGTGTCCAGGA-----CGACGCCCGACAATATCCGATCCGATCGAATATCGACAAGCGCTTCCCAGACGCACCACCAATCGCGCCTGCCTTAACTTGTTTGCTTAACGGTTCACGTGGATAG----TTTTAGGTGTGG----- Pythium_sp_nov_OOMYA1344_08 ------------------------------------------------------AATAAATGTTGATATAATACTGGATCACCTCCACCTGATGGATCATAAAAAGATGTGTTTAAATTTCTATCGGTTAATAACATTGTAATTGCACCTGCTAATACTGGTAATGTCAATAATAATAAAAAAGCTGTAATAAATACTGACCAAACGAATAGAGGTAATCTATGAAAGCTTAAACCTGGAGCTCTCATATTATAAATAGTTGATAAAAAGTTAATAGCACCTAATAATGATGAAATACCTGATAAGTGTAAACTAAAAATAGCTAAATCAACTGAAGGTCCTGAGTGTGCTTGTACACTTGATAAAGGTGGATAAACAGTCCAACCAGTACCAGCACCTGATTCTACAATAGCTGAAGATACTAATAATAATAATGATGGTGGTAATAACCAAAAACTAATATTATTCATTCTAGGGAAAGCCATATCAGGGGCACCTATCATTAAAGGAATAAACCAATTACCAAAACCACCTATTAAAACAGGCATAACCATGAAGAAAATCATAATAAAAGCATGAGCAGTTACAACAACATTATATAGTTGATGATTTCCCATAAAAATTTGATTACCAGGTTGTGCTAATTCCATTCTAATTAAAACAGACAAAGTTGTACCAACTACACCTGAAAAAGCACCGAAAATTAAATATAGAGTACCTATATCTTTATGATT---------------CTTAAGTTCAGCGGGTAGTCTTGCCTGATATCAGGTCCAATTAGA----------AAGAGCGCCAATGATAAATC-----------------AATGACTA-TCTCAAATTGG-TGTTGCCTCCTTTACTCTGCCGAAA----------------------------CAGAGCGTTCAAGCGCAG--CAACTTCCTACTACACAATAACCA--TTTGCCC-AGACCATTGCCTCACACAA--GACAGGTACACC--TCAAGGAA-AGAACAGAAAACCACACACTGTCA---GCTGCAAAGTCGGGCCG------------AAGCCTAACATACCGCCAATAGAGGTTG-CTTCCTTTAATGTCC-TAACCGAAGTCGCCCACTCGAGCAAAGCG-ATCCAAACAGATCACTGCGTTCGAAA-GTCACACTTCATCT-TAAACACAAGAAAG--AGCGAACGTACATTTAAAGGGACTCG--CGTCTTCTCCT-----CCGAGGAGGGA---------GTCAGCGAGACACCTCACAGTCTGCCAT-----CTCTCTTCTTGACTACACAA-AAAAAGAAAGGCAAGTTTGATGTACGGACACTGATACAGGCATACTTCCAGGCATAACCCGAAAGTGCAATGTGCGTTCAAAATTTCGATGACTCACTGAATTCTGCAATTCGCATTACGTATCGCAGTTCGCAGCGTTCTTCATCGATGTGCGAGCCTAGACATCCACTGCTGAAAGTTGTTATTGA--TTAAAACCAAAGACTTTCGTTTTCGGAGTATAGTTCAGTATT------AGTTT-AATGGGTTTAAAA-----GTACATCGGCAGA----------------CTACAATTA-------------------------------AGCAGC--CC-ACCTTCGTTCAGCTCTCCC--------GAGAGAGAGCACAGAACATA------------------------------------------------------------------------GTT------------ACAACGGTTCACGTGGAAAGTT--TTTTTGGTGTGG----- Pythium_sp_nov_OOMYA1646_08 ------------------------------------------------------AATAAATGTTGGTATAATACTGGATCACCTCCACCAGAAGGGTCATAAAAAGAAGTATTTAAATTTCTATCAGTTAATAACATAGTAATTGCACCAGCTAATACAGGTAATGTTAATAATAATAAAAAAGCTGTAATAAATATAGCCCAAACAAATAAAGGTAATCTATGAAAACTTAAACCAGGAGCTCTCATATTATAAATAGTTGATAAAAAATTAATAGCACCTAATAATGAAGATATACCTGATAAATGTAAACTAAAAATCGCTAAATCTACAGAAGGACCTGAGTGAGCTTGTACACTAGATAATGGAGGATATACAGTCCAACCAGTACCAGCACCTGATTCAACAATAGCTGATGATACTAATAATAATAAAGATGGAGGTAATAACCAAAAACTAATATTATTCATACGAGGAAAAGCCATATCTGGAGCACCAATCATTAAAGGTACAAACCAGTTACCAAAACCCCCAATTAAAACAGGCATAACCATAAAAAAAATCATAATAAATGCGTGAGCAGTAACAACAACATTATATAAATGATGGTTACCTTCAAAAATTTGATTACCAGGTTGTGCTAATTCCATTCTAATTAAAACAGATAATGTAGTACCAACTACACCTGAAAAAGCACCAAAAATTAAATATAAAGTACCTATGTCTTTATGATT------------------------AGCGGGTAGTCTTGTCTGATATCAGGTCCAATTGAGATACACAC--GCACACGCC------------CGAAAGCGTACGCGCAGTACAATGTTTCCCAAATGG-AGTCTCTCTACCCACACATA------------------------------AAGTGCGGAATCAAACCACAG--AAATCGACACACCTCTACTAACAAAGCGAGACACAAGGTTCAAGCCCACAACC--GAACAGTACACC--TCAAAGCG-AAAACGGAAT---CCACACACTGAAACGCAACATTGTCGAGCCG------------AAGCCTAACGTACCGCGAATAGTGGTTT-CTTCCAT--ATGTCT-CCGCTGAAGTCGCTGTCGACTGCGAGCGA-TCCGA---GGACCGCCGCGTTCGAGA-TACGCGCTCCGTAG-AAAGCAAATAGAA---AGATCGTGTCGTTTTAAAGGGACTCG--CAGCAAGCGTATGCATTTTACAACACA---CACACACGCCGCGAGACACCTCACATCTGCACATG----CTCCAAGCCGGACTACACCG-ACAAAGAGAGGCAAGGTTGATGTACGGACACTGATACAGACATACTTCCAGGTATAACCCGAAAGTGCAATATGCGTTCAAAATTTCGATGACTCACTGAATTCTGCAATTCGCATTACGTATCGCAGTTCGCAGCGTTCTTCATCGATGTGCGAGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTTTAAAGCAAAGACTTTCGTCCTCACAGTATTGATCAGTTTT------TAAAGTAAGGGGTTTGAAAG---TATAAGTCAGCCGA-------------AGCGCGCATATA-------------------------AATACTTGCGCA--ACGACCTTCGATCAGCCAAAGC------TCCTCGCATTGCTTGCACTATCACTGCATTACACAGTAACGAAT--------------ACAAACACGCTCGAAACCCGGCGCGAATCGGATAC-----------------AAACAGTTCACGTGGAAAGTT--TTTTAGGTGTGG----- Pythium_sp_nov_OOMYA1702_08 ------------------------------------------------------AATAAATGTTGATATAATACTGGATCACCTCCACCTGATGGATCGTAGAAAGATGTATTTAAATTTCTATCTGTTAAAAGCATTGTAATAGCTCCTGCTAATACTGGTAATGTTAATAATAATAAGAAAGCTGTAATAAATACTGACCAAACAAATAAAGGTAATCTATGGAAACTTAAACCTGGAGCTCTCATATTATAAATAGTTGATAAAAAATTAATAGCACCTAATAATGAAGAAATACCAGATAAATGTAAACTAAAAATAGCTAAATCTACTGAAGGTCCTGAGTGTGCTTGTACACTTGATAAAGGAGGGTACACTGTCCAACCTGTACCAGCACCTGATTCTACAATAGCAGAAGATACTAATAATAATAATGAAGGAGGTAATAACCAAAAACTAATATTATTCATTCTAGGAAAAGCCATGTCAGGTGCTCCTATCATTAAAGGAATAAACCAGTTACCGAAACCACCTATTAAAACAGGCATAACCATGAAAAAAATCATAATGAAAGCATGAGCAGTTACAACAACATTATATAATTGATGGTTTCCCATAAAAATTTGATTACCTGGTTGTGCTAATTCCATTCTAATTAAAACAGATAAAGTTGTACCAACTACACCTGAAAAAGCTCCAAAAATTAAATATAGAGTACCTATATCTTTATGATT---------------CTTAAGTTCAGCGGGTAGTCTTGCCTGATATCAGGTCCAATTAGA----------AAGAGCGCCAATGATAAATC-----------------AAAGACTA-TCCCAAATTGG-TGTTGCCTCCTTTACCCTATCCGAGA--------------------------ACAGAGCGTTCAAGAGCAG--CAACTTCCTACTACACAATAACCA--TTTGCCT-AGACCATTGCCTCACACAA--GACAGGTACACC--TCAAGGAA-AGAACAGAAAACAACACACCGTCA---GCTGCAAAGTCGGGCCG------------AAGCCTAACATACCGCCAATAG-GGTTG-CTTCCTTTAATGTCC-TAACCGAAGTCGCCTACTCGAGCAAAGCG-ATCCAAACAGATCACTGCGTTCGAAA-GTCACACTTCTACT-TAAACACAAGAAAG--AGCGAACGTACATTTAAAGGGACTCG--CGTCTTCTCCT-----CCGAAGAGGGA---------GTCAGCGAGACACCTCACAGTCTGCCAT-----TTCTAATCTTGACTACACAA-AAAAAGAAAGGCAAGTTTGATGTACGGACACTGATACAGGCATACTTCCAGGCATAACCCGAAAGTGCAATGTGCGTTCAAAATTTCGATGACTCACTGAATTCTGCAATTCGCATTACGTATCGCAGTTCGCAGCGTTCTTCATCGATGTGCGAGCCTAGACATCCACTGCTGAAAGTTGTTATTGA--TTAAAACCAAAGACTTTCGTTTTCGGAGTATAGTTCAGTATT------AGTTT-AATGGGTTTAAAA-----GTACATCGGCAGT----------------CTACAATTA-------------------------------AGCAGC--CC-ACCTTCGTTCAGCTCTCCC--------GAAAGAGAGCACAGAACATA------------------------------------------------------------------------TTT------------ACAACGGTTCACGTGGAAAGTT--TTATGG-TGTGG----- Pythium_sp._TypeI -------------------------------------------------ACCAAAATAAATGTTGATATAATACTGGATCACCTCCACCTGATGGATCGTAGAAAGATGTATTTAAATTTCTATCTGTTAAAAGCATTGTAATAGCTCCTGCTAATACTGGTAATGTTAATAATAATAAGAAAGCTGTAATAAATACTGACCAAACAAATAAAGGTAATCTATGGAAACTTAAACCTGGAGCTCTCATATTATAAATAGTTGATAAAAAATTAATAGCACCTAATAATGAAGAAATACCAGATAAATGTAAACTAAAAATAGCTAAATCTACTGAAGGTCCTGAGTGTGCTTGTACACTTGATAAAGGAGGGTACACTGTCCAACCTGTACCAGCACCTGATTCTACAATAGCAGAAGATACTAATAATAATAATGAAGGAGGTAATAACCAAAAACTAATATTATTCATTCTAGGAAAAGCCATGTCAGGTGCTCCTATCATTAAAGGAATAAACCAGTTACCGAAACCACCTATTAAAACAGGCATAACCATGAAAAAAATCATAATGAAAGCATGAGCAGTTACAACAACATTATATAATTGATGGTTTCCCATAAAAATTTGATTACCTGGTTGTGCTAATTCCATTCTAATTAAAACAGATAAAGTTGTACCAACTACACCTGAAAAAGCTCCAAAAA-TAAATATAGAGTAC----------------------------------------------------------------------------------------------CAATGATAAATC-----------------AAAGACTA-TCCCAAATTGG-TGTTGCCTCCTTTACCCTATCCGAGG--------------------------ACAGAGCGTTCAAGAGCAG--CAACTTCCTACTACACAATAACCA--TTTGCCT-AGACCATTGCCTCACACAA--GACAGGTACACC--TCAAGGAA-AGAACAGAAAACAACACACCGTCA---GCTGCAAAGTCGGGCCG------------AAGCCTAACATACCGCCAATAG-GGTTG-CTTCCTTTAATGTCC-TAACCGAAGTCGCCTACTCGAGCAAAGCG-ATCCAAACAGATCACTGCGTTCGAAA-GTCACACTTCTACT-TAAACACAAGAAAG--AGCGAACGTACATTTAAAGGGACTCG--CGTCTTCTCCT-----CCGAAGAGGGA---------GTCAGCGAGACACCTCACAGTCTGCCAT-----TTCTAATCTTGACTACACAA-AAAAAGAAAGGCAAGTTTGATGTACGGACACTGATACAGGCATACTTCCAGGCATAACCCGAAAGTGCAATGTGCGTTCAAAATTTCGATGACTCACTGAATTCTGCAATTCGCATTACGTATCGCAGTTCGCAGCGTTCTTCATCGATGTGCGAGCCTAGACATCCACTGCTGAAAGTTGTTATTGA--TTAAAACCAAAGACTTTCGTTTTCGGAGTATAGTTCAGTATT------AGTTT-AATGGGTTTAAAA-----GTACATCGGCAGT----------------CTACAATTA-------------------------------AGCAGG--CC-ACCTTCGTTCAGCTCTCCC--------GAAAGAGAGCACAGAA------------------------------------------------------------------------------------------------------------------------------------ Pythium_sp._TypeII -----------------------------AACTTCTGGATGACCAAAAAACCAAAATAAATGTTGATATAATACAGGATCACCTCCACCTGATGGATCATAAAATGAAGTATTTAAATTCCTATCTGTTAATAACATAGTGATTGCACCAGCTAAAACAGGTAATGTTAATAATAATAAGAAAGCTGTAATAAATATAGCCCAAACAAATAAAGGTAATCTATGAAAGCTTAAACCTGGAGCTCTCATATTATAAATTGTTGATAAAAAATTTATTGCACCTAATAATGAAGAAATACCTGATAAATGTAAACTAAAAATAGCTAAATCTACTGAAGGGCCTGAATGAGCTTGAACACTTGATAAGGGTGGATATACAGTCCAACCTGTACCAGCACCTGATTCAACAATAGCTGATGATACTAACAATAATAATGATGGAGGTAATAACCAAAAACTAATATTATTCATACGAGGAAAAGCCATATCAGGTGCTCCTATCATTAAAGGTACAAACCAATTACCAAAACCGCCAATTAAAACAGGCATAACCATAAAAAAAATCATAATAAAAGCATGTGCAGTAACTACTACATTATATAAATGATGATTACCTTCAAAAATTTGATTACCAGGTTGTGCTAATTCCATTCTAATTAAAACAGATAAAGTAGTACCTACTACACCTGAAAAAGCA------------------------------------------------------------------------------------------------------------ACACACGAC------------CCGAAAACGAGCCGCAGTACAGTATTTCCCAAAAGGAAACCCCTCTACCCACGCA--------------------------------ACGCGCAGAATCCAATAGCAAACACACCGCCTCCGAGCTACT-AACACACAGCACA-AGCACTCAAGCCCACAACC--CCACAGTACACC--TCAAAGCCAAAGACGGAAATACACACGCCCACAAACGCAACATTGTTCAGCCAC--------AAAGAGCCTAACATACCGCGAAGTGAGGTGC-CCTCCAT-AATGTCCAAAGCCAAGGTCGCCGGAGACTGCAAACGA-GTACA---AGACCGATGCGTTCAAACCAAAGCGAGTTGCTA-AAGGCAAATAGAAG--AGATCGTGTCGTTTCAAAAGGACTCG--CACCAT-----------TGCAGAGGCA--------ACGACGCGAGACGCTTCAGATCTGCTCGT-----CTCCAAACCGGACTACACCG-ACTAAGAGAGGCAAGGTTGATGTACGGACACTGATACAGACATACTTCCAGGCATAACCCGAAAGTGCAATATGCGTTCAAAATTTCGATGACTCACTGAATTCTGCAATTCGCATTACGTATCGCAGTTCGCAGCGTTCTTCATCGATGTGCGAGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTTAAAAGCAAAGACTTTCGTCCTCACAGTATACATCAGTAAT------AAAGG-AAGGGGTTTGAAAG---AGTAAGTCAGCCCGC----CCCGCCGCAAGACACACGCGCGCTCCGAAAAGCACGCACACACTCGCAGCAGAAAGC--AAAGCCTTCGATCAGCCGAGCC-------------CGCGCACACGC-----CGATACAATCTAATTAAAAATCATACCAGG---CAGCACGCGT--------CACGGCGCTAA----------------------------------------------------------------- Pythium_sp._TypeIIIe ---------------------------------------------------CAAAATAAATGTTGATATAATACTGGATCACCTCCACCTGATGGATCATAGAAAGATGTATTTAAGTTTCTATCTGTTAATAACATTGTAATCGCACCAGCTAATACTGGTAATGTTAATAATAATAAGAAAGCTGTAATGAATACAGACCAAACGAATAATGGTAATCTGTGGAAGCTTAAACCAGGAGCTCTCATGTTATAAATAGTTGATAAGAAATTAATAGCACCTAATAAAGATGAGATACCTGATAAGTGTAAACTAAAAATAGCTAAATCTACTGAAGGTCCTGAGTGAGCTTGTACACTTGATAAAGGTGGATAAACAGTCCAACCAGTACCAGCACCTGATTCTACAATAGCTGAAGATACTAATAATAATAATGATGGTGGTAATAACCAAAAACTAATATTATTCATTCTAGGGAAAGCCATATCTGGAGCACCTATCATTAAAGGAATAAACCAATTACCAAAACCACCTATTAAAACAGGCATAACCATGAAGAAAATCATAATAAAAGCGTGAGCAGTTACAACTACGTTATATAGTTGATGATTTCCCATAAAAATTTGATTACCAGGTTGTGCTAATTCCATTCTGATTAAAACGGATAAAGTTGTACCTACAACACCTGAAAAAGCACCGAAAATTAAATATAGAGTAC----------------------------------------------------------------------------------------------CATTGATAAATC-----------------AACGACTA-TCCCAAATTGG-TGTTGCCTCCTTTACTCTAACCGAAG--------------------------CTAGAGCGTTTAAGAGCAG--CAACTTCCTACTACACAATAACCA--TTTGCCC-AGACCATTGCCTCACACAA--GACAGGTACACC--TCAAGGAA-AGAACAGAAAACAACTC-CAGTCA---GCTGCAAAGTCGGGCCG------------AAGCCTAACATACCGCCAATAGAGGTTG-CTTCCTTTAATGTCC-TAACCGAAGTCGCCCACTCGAGCAAAGCG-ATCCAAACAGATCACTGCGTTCGAAA-GTCACACTTCATCT-TAAACACAAGAAAG--AGCGAACGTACATTTAAAGGGACTCG--CGTCTTCTCCT-----CCGAAGAGGGA---------GTCAGCGAGACACCTCACAGTCTGCCAT-----CTCTCTTCTTGACTACACAA-AAAAAGAAAGGCAAGTTTGATGTACGGACACTGATACAGGCATACTTCCAGGCATAACCCGAAAGTGCAATGTGCGTTCAAAATTTCGATGACTCACTGAATTCTGCAATTCGCATTACGTATCGCAGTTCGCAGCGTTCTTCATCGATGTGCGAGCCTAGACATCCACTGCTGAAAGTTGTTATTGA--TTAAAACCAAAGACTTTCGTTTTCGGAGTATAGTTCAGTATT------AGTTT-AATGGGTTTAAAA-----GTACATCGGCAGA----------------CTACAATTA-------------------------------AGCAGC--CC-ACCTTCGTTCAGCTCTCTCC------GAGAAGAGAGCACAGAACATA------------------------------------------------------------------------GT------------------------------------------------------ Pythium_sp._TypeIIIs ----------------------------------------------AAAACCAAAATAAATGTTGATATAATACTGGATCACCTCCACCTGATGGATCATAGAAAGATGTATTCAAGTTTCTATCTGTTAATAACATTGTAATCGCACCAGCTAATACTGGTAATGTTAATAATAATAAGAAAGCTGTAATGAATACAGACCAAACGAATAATGGTAATCTGTGGAAGCTTAAACCAGGAGCTCTCATGTTATAAATAGTTGATAAGAAATTAATAGCACCTAATAAAGATGAGATACCTGATAAGTGTAAACTAAAAATAGCTAAATCTACTGAAGGTCCTGAGTGAGCTTGTACACTTGATAAAGGTGGATAAACAGTCCAACCAGTACCAGCACCTGATTCTACAATAGCTGAAGATACTAATAATAATAATGATGGTGGTAATAACCAAAAACTAATATTATTCATTCTAGGGAAAGCCATGTCTGGAGCACCTATCATTAAAGGAATAAACCAATTACCAAAACCACCTATTAAAACAGGCATAACCATGAAGAAAATCATAATAAAAGCGTGAGCAGTTACAACTACGTTATATAGTTGATGATTTCCCATAAAAATTTGATTACCAGGTTGTGCTAATTCCATTCTGATTAAAACGGATAAAGTTGTACCTACAACACCTGAAAAAGCACCGAAAATTAAATATAGA------------------------------------------------------------------------------GA----------AAGAGCGCCATTGATAAATC-----------------AACGACTA-TCCCAAATTGG-TGTTGCCTCCTTTACTCTAACCGAAG--------------------------CTAGAGCGCTTAAGAGCAG--CAACTTCCTACTACACAATAACCA--TTTGCCC-AGACCATTGCCTCACACAA--GACAGGTACACC--TCAAGGAA-AGAACAGAAAACAACTC-CAGTCA---GCTGCAAAGTCGGGCCG------------AAGCCTAACATACCGCCAATAGAGGTTG-CTTCCTTTAATGTCC-TAACCGAAGTCGCCCACTCGAGCAAAGCG-ATCCAAACAGATCACTGCGTTCGAAA-GTCACACTTCATCT-TAAACACAAGAAAG--AGCGAACGTACATTTAAAGGGACTCG--CGTCTTCTCCT-----CCGAAGAGGGA---------GTCAGCGAGACACCTCACAGTCTGCCAT-----CTCTCTTCTTGACTACACAA-AAAAAGAAAGGCAAGTTTGATGTACGGACACTGATACAGGCATACTTCCAGGCATAACCCGAAAGTGCAATGTGCGTTCAAAATTTCGATGACTCACTGAATTCTGCAATTCGCATTACGTATCGCAGTTCGCAGCGTTCTTCATCGATGTGCGAGCCTAGACATCCACTGCTGAAAGTTGTTATTGA--TTAAAACCAAAGACTTTCGTTTTCGGAGTATAGTTCAGTATT------AGTTT-AATGGGTTTAAAA-----GTACATCGGCAGA----------------CTACAATTA-------------------------------AGCAGC--CC-ACCTTCGTTCAGCTCTCTCC------GAGAAGAGAGCACAGAACATA------------------------------------------------------------------------GT-------------ACAACGGTTCACGTGG------------------------- Pythium_sp._TypeIV -----------------------------------------------------------------------------------------------------AAAAGAAGTATTAAAATTTCTATCAGTTAATAACATTGTAATAGCACCAGAAAATACTGGTAAAGTAATTACTAAAAGAAAAGCTGTAATTAATATAGACCAAACAAATAAAGGCATTCTATGCATACTTAATCCAGGAGCTCTCATATTAAAAATAGTTGCAATAAAATTAATAGCACCTAATAAAGATGAAATACCAGATAAATGTAAACTAAAAATAGCTAAATCTACTGAAGGTCCCGAGTGAGCAGCTACGCTTGATAAAGGTGGATATGCTGTCCAACCTGTACCAGCACCAGATTCTACTAAAGCAGAAGATACTAATAATAATAATGATGGAGGTAATAACCAAAAACTAATATTATTTAAACGTGGAAAAGCCATATCAGGAGCACCTAACATTAAAGGAACAAACCAATTACCAAAACCACCAACTAATATAGGCATAACAACAAAGAATAACATTAATAATCCATGTGCTGTAACCATAACATTATATAATTGATGATTTCCCATAAAAATTTGATTACCTGGTTGTGATAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pythium_sp._TypeIX ---------------------------------------------AGAACCAAAATAAAATGTTGATATAATACTGGATCACCTCCACCAGAAGGATCATAAAAAGATGTATTTAAATTTCTATCAGTTAATAACATAGTAATTGCACCTGCTAATACTGGTAATGTTAATAATAATAAAAAAGCTGTAATAAATATAGCCCAAACAAATAAAGGTAATCTATGAAAACTTAAACCAGGAGCTCTCATATTATAAATAGTTGATAAAAAATTAATAGCACCTAATAATGATGATATACCTGATAAATGTAAACTAAAAATAGCTAAATCTACTGAAGGACCTGAGTGAGCTTGTACACTAGATAATGGAGGATATACTGTCCAACCTGTACCAGCACCTGATTCAACAATAGCTGATGATACTAATAATAATAAAGATGGGGGTAATAACCAAAAACTAATATTATTCATACGAGGAAAAGCCATATCTGGAGCACCAATCATTAAAGGTACAAACCAGTTACCAAAACCACCAATTAAAACAGGCATAACCATAAAAAAAATCATAATAAATGCGTGAGCAGTAACAACAACATTATATAAATGATGATTACCTTCAAAAATTTGATTACCAGGTTGTGCTAATTCCATTCTAATTAAAACAGATAATGTAGTACCAACTACACCTGAAAAAGCACCAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAGCGAGACACAAGGTTCAAGCCCACAACC--GAACAGTACACC--TCAAAGCGAAAAACGGAAT---CCACACACTGAAACGCAACATTGTCGAGCCG------------AAGCCTAACGTACCGCGAATAGTGGTTT-CTTCCAT--ATGTCT-CCGCTGAAGTCGCTGTCGACTGCGAGCGA-TCCGA---GGACCGCCGCGTTCGAAA-TACGCGCTCCGTAG-AAAGCAAATAGAA---AGATCGTGTCGTTTTAAAGGGACTCG--CAGCAAGCGTATGCATTTTACAACACA---CACACACGCCGCGAGACACCTCACATCTGCACATG----CTCCAAGCCGGACTACACCG-ACAAAGAGAGGCAAGGTTGATGTACGGACACTGATACAGACATACTTCCAGGTATAACCCGAAAGTGCAATATGCGTTCAAAATTTCGATGACTCACTGAATTCTGCAATTCGCATTACGTATCGCAGTTCGCAGCGTTCTTCATCGATGTGCGAGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTTTAAAGCAAAGACTTTCGTCCTCACAGTATTGATCAGTTTT------TAAAGTAAGGGGTTTGAAAG---TATAAGTCAGCCGA-------------AGCGCGCATATA-------------------------AATACTTGCGCA--ACGACCTTCGATCAGCCAAAGC------TCCTCGCATTGCTTGCACTATCACTGCATTACACAGTAACGAAT--------------ACAAACACGCTCGAAACCCGGCGCGAATCGGATAC-----------------AAACAGTC-ACG---------------------------- Pythium_sp._TypeV -------------------------------CTTCTGGATGTCCAAAAAACCAAAATAAATGTTGGAATAAAACTGGATCACCCCCTCCTGCTGGATCATAAAAAGATGTATTAAAGTTTCTATCAGTTAATAACATTGTAATAGCACCAGAAAATACAGGTAAAGTTAATACTAAAAGAAAAGCTGTAATTAATATTGACCAAACAAATAAAGGCATTCTATGCATACTTAAACCAGGAGCTCTCATGTTAAATATAGTTGCAATAAAATTAATAGCACCTAATAATGAAGAAATACCTGATAAATGTAAACTAAAAATAGCTAAATCTACTGAAGGTCCAGAGTGTGCTGCTACACTAGATAATGGTGGATAAGCTGTCCAACCTGTACCAGCACCAGATTCTACTAATGCAGAAGATACTAATAATAATAATGATGGAGGTAATAACCAAAAACTAATATTATTTAAACGAGGAAAAGCCATATCAGGTGCACCTAACATTAAAGGTACAAACCAATTACCAAAACCACCAACTAATATAGGCATAACAACAAAGAATAACATTAATAATCCATGTGCTGTAACCATAACATTATATAATTGATGATTTCCCATAAATATTTGATTACCAGGTTGTGATAATTCTATTCTAATTAAAACAGACATAGTTGTTGCAACTATACCTGAAAAAGCACCAAAAATTAAATATAAAG-----------------------------------------------------------TGATATCAGGTCCAAATGAG----------ATACGCCCT----------------CAAAACAAGAAGACGTACAAATTCCCAAATGA-TGACACACTCCACGCACGATACAGA------------------------------------------------ACACCGGATAAAAACAGACAC----GAGAAACG-CATATAAAACCCATCGACC--ATCCGGTTCACC--CATACAGC-ACCACAGCCC---AAACACACGCATCAGCTGCATTGTCAAAGCGGCGC---GAACGCAGCCTAACATACCGCCAATACACAGTG-CCCAAGC--ATGCAC-GCGCCAAAGGTCGCCAGACTCGT---------------CAACAGACGCGTCCCACA-GCCCACCGGCACCC-AACGCACGCAAAGA--TACGCGTCCGACTTTCAAGGGACTTGA-CCGACGCATCA-----AAAAAGACACA---------ACAATCAAGACACCTCACATCTGCCACAATTT-CCAACGCGCCGACTACACGA-CGCAAAGGAGGCAAGTTTAGTGTACGGACACTGATACAGACATACTTCCAGGCATAACCCGAAAGTGCAATATGCGTTCAAAATTTCGATGACTCACTGAATCCTGCAATTCGCATTACGTATCGCAGTTCGCAGCGTTCTTCATCGATGTGCGAGCCTAGACATCCACTGCTGAAAGTTGCTATCTAG-TTCAAAGCAGAGACTTTCGTCCCCACAGTATGTTTCAGTTAT----CAAAGAG-AATGGGTTTGACAAGTTTACAGATAGCTCGCACGCCTCCCCCCAAAACAGAGAGAACACGCACAAGC-----------------------------------------------------------------------------------------------------------------------------------------CCAACCATGTCA----------------CAAACGGTTCACGTGGAAAGA-------------------- Pythium_sp._TypeVI ---------------------------------------------------------------TGATATAATACTGGATCACCTCCACCTGATGGATCATAAAAAGATGTATTTAAATTTCTATCTGTTAATAACATTGTAATTGCACCAGCTAATACAGGTAAAGTTAATAATAATAAAAAAGCTGTAATAAATATAGCCCAAACAAATAAAGGTAATCTATGAAAACTTAAACCAGGAGCTCTCATATTATAAATAGTTGATAAAAAATTAATTGCACCTAATAAAGATGATATACCTGATAAATGTAAACTAAAAATAGCTAAATCTACTGAAGGACCAGAGTGAGCTTGTACACTTGATAAAGGTGGATATACAGTCCAACCTGTACCAGCACCTGATTCAACAATAGCTGAAGATACTAATAATAATAAAGATGGAGGTAATAACCAAAAACTAATATTATTCATACGAGGAAATGCCATATCTGGTGCACCAATCATTAAAGGTACAAACCAATTACCAAAACCACCAATTAAAACAGGCATAACCATAAAAAAAATCATAATAAATGCATGAGCAGTAACAACAACATTATATAAATGATGATTACCTTCAAAAATTTGATTACCAGGTTGTGCTAATTCCATTCTAATTAAAACAGATAATGTAGTACCT-------------------------------------------------------------------------------------------------------------------------------CACACGCT----------------TTGCAGCGCGCAGTACAATGTTTCCCAAATGA-TACCCTTCTACCTATGCGCGACACAA--GGCC------------------ACACACAGACACTAACCACAG--AAAACGAC-ACACTCTACT-AACACACAATACT-TCGGTTCAAGCCCACAACC---GACAGTACACC--TCAAAGCA-AAGACGAAACAACACACTCACG---ACGCAACATTGTCGAGCCG------------AAGCCTAACGTACCGCGAAATGAGGGTC-ATTCCAT--ATGTCT-CTACCAAAGTCGCTATCGACTGCAGGCGA-TCCCA---AGACCGCCGCGTTCAAAT-GATGCGCTCCGCAG-AAAGC-AATAGAA---AGATCGTGTCCATTTAAAAGGACTCGCGCGCCTAGTCTA-----TCGTAAATAGA---CTGACGTAGCGCGAGACACTTCACATCTGCGCA------CTCCAAGCCGGACTACACCG-ACAAAGAGAGGCAAGTTTGATTTACGGACACTGATACAGACATACTTCCAGGTATAACCCGAAAGTGCAATATGCGTTCAAAATTTCGATGACTCACTGAATTCTGCAATTCGCATTACGTATCGCAGTTCGCAGCGTTCTTCATCGATGTGCGAGCCTAGACATCCACTGCTGAAAGTTGTTATCTAG--TAAAAGCAAAGACTTTCGTCCTCACAGTATGAATCAGTCAT------TAAGG-AATGGGTTTGAAAG---AATAAGTCAGCCAC-------------ACTGCGCAATACAGCACAAT-------------------------------GCGACCTTCG-TCAGCCGACCCACGCAGTCGCCACCATGCGCACCATACA-------------------------------------------------------------------------------------------------------------------------------- Pythium_sp._TypeVII ------------------------------------GGATGACCGAAAAACCAAAATAAATGTTGATATAATACAGGATCACCTCCACCTGATGGATCATAAAAAGATGTATTTAAATTTCTATCTGTTAATAACATTGTAATTGCACCAGCTAATACAGGTAAAGTTAGTAATAATAAAAAAGCTGTAATAAATATAGCCCAAACAAATAAAGGTAATCTATGAAAACTTAAACCAGGAGCTCTCATATTATAAATAGTAGATAAAAAATTAATTGCACCTAATAAAGATGATATACCTGATAAATGTAAACTGAAAATCGCTAAATCTACTGAAGGACCCGAGTGTGCTTGTACACTTGATAAAGGTGGATATACAGTCCAACCTGTACCAGCACCTGATTCAACGATAGCTGAAGATACTAATAATAATAAAGATGGTGGTAATAACCAAAAACTAATATTATTCATACGAGGAAAAGCCATATCTGGTGCACCAATCATTAAAGGTACAAACCAATTACCAAAACCACCGATTAAAACAGGCATAACCATAAAAAAAATCATAATAAATGCATGAGCAGTAACAACAACATTATATAAATGATGATTACCTTCAAAAATTTGATTACCAGGTTGTGCTAATTCCATTCTAATTAAAACAGATAGTGTAGTACCAACTACACCTGAAAAAGCACCGAAAATTAA-----------------------------------------------------------------------------------------AC------ACACACGCC----------------TTGCAGCGCGCAGTACAATGTTTCCCAAATGA-TACCCTTCTACCTACGTACGACATAA--AGCC------------------ACACATAGACGCTAACCACAG--AAATCGAC-ACACTCTACT-AACACACAATACT-TGGGTTCAAGCCCACAACC---GACAGTACACC--TCAAAGCA-AAGACGAAACAACACACTCACT---ACGCAACATTGTCGAGCCG------------AAGCCTAACGTACCGCGAAATGAGGGTT-CTTCCAT--ATGTCT-CTACCAAAGTCGCTATCGACTGCAGGCGA-TCCCA---AGACCGCCGCGTTCAAAT-GATGCGCTCCGCAG-AAAGC-AATAGAA---AGATCGTGTCCATTTAAAAGGACTCGCGCGCCTAGTACA---------ATAAAGA---CTGACGTAGCGCGAGACACTTCACATCTGCGCA------CTCCAAGCCGGACTACACCG-ACAAAGAGAGGCAAGTTTGATTTACGGACACTGATACAGACATACTTCCAGGTATAACCCGAAAGTGCAATATGCGTTCAAAATTTCGATGACTCACTGAATTCTGCAATTCGCATTACGTATCGCAGTTCGCAGCGTTCTTCATCGATGTGCGAGCCTAGACATCCACTGCTGAAAGTTGTTATCTAG--TAAAAGCAAAGACTTTCGTCCTCACAGTATGAATCAGTAAT------AAAGA-AATGGGTTTGAAAG---AATAAGTCAGCCAC-------------AATGCGCAATAAAGCACAAC-------------------------------GCGACCTTCGATCAGCCGACCCACGCAGTCGACACCATGCGCACGATATAAATACAGCACACA---------------CAGCGACAACACACGT--------CACGGCGCGAATCTCGTA------------------AGACA----------------------------------- Pythium_sp._TypeVIII ------------------------------------GGGTGACCAAAGAACCAAAATAAATGTTGATATAATACTGGATCACCTCCACCTGATGGATCATAGAAAGATGTATTTAAGTTTCTATCTGTTAATAACATTGTAATAGCACCAGCTAATACAGGTAATGTTAATAATAATAAGAAAGCTGTAATAAATACAGACCAAACGAATAATGGTAATCTATGGAAGCTTAAACCTGGAGCTCTCATATTATAAATAGTTGATAAGAAATTAATAGCACCTAATAAAGATGAAATACCTGATAAGTGTAAACTAAAAATAGCTAAATCTACAGAAGGTCCTGAGTGAGCTTGAACACTTGATAAAGGTGGATATACTGTCCAACCTGTACCAGCACCAGATTCTACAATAGCAGAAGATACTAATAATAATAAAGATGGTGGTAATAACCAAAAACTAATATTATTCATTCTAGGGAAAGCCATATCTGGAGCACCTATCATTAAAGGAATAAACCAATTACCAAAACCACCTATTAAAACAGGCATAACCATGAAGAAAATCATAATGAAAGCATGAGCAGTTACAACTACATTATATAGTTGATGATTTCCCATAAAAATTTGATTACCAGGTTGTGCTAATTCCATTCTGATTAAAACTGATAAAGTTGTACCAACAACACCTGAAAAAGCACCGAAA-------------------------------------------------------------------------GATATCAGGTCCAATTAGA----------AAGAGCGCCAATCATAGATT--------------------GACTA-TCCCAAA{AT}TGG-TGTTGTCTTCTTTACTCCG----------------------------------AAGAGCGTCTAAGAGCAG--CAACCTCCTACTACACAACAACCA--TTTGCCC-AGACCATTGCCTCACACAA--GACAGGTACACC--TCAAGGAA-AGAACAGAAAACAACACACCGTCA---GCTGCAAAGTCGGGCCG------------AAGCCTAACATACCGCCAATAGAGGTTG-CTTCCTTTAATGTTC-TAACCGAAGTCGCCCACTCGAGCAAAGCG-ATCCAAACAGATCACTGCGTTCGAAA-GTCACACTTCATCT-TAAACACAAGAAAG--AGCGAACGTACATTTAAAGGGACTCG--CGTCTTCTCCT-----CCGAGGAGGGA---------GTCAGCGAGACACCTCACAGTCTGCCAT-----CTCTCTTCTTGACTACACAA-AAAAAGAAAGGCAAGTTTGATGTACGGACACTGATACAGGCATACTTCCAGGCATAACCCGAAAGTGCAATGTGCGTTCAAAATTTCGATGTCTCACTGAATTCTGCAATTCGCATTACGTATCGCAGTTCGCAGCGTTCTTCATCGATGTGCGAGCCTAGACATCCACTGCTGAAAGTTGTTATTGA--TTAAAACCAAATACTTTCGTTTTTGGAGTATAGTTCAGTATT------AGTGT-AATGGGTTTAAAA-----GTACATCGGCAGA----------------CTACCATAA------------------------------CAGCAGC--CC-ACCTTCGTTCAGCTCTCCC--------GAGAGAGAGCACA{CG}AACATA------------------------------------------------------------------------GTT------------ACAACGTCACGTGAA-------------------------- Pythium_sp._TypeX -----------------------------------------------AAACCAAAATAAATGTTGATATAATACTGGATCACCTCCACCTGATGGATCATAAAAAGATGTATTTAAATTTCTATCAGTTAATAACATAGTAATAGCACCTGCTAATACTGGTAAAGTTAATAATAATAAAAATGCTGTAATAAATATAGACCAAACAAATAAAGGTAATCTATGAAAACTTAAACCAGGAGCTCTCATATTATAAATAGTTGATAAGAAATTAATAGCACCTAATAATGATGATATACCTGATAAATGTAAACTAAAAATAGCTAAATCTACTGATGGTCCTGAATGGGCTTGAACACTTGATAAAGGTGGGTATACTGTCCAACCTGTACCAGCACCTGATTCAACAATAGCTGATGATACTAATAATAATAAAGATGGAGGTAATAACCAAAAACTAATATTATTCATACGAGGAAAAGCCATATCTGGAGCACCAATCATTAAAGGTACAAACCAGTTACCAAAACCTCCAATTAAAACTGGCATAACCATAAAAAAAATCATAATAAATGCATGAGCAGTAACAACAACATTATATAAATGATGGTTACCTTCAAAAATTTGATTACCAGGTTGTGCTAATTCCATTCTAATTAAAACAGATAATGTAGTACCTACTACACCAGAAAAAGCACCAAAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACG---AGATTGCCGCGTTCAAAA-TACACGCCCT?GAGCAACGC-AATAGAAA--AACCGGAGTCCATTTCAAAGGACTCGTGCACTCTCGTCATCTACCCGAAGATAGATCACCAGCATGGCGCGAGACACTTCACCTCTGCTCCTT----CTCCAAGCCGGACTACACCG-ACGAAGAGAGGCAAGTTTAATGTACGGACACTGATACAGACATACTTCCAGGCATAACCCGGAAGTGCAATATGCGTTCAAAATTTCGATGACTCACTGAATTCTGCAATTCGCATTACGTATCGCAGTTCGCAGCGTTCTTCATCGATGTGCGAGCCTAGACATCCACTGCTGAAAGTTGTTATCTAG--TAAAAGCAAGGACTTTCGTCCTCACAGTATA-ATCAGTACG------TCACG-TATGGTTTGAAAGA---CATAAATCAGCCGCT----TGCTCGAGCCATTGCAGCAACGTGCGACAACGCGCACATCGCTCCGATAGCGAACGC--CCGACCTTCGTTTAGCCGACTCCG---ATCGACAGCGTGTCCAGGA-----CGACGCCCGACAATATCCGATCCGATCGAATATCGACAAGCGCTTCCCAGACGCACCACCAATCG-------------------------------------------------------------- Pythium_sp._TypeXI -------------------------------------------------------ATAAATGTTGGAATAATACTGGATCACCACCACCTGCTGGATCATAAAATGATGTATTAAAGTTTCTATCTGTTAATAACATAGTAATAGCACCTGAAAATACAGGTAAAGTTAATACTAAAAGAAAAGCTGTAATTAATATTGACCAAACAAATAAAGGCATTCTATGCATACTTAAACCTGGAGCTCTCATATTAAAAATAGTTGCAATAAAATTAATAGCACCTAATAATGAAGAAATACCAGATAAATGTAAACTAAAAATTGCTAAATCTACTGAAGGTCCTGAATGCGCAGCTACACTAGATAAAGGTGGATAAGCAGTCCAACCTGTACCCGCACCAGATTCTACTAATGCAGAAGATACTAATAATAATAATGATGGAGGTAATAACCAAAAACTAATATTATTTAAACGTGGAAAAGCCATATCAGGTGCACCTAACATTAAAGGTACAAACCAATTACCAAAACCACCAACTAATATAGGCATAACAACAAAGAATAACATTAATAATCCATGTGCTGTAACCATAACATTATATAATTGATGATTCCCCATAAATATTTGATTACCTGGTTGTGATAATTCTATTCTAATTAAAACAGACATAGTTGTTGCAACTATACCTGAAAAAGCACCAAAAATTAAATATA----------------------------------------------------------------------------------------------------------------------ACTACGAAAGACCACACAGATTCCCAAATGG-TGACACACTCCGCGCGCGATACAGA------------------------------------------------ACACCGGCTACAGACTAAC--------GAAACA-CGAGTCAAACCCGTCGACC--ATCCGGTTCACC--CATACAACACACGCCGCCC---AAACACACGCATCAGCTGCATTGCCAAAGCCGCGCACGAAACGCAGCCTAACATACCGCCAATACACAGTG-CCCAAGC--ATGCAC-GCGCCAAAGGTCGCCAGACTCGT---------------CAACAGACGCGTCCCACA-GCCCACCAGCACCC-AACGCACGCAAAGA--TACGCGTCCGACTTTCAAGGGACTTGC-TGTCCGCGAAG-------------------------GACCACAAGACACCTCACATCTGCTGCAATTCCCACACGCGCCGACTACACGACGCGAAAGGAGGCAAGTTTAGTGTACGGACACTGATACAGACATACTTCCAGGCATAACCCGAAAGTGCAATATGCGTTCAAAATTTCGATGACTCACTGAATCCTGCAATTCGCATTACGTATCGCAGTTCGCAGCGTTCTTCATCGATGTGCGAGCCTAGACATCCACTGCTGAAAGTTGCTATCTAG-TTTAAAGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pythium_sp._TypeXII -------------------------------------GGGTGTCCAAAAACCAGAATAAATGTTGATATAATACAGGATCTCCACCACCTGATGGATCATAAAATGAAGTATTTAAATTCCTATCTGTTAAAAGCATTGTAATTGCACCAGCTAACACAGGTAAAGTTAATAATAATAAGAAAGCTGTAATAAAAATAGCCCATACAAATAAAGGTAATCTATGAAAACTTAAACCAGGAGCTCTCATATTATAAATAGTAGATAAGAAATTAATAGCACCTAATAATGATGAAATACCTGATAAGTGTAAACTAAAAATAGCTAAATCAACAGAAGGACCTGAGTGTGCTTGAACACTTGATAATGGTGGATAAACTGTCCAACCTGTACCAGCACCCGATTCTACAATAGCTGAAGATACTAATAATAATAAAGAAGGAGGTAATAACCAAAAACTAATATTATTCATTCTTGGGAAAGCCATATCTGGAGCACCAATCATTAAAGGTACAAACCAATTACCAAAACCACCTATTAATACAGGCATAACCATGAAAAAAATCATAATAAAAGCATGAGCTGTAACTACAACATTATATAAATGATGATTTCCCATAAAAATTTGATTACCTGGTTGTGCTAATTCCATTCTAATTAAAACAGATAAAGTTGTACCAACTACACCTGAAAAAGCACCAAAAATTAAATATAAAGAA-----------------------------------------------------------------------------------------------------------------------AAAAGCGCCACGG-TCCCAAATTGG-TGTTGCCTCCTTTACTCTCACCGAAG--------------------------CAAGAGCGTCCGAGAGCAG--CGACCCACTACTACACAGCAACCA--TTTGCCC-AGACCATTGCCTCACACTATTTTCAGGTACACC--TCAAGGAA-AGAACAGAAAACCACACTCCGTCA---GCTGCAAAGTCGGGCCG------------AAGCCTAACATACCGCCAATAGAGGTTG-CTTCCTTTAATGTCC-TAACCGAAGTCGCCCGAAAGCGCAAAGCG-ATCCAAACAGATCACCGCGTTCGCAA-GCCACACTTCTACATCGAACACAAGAAAG--AGCGAACGTACGTTTAAAGAGACTCG--CGTCTTCTCCT-----CCGAAGAGGGA---------GTCAACGAGACATCTCACCTTCTGCCAT-----CTCTCTCCCTGACTACACAG-AAAAAAAGAGGCAAGTTTGTTGTACGGACACTGATACAGGCATACTTCCAGGCATAACCCGAAAGTGCAATGTGCGTTCAAGATTTCGATGACTCACTGAATTCTGCAATTCGCATTACGTATCGCAGTTCGCAGCGCTCTTCATCGATGTGCGAGCCTAGACATCCACTGCTGAAAGTTGTTATTGA--TTAAAACCAAAGACTTTCGTTTTTGGAGTATAGTTCAGTATT------AAAGT-AATGGGTTTGAAAT----GTACATCGGCAAG----------------CCACCATAA------------------------------CAGCAGC--TC-ACCTTCGTTCAGCTCCCCG----------AGAGGAGCACAGAAC----------------------------------------------------------------------------------------------------------------------------------- ; END; BEGIN TREES; TITLE Pythium_ITS_and_cox1_garli_run; LINK TAXA = Taxa1; TRANSLATE 1 Pythium_sp._TypeI, 2 Pythium_sp._TypeII, 3 Pythium_sp._TypeIIIe, 4 Pythium_sp._TypeIIIs, 5 Pythium_sp._TypeIV, 6 Pythium_sp._TypeIX, 7 Pythium_sp._TypeV, 8 Pythium_sp._TypeVI, 9 Pythium_sp._TypeVII, 10 Pythium_sp._TypeVIII, 11 Pythium_sp._TypeX, 12 Pythium_sp._TypeXI, 13 Pythium_sp._TypeXII, 14 Pythium_adhaerens_OOMYA174_07, 15 Pythium_angustatum_OOMYA175_07, 16 Pythium_apleroticum_OOMYA234_07, 17 Pythium_chamaehyphon_OOMYA088_07, 18 Pythium_cinnamomi_OOMYA017_07, 19 Pythium_coloratum_OOMYA1380_08, 20 Pythium_dissotocum_OOMYA1449_08, 21 Pythium_helicoides_OOMYA1420_08, 22 Pythium_litorale_OOMYA1379_08, 23 Pythium_marsipium_OOMYA235_07, 24 Pythium_middletonii_OOMYA177_07, 25 Pythium_pectinolyticum_OOMYA1615_08, 26 Pythium_rostratifingens_OOMYA1699_08, 27 Pythium_sp_nov_OOMYA1344_08, 28 Pythium_sp_nov_OOMYA1646_08, 29 Pythium_sp_nov_OOMYA1702_08; TREE bestREP1 = [&R] ((18:0.26523332,((7:0.0033971,21:6.9303E-4):0.04177491,((5:1.0E-8,22:0.00642208):0.06406389,(12:1.0E-8,17:1.0E-8):0.04562113):0.00524551):0.27825304):0.13328266,((11:1.0E-8,26:1.0E-8):0.14870474,((8:0.01544489,(9:0.00330725,24:0.0027223):0.01471751):0.04093977,((2:0.10477997,23:0.06674063):0.0547057,(6:0.00448535,28:0.00958925):0.08495722):0.03000621):0.04738074):0.09369307,((13:0.01513635,14:0.00866141):0.07684349,(15:0.04505072,((29:1.0E-8,(1:8.0136E-4,25:0.00304352):7.6126E-4):0.0280296,((27:0.01580452,(10:0.0254698,16:0.02222514):0.0134554):0.00484608,(3:1.0E-8,(19:7.5267E-4,(4:7.7588E-4,20:0.00754054):7.4784E-4):7.4791E-4):0.02341372):0.01271074):0.01536478):0.02015937):0.1756333); END;