#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 26, 2024; 10:47 GMT TreeBASE (cc) 1994-2008 Study reference: Ekanayaka A.H., Dissanayake A.J., Jayasiri S.C., To-anun C., Jones G., Zhao Q., & Hyde K.D. 2016. Aplosporella thailandica, a novel species of Aplosporellaceae (Botryosphaeriales). Mycosphere, 7(4): 440-447. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S19490] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=11; TAXLABELS Aplosporella_africana_CMW25424 Aplosporella_artocarpi Aplosporella_hesperidica Aplosporella_javeedii_CFCC89657 Aplosporella_longipes_CFCC89661 Aplosporella_papillata_CBS121780 Aplosporella_prunicola_CBS121167 Aplosporella_thailandica_MFLU_16_0615 Aplosporella_yalgorensis_MUCC512 Bagnisiella_examinans_CBS551_66 Saccharata_proteae_CBS115206 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M39751] TITLE Ekanayaka; LINK TAXA = Taxa1; DIMENSIONS NCHAR=918; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Aplosporella_africana_CMW25424 AACAAGGTTTCCGTA-GGTGAACCTGCGGAAGGATCATTACCGAGTTCTGGGTTCTCTCAATCGAGGCCCGCTCTCCCACCCTTTGTGAACTTAACCTCTGTTGCTTTGGCGTGGCCAGCGCT---------GTAAAAGGCGCGGTCGGCGGGGCCTGGCCCCCGCTGGCAAGCTTGCCCGCCAGAGGACTATC---AAACTCTTGTCAGTAAACGATGCAGTCTGA-TCAAACATTTAATTGTTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTTCGAGCGTCATTACACACCTCAAGCTCTGCTTGGTATTGGGCGTCGCCCCCTCTAAATCG-GGGGGCGTGCCTCAAAGACCTCGGCGGTGGCGTCTTTGCCTCAAGCGTAGTAATATTTATTTATAATCTCGCTTTGGAGTCGAAGGCGTCGCCCGCCGGACGAAACCTTTATTATTTTCTATCAAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA????-----GAGAAGTTCGAGAAGGTATGCATCGCATTTTTCCCATGGCGGGGTCTTGGTGGGGTCGCTTGGCGCTA-GCCTCATTTGGCTTCGGCAAAGCACACCAACATTTTGCGACCGT-GCTAACTTCCTTCCA-GGAA----------------------------------------------------------------------------------------------------------------------------------------- Aplosporella_artocarpi AACAAGGTTTCCGTA-GGTGAACCTGCGGAAGGATCATTACCGAGTTCTGGGTTCTCTC-TTCGAGGCCCGCTCTCCCACCCTTTGTGAACTTGACCTCTGTTGCTTTGGCGTGGCCAGCGCT---------GTAAAAGGCGCGGCCGGCGGGGCCTGGCCCCCGCTGGCAAGCTTGCCCGCCAGAGGACTATC---AAACTCTTGTCAGTAAACGATGCAGTCTGA-TCAAACATTTAATTGTTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTTCGAGCGTCATTACACACCTCAAGCTCTGCTTGGTATTGGGCGTCGTCCCCCAA-------ACGGACGTGCCTCAAAGACCTCGGCGGTGGCGTCTCTGCCTCAAGCGTAGTAATATTC-----TTATCTCGCTTTGGAGTCGGAGGCGTCGCCCGCCGGACGAAACCTTTATT-ACTTCTATCAAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAA-----------????TCATCGAGAACTTCGAGAAGGTCAGTA------TTTTCTCAAGGCGGGGTCTTGGTGGGGTCCTTTCGCGCTAAACCTCGTTTGGCTCGGCAAACTCCCACCACCATTTTGCGACCGTGGCTAACCCCGCTCCA-GGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTCTGGAAGTTCGAGACCCCGAAGTACTATGTCACCGTCATCGA Aplosporella_hesperidica AACAAGGTTTCCGTA-GGTGAACCTGCGGAAGGATCATTACCGAGTTCTGGGTTCTCTC-ATCGAGGCCCGCTCTCCCACCCTTTGTGAACTTGACCTCTGTTGCTTTGGCGTGGCCAGCGCT---------GTAAAAAGCGCGGCCGGCGGGGCCTGGCCCCCGCTGGCAAGCTTGCCCGCCAGAGGACTATC---AAACTCTTGTCAGTAAACGATGCAGTCTGA-TCAAACATTTAATTGTTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTTCGAGCGTCATTACACACCTCAAGCTCTGCTTGGTATTGGGCGTCGTCCCCTAA-------ACGGACGTGCCTCAAAGACCTCGGCGGTGGCGTCTTTGCCTCAAGCGTAGTAATACTT-----TTATCTCGCTTTGGAGTCGAAGGCGTCGCCCGCCGGACGAAACCTTTATT-ATTTCTATCAAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA????------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Aplosporella_javeedii_CFCC89657 -----TCCTTCCGTAGGGGGAACCTGCGGAAGGATCATTACCGAGTTCTGGGTTCTCTC-ATCGAGACCCGCTCTCCCACCCTTTGTGAACTTAACCTCTGTTGCTTTGGCGTGGCCAGCGCT---------GTAAAAAGCGCGGTCGGCGGGGCCTGGCCCCCGCTGGCAAGCTTGCCCGCCAGAGGACTATC---AAACTCTTGTCAGTAAACGATGCAGTCTGA-TCAAACATTTAATTGTTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTTCGAGCGTCATTACACACCTCAAGCTCTGCTTGGTATTGGGCGTCGTCCCCTAAA------CGGGACGTGCCTCAAAGACCTCGGCGGTGGCGTCTTTGCCTCAAGCGTAGTAATCTTT-----TTATCTCGCTTTGGAGTCGAAGGCGTCGCCCGCCGGACGAAACCTTTATT-TTTTCTATCAAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAGCCCGGAGG????CCATCGAGAAGTTCGAGAAGGTACGCATCTCATTTTTCCCGTGGCGGGGTCTTGGTGGGGTCGCTTGCCGCTA-GCCTCGTTTGGCTTCGGCAAAGCCCACCGACATTTTGCGACTGT-GCTAAC-TCGTCCCA-GGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTCTGGAAGTTCGAGACCCCGAAGTACTATGTCACCGTCATTGA Aplosporella_longipes_CFCC89661 -----CCCTTCCGTA-GGGGGACCTGCGGAAGGATCATTACCGAGTTCTGGGTTCTCTA-ATCGAGACCCGCTCTCCCACCCTTTGTGAACTTAACCTCTGTTGCTTTGGCGTGGCCAGCGCT---------GTAAAAAGCGCGGCCGGCGGGGCCTGGACCCCGCTGGCAAGCTTGCCCGCCAGAGGACTATC---AAACTCTTGTCAGTAAACGATGCAGTCTGA-TCAAACATTTAATTGTTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCGTCGTCCCCTAA-------ACGGACGTGCCTCAAAGACCTCGGCGGTGGCGTCTTTGCCTCAAGCGTAGTAATATTT-----TTATCTCGCTTTGGAGTCGAAGGCGTCGCCCGCCGGACGAAACCTTTATT-TTTTCTATCAAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA????CCATCGAGAAGTTCGAGAAGGTATGC-TCTCATTTTTCCCATGGCGGGGCTTTGGTGGGGTCGTTTGGCGCTAGCCCTCGTTTGGCTTGCCGACGCCGCACCGCCATTTTCAACAAAATGCTGAC-CCCGCACA-GGAAGCCGCCGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTCTGGAAGTTCGAGACCCCGAAGTACTATGTCACCGTCATTGA Aplosporella_papillata_CBS121780 -------------------------------GGATCATTACCGAGTTCTGGGTTCTCTC-ATCGAGGCCCGCTCTCCCACCCTTTGTGAACTTAACCTCTGTTGCTTTGGCGTGGCCAGCGCTCTCTCGTAAAAAAGAAGCGCGGCCGGCGGGGCCTGGCCCCCGCTGGTAAG-TCGCCCGCCAGAGGACTATC---AAACTCTTGTCAGTAAACGATGCAGTCTGATTCAAACATTTAATTGTTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTTCGAGCGTCATTACACACCTCAAGCTCTGCTTGGTATTGGGCGTCGCCCCTCCCTAAACGAGGGGGCGTGCCTCAAAGACCTCGGCGGTGGCGTCTTTGCCTCAAGCGTAGTAATATTC-----TTATCTCGCTTTGGAGTCGAAGGCGTCGCCCGCCGGACGAAACCTTTAT--TTTTCTATCAAGGTTGACCTCGGA-----------------------T-----------------------????-----GAGAAGTTCGAGAAGGTACGCATCTCATTTTTCCCATGGCGGGGTCTTGGTGGGGTGCTTTGACGCTA-GCCTCGTTTGGCTTCGCCAAAGCCCACCGACATTTTGCGACCGT-GCTAAC-TCCTCCCA-GGAA----------------------------------------------------------------------------------------------------------------------------------------- Aplosporella_prunicola_CBS121167 AACAAGGTTTCCGTA-GGTGAACCTGCGGAAGGATCATTACCGAGTTCTGGGTTCTCTC-ATCGAGGCCCGCTCTCCCACCCTTTGTGAACTAAACCTCTGTTGCTTTGGCGTGGCCAGCGCT---------GTAAAAGGCGCGGTCGGCGGGGCCTGGCCCCCGCTGGCAAGCTTGCCCGCCAGAGGACTATC---AAACTCTTGTCAGTAAACGATGCAGTCTGATTCAAACATTTAATTGTTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTTCGAGCGTCATTACACACCTCAAGCTCTGCTTGGTATTGGGCGTCGCCCCCCT--ACACG-GGGGACGTGCCTCAAAGACCTCGGCGGTGGCGTCTTTGCCTCAAGCGTAGTAATATTC-----TTATCTCGCTTTGGAGTCGAAGGCGTCGCCCGCCGGACGAAACCTTTAT--TTTTCTATCAAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA????------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Aplosporella_thailandica_MFLU_16_0615 AACAAGGTTTCCGTA-GGTG-ACCTGCGGAAGGATCATTACCGAGTTCTGGGTTCTCTC-ATCGAGGCCCGCTCTCCCACCCTTTGTGAACTAAACCTCTGTTGCTTTGGCGTGGCCAGCGCT---------GTAAAAGGCGCGGCCGGCGGGGCCTGGCCCCCGCTGGCAAGCTTGCCCGCCAGAGGACTATC---AAACTCTTGTCAGTAAACGATGCAGTCTGA-TCAAACATTTAATTGTTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTTCGAGCGTCATTACACACCTCAAGCTCTGCTTGGTATTGGGCGTCGTCCCCTAA-------ACGGACGTGCCTCAAAGACCTCGGCGGTGGCGTCTCTGCCTCAAGCGTAGTAATATTC-----TTATCTCGCTTTGGAGTCGGAGGCGTCGCCCGCCGGACGAAACCTTTATT-ACTTCTATCAAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCATAAGGCCGGAGG????TCATCGAGAAGTTCGAGAAGGTCAGT-----ATTTTTCCCATGGCGGGGTCTTGGTGGGGCCCGCCCGCGCTAGGCCTCGTCTGGCTCGGCAAACGCCCACCGA-ATTTTGCGACCGTGGCTAACCCCGCCCCA-GGAAGCCGCCGAGCTCGGTAAGGGTTCCTTCAAGTA--------------------------------------------------------------------------------------------------------- Aplosporella_yalgorensis_MUCC512 ---------------------------GGAAGGATCATTACCGAGTTCTGGGTTCTCTC-ATCGAGGCCCGCTCTCCCACCCTTTGTGAACTAAACCTCTGTTGCTTTGGCGTGGCCAGCGCT---------GTAAAAGGCGCGGTCGGCGGGGCCTGGCCCCCGCTGGCAAGCTTGCCCGCCAGAGGACTATC---AAACTCTTGTCAGTAAACGATGCAGTCTGATTCAAACATTTAATTGTTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTTCGAGCGTCATTACACACCTCAAGCTCTGCTTGGTATTGGGCGTCGCCCCCCT--ACACG-GGGGACGTGCCTCAAAGACCTCGGCGGTGGCGTCTTTGCCTCAAGCGTAGTAATATTC-----TTATCTCGCTTTGGAGTGGAAGGCGTCGCCCGCCGGACGAATCATTTA-------------------------GAGGAAGTAAGCAT-----------T-----------------------????-------GAAGTTCGAGAAGGTATGCATTGCATTTTTCCCATGGCGGGGTCTTGGTGGGGTCGCTTGGCGCTA-GCCTCGTTTGGCTTCGCCAAAGCCCACCAACATTTTGCGACCGT-GCTAATAGCCTCCCA-GGAAGCCGCCGAGCTCGGCAAGGGTCC------------------------------------------------------------------------------------------------------------------ Bagnisiella_examinans_CBS551_66 AACAAGGTTTCCGTA-GGTGAACCTGCGGAAGGATCATTACCGAGTTCTGGGTTCTCTC-TTCGAGGCCCGCTCTCCCACCCTTTGTGAACTTGACCTCTGTTGCTTTGGCGTGGCCAGCGCT---------GTAAAAGGCGCGGCCGGCGGGGCCTGGCCCCCGCTGGCAAGCTTGCCCGCCAGAGGACTATC---AAACTCTTGTCAGTAAACGATGCAGTCTGA-TCAAACATTTAATTGTTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTTCGAGCGTCATTACACACCTCAAGCTCTGCTTGGTATTGGGCGTCGTCCCCCAA-------ACGGACGTGCCTCAAAGACCTCGGCGGTGGCGTCTCTGCCTCAAGCGTAGTAATATTC-----TTATCTCGCTTTGGAGTCGGAGGCGTCGCCCGCCGGACGAAACCTTTATT-ACTTCTATCAAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA????GAGAAGGAGACCAAGACCAAGTCCACC---GGCAAGACCCTCCTCGAGGCCATCGACAACATCGACGCCCCCGGCCCCTCCGCGATTGGCGGCATTGGCACGGT-CCCCGTCGGCCGTGTCGAGACCGGTACCATCAAGGCCGGCATGGTCGTCACCTTCGCCCTCAAGTCCGTCGAGATGCACCACGAGCAGCTCACCGAGGGTGTCCCCGGTGACAACGTCGGCTTCAACGTCAAGAAGAACGACCCCCCCAAGGGCTGCGTCATCGTCCTCAA Saccharata_proteae_CBS115206 AACAAGGTTTCCGTA-GGTGAACCTGCGGAAGGATCATTAACGAGTTCTGGGTCC-----TTCGGGGCCCGTCCTCCAACCCTTTGTCTAC--AAACCACGTTGCTTCGGCG---------------------GGCAGCCGGGGGTCCGCCCCGCGCGGCTTCCCCGGGTCCA-CTGCCCGCCGGAGGATTACCACAAAACCCTTGCTTTGAAACAATGCAGTCTGA-CCGAATATCAAATATTCTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCACTGCTTGGTATTGGGCCCCGTCCTCAC---------CGGGCGGGCCTTAAAGACCTCGGCGGCGGCGTCGTAGCCTCAAGCGTAGTAATTCTT--------TCTCGCTTTGGAGGCCGCGGCGTCTCCCGCCGGACGAACCTTTTTA--CTTTCTATCAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA????GAGGGGCAGTGTTGGTGGGGTTTCGCA---CGCTTTTCTCATTTCGGGGCTCGGCAAAACACCATGAGCTCTGGCCCCGACACTGCTTCATGTCTTGGTCCTCT-CTCTCTCAACGATGCTAACTCTCGCCACA-GGAAGCCGCCAAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAGCGCGGTATCACC-------------------------------------------------------- ; END; BEGIN TREES; TITLE Ekanayaka_MP_analysis; LINK TAXA = Taxa1; TRANSLATE 1 Aplosporella_africana_CMW25424, 2 Aplosporella_artocarpi, 3 Aplosporella_hesperidica, 4 Aplosporella_javeedii_CFCC89657, 5 Aplosporella_longipes_CFCC89661, 6 Aplosporella_papillata_CBS121780, 7 Aplosporella_prunicola_CBS121167, 8 Aplosporella_yalgorensis_MUCC512, 9 Bagnisiella_examinans_CBS551_66, 10 Saccharata_proteae_CBS115206, 11 Aplosporella_thailandica_MFLU_16_0615; TREE PAUP_1 = [&R] (10:66.5,(9:82.0,((2:11.0,11:9.0):13.0,((3:3.0,(4:17.0,5:28.0):5.0):3.0,(6:10.0,(1:9.0,(7:0.0,8:8.0):7.0):7.0):7.0):14.0):59.0):66.5):0.0; END;