#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 19, 2024; 14:04 GMT TreeBASE (cc) 1994-2008 Study reference: Wang Y., White M.M., Kvist S., & Moncalvo J. 2016. Genome-wide survey of gut fungi (Harpellales) reveals the first horizontally transferred ubiquitin gene from a mosquito host. Molecular Biology and Evolution, 33(10): 2544–2554. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S19293] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=25; TAXLABELS Aedes_aegypti Amanita_thiersii Anopheles_gambiae Arabidopsis_lyrata Armillaria_mellea Arthroderma_benhamiae Aspergillus_clavatus Backusella_circina Bos_taurus Canis_lupus_familiaris Culex_quinquefasciatus Danio_rerio Hesseltinella_vesiculosa Homo_sapiens Lichtheimia_hyalospora Mucor_circinelloides Penicillium_expansum Piloderma_croceum Rhizopus_oryzae Simulium_vittatum Smittium_culicis_GSMNP Smittium_culicis_ID206W2 Smittium_mucronatum Umbelopsis_ramanniana Zancudomyces_culisetae ; END; BEGIN TAXA; TITLE Taxa2; DIMENSIONS NTAX=25; TAXLABELS Aedes_aegypti Amanita_thiersii Anopheles_gambiae Arabidopsis_lyrata Armillaria_mellea Arthroderma_benhamiae Aspergillus_clavatus Backusella_circina Bos_taurus Canis_lupus_familiaris Culex_quinquefasciatus Danio_rerio Hesseltinella_vesiculosa Homo_sapiens Lichtheimia_hyalospora Mucor_circinelloides Penicillium_expansum Piloderma_croceum Rhizopus_oryzae Simulium_vittatum Smittium_culicis_GSMNP Smittium_culicis_ID206W2 Smittium_mucronatum Umbelopsis_ramanniana Zancudomyces_culisetae ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M36508] TITLE Harpellales_Nucleotide_Alignment; LINK TAXA = Taxa2; DIMENSIONS NCHAR=912; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Aedes_aegypti ATGCAGATCTTTGTGAAGACTTTGACTGGAAAGACCATCACCTTGGAGGTTGAGCCATCCGATACTATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGTATCCCGCCAGATCAGCAGCGTTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCCGACTACAACATCCAGAAGGAGAGCACTCTACATCTTGTTTTGCGTCTCCGCGGAGGTATGCAGATCTTCGTTAAGACTCTGACTGGAAAGACCATCACCTTGGAGGTTGAGCCATCCGATACTATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGTATCCCGCCAGATCAGCAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAAGATGGTCGTACCCTGTCGGATTACAACATCCAGAAGGAGAGTACCCTTCATCTGGTTCTGCGTCTCCGTGGAGGTATGCAGATCTTTGTGAAGACTTTGACTGGAAAGACCATCACCTTGGAGGTTGAGCCATCCGATACTATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGTATCCCGCCAGATCAGCAGCGTTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCCGACTACAACATCCAGAAGGAGAGCACTCTACATCTTGTTTTGCGTCTCCGCGGAGGTATGCAGATCTTCGTTAAGACTCTGACTGGAAAGACCATCACCTTGGAGGTTGAGCCATCCGATACTATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGTATCCCGCCAGATCAGCAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAAGATGGTCGTACCCTGTCGGACTATAACATCCAGAAGGAAAGCACTCTTCATCTGGTTCTGCGTCTCCGTGGTGGA Amanita_thiersii ATGCAGATTTTTGTCAAGACACTCACCGGGAAGACAATTACGTTGGAGGTCGAGTCATCTGACACCATCGACAACGTCAAAGCGAAGATTCAAGATAAGGAGGGTATCCCTCCGGACCAGCAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAGGACGGCCGCACCCTTTCTGACTACAACATTCAGAAGGAATCCACCCTTCATCTCGTCCTTCGTCTGCGTGGTGGTATGCAGATTTTCGTCAAGACTCTGACTGGCAAGACCATCACACTTGAGGTCGAGTCGTCAGACACCATTGACAATGTCAAAGCGAAGATCCAGGACAAGGAGGGTATTCCTCCTGATCAGCAACGACTGATCTTCGCTGGCAAGCAATTAGAGGACGGTCGCACACTCTCTGACTACAACATTCAGAAGGAATCCACCCTTCACCTTGTCCTCCGTCTCCGCGGTGGCATGCAAATTTTTGTCAAGACTCTTACTGGTAAAACAATTACATTGGAAGTTGAGTCGTCGGATACCATCGACAATGTCAAGGCGAAAATTCAGGACAAGGAAGGAATACCTCCAGATCAACAACGTTTAATTTTCGCGGGGAAACAGCTTGAGGACGGTCGTACGCTCTCCGACTACAATATCCAGAAAGAGTCAACACTACACCTTGTTCTCCGTCTGCGTGGTGGCATGCAGATTTTTGTGAAGACTTTGACCGGCAAGACCATTACGCTTGAAGTCGAGTCATCGGACACGATAGACAATGTGAAGGCGAAAATTCAAGATAAAGAAGGAATTCCCCCTGACCAGCAGAGACTTATATTTGCTGGAAAGCAGTTGGAGGATGGAAGGACCCTTTCTGATTATAATATTCAAAAAGAGTCAACTCTTCATCTTGTTCTCCGTCTTCGTGGTGGT Anopheles_gambiae ATGCAGATTTTTGTGAAAACTCTGACCGGTAAGACCATCACCCTCGAGGTCGAACCATCCGATACGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAACATCCAGAAGGAGTCCACCCTTCATCTGGTTCTCCGTCTGCGTGGTGGTATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACTCTGGAAGTTGAGCCATCGGATACGATTGAGAACGTTAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGACCAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATAACATCCAGAAGGAGTCCACCCTTCATCTGGTTCTCCGTCTGCGTGGTGGTATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACCCTCGAGGTCGAACCATCCGATACGATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATAACATCCAGAAGGAGTCCACCCTTCATCTGGTACTCCGTCTGCGTGGTGGTATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACTCTGGAAGTTGAGCCATCGGATACGATTGAGAACGTCAAGGCAAAGATCCAGGACAAGGAGGGAATTCCACCAGATCAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATAACATCCAGAAGGAATCCACTCTTCATCTGGTTCTCCGTCTGCGTGGTGGT Arabidopsis_lyrata ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????ATGCAGATCTTCGTTAAAACTCTCACCGGAAAGACTATCACCCTTGAGGTGGAAAGCTCTGACACCATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAGCAGAGGCTTATTTTCGCCGGAAAGCAGTTGGAGGATGGCCGTACGTTGGCTGATTACAACATCCAGAAGGAATCCACCCTCCACTTGGTTCTCAGGCTCCGTGGTGGTATGCAGATTTTCGTCAAGACCCTAACGGGAAAGACGATTACTCTTGAGGTGGAGAGCTCCGACACCATTGACAACGTGAAGGCCAAGATCCAGGATAAGGAAGGTATCCCTCCGGACCAGCAGAGGTTGATCTTCGCCGGAAAACAGTTGGAGGATGGTCGTACCTTGGCGGATTACAACATCCAGAAGGAGTCGACCCTTCACTTGGTGTTGCGTCTCCGTGGAGGTATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACCATCACCCTTGAAGTGGAGAGCTCCGACACCATTGACAACGTGAAGGCTAAGATCCAGGACAAGGAAGGTATCCCTTTGGACCAGCAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACTTTGGCCGATTACAACATCCAGAAAGAGTCTACTCTTCACTTGGTCCTCCGTCTCCGTGGTGGT Armillaria_mellea ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACGCTCGAGGTCGAATCGTCCGATACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCGGACCAACAACGACTCATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACTTTGTCCGACTATAACATCCAGAAAGAGTCCACTCTCCACCTTGTTCTTCGTCTCCGTGGTGGCATGCAAATCTTTGTCAAGACTTTGACTGGGAAGACAATCACCCTCGAGGTGGAGTCTTCCGATACCATCGACAACGTCAAGGCCAAGATTCAGGATAAGGAAGGCATTCCCCCGGACCAGCAGCGTCTCATCTTTGCTGGGAAGCAGTTGGAAGATGGCCGTACGCTCTCCGATTACAACATCCAGAAAGAGTCCACGCTTCATCTTGTGCTTCGTCTGCGAGGTGGAATGCAGATCTTCGTCAAGACATTGACGGGGAAGACCATCACGCTGGAGGTTGAATCGTCGGATACCATCGATAACGTGAAGGCCAAGATTCAGGACAAAGAAGGCATTCCTCCCGACCAGCAGCGTCTCATTTTTGCTGGCAAACAGTTGGAGGATGGCCGGACCCTCTCTGACTACAACATTCAGAAGGAATCCACACTGCACCTTGTCCTTCGTCTCCGTGGTGGTATGCAAATCTTCGTCAAGACGCTCACTGGCAAGACGATCACCCTCGAGGTGGAATCTTCAGATACCATTGACAATGTGAAAGCCAAGATACAGGACAAGGAAGGTATTCCTCCCGATCAGCAACGACTTATTTTCGCCGGCAAACAGCTGGAAGATGGTCGCACGTTGTCGGATTACAATATCCAGAAGGAGAGTACCCTTCACTTGGTCCTTCGCCTTCGTGGTGGC Arthroderma_benhamiae ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????ATGCAAATTTTCGTCAAGACACTCACCGGAAAGACTATCACCCTCGAGGTGGAGTCCAGCGACACTATTGACAACGTCAAGACCAAGATCCAGGACAAAGAGGGCATCCCACCAGACCAGCAGCGCCTGATCTTCGCAGGAAAACAACTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGAGCACCCTGCACCTCGTCCTTCGTCTCCGCGGTGGCATGCAAATCTTCGTGAAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAATCCAGCGACACCATCGACAACGTCAAGACCAAGATCCAGGACAAAGAAGGCATCCCACCAGACCAGCAGCGCCTGATCTTTGCAGGAAAACAGCTCGAGGACGGCCGGACCCTCTCGGACTACAACATCCAAAAGGAATCAACTCTCCACCTTGTCCTGCGTCTGCGTGGAGGCATGCAGATCTTCGTCAAGACGCTTACGGGCAAAACCATCACGCTCGAGGTCGAGTCCAGCGACACGATAGATAACGTCAAGACAAAGATCCAGGACAAGGAAGGTATTCCGCCAGACCAGCAGCGTCTCATCTTTGCTGGAAAACAGCTCGAGGACGGCCGGACGCTGTCCGATTACAACATCCAGAAGGAGAGCACGTTGCATTTGGTGCTGCGGTTGCGAGGCGGT Aspergillus_clavatus ATGCAGATCTTCGTTAAGACTCTCACCGGCAAGACCATCACTTTGGAGGTCGAGTCGAGCGACACTATTGACAACGTCAAGTCGAAGATTCAGGATAAGGAGGGCATCCCACCTGATCAGCAGCGTTTGATCTTCGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTCTCCGACTACAACATTCAGAAGGAGTCTACTCTGCACCTCGTTCTCCGTCTGCGTGGTGGTATGCAGATTTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCTAGCGATACCATCGACAACGTCAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCCGACCAGCAGCGTTTGATCTTCGCTGGTAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAATCCACTCTTCACCTTGTCCTCCGTCTGCGTGGTGGTATGCAGATCTTTGTCAAGACCCTTACCGGAAAGACCATCACATTAGAGGTTGAGTCTTCAGACACAATCGATAATGTGAAGAGCAAGATTCAAGACAAGGAGGGCATTCCTCCTGACCAGCAGCGTCTCATTTTCGCCGGCAAGCAGCTGGAAGACGGCCGCACCTTGTCCGACTACAACATCCAAAAAGAATCGACTCTTCACCTTGTCCTCCGTTTGCGTGGTGGTATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACGATCACACTGGAGGTGGAGTCTTCGGATACTATCGACAATGTGAAGAGCAAGATCCAAGATAAGGAGGGTATCCCTCCGGACCAGCAGCGTCTTATATTTGCTGGTAAGCAGCTGGAAGATGGGCGGACACTCTCCGACTATAACATCCAGAAGGAGAGCACACTGCACCTGGTGCTGCGTCTCCGTGGTGGT Backusella_circina ???????????????????????????????????????ACTTTGAAGGTTGAGTCTTCCGACTCTATTGATAATGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAGCAACGTCTTATCTTTGCTGGCAAGCAATTAGAAGATGGCCGCACTCTCTCCGACTACAATATCCAGAAGGAATCTACTCTTCATCTTGTTCTCCGTCTTCGTGGTGGTATGCAAATCTTTGTCAAGACCTTGACTGGTAAGACTATTACCTTGGAAGTTGAGTCCTCTGACTCTATTGATAACGTCAAGCAAAAGATCCAAGACAAAGAAGGTATCCCCCCAGACCAGCAGCGTCTTATCTTTGCCGGTAAGCAATTAGAAGATGGCCGCACTCTCTCTGAC---AATATCCAAAAGGAATCTACTCTTCATCTTGTTCTCCGTCTCCGTGGTGGTATGCAAATCTTTGTAAAGACTCTTACTGGCAAGACCATCACCTTGGAAGTTGAATCTTCCGACTCCATCGATAACGTCAAACAAAAGATTCAAGACAAGGAAGGTATCCCCCCAGACCAGCAGCGTCTTATTTTCGCTGGTAAGCAGTTGGAGGATGGTCGCACCTTGTCTGATTACAACATCCAAAAGGAATCTACTCTTCACTTGGTTCTCCGTCTCCGTGGTGGTATGCAAATCTTTGTCAAGACCTTGACCGGTAAGACCATCACCTTGGAGGTTGAATCTTCCGATTCGATTGACAATGTCAAGCAAAAGATTCAGGATAAAGAAGGTATTCCCCCAGACCAGCAACGTCTCATCTTTGCCGGTAAGCAGTTGGAGGATGGTCGCACCTTGTCTGACTATAACATTCAGAAGGAGTCTACTCTTCATTTGGTGCTTCGTCTTCGTGGTGGT Bos_taurus ATGCAGATCTTCGTGAAGACCTTGACCGGCAAAACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGGCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGGGATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGGGATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGGGATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACTCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCTCAAGGGGAGGT Canis_lupus_familiaris ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACTCTGCACCTGGTCCTTCGCCTCAGGGGGGGCATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACTCTGCACCTGGTCCTTCGCCTCAGGGGGGGCATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACTCTGCACCTGGTCCTTCGCCTCAGGGGGGGCATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACTCTGCACCTGGTCCTTCGCCTCAGGGGGGGC Culex_quinquefasciatus ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTGGAGGTCGAGCCCTCTGATACCATTGAAAACGTTAAAGCCAAGATTCAGGATAAGGAGGGAATCCCTCCAGATCAACAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGATGGTCGTACCTTGTCGGACTACAACATCCAGAAGGAGAGCACACTGCATTTGGTACTGCGTCTGCGCGGTGGTATGCAGATATTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTCGAGCCCTCGGATACCATCGAGAATGTTAAGGCCAAGATCCAGGATAAGGAGGGAATCCCTCCAGATCAACAGCGTTTGATCTTCGCTGGTAAGCAGTTGGAGGATGGTCGTACCCTTTCGGACTACAACATCCAGAAGGAGTCTACACTACATCTGGTCCTGCGTCTGCGCGGAGGTATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATTACCCTGGAGGTCGAGCCCTCGGATACCATCGAGAACGTTAAGGCCAAGATCCAAGATAAGGAGGGAATTCCCCCAGATCAACAGCGTCTGATTTTCGCTGGTAAGCAGCTGGAGGATGGTCGTACCTTGTCGGACTACAACATCCAGAAGGAGTCGACCCTTCATCTGGTCCTGCGTCTGCGCGGAGGTATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATCACCCTGGAGGTCGAACCCTCGGATACCATTGAAAACGTTAAGGCCAAGATTCAGGATAAGGAGGGAATTCCCCCAGATCAACAGCGTCTGATCTTCGCTGGTAAGCAGTTGGAGGATGGTCGTACCTTATCGGACTACAACATCCAGAAGGAGTCGACCCTTCATCTGGTCCTGCGTCTGCGCGGAGGT Danio_rerio ATGCAGATCTTTGTGAAGACGCTGACTGGTAAGACCATCACCCTCGAGGTCGAGCCCAGCGACACCATTGAGAATGTCAAGGCTAAAATTCAAGATAAGGAGGGCATTCCTCCTGACCAGCAGCGTCTGATCTTCGCTGGAAAACAGTTAGAGGATGGACGCACCCTGTCCGACTACAACATCCAGAAAGAGTCCACCCTCCACCTGGTGCTCCGCCTCAGGGGTGGCATGCAGATCTTTGTGAAGACGCTGACCGGCAAGACCATCACTCTAGAGGTGGAACCAAGCGACACCATTGAGAACGTCAAGGCTAAAATTCAAGATAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGACGCACCCTGTCCGACTACAACATTCAGAAAGAGTCCACCCTCCACCTGGTGCTGCGTCTGAGAGGCGGTATGCAGATCTTCGTCAAGACTCTGACAGGAAAAACCATCACTCTTGAGGTCGAGCCCAGTGACACCATTGAGAACGTGAAAGCCAAGATTCAAGATAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTTGCTGGCAAACAGCTTGAAGATGGACGCACCCTGTCCGACTACAACATCCAGAAAGAGTCCACCCTCCATCTTGTTCTCCGCCTCAGGGGCGGCATGCAGATCTTCGTGAAGACGCTGACTGGAAAAACCATCACTTTGGAGGTCGAGCCCAGCGACACCATTGAGAACGTCAAGGCTAAAATTCAAGATAAGGAGGGCATCCCACCTGACCAGCAGCGTCTTATCTTTGCCGGCAAGCAGCTTGAAGATGGGCGCACCCTGTCTGACTATAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTCAGGGGTGGT Hesseltinella_vesiculosa ATGCAAATTTTCGTCAAGACTCTTACTGGCAAGACCATCACCTTGGAAGTCGAATCCTCGGACTCTATTGATAACGTCAAGCAAAAGATTCAAGATAAAGAAGGTATCCCTCCTGACCAACAACGTCTTATCTTTGCCGGCAAGCAACTTGAAGATGGCCGTACTCTCTCTGACTACAACATCCAAAAGGAATCCACCTTGCACTTGGTTCTGCGTCTCCGCGGTGGTATGCAAATCTTTGTAAAGACTTTGACTGGCAAGACCATTACTCTCGAAGTTGAATCCTCGGACTCTATTGACAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCTGACCAACAACGCCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTCTCTGACTACAACATCCAAAAGGAATCCACCTTGCACTTGGTTCTGCGTCTCCGCGGTGGTATGCAAATCTTTGTAAAGACTTTGACTGGCAAGACCATTACTCTCGAAGTTGAATCCTCGGACTCTATTGACAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCTGACCAACAACGCCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTCTCTGACTACAACATCCAAAAGGAATCTACTCTCCACCTTGTGCTCCGTCTCCGTGGTGGTATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACTATTACTCTCGAAGTCGAATCCTCGGACTCTATTGACAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCTGACCAACAACGCCTTATCTTTGCTGGCAAGCAACTTGAAGATGGCCGTACTCTCTCTGACTACAACATCCAAAAGGAATCCACCTTGCACTTGGTTCTGCGTCTCCGCGGTGGT Homo_sapiens ATGCAGATCTTCGTGAAGACTCTGACTGGTAAGACCATCACCCTCGAGGTTGAGCCCAGTGACACCATCGAGAATGTCAAGGCAAAGATCCAAGATAAGGAAGGCATCCCTCCTGACCAGCAGAGGCTGATCTTTGCTGGAAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACCCTGCACCTGGTGCTCCGTCTCAGAGGTGGGATGCAAATCTTCGTGAAGACACTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGTGACACCATCGAGAACGTCAAAGCAAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAGCAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCTACCCTGCACCTGGTGCTCCGTCTCAGAGGTGGGATGCAGATCTTCGTGAAGACCCTGACTGGTAAGACCATCACCCTCGAGGTGGAGCCCAGTGACACCATCGAGAATGTCAAGGCAAAGATCCAAGATAAGGAAGGCATTCCTCCTGATCAGCAGAGGTTGATCTTTGCCGGAAAACAGCTGGAAGATGGTCGTACCCTGTCTGACTACAACATCCAGAAAGAGTCCACCTTGCACCTGGTACTCCGTCTCAGAGGTGGGATGCAAATCTTCGTGAAGACACTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGTGACACTATCGAGAACGTCAAAGCAAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCAGCAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCTACCCTGCACCTGGTGCTCCGTCTCAGAGGTGGG Lichtheimia_hyalospora ATGCAAATCTTCGTCAAGACCCTTACTGGCAAAACCATCACTTTGGAGGTGGAGTCATCTGATTCAATCGAGAACGTCAAGAACAAGATTCAAGACAAGGAAGGCATTCCTCCTGATCAGCAACGTCTCATCTTTGCCGGCAAGCAACTTGAAGATGGTCGCACCCTCTCCGATTACAACATTCAAAAGGAATCCACTCTTCACTTGGTACTTCGCCTTCGTGGTGGTATGCAAATCTTTGTCAAGACTCTCACTGGCAAGACCATTACGCTGGAAGTGGAATCATCCGATTCTATTGAGAACGTCAAGAACAAGATCCAAGACAAGGAAGGTATCCCACCAGATCAGCAGCGCTTGATTTTTGCTGGCAAGCAACTTGAAGATGGCCGTACTCTCTCTGATTACAATATCCAAAAGGAATCTACCCTTCACTTGGTATTGCGTCTTCGTGGTGGTATGCAGATCTTTGTCAAGACTTTGACTGGTAAAACTATCACCTTGGAAGTGGAATCATCCGATTCTATTGAAAATGTCAAGAACAAGATCCAAGACAAGGAAGGTATTCCTCCAGATCAGCAGCGCTTGATCTTTGCCGGCAAGCAACTTGAAGATGGCCGTACCCTCTCTGATTACAATATCCAAAAGGAATCTACTTTGCACTTGGTGCTTCGTCTACGTGGTGGTATGCAAATCTTTGTAAAGACATTGACTGGCAAGACCATTACTTTGGAAGTGGAATCATCCGATTCTATTGAAAATGTCAAGAACAAGATCCAAGACAAGGAAGGTATCCCACCAGATCAGCAGCGCTTGATCTTTGCTGGCAAGCAACTTGAAGATGGCCGTACCCTCTCTGATTACAATATCCAAAAGGAATCCACTCTTCACTTGGTGCTTCGTCTCCGTGGTGGT Mucor_circinelloides ATGCAAATCTTTGTCAAGACCCTCACTGGCAAGACCATTACCTTGGAGGTTGAGTCCTCTGACTCCATTGAGAACGTAAAGCAAAAGATTCAAGACAAGGAGGGTATCCCACCAGACCAACAACGTCTCATCTTTGCTGGTAAGCAACTGGAAGATGGCCGCTCTCTCTCTGATTACAACATCCAAAAGGAGTCCACTCTCCACTTGGTGCTCCGTCTTCGTGGTGGTATGCAAATCTTCGTCAAGACCCTTACTGGTAAAACTATCACTCTTGAGGTTGAATCATCCGATTCTATTGAGAACGTAAAGCAAAAGATCCAAGACAAGGAAGGTATTCCCCCAGACCAACAACGTCTTATCTTTGCTGGTAAGCAATTGGAGGATGGCCGCTCTCTCTCTGACTACAACATTCAAAAGGAGTCTACTCTCCACTTGGTGCTCCGTCTTCGTGGTGGTATGCAAATCTTCGTCAAGACTCTCACTGGTAAGACTATCACATTGGAGGTCGAGTCTTCCGATTCCATTGAGAATGTCAAGCAAAAGATTCAAGACAAGGAAGGTATCCCACCAGACCAACAACGTCTCATTTTCGCTGGTAAACAATTAGAGGATGGTCGTTCCCTCTCTGACTACAACATTCAAAAGGAATCTACTCTTCACTTGGTCCTTCGTCTCCGTGGTGGTATGCAAATCTTTGTCAAAACTCTGACTGGTAAGACCATTACCTTGGAAGTGGAATCATCCGATTCCATTGAGAATGTCAAGCAAAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAACAACGTCTCATTTTCGCTGGCAAGCAACTCGAAGATGGTCGCTCTCTTTCTGATTATAACATTCAAAAGGAATCCACCCTCCACTTGGTCCTTCGTCTCCGTGGTGGT Penicillium_expansum ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTTGAGTCCAGCGATACTATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCTGACCAGCAGCGTCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGCACCCTTTCGGATTATAATATCCAAAAGGAGTCCACTCTCCACCTGGTCCTTCGCCTCCGTGGCGGTATGCAAATCTTCGTTAAGACCCTAACTGGAAAGACGATCACCCTCGAGGTCGAGTCTTCTGACACTATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAACGTCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGCACCCTTTCTGATTATAACATTCAGAAGGAATCCACACTTCACCTTGTCCTCCGTCTACGTGGTGGCATGCAAATCTTTGTCAAGACTTTGACTGGAAAGACCATCACACTCGAGGTTGAGAGCTCAGATACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAACGTCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGCACGCTGTCTGATTATAACATTCAAAAAGAATCCACACTTCACCTTGTCCTCCGTCTACGTGGTGGTATGCAAATCTTTGTCAAGACACTTACCGGCAAGACTATCACACTTGAGGTCGAGAGCTCAGACACCATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGTATTCCTCCTGACCAGCAGCGTCTTATCTTCGCTGGTAAGCAGCTGGAGGACGGACGTACTCTTTCGGACTACAACATCCAGAAGGAGTCCACTCTCCACCTGGTGTTGCGTCTGCGTGGCGGC Piloderma_croceum ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACGATAACCCTTGAGGTCGAGTCTTCGGACACAATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGCATTCCCCCCGACCAACAGCGCCTTATCTTCGCTGGTAAACAGCTCGAGGACGGTCGCACTCTCTCCGACTATAACATCCAGAAGGAATCGACTCTTCACCTTGTCCTGCGTCTCCGCGGCGGCATGCAGATTTTCGTTAAGACACTCACGGGAAAGACGATCACTCTTGAGGTTGAATCATCTGACACGATCGACAACGTCAAGGCGAAAATTCAAGACAAGGAGGGCATTCCTCCCGACCAACAGCGCCTTATCTTCGCTGGCAAGCAGCTCGAAGACGGTCGCACTCTCTCCGATTATAATATTCAGAAGGAGTCTACCCTCCATCTCGTCCTCCGTCTTCGTGGTGGGATGCAAATTTTCGTGAAGACGTTGACCGGCAAGACGATCACTCTCGAGGTTGAATCCTCCGACACGATCGATAATGTCAAGGCGAAGATCCAGGACAAGGAGGGTATTCCTCCTGACCAACAGCGTCTTATCTTCGCTGGCAAACAGCTCGAGGACGGTCGAACTCTTTCTGATTATAACATCCAGAAGGAGTCTACTCTCCATCTCGTTCTCCGTCTTCGTGGTGGGATGCAAATTTTCGTGAAGACGTTGACCGGCAAGACCATTACTCTCGAGGTTGAATCGTCAGACACGATCGATAATGTTAAGGCGAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAAGATGGACGCACGTTGTCGGATTATAATATCCAAAAGGAGAGCACACTCCACTTGGTGCTTCGTCTGCGCGGTGGA Rhizopus_oryzae ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????ATGCAAATCTTTGTTAAAACACTTACTGGCAAGACAATCACTTTGGAGGTCGAATCCTCTGATAGTATTGAGAATGTCAAGCAAAAAATCCAAGACAAGGAAGGTATTCCTCCTGATCAACAACGTTTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGTACTTTGAGTGACTACAACATTCAAAAGGAATCCACTCTCCACTTGGTTCTCCGTCTTCGTGGTGGTATGCAAATTTTTGTCAAGACTCTCACTGGTAAGACAATTACTTTGGAAGTCGAGTCTTCTGATAGCATTGAGAATGTCAAGCAAAAGATTCAAGATAAGGAAGGTATTCCTCCTGATCAACAACGTTTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGTACTTTGAGTGACTACAACATTCAAAAGGAATCCACTCTCCACTTGGTTCTCCGTCTTCGTGGTGGTATGCAAATTTTTGTCAAGACTCTCACTGGTAAGACCATCACATTGGAGGTCGAATCTTCTGATAGTATTGAGAATGTCAAGCAAAAGATTCAAGATAAGGAGGGCATTCCTCCTGATCAACAACGACTCATTTTCGCTGGTAAACAATTGGAAGATGGTCGCACTTTAAGTGACTACAATATTCAAAAGGAGTCCACCCTTCACTTGGTTCTCCGTCTTCGTGGTGGT Simulium_vittatum ATGCAAATCTTCGTGAAAACCCTGACGGGTAAGACCATCACCTTGGAGGTTGAGCCGTCCGACACCATCGAAAACGTAAAGGCCAAGATCCAAGATAAGGAGGGCATTCCCCCAGATCAACAACGTCTGATCTTCGCCGGCAAACAATTGGAGGACGGTCGCACTTTGTCGGACTACAACATCCAAAAGGAGTCGACTTTGCACTTAGTGTTGCGTCTGCGAGGTGGTATGCAGATTTTCGTCAAGACTTTGACGGGCAAGACCATCACGCTGGAGGTGGAGCCATCCGACACCATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCAACAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAAGATGGCCGCACCTTGTCTGATTACAACATTCAAAAGGAATCGACACTTCATTTGGTTTTGCGTCTGCGTGGCGGTATGCAAATCTTCGTCAAGACACTGACGGGAAAAACCATCACATTGGAGGTCGAACCTTCGGACACGATTGAGAATGTTAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGACCAACAGCGTCTGATCTTCGCCGGCAAACAGTTGGAGGATGGCCGTACGTTGTCAGATTATAACATCCAAAAGGAGTCTACGCTTCACTTGGTGCTCCGTCTGCGTGGTGGTATGCAAATTTTCGTCAAGACATTGACTGGAAAGACCATCACCTTGGAGGTCGAGCCCTCGGACACAATCGAAAACGTAAAGGCTAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAACAGCGTCTGATCTTCGCTGGCAAACAACTCGAAGATGGCCGCACCTTGTCTGACTACAACATTCAGAAGGAGTCGACCTTGCATTTGGTCTTGCGTCTGCGTGGCGGT Smittium_culicis_GSMNP ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????ATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCCGACACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCGGACCAGCAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCCGACTACAAAATCCAAAAAGAATCTACTCTTCACTTGGTGCTTCGTCTCAGAGGTGGTATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCCGACACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAGCAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCCGACTACAACATCCAAAAAGAATCTACTCTTCACTTGGTGCTTCGTCTCAGAGGTGGTATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCCGACACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAGCAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCTGATTACAACATCCAAAAAGAATCTACTCTTCATTTGGTGCTTCGTCTTAGAGGTGGT Smittium_culicis_ID206W2 ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????ATGCAAATTTTCGTCAAAACTCTAACAGGTAAGACTATCACCCTTGAAGTCGAATCTTCAGACACAATTGACAACGTCAAGCAGAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAGCAACGTCTCATTTTCGCAGGTAAACAGCTCGAAGACGGCCGCACTTTGTCTGACTACAACATCCAAAAAGAATCCACTCTCCACTTGGTTCTACGTCTCAGAGGCGGTATGCAAATTTTCGTAAAGACCCTTACAGGTAAGACTATCACCCTTGAAGTCGAATCTTCAGACACAATTGACAACGTCAAGCAGAAAATTCAAGACAAGGAAGGAATCCCACCAGACCAGCAACGTCTCATTTTCGCAGGTAAACAGCTTGAAGACGGCCGCACTTTATCTGACTACAACATCCAAAAAGAATCCACTCTCCACTTGGTTCTACGTCTCAGAGGTGGTATGCAAATTTTCGTCAAAACTCTGACA------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATCCACTCTCCACTTGGTACTTCGTCTCAGAGGTGGT Smittium_mucronatum ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????ATGCAGATTTTCGTTAAGACTCTAACTGGTAAGACAATTACCCTTGAGGTAGAATCTTCTGACACTATTGACAATGTCAAGCAGAAGATTCAGGATAAGGAAGGAATCCCACCAGACCAGCAGCGTCTTATTTTCGCTGGTAAACAACTTGAAGATGGCCGTACTTTATCTGATTACAACATCCAGAAGGAATCTACTCTTCACTTGGTATTGCGTCTTAGAGGTGGTATGCAAATTTTCGTTAAGACTCTAACTGGTAAGACAATTACCCTTGAAGTTGAATCTTCTGACACTATCGACAATGTCAAACAGAAGATT?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Umbelopsis_ramanniana ATGCAAATCTTCGTTAAGACCTTGACCGGAAAGACCATCACTCTGGAAGTTGAGTCATCCGATACCATTGACAATGTTAAGCAAAAGATTCAAGACAAGGAAGGTATCCCACCGGACCAACAACGTCTCATCTTTGCTGGTAAGCAACTTGAAGATGGCCGTACTCTTTCCGACTACAACATCCAAAAGGAGTCCACCCTCCATTTGGTCCTCCGTCTTCGTGGTGGTATGCAAATCTTCGTCAAGACTTTGACTGGCAAGACCATCACTCTTGAAGTTGAGTCATCCGATACCATTGACAATGTTAAGCAAAAGATTCAAGACAAGGAAGGTATTCCACCGGACCAACAACGTCTCATCTTCGCTGGTAAGCAGCTTGAGGACGGACGCACTCTCTCTGACTACAACATCCAAAAGGAATCCACACTTCATTTGGTCCTCCGTCTTCGTGGTGGTATGCAAATCTTCGTCAAGACTTTGACTGGCAAGACCATCACTCTTGAAGTTGAATCATCCGACACCATTGACAACGTGAAGCAAAAGATCCAAGACAAGGAAGGTATCCCACCGGACCAACAACGTCTCATCTTTGCTGGTAAGCAACTTGAAGACGGCCGTACTCTTTCCGATTACAACATCCAAAAGGAGTCCACCCTTCACTTGGTCCTCCGTCTTCGTGGTGGTATGCAGATTTTCGTCAAGACTTTGACTGGCAAGACCATCACTCTTGAAGTTGAATCATCCGACACCATTGACAACGTGAAGCAAAAGATCCAAGACAAGGAAGGTATCCCACCGGACCAACAACGTCTCATCTTCGCTGGTAAGCAACTTGAGGACGGCCGTACTCTTTCCGACTACAACATCCAAAAGGAATCTACTCTCCATTTGGTCCTTCGTCTTCGTGGCGGT Zancudomyces_culisetae ATGCAGATTTTTGTAAAAACCTTGACAGGCAAGACAATTACACTCGAGGTCGAGCCCTCAGATACCATTGAAAACGTCAAAGCCAAGATTCAGGATAAGGAAGGAATTCCACCAGACCAACAACGTCTTATCTTCGCAGGAAAGCAACTTGAAGATGGACGAACCCTTTCAGACTATAACATCCAGAAAGAGTCTACTCTTCACTTGGTACTTCGTCTGCGTGGTGGTATGCAGATTTTCGTAAAAACTTTGACAGGCAAGACAATTACACTCGAGGTCGAGCCCTCAGATACCATTGAAAACGTCAAAGCCAAGATTCAGGATAAGGAAGGAATTCCACCAGACCAACAACGTCTCATCTTCGCAGGAAAGCAACTTGAAGATGGACGAACCCTTTCAGACTATAACATCCAGAAAGAGTCTACTCTTCACTTGGTACTTCGTCTGCGTGGTGGTATGCAGATTTTCGTAAAAACTTTGACAGGCAAGACAATTACACTCGAGGTCGAGCCCTCAGATACCATTGAAAACGTCAAGGCTAAAATCCAGGACAAGGAAGGGATTCCACCAGACCAACAACGTCTCATCTTCGCAGGAAAGCAACTTGAAGATGGACGAACTCTTTCAGACTATAACATCCAGAAAGAGTCTACTCTTCACTTAGTACTTCGTCTGCGTGGTGGT???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? ; END; BEGIN CODONS; CODONPOSSET * UNTITLED (CHARACTERS = Harpellales_Nucleotide_Alignment) = N: 4-228 232-456 460-684 688-912, 1: 1-3\3 229-231\3 457-459\3 685-687\3, 2: 2-4\3 230-232\3 458-460\3 686-688\3, 3: 3-5\3 231-233\3 459-461\3 687-689\3; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M36507] TITLE Harpellales_Amino_Acid_Alignment; LINK TAXA = Taxa1; DIMENSIONS NCHAR=304; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Aedes_aegypti MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG Amanita_thiersii MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG Anopheles_gambiae MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG Arabidopsis_lyrata ????????????????????????????????????????????????????????????????????????????MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPLDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG Armillaria_mellea MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG Arthroderma_benhamiae ????????????????????????????????????????????????????????????????????????????MQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG Aspergillus_clavatus MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG Backusella_circina ?????????????TLKVESSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD-NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG Bos_taurus MQIFVKTLTGKTITLEVEPSDTIENVKGKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRSRGG Canis_lupus_familiaris MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG Culex_quinquefasciatus MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG Danio_rerio MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG Hesseltinella_vesiculosa MQIFVKTLTGKTITLEVESSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG Homo_sapiens MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG Lichtheimia_hyalospora MQIFVKTLTGKTITLEVESSDSIENVKNKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDSIENVKNKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDSIENVKNKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDSIENVKNKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG Mucor_circinelloides MQIFVKTLTGKTITLEVESSDSIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRSLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDSIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRSLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDSIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRSLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDSIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRSLSDYNIQKESTLHLVLRLRGG Penicillium_expansum MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG Piloderma_croceum MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG Rhizopus_oryzae ????????????????????????????????????????????????????????????????????????????MQIFVKTLTGKTITLEVESSDSIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDSIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDSIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG Simulium_vittatum MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG Smittium_culicis_GSMNP ??????????????????????????????????????????????????????????YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYKIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG Smittium_culicis_ID206W2 ????????????????????????????????????????????????????????????????????????????MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLT------------------------------------------------------ESTLHLVLRLRGG Smittium_mucronatum ????????????????????????????????????????????????????????????????????????????MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKQKI?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Umbelopsis_ramanniana MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG Zancudomyces_culisetae MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG???????????????????????????????????????????????????????????????????????????? ; END; BEGIN TREES; TITLE Harpellales_Bayesian_PolyUBQ_NT; LINK TAXA = Taxa2; TRANSLATE 1 Homo_sapiens, 2 Danio_rerio, 3 Bos_taurus, 4 Canis_lupus_familiaris, 5 Amanita_thiersii, 6 Armillaria_mellea, 7 Piloderma_croceum, 8 Mucor_circinelloides, 9 Umbelopsis_ramanniana, 10 Penicillium_expansum, 11 Lichtheimia_hyalospora, 12 Hesseltinella_vesiculosa, 13 Aspergillus_clavatus, 14 Backusella_circina, 15 Smittium_culicis_GSMNP, 16 Arthroderma_benhamiae, 17 Rhizopus_oryzae, 18 Smittium_culicis_ID206W2, 19 Smittium_mucronatum, 20 Zancudomyces_culisetae, 21 Aedes_aegypti, 22 Anopheles_gambiae, 23 Simulium_vittatum, 24 Culex_quinquefasciatus, 25 Arabidopsis_lyrata; TREE con_50_majrule = [&R] (25:0.2777540185503147,(5:0.524698391472781,(6:0.3244771150831443,7:0.3885197634508158):0.1518080438720864,((2:0.131896333020461,(1:0.1072619560795927,(3:0.06091008475947582,4:0.09775363542981717):0.09221248143687834):0.2447738319823798):0.3854305333609985,(23:0.3662800808292257,((20:0.3933051581025402,22:0.1371192604985088):0.09280756752448586,(21:0.2721465504170136,24:0.1458347748512225):0.08850601824392028):0.08162404819481758):0.03996071805475421):0.1840913906785202,((10:0.2240849952653146,(13:0.2332801661314843,16:0.5196828937623874):0.1285600153248718):0.08101955130077762,(9:0.1104163919654112,(15:0.03133523528933675,(18:0.1169882053953781,19:0.1455242000719983):0.02673985470672842):0.1579733368145729,(12:0.1530025726384182,(14:0.1938641221752361,(11:0.2579363793316704,(8:0.109710055212335,17:0.2636246208794726):0.03812972252461631):0.04560126516381241):0.04544265488074871):0.05221023910814679):0.2864823010076546):0.07009191521718236):0.2777540185503147); END; BEGIN TREES; TITLE Harpellales_Bayesian_PolyUBQ_AA; LINK TAXA = Taxa1; TRANSLATE 1 Aedes_aegypti, 2 Anopheles_gambiae, 3 Bos_taurus, 4 Canis_lupus_familiaris, 5 Culex_quinquefasciatus, 6 Danio_rerio, 7 Homo_sapiens, 8 Simulium_vittatum, 9 Zancudomyces_culisetae, 10 Lichtheimia_hyalospora, 11 Mucor_circinelloides, 12 Rhizopus_oryzae, 13 Backusella_circina, 14 Hesseltinella_vesiculosa, 15 Smittium_culicis_GSMNP, 16 Smittium_culicis_ID206W2, 17 Smittium_mucronatum, 18 Umbelopsis_ramanniana, 19 Arthroderma_benhamiae, 20 Aspergillus_clavatus, 21 Penicillium_expansum, 22 Amanita_thiersii, 23 Armillaria_mellea, 24 Piloderma_croceum, 25 Arabidopsis_lyrata; TREE con_50_majrule = [&R] (25:0.1186557443705585,(22:0.03987696230224894,23:0.0400366656948893,24:0.04147746524971462,(1:0.04159071260098116,2:0.03997393830135659,3:0.09401766813687526,4:0.04019521047562782,5:0.03998878761808088,6:0.04086633673811962,7:0.04042179516172064,8:0.03977615129105084,9:0.04713269405968078):0.3810329370901148,(19:0.1988469870802899,20:0.03828322531195272,21:0.03784810391580921,(13:0.03979017494427264,14:0.04120965628902093,15:0.1064894546022524,16:0.04926905856715817,17:0.05672822293154611,18:0.04091156877878568,(10:0.2114032099748915,11:0.2657474862842764,12:0.04582226043735791):0.2575503415179347):0.2036352025059431):0.2003762420801622):0.1186557443705585); END;