#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on March 28, 2024; 15:16 GMT TreeBASE (cc) 1994-2008 Study reference: Ranwez V., Berry V., Criscuolo A., Fabre P., Guillemot S., Scornavacca C., & Douzery E. 2007. PhySIC: a veto supertree method with desirable properties. Systematic Biology, 56(5): 798-817. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1902] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=74; TAXLABELS Allenopithecus Allocebus Alouatta Aotus Arctocebus Ateles Avahi Brachyteles Bunopithecus Cacajao Callicebus Callimico Callithrix Cebus Cercocebus Cercopithecus Cheirogaleus Chiropotes Chlorocebus Colobus Cynocephalus Daubentonia Erythrocebus Eulemur Euoticus Galago Galagoides Gorilla Hapalemur Homo Hylobates Indri Lagothrix Lemur Leontopithecus Lepilemur Lophocebus Loris Macaca Mandrillus Megaladapis Microcebus Miopithecus Mirza Mus Nasalis Nomascus Nycticebus Ochotona Otolemur Palaeopropithecus Pan Papio Perodicticus Phaner Piliocolobus Pithecia Pongo Presbytis Prolemur Propithecus Pygathrix Rattus Rhinopithecus Saguinus Saimiri Semnopithecus Simias Symphalangus Tarsius Theropithecus Trachypithecus Tupaia Varecia ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3773] TITLE PhySIC_Supertree; LINK TAXA = Taxa1; DIMENSIONS NCHAR=126; FORMAT DATATYPE=Standard SYMBOLS= "0 1" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 ] [ . . . . . . . . . . . . ] Allenopithecus 101000110100000000000000000000000000000000000000011110000000000000011100000000000000000000000000000000000000000000000000000000 Allocebus 101000110110000000000000101000000000000000101100000000000000000000000000000000000000000000000000000000000000000000000000000000 Alouatta 101000110100000000000000000000000000000000000000011000000000000000000000000000000000000000000000001000000000001100000000000000 Aotus 101000110100000000000000000000000000000000000000011000000000000000000000000000000000000000000000001101000000000000000000000000 Arctocebus 101000110111111000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Ateles 101000110100000000000000000000000000000000000000011000000000000000000000000000000000000000000000001000000000001011000000000000 Avahi 101000110110000000000000101000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Brachyteles 101000110100000000000000000000000000000000000000011000000000000000000000000000000000000000000000001000000000001010110000000000 Bunopithecus 101000110100000000000000000000000000000000000000011100000000000000000000000000000000011010000000000000000000000000000000000000 Cacajao 101000110100000000000000000000000000000000000000011000000000000000000000000000000000000000000000001000000000000000000101110000 Callicebus 101000110100000000000000000000000000000000000000011000000000000000000000000000000000000000000000001000000000000000000110000000 Callimico 101000110100000000000000000000000000000000000000011000000000000000000000000000000000000000000000001100111100000000000000000000 Callithrix 101000110100000000000000000000000000000000000000011000000000000000000000000000000000000000000000001100111010000000000000000000 Cebus 101000110100000000000000000000000000000000000000011000000000000000000000000000000000000000000000001110000000000000000000000000 Cercocebus 101000110100000000000000000000000000000000000000011110000000000000010000000110000110000000000000000000000000000000000000000000 Cercopithecus 101000110100000000000000000000000000000000000000011110000000000000011011000000000000000000000000000000000000000000000000000000 Cheirogaleus 101000110110000000000000101000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000 Chiropotes 101000110100000000000000000000000000000000000000011000000000000000000000000000000000000000000000001000000000000000000101101000 Chlorocebus 101000110100000000000000000000000000000000000000011110000000000000011010010000000000000000000000000000000000000000000000000000 Colobus 101000110100000000000000000000000000000000000000011111000000000011000000000000000000000000000000000000000000000000000000000000 Cynocephalus 101000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001 Daubentonia 101000110110000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Erythrocebus 101000110100000000000000000000000000000000000000011110000000000000011010001000000000000000000000000000000000000000000000000000 Eulemur 101000110110000000000000101010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Euoticus 101000110111000000011100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Galago 101000110111000000011010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Galagoides ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Gorilla 101000110100000000000000000000000000000000000000011100000000000000000000000000000000010000010110000000000000000000000000000000 Hapalemur 101000110110000000000000101010001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Homo 101000110100000000000000000000000000000000000000011100000000000000000000000000000000010000010101100000000000000000000000000000 Hylobates 101000110100000000000000000000000000000000000000011100000000000000000000000000000000011100000000000000000000000000000000000000 Indri 101000110110000000000000101000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Lagothrix 101000110100000000000000000000000000000000000000011000000000000000000000000000000000000000000000001000000000001010101000000000 Lemur 101000110110000000000000101010001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Leontopithecus 101000110100000000000000000000000000000000000000011000000000000000000000000000000000000000000000001100110001000000000000000000 Lepilemur 101000110110000000000000101000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Lophocebus 101000110100000000000000000000000000000000000000011110000000000000010000000111010000000000000000000000000000000000000000000000 Loris 101000110111100011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Macaca 101000110100000000000000000000000000000000000000011110000000000000010000000100000000100000000000000000000000000000000000000000 Mandrillus 101000110100000000000000000000000000000000000000011110000000000000010000000110000101000000000000000000000000000000000000000000 Megaladapis 101000110110000000000000101100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Microcebus 101000110110000000000000101000000000000000101011000000000000000000000000000000000000000000000000000000000000000000000000000000 Miopithecus 101000110100000000000000000000000000000000000000011110000000000000011010100000000000000000000000000000000000000000000000000000 Mirza 101000110110000000000000101000000000000000101010100000000000000000000000000000000000000000000000000000000000000000000000000000 Mus 101110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Nasalis 101000110100000000000000000000000000000000000000011111100010110000000000000000000000000000000000000000000000000000000000000000 Nomascus 101000110100000000000000000000000000000000000000011100000000000000000000000000000000011000100000000000000000000000000000000000 Nycticebus 101000110111100010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Ochotona ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Otolemur 101000110111000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Palaeopropithecus 101000110110000000000000101000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Pan 101000110100000000000000000000000000000000000000011100000000000000000000000000000000010000010101010000000000000000000000000000 Papio 101000110100000000000000000000000000000000000000011110000000000000010000000111100000000000000000000000000000000000000000000000 Perodicticus 101000110111110100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Phaner 101000110110000000000000101000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Piliocolobus 101000110100000000000000000000000000000000000000011111000000000010100000000000000000000000000000000000000000000000000000000000 Pithecia 101000110100000000000000000000000000000000000000011000000000000000000000000000000000000000000000001000000000000000000101000100 Pongo 101000110100000000000000000000000000000000000000011100000000000000000000000000000000010000011000000000000000000000000000000000 Presbytis 101000110100000000000000000000000000000000000000011111101000000000000000000000000000000000000000000000000000000000000000000000 Prolemur 101000110110000000000000101010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Propithecus 101000110110000000000000101000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Pygathrix 101000110100000000000000000000000000000000000000011111100011000000000000000000000000000000000000000000000000000000000000000000 Rattus 101101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Rhinopithecus 101000110100000000000000000000000000000000000000011111100010000100000000000000000000000000000000000000000000000000000000000000 Saguinus 101000110100000000000000000000000000000000000000011000000000000000000000000000000000000000000000001100100000100000000000000000 Saimiri 101000110100000000000000000000000000000000000000011000000000000000000000000000000000000000000000001100000000010000000000000000 Semnopithecus 101000110100000000000000000000000000000000000000011111100100000000000000000000000000000000000000000000000000000000000000000000 Simias 101000110100000000000000000000000000000000000000011111100010101000000000000000000000000000000000000000000000000000000000000000 Symphalangus 101000110100000000000000000000000000000000000000011100000000000000000000000000000000011001000000000000000000000000000000000000 Tarsius 101000110100000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000010 Theropithecus 101000110100000000000000000000000000000000000000011110000000000000010000000111001000000000000000000000000000000000000000000000 Trachypithecus 101000110100000000000000000000000000000000000000011111110000000000000000000000000000000000000000000000000000000000000000000000 Tupaia 101000111000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Varecia 101000110110000000000000101011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 ; END; BEGIN TREES; TITLE Tb8658; LINK TAXA = Taxa1; TRANSLATE 1 Varecia, 2 Tupaia, 3 Trachypithecus, 4 Theropithecus, 5 Tarsius, 6 Symphalangus, 7 Simias, 8 Semnopithecus, 9 Saimiri, 10 Saguinus, 11 Rhinopithecus, 12 Rattus, 13 Pygathrix, 14 Propithecus, 15 Prolemur, 16 Presbytis, 17 Pongo, 18 Pithecia, 19 Piliocolobus, 20 Phaner, 21 Perodicticus, 22 Papio, 23 Pan, 24 Palaeopropithecus, 25 Ochotona, 26 Otolemur, 27 Nycticebus, 28 Nomascus, 29 Nasalis, 30 Mus, 31 Mirza, 32 Miopithecus, 33 Microcebus, 34 Megaladapis, 35 Mandrillus, 36 Macaca, 37 Loris, 38 Lophocebus, 39 Lepilemur, 40 Leontopithecus, 41 Lemur, 42 Lagothrix, 43 Indri, 44 Hylobates, 45 Homo, 46 Hapalemur, 47 Gorilla, 48 Galagoides, 49 Galago, 50 Euoticus, 51 Eulemur, 52 Erythrocebus, 53 Daubentonia, 54 Cynocephalus, 55 Colobus, 56 Chlorocebus, 57 Chiropotes, 58 Cheirogaleus, 59 Cercopithecus, 60 Cercocebus, 61 Cebus, 62 Callithrix, 63 Callimico, 64 Callicebus, 65 Cacajao, 66 Bunopithecus, 67 Brachyteles, 68 Avahi, 69 Ateles, 70 Arctocebus, 71 Aotus, 72 Alouatta, 73 Allocebus, 74 Allenopithecus; TREE g6pdi8i7 = [&R] ((((9,(40,10)),(61,71)),((18,64),(69,72))),(36,(45,23))); TREE brca1 = [&R] ((((36,(44,(17,(23,47)))),(69,72)),(5,(26,41))),(30,12)); TREE irbpi1 = [&R] ((((71,((9,61),(10,(62,(40,63))))),(64,(18,(57,65)))),(69,(72,(42,67)))),((23,45),(56,(36,(38,(35,(59,(60,4)))))))); TREE bglob = [&R] (30,(26,((((72,(42,(67,69))),((40,(62,63)),(71,(9,61)))),(64,(18,65))),((55,(35,36)),(47,(23,45)))))); TREE atp7a = [&R] (((5,((36,(28,(23,45))),(63,69))),(26,41)),(30,12)); TREE albui34 = [&R] (((((36,((38,(4,22)),(35,60))),(59,(52,56))),(55,(3,29))),(44,(17,(47,(23,45))))),(67,(71,42))); TREE a2ab = [&R] ((2,(54,((27,(41,(33,14))),(5,((18,(61,62)),((36,59),(44,45))))))),(30,12)); TREE plcb4 = [&R] ((54,(2,((5,((63,69),(36,(28,(23,45))))),(26,41)))),(30,12)); TREE tspy = [&R] ((((((59,(32,74)),(52,56)),(36,((22,(4,38)),(35,60)))),(3,16)),((6,44),(23,45))),(71,(69,(61,9)))); TREE nd5 = [&R] ((2,(5,(((((((16,(11,(13,29))),(3,8)),(19,55)),(36,(22,56))),(44,(17,(47,(23,45))))),(71,61)),(41,27)))),(30,12)); TREE mic12 = [&R] (((64,(18,(57,65))),(((71,(9,61)),(10,(40,(62,63)))),(69,(72,(42,67))))),(36,(45,23))); TREE epsglob = [&R] ((2,(54,((5,((((71,((62,63),(10,40))),(9,61)),((64,(18,(57,65))),(72,(69,(42,67))))),(36,(44,(17,(47,(45,23))))))),((21,26),(53,(14,(51,(33,58)))))))),(30,12)); TREE irbp = [&R] ((((5,((((55,36),(56,(52,59))),(44,(47,(45,23)))),(18,(62,(9,(69,61)))))),((21,((26,49),(27,37))),(53,(((1,51),(41,46)),(14,(39,(58,(31,33)))))))),(2,54)),(25,(30,12))); TREE gam12 = [&R] (26,(((((((36,(35,60)),(38,(4,22))),(52,(56,59))),(29,55)),(17,(47,(23,45)))),((61,(9,71)),((72,(69,(42,67))),(57,64)))),5)); TREE g6pd = [&R] ((((72,(69,(42,67))),(64,(18,(57,65)))),((71,(9,61)),(10,(40,(62,63))))),(36,(45,23))); TREE fut1 = [&R] ((((((10,(40,62)),(71,(9,61))),((72,67),(42,69))),(64,(18,(57,65)))),(36,(17,(47,(23,45))))),(30,12)); TREE xk = [&R] ((55,((74,(32,(59,(56,52)))),(36,(35,(38,(4,22)))))),(45,23)); TREE cyb = [&R] ((12,30),(2,(5,(53,(((20,(39,(34,(((58,(73,(31,33))),(1,((15,51),(41,46)))),(14,(68,(24,43))))))),(((21,70),(26,(49,50))),(27,37))),(54,((((((3,16),(8,((7,29),(11,13)))),(19,55)),((56,59),(36,(35,(22,38))))),((6,(28,(44,66))),(17,(47,(23,45))))),((64,((71,(72,(69,(42,67)))),((40,(63,(10,62))),(9,61)))),(18,(65,57)))))))))); TREE cd46 = [&R] (((17,(47,(23,45))),(36,(22,56))),(18,((10,(63,62)),(71,9)))); TREE vwfi11e12 = [&R] ((((64,((((71,(9,61)),(63,(40,(10,62)))),(72,(42,(67,69)))),(18,(57,65)))),((17,(47,(23,45))),(55,(36,(52,56))))),((53,((39,(14,(58,(31,33)))),(51,(41,46)))),(49,(27,37)))),(30,12)); TREE lzme = [&R] ((((32,((60,(74,22)),(52,36))),(3,(29,(55,(13,8))))),(44,(17,(47,(23,45))))),(62,(10,9))); TREE xing05_SINE = [&R] (71,(((45,23),44),(((36,((22,4),60)),((56,52),32)),(55,((13,29),3))))); TREE PhySIC = [&R] ((30,12),((2,(((((70,21),(37,27)),((50,49),26)),(53,(34,(1,15,51,(46,41)),(43,68,14,24),20,39,(58,(73,(33,31)))))),((((((3,16,8,(13,(29,7),11)),(55,19)),((74,(59,32,56,52)),(((22,38,4),(60,35)),36))),((44,66,6,28),(17,(47,(45,23))))),((61,71,(((63,62),40),10),9),(72,(69,(67,42))),(64,((65,57),18)))),5))),54)); TREE singer03_ALU = [&R] ((((((62,63),10),40),71,9,61),69),45); TREE roos04_SINE = [&R] ((((((((41,46),51),1),(68,14)),((((31,33),73),58),20),39),53),(((27,37),(21,70)),(26,49,48))),45); END;