@ARTICLE{TreeBASE2Ref26155,
author = {Meng Wang and Hong Yue and Kewei Feng and Pingchuan Deng and Xiaojun Nie and Weining Song},
title = {Genome-Wide Identification, Phylogeny and Expressional Profiles of Mitogen Activated Protein Kinase Kinase Kinase (MAPKKK) Gene Family in Bread Wheat (Triticum aestivum L.)},
year = {2016},
keywords = {Wheat, MAPKKKs, Gene family, Expression profiles},
doi = {},
url = {http://},
pmid = {},
journal = {BMC genomics},
volume = {},
number = {},
pages = {},
abstract = {Mitogen-activated protein kinase kinase kinases (MAPKKKs) as the important components of MAPK cascades, play a crucial role in plant growth and development as well as stresses response. Although this family has been systematically studied in many plant species, little is known about MAPKKK genes in wheat (Triticum aestivum L.), especially those involved in the regulatory network of stress processes. In this study, we identified 155 wheat MAPKKK genes through a genome-wide search method based on the latest available wheat genome information, of which 29 belonged to MEKK, 11 to ZIK and 115 to Raf subfamily, respectively. Then, chromosome localization, gene structure and conserved protein motifs and phylogenetic relationship as well as co-expression network of these TaMAPKKKs were systematically analyzed and supported the prediction. Furthermore, a total of 11 homologous groups between A, B and D sub-genome and 24 duplication pairs among them were detected, which contributed to the expansion of wheat MAPKKK gene families. Finally, the expression profiles of these MAPKKKs during development and under different abiotic stresses were investigated using the RNA-seq data. Additionally, 10 tissue-specific and 4 salt-responsive TaMAPKKK genes were selected to validate their expression level through qRT-PCR analysis. This study for the first time report the genome organization, evolutionary features and expression profiles of the wheat MAPKKK gene family, which lays the foundation for further functional analysis of wheat MAPKKK genes, and will contribute to better understanding the roles and regulatory mechanism of MAPKKKs in wheat.}
}
You have reached this page using a special URL that is intended to be used
by journal editors and reviewers or referees of a paper that is under
consideration for publication. This URL gives you access to the submitted
data and metadata associated with analyses and results presented in the
paper under review. Please carefully examine the data paying special
attention to the following:
The citation data (authors, year, citation, abstract) should be
complete, except for information that is not yet known (e.g. volume or
page numbers).
Verify that nexus files are error-free and executable by software
programs (e.g. PAUP, Mesquite, MacClade, etc). Please make sure that the
taxon labels for trees are identical, or a subset of, the taxon labels in
data matrices connected by way of an analysis. If taxon labels in trees do
not match with taxon labels in associated data matrices, the data will not
be useful to the scientific community.
Verify that data are not missing and that opportunities to supply
valuable metadata are not overlooked. For example, TreeBASE can store
Genbank accession numbers, museum voucher IDs, latitude and longitudes for
specimen localities, character names and character state names for
morphological data, etc. Including these metadata are sometimes overlooked
by submitting authors, yet sharing this metadata is extremely valuable to
the scientific community. Please use your power as a reviewer to encourage
the sharing of richly-annotated metadata.
Verify that analyses are not missing and that, where possible, analysis
entries include software commands (e.g. the contents of a PAUP block or
MrBayes block) so that analyses can be replicated easily (e.g. commands
that describe substitution models, data partitions, and heuristic search
parameters).
Verify that taxon labels are mapped against TreeBASE's taxonomic
dictionary. Data in TreeBASE can only be found using a taxon name search if
the taxon labels are properly mapped.
By clicking the 'OK' button below, you agree to keep these data
confidential; you agree not to retain these data after completing your report
to the journal editor; you agree not to use these data or knowledge of these
data for the purposes of your research until and unless the paper under
review has been published and the data have been made available to the
general public; you agree to keep the URL confidential.
Citation title: "Genome-Wide Identification, Phylogeny and Expressional Profiles of Mitogen Activated Protein Kinase Kinase Kinase (MAPKKK) Gene Family in Bread Wheat (Triticum aestivum L.)".
Study name: "Genome-Wide Identification, Phylogeny and Expressional Profiles of Mitogen Activated Protein Kinase Kinase Kinase (MAPKKK) Gene Family in Bread Wheat (Triticum aestivum L.)".
This study is part of submission 19638
(Status: In Progress).
Citation
Wang M., Yue H., Feng K., Deng P., Nie X., & Song W. 2016. Genome-Wide Identification, Phylogeny and Expressional Profiles of Mitogen Activated Protein Kinase Kinase Kinase (MAPKKK) Gene Family in Bread Wheat (Triticum aestivum L.). BMC genomics, .
Authors
Wang M.
Yue H.
Feng K.
Deng P.
Nie X.
Song W.
Abstract
Mitogen-activated protein kinase kinase kinases (MAPKKKs) as the important components of MAPK cascades, play a crucial role in plant growth and development as well as stresses response. Although this family has been systematically studied in many plant species, little is known about MAPKKK genes in wheat (Triticum aestivum L.), especially those involved in the regulatory network of stress processes. In this study, we identified 155 wheat MAPKKK genes through a genome-wide search method based on the latest available wheat genome information, of which 29 belonged to MEKK, 11 to ZIK and 115 to Raf subfamily, respectively. Then, chromosome localization, gene structure and conserved protein motifs and phylogenetic relationship as well as co-expression network of these TaMAPKKKs were systematically analyzed and supported the prediction. Furthermore, a total of 11 homologous groups between A, B and D sub-genome and 24 duplication pairs among them were detected, which contributed to the expansion of wheat MAPKKK gene families. Finally, the expression profiles of these MAPKKKs during development and under different abiotic stresses were investigated using the RNA-seq data. Additionally, 10 tissue-specific and 4 salt-responsive TaMAPKKK genes were selected to validate their expression level through qRT-PCR analysis. This study for the first time report the genome organization, evolutionary features and expression profiles of the wheat MAPKKK gene family, which lays the foundation for further functional analysis of wheat MAPKKK genes, and will contribute to better understanding the roles and regulatory mechanism of MAPKKKs in wheat.
@ARTICLE{TreeBASE2Ref26155,
author = {Meng Wang and Hong Yue and Kewei Feng and Pingchuan Deng and Xiaojun Nie and Weining Song},
title = {Genome-Wide Identification, Phylogeny and Expressional Profiles of Mitogen Activated Protein Kinase Kinase Kinase (MAPKKK) Gene Family in Bread Wheat (Triticum aestivum L.)},
year = {2016},
keywords = {Wheat, MAPKKKs, Gene family, Expression profiles},
doi = {},
url = {http://},
pmid = {},
journal = {BMC genomics},
volume = {},
number = {},
pages = {},
abstract = {Mitogen-activated protein kinase kinase kinases (MAPKKKs) as the important components of MAPK cascades, play a crucial role in plant growth and development as well as stresses response. Although this family has been systematically studied in many plant species, little is known about MAPKKK genes in wheat (Triticum aestivum L.), especially those involved in the regulatory network of stress processes. In this study, we identified 155 wheat MAPKKK genes through a genome-wide search method based on the latest available wheat genome information, of which 29 belonged to MEKK, 11 to ZIK and 115 to Raf subfamily, respectively. Then, chromosome localization, gene structure and conserved protein motifs and phylogenetic relationship as well as co-expression network of these TaMAPKKKs were systematically analyzed and supported the prediction. Furthermore, a total of 11 homologous groups between A, B and D sub-genome and 24 duplication pairs among them were detected, which contributed to the expansion of wheat MAPKKK gene families. Finally, the expression profiles of these MAPKKKs during development and under different abiotic stresses were investigated using the RNA-seq data. Additionally, 10 tissue-specific and 4 salt-responsive TaMAPKKK genes were selected to validate their expression level through qRT-PCR analysis. This study for the first time report the genome organization, evolutionary features and expression profiles of the wheat MAPKKK gene family, which lays the foundation for further functional analysis of wheat MAPKKK genes, and will contribute to better understanding the roles and regulatory mechanism of MAPKKKs in wheat.}
}
TY - JOUR
ID - 26155
AU - Wang,Meng
AU - Yue,Hong
AU - Feng,Kewei
AU - Deng,Pingchuan
AU - Nie,Xiaojun
AU - Song,Weining
T1 - Genome-Wide Identification, Phylogeny and Expressional Profiles of Mitogen Activated Protein Kinase Kinase Kinase (MAPKKK) Gene Family in Bread Wheat (Triticum aestivum L.)
PY - 2016
KW - Wheat
KW - MAPKKKs
KW - Gene family
KW - Expression profiles
UR - http://dx.doi.org/
N2 - Mitogen-activated protein kinase kinase kinases (MAPKKKs) as the important components of MAPK cascades, play a crucial role in plant growth and development as well as stresses response. Although this family has been systematically studied in many plant species, little is known about MAPKKK genes in wheat (Triticum aestivum L.), especially those involved in the regulatory network of stress processes. In this study, we identified 155 wheat MAPKKK genes through a genome-wide search method based on the latest available wheat genome information, of which 29 belonged to MEKK, 11 to ZIK and 115 to Raf subfamily, respectively. Then, chromosome localization, gene structure and conserved protein motifs and phylogenetic relationship as well as co-expression network of these TaMAPKKKs were systematically analyzed and supported the prediction. Furthermore, a total of 11 homologous groups between A, B and D sub-genome and 24 duplication pairs among them were detected, which contributed to the expansion of wheat MAPKKK gene families. Finally, the expression profiles of these MAPKKKs during development and under different abiotic stresses were investigated using the RNA-seq data. Additionally, 10 tissue-specific and 4 salt-responsive TaMAPKKK genes were selected to validate their expression level through qRT-PCR analysis. This study for the first time report the genome organization, evolutionary features and expression profiles of the wheat MAPKKK gene family, which lays the foundation for further functional analysis of wheat MAPKKK genes, and will contribute to better understanding the roles and regulatory mechanism of MAPKKKs in wheat.
L3 -
JF - BMC genomics
VL -
IS -
ER -
Go to search
Citation
Taxa
Matrices
Trees
Analyses
Citation title: "Genome-Wide Identification, Phylogeny and Expressional Profiles of Mitogen Activated Protein Kinase Kinase Kinase (MAPKKK) Gene Family in Bread Wheat (Triticum aestivum L.)".
http://purl.org/phylo/treebase/phylows/study/TB2:S19638
Nexus
NeXML
