#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 27, 2024; 4:37 GMT TreeBASE (cc) 1994-2008 Study reference: Lo medico J.M., Tosto D., Rua G., Scataglini M., Rãºgolo de agrasar Z., & Vega A. 2017. Phylogeny of Digitaria Sections Trichachne and Trichophorae (Poaceae, Panicoideae, Paniceae): A Morphological and Molecular Analysis. New Circumscription and Synopsis. Systematic Botany, 1. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S17981] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=26; TAXLABELS Anthaenantia_lanata Digitaria_brownii Digitaria_californica_var._californica Digitaria_californica_var._villosissima Digitaria_catamarcensis Digitaria_ciliaris Digitaria_eggersii Digitaria_eriantha Digitaria_eriostachya Digitaria_gerdesii Digitaria_hitchcockii Digitaria_insularis Digitaria_laxa Digitaria_milanjiana Digitaria_neesiana Digitaria_patens Digitaria_phaeothrix Digitaria_pittieri Digitaria_sacchariflora Digitaria_sanguinalis Digitaria_similis Digitaria_swalleniana Digitaria_tenuis Digitaria_velutina Megaloprotachne_albescens Panicum_repens ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M36874] TITLE Digitaria_Sections_Trichachne_and_Trichophorae_Morphological_Characters; LINK TAXA = Taxa1; DIMENSIONS NCHAR=115; FORMAT DATATYPE=Standard SYMBOLS= "0 1 2 3 4" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 ] [ . . . . . . . . . . . . . ] Anthaenantia_lanata 000000000100????31201{01}0102111?00100010010000{012}011100200001?11000001010?001100011?0000?{01}110?112110110000010000?1?010? Digitaria_brownii 000010101121100{12}1120100002011300001001111022001{12}000000021{01}?0000001110100111000{01}1{12}00100010100{01}001?11120?1?00?00{01}?101 Digitaria_californica_var._californica 0000{01}0{01}001211002102110000201120010100111102100{01}001010002111000000111010001100001100001011100000101112{01}01000?0000111 Digitaria_californica_var._villosissima 0000{01}0{01}001211002102110000201120010100111102100{01}001010002111000000111010001100001100001011100000101112{01}01000?0000111 Digitaria_catamarcensis 0000110011212002102110000201120010100111102100000101000211100000011101000110000121010000210000010101200001010001111 Digitaria_ciliaris 0000000111211002111110000211110011100111001001100011{12}002{01}1{01}01001011001000011001???0?0{01}01210010010101200011110100101 Digitaria_eggersii 000000100121100211101000021111000010011110110000000000021{01}00000001100100011100011000010110000001000011?1?0??00011?? Digitaria_eriantha 00000001112110021111100102111100001001110010011000112002{01}110100101100100011{02}00{01}100100{01}00110000000111200000010000111 Digitaria_eriostachya 00000011112{01}0002{12}120100{01}0201110010100111021101100?{01}1000211101000011101000?{01}1001????10{01}001100100010012000?1010?0110? Digitaria_gerdesii 220002011121000231201000021113000000011111100??000???0021{01}?0?00??111020101000?1?00000101000000001101010111110100100 Digitaria_hitchcockii 0000001001212002112110000111130000100111101000100001000211?000000111010001100001100001010100000101{01}010?10{01}1?0000111 Digitaria_insularis 000011000121{12}00210{12}11000020111001010011110{12}10110010100021110000001110100011000011000010{01}1100000001112{01}0{01}00110001111 Digitaria_laxa 00000100012120020111120??201101000100111101101010011000211110100011101000110000?200001002100100{01}00112000000?0010111 Digitaria_milanjiana 00000001112010121010100002011110100000110?1000???011200201101000011002000?110011??1?00?12000000?011010?000110?01100 Digitaria_neesiana 11002201112100021211100002111100100000110110001??001{02}0021111100001120200110001?10100000101000100110010?10001001110? Digitaria_patens 0000101011211002102110000201120010100111101200100100100211100000011111001110000110000{01}01000000010110{12}0010{01}{01}?000{01}100 Digitaria_phaeothrix 1100020111210002111110000211110020100111011000000011{01}0021110100001110200{01}100000{01}000001000110211{01}1{01}020020{01}0010{01}00100 Digitaria_pittieri 00000010012110021111100002111100011001110011000000{01}1100211100000011001000?1{01}00?1??0001012000100{01}01102101000?000011? Digitaria_sacchariflora 000011000121200211{12}11000020111001010011110110100000100021110000001110100011000011000?000010000000110200011010000111 Digitaria_sanguinalis 00000001112110021111100002111110111001111012011000112002{01}110100101100100001{01}001????00101{02}100{01}0000110110100010000101 Digitaria_similis 0000110001212002{12}12110000201100000100111102100000101000211100000011101000110000110010000110000000111200000110000111 Digitaria_swalleniana 00001100012110021111100002011000001001111021000000010002111000000111010001100001210001012000000{01}0{01}101101001?0001110 Digitaria_tenuis 000000100121100211211000020111000010011110110000000100021{01}?{01}0000011101000110000110000{01}01210000000110210100010000111 Digitaria_velutina 020000000121201211111000011111000010011100100?100000000211101020011001000011101???000111110010000011000100000000100 Megaloprotachne_albescens 000000110121402011111000031112011020011111131010000110021110101001020100000020?1?10?0110011100010111102000010000100 Panicum_repens ???????10001220{02}31200?1003110?000021020000{12}0211??00000001?11000001110?01111000002201?0010?11{02}101110210?100110001200 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M36875] TITLE Digitaria_Sections_Trichachne_and_Trichophorae_DNA_Characters; LINK TAXA = Taxa1; DIMENSIONS NCHAR=621; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Anthaenantia_lanata TG?ACCTGCGG?AGGATCATTGTCGTGACCCTTAAACAAAACTGACCGTGAACGTGTTGCCTATGCTGCCGGTCTT?AGGATTGGCAAAGGCCCTGA???TCACCCAACTTGGATGAGAGGGGCCTCAACAGAACTCACGGCGCCAAAGGCGTCAAGGAACACTAATATTGCC?TGCGAGGGG??TTCGGTTAGCTTGCTGGCCTAA??CTTTAGCAGCGATGATATGTCAATCCAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTTAAGGGCACGTCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?AACCCCCGAGGTAAGGGACGTGGCGTTT?GGCCCCCCATGCCGAAGGGCATGGTGAGCCGAAGTTCGGGCTGCTGGTGTATCATACCATGCACC?GCACGTGGTGGGCGACACAAAGTTGTTCTCGGTGCAGTGCGTTGGTATGTAGCTAGCTTATTGGCCCCAAGGACCCAA??ATTACCGCAGCACAAATTATTGCTCGGACC? Digitaria_brownii ?????????????????????????????????????????????????????????????????????????????????TCGG?TAAGGCCCTCGACTTCGTCC????CGGAGGAGA?GGGCCGCAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACC??TATTGCCTTGCCTGGGG?ACGTGGCCGGCTTGCCGGACGCG?CCCCACGCAGCGATGCTATGTTAACCAACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGCCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAACCCCATCCAAGGGGAGGGACGTGGCGTTT?GGCCCCCCGTGCCGCAGGGCGCGGTGGGCCGAAGTCGAGGCTGCCGGCGTACCGTGCCGGGCACC?GCACATGGTGGGCGACATCAAGTTGTTCTCGGTGCAGCGCCCCGGCACGTAGCCAGCGTGTTGGCCCTAAGGACCCAT???CGACCGTAGCGC??TT?GCCGCTCGGACC? Digitaria_californica_var._californica TGAA?CTGCGGAAGGATCATTGTCGTGACCC?TAAACAAAACAGACCGTGAACATGTCATCAAACTTGTCGGGCTT?CGGCTCGGCTAAGGCCCCCACCTTCGTCT????CGGAGGAGA?GGGCCGCAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACT??TATTGCATTGCTCGGGG?ATGTGGTCGGCCTGCCGGCCACAGCCTCGTGTAGCGATTCTATGTTAATCCACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCATCCAAGGGGAGGGACGTGGTGTTT?GGCCCCCCGTGCCGCAAGGTGCGGTGGGCCGAAGTTGAGGCTGCCGGCATACCGTGTCGGGCACC?GCACGTTGTGGGCGACATCAAGTTGTTCTCGGTGCAGCGCCCCGGCATGTAGCTAGCATGTTGGCCCTAAGGACCCAT???TGACCGTAGCGC??TTTGCCGCTCGGACC? Digitaria_californica_var._villosissima TGAACCTGCGGAAGGATCATTGTCGTGACCC?TAAACAAAACAGACCGTGAACATGTCATCAAACTCGTCGGGCTT?CGGCTCGGCTAAGGCCCCCACCTTCGTCT????CGGAGGAGA?GGGCCGCAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACT??TATTGCATTGCTCGGGG?ATGTGGTCGGCCTGCCGGCCACAGCCTCGTGTAGCGATTCTATGTTAATCCACACGACT{AG}TCGGCAA{AG}GGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCATCCAAGGGGAGGGACGTGGTGTTT?GGCCCCCCGTGCCGCAAGGTGCGGTGGGCCGAAGTTGAGGCTGCCGGCATACCGTGTCGGGCACC?GCACGTTGTGGGCGACATCAAGTTGTTCTCGGTGCAGCGCCCTGGCACGTAGCTAGCATGTTGGCCCTAAGGACTCAT???TGACCGTAGCGC??TTTGCCGCTCGGACC? Digitaria_catamarcensis TGAACCTGCGGAAGGATCATTGTCGTGACCC?TAAACAAAACAGACCGTGAACGTGTCATCAAACTCGTTGGGCTT?CGGCTCGGCTAAGGCCCTCGCCTTCGTTC????CGGAGGAGA?GGGCCACAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACT??TATTGCATTGCTCGGGG?ATGTGGTCGGCCTGCCGGCCGCAGCCTCGTGTAGCGATTCTATGTTAATCCACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTTTGGTCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCATCCAAGGGGAGGGACGTGGTGTTT?GGCCCCTCGTGCCGCAAGGTGCGGTGGGCCGAAGTTGAGGCTGCCGGCATACCGTGCCGGGCACC?GCACGTGGTGGGCGACATCTAGTTGTTCTCGGTGCAGCGCCCCGGCACTTAGCTAGCACGTTGGCCCTTAGGACCCAT???CGACCGTAGCGC??TTCGCCGCTCGGACC? Digitaria_ciliaris ??????????????????????TCGTGACCC?TAAACAAAACAGACTGTGAACGTGTCATCAAAGTCGTCGAGCTT?CGGCTCGGCTAAGGCCCTCGACTTCGTCC????CGGAGGAGA?GGGCCGCAAAAGAACCCAGGGCGCCGAAGGCGTCAAGGAACACT??TATTGCCTTGCTCGGGG?ATGTGGTTGGCTTGCCGGCCGCGCCCCCGTGCAGCGATGCTATGTAAACCAACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGAAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTCGAGGGCACGCCTGCCTGGGCGTCACGTCAAAAGACACTCCCAA?CCCATCCAAGGGGAGGGACGTGGTGTTT?GCCCTCCCGTCCCCCAAGGCGCGGTTGGCCGAAGTTGAGCCTCCCGGAATACCGTGTCGGGCCCC?GCACGTGGTGGGCGACTTCAAGTTGTTCTCGGTGCAGCCCCCCGGCACGTAGCTAGCGCGTT?GCCCTAAGGACCCAT???CGACCGTAGCGC??TT?GTTGCTCGGACC? Digitaria_eggersii TGAACCTGCGGAAGGATCATTGTCGTGACCC?TAAACAAAACAGACCGTGAACGTGTCATCAAACTCGTCGGGCTT?CGGCTCGGCTAAGGCCCTCGCCTTCGTCT????CGGAGGAGA?GGGCCGCAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACT??TATTGCATTGCACGGGGTGTGTGGTCGGCCTGCCGGCTGCAGCCTCGTGTAGCGATTCTATGTTAATCCACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTTTGGTTGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?ACCATCCAAGGGGAGGGACGTGGTGTTT?GGCCCCCCGTGCCGCAAGGCGCGGTGGGCCGAAGTTGAGGCTGC?GGCATACCGTGCCGGGCACC?GCACGTGGTGGGCGACATCAAGTTGTTCTCGGTGCAGCGCCCCGGCACGTAGCTAGCATGTTGGCCCTAAGGACCCAT???CGACCGTAGCGC??TTCGCCGCTCGGACC? Digitaria_eriantha TGAACCTGCGGAAGGATCATTGTCGTGACCC?TAAACAAAACAGACCGTGAACGTGTCATCGAAGTCGTCGGGCTT?CGGCTCGGCTAAGGCCCTCGACTTCGTCC????CGGAGGAGA?GGGCCGCAAAAGAACCCAGGGCGCCGAAGGCGTCAAGGAACACT??TATTGCCTTGCTCGGGG?ACGTGGTCGGCTTGCCGGCCGCG?CCCCGTGCAGCGATGCTATGTCAACCAACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCATCCAAGGGGAGGGACGTGGTGTTT?GGCCTCCCGTGCCGCAAGGTGCGGTTGGCCGAAGTTGAGGCTGCCGGCATACCGTGTCGGGCACC?GCACGTGGTGGGCGACTTCAAGTTGTTCTCGGTGCAGCGCCCCGGCACGTAGCTAGCGCGTTGGCCCTAAGGACCCAT???CGACCGTAGCGC??TG?GCCGCTCGGACC? Digitaria_eriostachya TG?ACCTGCGG?AGGATCATTGTCGTGACCC?TAAACAAAACAGACTGTGAACGTGTCATCAAAGTCGTCGGGCTT?CGGCTCGGCTAAGGCCCTCGACTTCGTCC????CGGAGGAGA?GGGCCGCAAAAGAACCCAGGGCGCCGAAGGCGTCAAGGAACACT??TATTGCCTTGCTCGGGG?ATGTGGCCGGCTTGCCGGCCGCGCCCCCGTGCAGCGATGCTATGTAAACCAACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTCGAGGGCACGCCTGCCTGGGCGTCACGTCAAAAGACACTCCCAA?CCCATCCAAGGGGAGGGACGTGGTGTTT?GGCCTCCCGTGCCGCAAGGCGCGGT??GTCGAAGTTGAGGCTGCCGGCATACCGTGTCGGGCACC?GCACGTGGTGGGCGACTTCAAGTTGTTCTCGGTGCAGCGCCCCGGCACGTAGCTAGCGTGTT?GCCCTAAGGACCCAT???CGACCGTAGCGC??TT?GCCGCTCGGACC? Digitaria_gerdesii TGAACCTGCGGAAGGATCATTGTCGTGACCA?TAAACAAAACAAACCGCGAACGTGTCATCAGTCTCGTCGGGCTTT?GGCTCGGCTAAGAC{CT}CCCGCCTTCGTCCCGGACGGAGGAGA?GGGCCGCAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACT??TATTGCCTTGCTCGGGG?ACGTGGTCGGCCTGCTGGCCACG?CCTCGCGCAGCGATGCTATGTTAAACAACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCGTCTGGTCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCATCCAAGGGGAGGGACGTGGTGTTT?GGCTCCTCGTGCCGCAAGGCGCGGTGGGCCGAAGTTGAGGCTGCCGGCATACCGTGCCGGGCACA?GCACGTGGTGGGCGACTTACAGTTGTTCTCGGTGCAGCGCCCCGGCACGTAGCTAGCAAGATGGCCACAAGGACCCAT???CGACCGTAGCGC??TTCGCCGCTCGGACC? Digitaria_hitchcockii TGAACCTGCGGAAGGATCATTGTCGTGACCC?TAAACAAAACAGACCGTGAACGTGTCATCAAAGTCGTCGGGCTT?CGGCTCGGCTAAGGCCCCCACCTTCGTCC????TGGAGGGGA?GGGCCGCAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACT??TATTGCCTTGCTCGGGG?ATGCGGTCGGCGTGCCGGCCGCA?CCCCGTGCAGCGATGCTATGTTAATCCACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCACCCAAGGGGAGGGACGTGATGTTT?GGCCCTCCGTGCCGCAAGGCGCGGTGGGCCGAAGTTGAGGCTGCCGGCATACCGTGCCGGGCACC?GCACATGGTGGGCGACATCAAGTTGTTCTCGGTGCAGCGCCTCGGCACATAGCTAGCATGTTGGCCCTAAGGACCCAT???CCACCGTAGCGC??TTCGTCGCTCGGACC? Digitaria_insularis TGAGCCTGCGG?AGGATCATTGTCG?GACCC?TAAACAAAACAGACCGTGAACGTGTCATCAAACTCGTCGGGCTT?CGGCTCGGCTAAGGCCCTCGCCTTCGTTT????CGGAGGAGA?GGGCCACCAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACT??TATTGCATTGCTCGGGG?ATGTGGTCGGCCTGCCGGCTGCAGCCTCGTGTAGCGATTCTATGTTAATCCACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTTTGGTTGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCATCCAAGGGGAGGGACGTGGTGTTT?GGCCCCCTGTGCCGCAAGGCGCGGTGGGCCGAAGTTGAGGCTGCTGGCATACCGTGCCGGGCACC?GCACGTGGTGGGCGACATCTAGTTGTTCTCGGTGCAGCGCCCCGGCACTTAGCTAGCACGTTGGCCCTAAGGACCCAT???CGACCGTAGCGC??TTCGCCGCTCGGACC? Digitaria_laxa TGAACCTGCGGAAGGATCATTGTCGTGACCC?TAAACAAAACAGACCGTGAACGTGTCATCAAAGTCGTCGGGCTT?CGGCTCGGCTAAGGCCCCCACCTTCGTCC????TGGAGGGGA?GGGCCGCAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACT??TATTGCCTTGCTCGGGG?ATGCGGTCGGCGTGCCGGCCGCA?CCCCGTGCAGCGATGCTATGTTAATCCACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCACCCAAGGGGAGGGACGTGATGTTT?GGCCCTCCGTGCCGCAAGGCGCGGTGGGCCGAAGTTGAGGCTGCCGGCATACCGTGCCGGGCACC?GCACATGGTGGGCGACATCAAGTTGTTCTCGGTGCAGCGCCTCGGCACATAGCTAGCATGTTGGCCCTAAGGACCCAT???CCACCGTAGCGC??TTCGTCGCTCGGACC? Digitaria_milanjiana TGAACCTGCGGAAGGATCATTGTCGTGACCC?TAAACAAAACAGACCGTGAACGTGTCATCAAAGTCGTCGGGCTT?CGGCTCGGCTAAGGCCCTCGACTTCGTAC????AGGAGGAGA?GGGCCGCAAAAGAACCCAGGGCGCCGAAGGCGTCAAGGAACACT??TGTTGCCTTGCTCGGGG?ATGTGGTCGGCTTGCCAGCCGCGCCCCCGTGCAGCGATGCTATGTAAACCAACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCATCCAAGGGGAGGGACGTGGTGTTTGGGCCTCCCATGCCGCAAGGCGCGGTTGGCCGAAGTTGAGGCTGCCGGCATACCGTGCCGGGCACC?GCACGTGGTGGGCGACTTCAAGTTGTTCTCGGTGCAGCGTCCCGGCACGTAGCTAGCGCATTGGCCCTAATGACCCAT???CGACCGTAGCGC??TT?GCCGCTCGGACC? Digitaria_neesiana TGAACCTGCGGAAGGATCATTGTCGTGACCC?TAAACAAAACAAACCGCGAACG{AT}GTCATCAGTCTCGTCGGGCTTT?GGCTCGGCTAAGGCCCCCGCCTTCGTCCCGGACGGAGGAGA?GGGCCGCAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACT??TATTGCCTTGCTCGGGG?ACGTGGTCGGCCTGCTGGCCACG?CCTCGCGCAGCGATGCTATGTTAAACAACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTCGAGGGCACGTCTGCCTGGGCGTCACGCCAAAAGACACTCCCA??CCCATCCAAGGGGAGGGACGTGGTGTTT?GGCTCCTCGTGCCGCAAGGCGCGGTGGGCCGAAGTTGAGGCTGCCGGCATACCGTGCCGGGCACA?GCACATGGTGGGCGACTTACAGTTGTTCTCAGTGCAGCGCCCCGGCACGTAGCTAGCAAGATGGCCACAAGGACCC{AT}T???CGACCGTAGCGC??TTCGCCGCTCGGACC? Digitaria_patens TGAACCTGCGGAAGGATCATTGTCGTGACCC?TAAACAAAACAGACCGTGAACGTGTCATCAAACTTGTCGGGCTT?CGGCTCGGCTAAGGCCCCCACCTTCGTCC????CGGAGGAGA?GGGCCGCAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACT??TATTGCCTTGCTCGGGG?ATGTGGTCGGCCTGCCGGCCACAGCCTCGTGCAGCGATTCTATGTTAATCCACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCATCCAAGGGGAGGGACGTGGTGTTTGGCCCTCCCGTGCCGCAAGGTGCGGTGGGCCGAAGTTGAGGCTGCCGGCATACCGTGTCGGGCACC?GCACGTTGTGGGCGACATCAAGTTGTTCTCGGTGCAGCGCCCCGGCACGTAGCTACCATGTTGGCCCTAAGGACCCA?????????????????????????????????? Digitaria_phaeothrix TG?ACCTGCGG?AGGATCATTGTCGTGACCC?TAAACAAAACAAACCGCGAACGTGTCATCAGTCTCGTCGGGCTTT?GGCTCGGCTAAGGCCCCCGCCTTCGTCTCGGACGGAGGAGA?GGGCCGCAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACT??TATTGCCTTGCTCGGGG?ACGTGGTTGGCCTGCTGGCCACG?CCTCGCGCAGCGATGCTATGTTAAACAACATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCATCCAAGGGGAGGGACGTGGTGTTT?GGCTCCTCGTGCCGCAAGGCGCGGTGGGCCGAAGTTGAGGCTGCCGGCATACCGTGTCGGGCACA?GCACGTGGTGGGCGACTTACAGTTGTTCTCAGTGCAGCGCCCCGGCACGTAGCTAGCAAGATGGCCACAAGGACCCAT???CGACCGTAGCGC??TTCGCCGCTCGGACC? Digitaria_pittieri TGAACCTGCGGAAGGATCATTGTCGTGACCC?TAAACAAAACAGACCGTGAACGTGTCATCAAACTCGTCGGGCTT?CGGCTCGGCTAAGGCCCCCGCCTTCGTCT????CGGAGGAGA?GGGCCGCAAAAGAACCCACGGCGCCAAAGGCGTCAAGGAACACT??TATTGCATTGCTCGGGG?ATGTGGTCGGCCTGCCGGCCGCAGCCTCGTGTAGCGATTCTATGTTAATCCACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTATCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCATCCAAGGGGAGGGACGTGGTGTTT?GGCCCCTCGTGCCGCAAGGTGCGGTGGGCCGAA?TTGAGGCTGCCGGCATACCGTGCCGGG???????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Digitaria_sacchariflora TGAACCTGCGGAAGGATCATTGTCGTGACCC?TAAACAAAACAGACCGTGAACGTGTCATCAAACTCGTCGGGCTT?CGGCTCGGCTAAGGCCCTCGCCTTCGTTT????CGGAGGAGA?GGGCCACCAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACT??TATTGCATTGCTCGGGG?ATGTGGTCGGCCTGCCGGCTGCAGCCTCGTGTAGCGATTCTATGTTAATCCACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTTTGGTTGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCATCCAAGGGGAGGGACGTGGTGTTT?GGCCCCTCGTGCCGCAAGGCGCGGTGGGCCGAAGTTGAGGCTGCTGGCATACCGTGCCGGGCACC?GCACGTTGTGGGCGACATCTAGTTGTTCTCGGTGCAGCGCCCCGGCACTTAGCTAGCACGTTGGCCCTAAGGACCCAT???CGACCGTAGCGC??TTCGCCGCTCGGACC? Digitaria_sanguinalis T??ACCTGCGG?AGGATCATTGTCGTGACCC?TAAACAAAACAGACTGTGAACGTGTCATCAAAGTCGTCGGGCTT?CGGCTCGGCTAAGGCCCTCGACTTCGTCC????CGGAGGAGA?GGGCCGCAAAAGAACCCAGGGCGCCGAAGGCGTCAAGGAACACT??TATTGCCTTGCTCGGGG?ATGTGGCCGGCTTGCCGGCCGCGCCCCCGTGCAGCGATGCTATGTAAACCAACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTCGAGGGCACGCCTGCCTGGGCGTCACGTCAAAAGACACTCCCAA?CCCATCCAAGGGGAGGGACGTGGTGTTT?GGCCTCCCGTGCCGCAAGGCGCGGTTGGTCGAAGTTGAGGCTGCCGGCATACCGTGTCGGGCACC?GCACGTGGTGGGCGACTTCAAGTTGTTCTCGGTGCAGCGCCCCGGCACGTAGCTAGCGTGTT?GCCCTAAGGACCCAT???CGACCGTAGCGC??TT?GCCGCTCGGACC? Digitaria_similis TGAACCTGCGGAAGGATCATTGTCGTGACCC?TAAACAAAACAGACCGTGAACGTGTCATCAAACTCGTCGGGCTT?CGGCTCGGCTAAGGCCCTCGCCTTCGTTC????CGGAGGAGA?GGGCCACCAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACT??TATTGCATTGCTCGGGG?ATGTGGTTGGCCTGCTGGCCGCAGCCTCGTGTAGCGATTCTATGTTAATCCACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTTTGGTCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCATCCAAGGGGAGGGACGTGGTGTTT?GGCCCCCCGTGCCGCAAGGCGCGGTGGGCCGAAGTTGAGGCTGCCGGCATACCGTGCCGGGCACC?GCACGTGGTGGGCGACATCTAGTTGTTCTCGGTGCAGCGCCCCGGCACTTAGCTAGCACGTTGGCCCTAAGGACCCAT???CGACCGTAGCGC??TTTGCCGCTCGGACC? Digitaria_swalleniana TGAACCTGCGGAAGGATCATTGTCGTGACCC?TAAACAAAACAGACCGTGAACGTGTCATCAAACTCGTCGGGCTT?CAGCTCGGCTAAGGCCCCCGCCTTCGTCT????CGGAGGAGA?GGGCCGCAAA{AGT}GAACCCACGGCGCCGAAGGCGTCAAGGAACACT??TATTGCATTGCTCGGGG?ATGTGGTCGGCCTGCCGGCCGCAGCCTCGTGTAGCGATTCTATGTTAATCCACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTTGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCATCCAAGGGGAGGGACGTGGTGTTT?GGCCCCCCGTGCCGCAAGGTGCGGTGGGCCGAAGTTGAGGCTGCCGGCATATCGTGTCGGGCACC?GCACGTGGTGGGCGACATCAAGTTGTTCTCGGTGCAGCGCCCCGGCACGTAGCTAGCATGTTGGCCCTAAGGACCCAT???CGACCGTAGCGC??TTTGCCGCTCGGACC? Digitaria_tenuis ????????????????TCATTGTCGTGACCC?TAAACAAAACAGACCGTGAACGTGTCATCAAACTCGTCGGGCTT?CGGCTCGGCTAAGGCCCTCGCCTTCGTCC????CGGAGGAGA?GAGCCGCAAAAGAACCCACGGCGCCAAAGGCGTCAAGGAACACT??TATTGCATTGCACGGGGTGTGTGGTCGGCCTGCCGGCTGCAGCCTCGTGTAGCGATTCTATGTTAATCCACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTTTGGTTGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCATCCAAGGGGAGGGACGTGGTGTTT?GGCCCCTCGTGCCGCAAGGCGCGGTGGGCCGAAGTTGAGGCTGCCGGCATACCGTGCCGGGCACC?GCACGTGGTGGGCGACATCAAGTTGTTCTCGGTGCAGCGCCCCGGCACGTAGCTAGCATGTTGGCCCTAAGGACCCAT???CGACCGTAGCGC??TTCGCCGCTCGGACC? Digitaria_velutina TGAACCTGCGGAAGGATCATTGTCGTGACCC?TAAACAAAACAGACTGTGAACGTGTCATCAAAGTCGTCGGGCTT?CGGCTCGGCTAAGGCCCTCGACTTCGTCA????CAAAGGAGA?GGGCCACAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACT??TATTGCCTTGCTCGGGG?ACGTGGCCGGCCTGCTGGCCGCG?CCCCGTGCAGCGATGCTATGTTAACCAACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCTAA?CCCATACAAGGGGAGGGACGTGGTGTTT?GGCCTCCCGTGCCGCAAGGCGCGGTGGGCCGAAGTTGAGGCTGCCGGCAAACCGTGCCGGGCACC?GCACGTGGTGGGCGACTTCAAGTTGTTCTCGGTGCAGCGCCCCGGCTCGTAGCTAGCACATTGGCCCTTAGGACCCAA???CGACCGTAGCGC??TT?GCCGCTCGGACC? Megaloprotachne_albescens TGAACCTGCGGAAGGATCATTGTCGTGACCC?TAAACAAAACCGACCGTGAACGTGTCATCAAAGTCGTCGAGCTT?CGGCTTGGCTTAGGCTCCCGCCTTCGTCT????CGGAGGAGA?GGGCCGCAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACT??TATTGCCTTGCTCTGGG?ATGTGGCCGGCGTGCTGGCCACG?CCCTGTGCAGCGATGCTATGTTAATCAACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGC?AAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCATCTAAGGGAGGGGACGTGGTGTTT?GGCCCCCTGTGC{CT}ACAAGGCGCGGTGGGCCGAAGTTGAGGCTGCCGGCATATCATGTCGGGCACC?GCACGTGGTGGGCGACATTAAGTTGTTCTCGGTGCAGCGCCCCGGCATGTAGCTAGCAT?TTGGCCTT?AGGACCCAT???CGACCGTAGCGG??TTCGCCGCTCGGACC? Panicum_repens TGAACCTGCGGAAGGATCATTGTCGTGACCCTTGAACAAAACAGACCGTGAACGTGTCATCCATGTCGTCGGAGTA?CGGTTCGGCAAAGGCCCCCCACCTTCT?TA???CGTTGGAGAGGGGCCACCAAAGAACCCACGGCGCCGAAGGCGTCAAGGATCACTGATATTGCCATGTTCGGGG?TCATGTTTGGCCTGCCGATCATG?CCTCGCGCAATGTTGCTATCTTAATCCACACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCAAAATGCGATACCTGGTGTGAATTGCAGAATCCCGCGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCTTCTGGTTGAGGGCACGTCTGCCTGGGCGTCACGCCAAAAGACACTCCCAA?CCCACCCTCAGGGACGGACGTGGTGTTT?GGCTCCCCGTGCCTTGTCGCATGGTGGGCTGAAGTTAGGTCTGCCGGCATACCGTGTCGGGCACCGGCATGTGGTGGGCGACAT?AAGTTGTTCTCGATGCAGTGTCCCGGCACGCAGCTAGCTCCTTGGCCTAAATGACCCATTCACGACCGTAGCAT??CTCGACGCTCGGACC? ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M36873] TITLE Digitaria_Sections_Trichachne_and_Trichophorae_Continuous_Characters; LINK TAXA = Taxa1; DIMENSIONS NCHAR=7; FORMAT DATATYPE=Continuous MISSING=? GAP= -; MATRIX [ 10 20 30 ] [ . . . ] Anthaenantia_lanata 0.0 0.95 0.427 0.647 0.0 0.0 0.0 Digitaria_brownii 0.0 0.15 2.075 2.369 3.25 0.95 1.1 Digitaria_californica_var._californica 0.0 0.75 1.6885 1.855 3.75 1.125 0.75 Digitaria_californica_var._villosissima 0.0 0.75 1.6885 1.855 3.75 1.125 0.75 Digitaria_catamarcensis 0.0 0.8 2.4085 2.687 6.45 1.3335 1.35 Digitaria_ciliaris 0.0 0.5 1.8935 2.078 3.15 0.75 0.95 Digitaria_eggersii 0.0 0.15 1.252 1.375 2.85 0.75 1.2 Digitaria_eriantha 0.0 0.85 1.647 1.858 3.0 1.0 1.5 Digitaria_eriostachya 0.0 0.6 1.814 1.94 2.6 0.85 1.5 Digitaria_gerdesii 0.0 0.1 3.775 3.687 2.6 1.2 0.9 Digitaria_hitchcockii 0.0 0.55 1.31 1.5325 2.6 0.95 0.8 Digitaria_insularis 0.0 3.5 1.4115 1.576 4.1 0.85 0.85 Digitaria_laxa 0.0 2.0 0.9125 1.0675 4.75 0.8 1.0 Digitaria_milanjiana 0.0 0.9 0.203 0.5345 3.0 0.85 1.0 Digitaria_neesiana 0.0 0.6 0.2565 0.557 3.75 1.5 3.0 Digitaria_patens 0.0 0.55 1.452 1.701 3.1 0.8 1.0 Digitaria_phaeothrix 0.0 1.35 3.523 3.8835 3.5 1.1 1.9 Digitaria_pittieri 0.0 1.55 1.408 1.826 3.25 0.975 1.3 Digitaria_sacchariflora 0.0 0.9 1.8455 1.985 4.75 1.35 1.1 Digitaria_sanguinalis 0.0 0.55 1.525 1.88 3.05 1.15 0.95 Digitaria_similis 0.0 1.0 1.451 1.6875 5.0 0.75 1.25 Digitaria_swalleniana 0.0 1.05 1.382 1.611 4.9 0.75 0.625 Digitaria_tenuis 0.0 0.6 1.796 2.0585 2.85 0.725 1.0 Digitaria_velutina 0.0 0.65 0.3935 1.101 1.9 0.55 0.0 Megaloprotachne_albescens 0.0 0.45 0.9315 0.213 3.75 1.6 0.0 Panicum_repens 0.0 0.8 1.123 1.752 0.0 0.0 0.0 ; END; BEGIN TREES; TITLE Digitaria_Sections_Trichachne_and_Trichophorae; LINK TAXA = Taxa1; TRANSLATE 1 Anthaenantia_lanata, 2 Panicum_repens, 3 Megaloprotachne_albescens, 4 Digitaria_brownii, 5 Digitaria_californica_var._californica, 6 Digitaria_californica_var._villosissima, 7 Digitaria_catamarcensis, 8 Digitaria_ciliaris, 9 Digitaria_eggersii, 10 Digitaria_eriantha, 11 Digitaria_eriostachya, 12 Digitaria_gerdesii, 13 Digitaria_hitchcockii, 14 Digitaria_insularis, 15 Digitaria_laxa, 16 Digitaria_milanjiana, 17 Digitaria_neesiana, 18 Digitaria_phaeothrix, 19 Digitaria_pittieri, 20 Digitaria_sacchariflora, 21 Digitaria_sanguinalis, 22 Digitaria_similis, 23 Digitaria_swalleniana, 24 Digitaria_velutina, 25 Digitaria_patens, 26 Digitaria_tenuis; TREE TNT_1 = [&R] (1,((2,(((12,18),17),((24,(16,(10,(8,(11,21))))),((3,(((4,((13,15),((19,(23,(26,9))),(((25,(5,6)),(7,(22,(20,14))))))))))))))))); END;