#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on March 28, 2024; 23:53 GMT TreeBASE (cc) 1994-2008 Study reference: Giugliano L., Collevatti R., & Colli G. 2007. Molecular dating and phylogenetic relationships among Teiidae (Squamata) inferred by molecular and morphological data. Molecular Phylogenetics and Evolution, 45(1): 168-179. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1973] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=18; TAXLABELS Ameiva_ameiva_1 Ameiva_ameiva_2 Aspidoscelis_gularis Callopistes_flavipunctatus Callopistes_maculatus_1 Callopistes_maculatus_2 Cercosaura_ocellata Cnemidophorus_ocellifer_1 Cnemidophorus_ocellifer_2 Crocodilurus_amazonicus_1 Crocodilurus_amazonicus_2 Dicrodon_guttulatum Dracaena_guianensis_1 Dracaena_guianensis_2 Kentropyx_altamazonica_1 Kentropyx_altamazonica_2 Teius_teyou Tupinambis_teguixin ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3001] TITLE 12Sand16S; LINK TAXA = Taxa1; DIMENSIONS NCHAR=807; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Ameiva_ameiva_1 GTTTATCCGCCAGAGGATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTCCCAACCCTGCCTAGAGGAGCCTGTTTCATAATCGATAACCCCCGCTCAACCCAACCTTCCCTCG---AACAT-C--CCAGCCTATATACCGCCGT-CTTACTTTTAGCTTACCTTCTGAAAGAAAC-ACAGTAAGCACAATAG------TC-CC--CAACTAGAAAGTCAGGTCAAGGTGTAGCTTATGGGAAGGAGAAAATGGGGTACATTTTCT-GTC-ACAGAACA--C-CC--ACGGAA-AAT--ATTC-TGAAA-TAAAATATAAGAAGGCGGATTTAGCAGTAAGAACGGCCGCGGGACCCTACACCGTGCAAAGGTAGCATAATCATTTGTCATCTAAATAGTGACTAGTATGAATGGCCCAATGAGGACTTTCCTGTCTCTTGTAACCAATCAATGAAACTGATCTTTCAGTCCAAAAGCTGA-AATATTTACACAAGACGAAAAGACCCTGTGGAAC-TTT-AA-GTGCTAATCAAC-A---CATGACACAGACACTTTTAGTTGGGGCAACTTTGGAACAAAACAAAACTTCCAA-TACA-AAG-ACCACCTCC-GAC--AAACCAAGGC-CCACACGCCAATGTT-TGCCTC-TT--A-TACT-GATCCAGTAC-TACTGATCAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAGCGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCAAACAGTGCAGCAGCTGT Ameiva_ameiva_2 GTTTATCCGCCAGAGGATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTCCCAACCCTGCCTAGAGGAGCCTGTTTCATAATCGATAACCCCCGTTCAACCCAACCTTCCCTCG---AACAT-C--CCAGCCTATATACCGCCGT-CTTACTTCTAGCTTACCTTCTGAAAGAAAC-ACAGTAAGCACAATAG------TC--C--CAACTGAAAAGTCAGGTCAAGGTGTAGCTTATGGGAAGGAGAAAATGGGCTACATTTTCT-GTC-ACAGAACA--C-CC--ACGGAA-AAT--ATTC-TGAAA-TAAAATATATAAAGGCGGATTTAGCAGTAAGAACGGCCGAGGGATCCTACACCGTGCAAAGGTAGCATAATCATTTGTCATCTAAATAGTGACTAGTATGAATGGCCCAATGAGGACTTTCCTGTCTCTTGTAACCAATCAATGAAACTGATCTTTCAGTCCAAAAGCTGA-AATATTTACACAAGACGAAAAGACCCTGTGGAAC-TTT-AA-GTGCTAATCAAC-A---CATGACACAGACACTTTTAGTTGGGGCAACTTTGGAACAAAACAAAACTTCCAA-TACA-AAG-ACCACCTCC-GAC--AAACCAAGGC-CCACACGCCAATGTT-TGCCTC-TT--A-TACT-GATCCAGTAT-TACTGATCAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAGCGGGGCTTACGACCTCGATGTTGGATCAGGCCCCCCAAACAGTGCAGCAGCTGT Aspidoscelis_gularis ATTTGTCCGCCAGAAAATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTCCCACTTCTACCTAGAGGAGCCTGTTTCATAATCGATAACCCCCGCTCAACCCGACCCCTCCTTG---AA-TCACATTCAGCCTATATACCGCCGT-C---CTCTT-GCTTACCCTTTGAAAGACACAACAGTAAGCCCAATAG------TT-AAT-TAACTAAAAAATCAGGTCAAGGTGTAGCTTATGGAGAGGAGAAAATGGGCTACATTCTCTA-TT-ATAGAGCA----CC--ACGGAA-AGT--ACCC-TGAAA-CAAAGTACACAAAGGTGGATTTAGTAGTAAGAACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCATCTAAATAATGACTAGTATGAATGGCCCTATGAGGACTTCCCTGTCTCTTGTAACCAATCAATGAAACTGATCCCCCAGTCCAAAAGCTGG-GATAAAATCACAAGACGAAAAGACCCTGTGGAACTTAT-AA-GTGCCAATCAACAA---AATGACACAATCACTTTTAGTTGGGGCAACTTTGGAACAAAACAAAACTTCCAATT-TATGATAATAATCTA--ACCC-AAAATTAGGT-CCACACACCAACCTT-TGACCA-AC--A--ATT-GACCCAGTAT-TACTGATTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGCCCAAATCGACGAGCGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCAAACAGTGCAGCAGCTGT Callopistes_flavipunctatus ATTTGTCCGCCAGAAGATTACGGGCGAAAGCCTAAAATTCAAAAGACTTGACGGTGTCTCAACCCTGCCTAGAGGAGCCTGTTCCATAATCGATAATCCCCGATCAACCCGACCACCCATTG------CC-AAATCAGCCTATATACCGCCGT-CAC-----CAGCTTACCCTTTGAAAGAACAAC-AGTAAGCAAAATAG--CCC----CTT-AAGCTAAAAAGTCAGGTCAAGGTGTAGCTAATGGGGTGGAGGAAATGGGCTACATTTTCTA--AGATAGACCATTCTCA--ACGAAA-TACT-GTTC-TGAAA-C-CAGCGTATGAAGGAGGATTTAGCAGTAAGAACGGCCGCGGGACTCTCCACCGTGCAAAGGTAGCATAATCACTTGTCTCCTAAATAGAGACTAGTATGAATGGCCAAATGAAGATTTACCTGTCTCTTATAGTCAATCTATGAAACTGATCTCTCAGTACAAAAGCTGA-GATAAAAACACAAGACGAAAAGACCCTGTGGAACTTTTAAACCTGCC-ACCACC-AT-C-ATGGTCAAGCCGCTTTCAGTTGGGGCAACTTTGGAATAAAACAAAACTTCCAA-T-CA-AGGAG-AA-CACCAGT-CAACT-GAAGGT-TTACACACCAACAGT-ATCTCC-CC-TA-CA-T-GACCCAGTAT-TACTGACTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCCTAGAGCCCAAATCGAAGAGCGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCAAACAGTGCAGCAGCTGT Callopistes_maculatus_1 CTTTGTTCGCCAGAAAATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTCTCAACCCTACCTAGAGGAGCCTGTTCCATAATCGATAATCCCCGATCAACCCGACCACCCATTG-----TCC-CATTCAGCCTATATACCGCCGT-CGC-----CAGCTTACCTTTTGAAAGACAAAC-AGTAAGCCCAATAGCCCCCTTTACTTAAAGCTAAAAAGTCAGGTCAAGGTGTAGCTTATAGGGTGGAGGAAATGGGCTACATTTTCTAC-AATTAGA-CA----AA--ACGAAC-TACT-GTCC-TGAAA-C-GGACTTACGAAGGTGGATTTAGCAGTAAGAACGGCCGCGGGATTCTCCACCGTGCAAAGGTAGCATAATCACTTGTCCCCTAAATAGCGACTAGTATGAATGGCCAAATGAAGATTTACCTGTCTCTTGTAGTTAATCTGTAAAACTGATCTTTCAGTCCAAAAGCTGA-AATAAAAACACAAGACGAAAAGACCCTGTGGAACTTTTAAA-CTGCC-GCCACC-AC-C-ATGGCCCAGCCGCTTTCAGTTGGGGCAACTTTGGAAATAAGCAAAACTTCCAA-T-CA-AGGAG--A-CCACATC-CACCTAG-AGGT-TAACACACCGACAAC-ACC-CT-CC-TA-AACT-GATCCAGTAC-TACTGACCAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCCTAGAGTCCCAATCGAAGAGCGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCAAACAGTGCAGCAGCTGT Callopistes_maculatus_2 CTTTGTTCGCCAGAAAATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTCTCAACCCTACCTAGAGGAGCCTGTTCCATAATCGATAATCCCCGATCAACCCGACCACCCATTG-----TCC-CATTCAGCCTATATACCGCCGT-CGC-----CAGCTTACCTTTTGAAAGACAAAC-AGTAAGCCCAATAGCCCCCTTTACTTAAAGCTAAAAAGTCAGGTCAAGGTGTAGCTTATAGGGTGGAGGAAATGGGCTACATTTTCTAC-AATTAGA-CA----AA--ACGAAC-TACT-GTCC-TGAAA-C-GGACTTACGAAGGTGGATTTAGCAGTAAGAACGGCCGCGGGATTCTCCACCGTGCAAAGGTAGCATAATCACTTGTCCCCTAAATAGCGACTAGTATGAATGGCCAAATGAAGATTTACCTGTCTCTTGTAGTTAATCTGTAAAACTGATCTTTCAGTCCAAAAGCTGA-AATAAAAACACAAGACGAAAAGACCCTGTGGAACTTTTAAA-CTGCC-GCCACC-AC-C-ATGGCCCAGCCGCTTTCAGTTGGGGCAACTTTGGAAATAAGCAAAACTTCCAA-T-CA-AGGAG--A-CCACATC-CACCTAG-AGGT-TAACACACCGACAAC-ACC-CT-CC-TA-AACT-GATCCAGTAC-TACTGACCAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCCTAGAGTCCCAATCGAAGAGCGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCAAACAGTGCAGCAGCTGT Cercosaura_ocellata ACCCATCCGCCAGAAAATTACGAGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTC-CCA-CCTTCCTAGAGGAGCCTGTTCCATAATCGACAACCCACGATATACCCAACCACTTTTAG------TC-CTTTCAGCCTATATACCGCCGT-CACA-TTTTAGCCTACCTTTCAAAAGAACCTA-AGTGAGCTAAATAG-------T-ATT-ATACTAACAAGTCAGGTCAAGGTGTAGCTTATAAAGTGGAGGAAATGGGCTACATTATTTA--CACTA-A--A-T-TAC--ACGAACTTATTATTCCATGAAA-A-AGAAG-ATGAAGGCGGATTTAGCAGTAATAACGGCCGCGGGATCCTCCACCGTGCAAAGGTAGCATAATCACTTGTCTCCTAAATAGTGACTAGTATGAACGGCCTAATGAAGATTTTACTGTCTCTTGCAGCCAATCTGTGAAACTAATTTATTAGTACAAAAGCTAATATTAAT-ACATAAGACGAAAAGACCCTGTGGAAC-TTT-AA-GCATAATTCATCAA----ATGACACCACTGCTTTTAGTTGGGGCAACTTTGGAAATAAACAAAACTTCC------A-A-----CA--AC--AA---A---TAAGAT-AAACATATCTT---T--CCTCA-CC--C-T-TT-GACCCAGCGCTTGCTGACCAAAGAACCAAGCTACCCCAGGGATAACAGCGCCATCCCCTCCCAGAGCCCAAATCGACGAGCGGGGTTTACGACCTCGATGTTGGATCAGGGCCCCCAAACAGTGCAACAGCTGT Cnemidophorus_ocellifer_1 ACCTGTCCGCCAGAGAATT-CGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTCCCAATTCTACCTAGAGGAGCCTGTTTCATAATCGATAACCCCCGCTCAACCCGACCACCCCTCG--CAA-AC-CA-TCAGCCTATATACCGCCGT-CTT-TTCCT-GCTTACCTTTTGAAAGAAATTATAGTAAGCCCAATAG------TT-TA--TAACTAAAAAGTCAGGTCAAGGTGTAGCTTATGGGGCGGAGAAAATGGGCTACATTTTCTACTTAATAGAACA-----C--ACGGAA-AAT--ATTC-TGAAA-TAAAACATTCGAAGGCGGATTTAGCAGTAAGAACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAACGGCCCAATGAGGACTTTCCTGTCTCTTGTAACCAATCAATGAAACTGATCTTCCAGTCCAAAAGCTGG-AATAAATCCACAAGACGAAAAGACCCTGTGGAAC-TTT-AA-GTGCTAATCAATAA---CATGACACAACCACTTTTAGTTGGGGCAACTTTGGAACAAAACAAAACTTCCAA-T-CA-GA--ACAA-GTTT-ACCC-AAATCTAGGC-CCACACACCAAACTT-TGAAT--TC--A-TATTAGACCCAGTAT-TACTGATTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGCCCCAATCGACGAG-GGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCAAACAGTGCAGCAGCTGT Cnemidophorus_ocellifer_2 ACCTGTCCGCCAGAGAATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTCCCAATTCTACCTAGAGGAGCCTGTTTCATAATCGATAACCCCCGCTCAACCCGACCACCCCTCG--CAA-AC-CA-TCAGCCTATATACCGCCGT-CTT-TTCCT-GCTTACCTTTTGAAAGAAATTATAGTAAGCCCAATAG------TT-TA--TAACTAAAAAGTCAGGTCAAGGTGTAGCTTATGGGGCGGAGAAAATGGGCTACATTTTCTACTTAATAGAACA-----C--ACGGAA-AAT--ATTC-TGAAA-TAAAACATTCGAAGGCGGATTTAGCAGTAAGAACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAACGGCCCAATGAGGACTTTCCTGTCTCTTGTAACCAATCAATGAAACTGATCTTCCAGTCCAAAAGCTGG-AATAAATCCACAAGACGAAAAGACCCTGTGGAAC-TTT-AA-GTGCTAATCAATAA---CATGACACAACCACTTTTAGTTGGGGCAACTTTGGAACAAAACAAAACTTCCAA-T-CA-GA--ACAA-GTTT-ACCC-AAATCTAGGC-CCACACACCAAACTT-TGAAT--TC--A-TATTAGACCCAGTAT-TACTGATTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGCCCCAATCGACGAG-GGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCAAACAGTGCAGCAGCTGT Crocodilurus_amazonicus_1 GCATGTCCGCCAGAGAACTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTTCCAACCCTGCCTAGAGGAGCCTGTTCCATAATCGATAATCCCCGATCAACCCGACCACCTATTG---AA-AC-C-GTCAGCCTATATACCGCCGT-C-C-CTTCTCGCTTACCTTTTGAAGGACAC-ACAGTAAGCACAAGAG------TC-TTT-AAACTAACAAATCAGGTCAAGGTGTAGCTTATTAGGTGGAGGAAATGGGCTACATTTTCT-C-CGACAGATCA----TC--ACGAAC-TTC--GCTC-TGAAACCAAAACGAACAAAGGAGGATTTAGCAGTAAGAACGGCCGCGGGATCCTCCACCGTGCAAAGGTAGCATAATCATTTGTCCTCTAAATAAGGACTAGTATGAACGGCCTAATGAAGATTTACCTGTCTCTTATAGCCGATCTGTGAAACTGATCTCCCAGTACAAAAGCTGG-AATTTTTACACAAGACGAAAAGACCCTGTGGAAC-TTTAAA-CTGCA-ACCAAC-AC-GAATGGTTACGCCGATTTTAGTTGGGGCAACTTTGG-AAAAAACATAACTTCCAA-T-CA-AGGAGCAA-CCCAAGCCCACGT-T-AGGC-CAACACGCC--CAACATCCCCT-CC-TA-CA-C-GACCCAGTAT-AACTGATAAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGCCCAAATCGACGAGCGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCAAGCAGTGCAGCAGCTGT Crocodilurus_amazonicus_2 GCATGTCCGCCAGAGAACTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTTCCAACCCTGCCTAGAGGAGCCTGTTCCATAATCGATAATCCCCGATCAACCCGACCACCTATTG---AA-AC-C-GTCAGCCTATATACCGCCGT-C-C-CTTCTCGCTTACCTTTTGAAGGACAC-ACAGTAAGCACAAGAG------TC-TTT-AAACTAACAAATCAGGTCAAGGTGTAGCTTATTAGGTGGAGGAAATGGGCTACATTTTCT-C-CGACAGATCA----TC--ACGAAC-TTC--GCTC-TGAAACCAAAACGAACAAAGGAGGATTTAGCAGTAAGAACGGCCGCGGGATCCTCCACCGTGCAAAGGTAGCATAATCATTTGTCCTCTAAATAAGGACTAGTATGAACGGCCTAATGAAGATTTACCTGTCTCTTATAGCCGATCTGTGAAACTGATCTCCCAGTACAAAAGCTGG-AATTTTTACACAAGACGAAAAGACCCTGTGGAAC-TTTAAA-CTGCA-ACCAAC-AC-GAATGGTTACGCCGATTTTAGTTGGGGCAACTTTGG-AAAAAACATAACTTCCAA-T-CA-AGGAGCAA-CCCAAGCCCACGT-T-AGGC-CAACACGCC--CAACATCCCCT-CC-TA-CA-C-GACCCAGTAT-AACTGATAAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGCCCAAATCGACGAGCGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCAAGCAGTGCAGCAGCTGC Dicrodon_guttulatum ACTTGTCCGCCAGAGAATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTCCCAACCCTGCCTAGAGGAGCCTGTTACATAATCGATAATCCCCGATCAACCCGACCCTTTCTTG--TAA-AC-C-TTCAGCCTATATACCGCCGT-C-T-CTCTTAGCCTACCTTTTGAAAGATATAACAGTAAGCCAAAAAG------TC-CTT-CAACTAAAAAGTCAGGTCAAGGTGTAGCTAATGAAAGGGAGATAATGGGCTACATTTTCTA--CAATAGAACA----TA--ACGAAA-AAC--ACTC-TGAAA-C-AGGTGTATAAAGGCGGATTTAGTAGTAAGAACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAATGGCCAAATGAGGACTTACCTGTCTCTTATAACCAATCTATGAAACTGATCTCTCAGTACAAAAGCTGA-GATAAACACACAAGACGAAAAGACCCTGTGGAACTTAC-AA-GTGTCAACCAACAA---CATGGAACAACCACTTTTAGTTGGGGCAACTTTGGAACAAAACAAAACTTCCAATT-TA-GGCAAACA--TAA-AAAT-TCAAATAGGT-ATACACACCAA-ATC-TGAACAGCC--ATTATC-GACCCAGTAT-TACTGATAAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCCATCGACGAGCGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCAAACAGTGCAGCAGCTGT Dracaena_guianensis_1 ACATGTCCGCCAGAGAATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTTCCAACCCTGCCTAGAGGAGCCTGTTTCATAATCGATAACCCCCGATCAACCTCACCACCTATTG---AA-ACGC--ACAGCCTATATACCGCCGT-C-G-C-CCACGCTTACCCTCTGAAAGATACAATAGTAAGCACAATAG-----TTC-AA--AAACTAATAAGTCAGGTCAAGGTGTAGCTTATTAGGTGGAAGAAATGGGCTACATTTTCTA--CAACAGA-CA----ACTCACGGAC-TCC--GCTC-TGAAACC-AAGCGAATAAAGGAGGATTTAGCAGTAAGAACGGCCGCGGGATCCTCCACCGTGCAAAGGTAGCATAATCATTTGTCTTCTAAATAAAGACTAGTATGAATGGCCTAATGAGGATTTACCTGTCTCTTGTAGCCAATCTATGAAACTAATCTCCCAGTACAAAAGCTGG-GATCACCACACAAGACGAAAAGACCCTGTGGAACTTTTAAA-CTGCA-ACCAAC-AC-CTATGGTCCAGCCGCTTTTAGTTGGGGCAACTTTGGAATAAAACATAACTTCCAA-T-CA-AGGAG--A--GAC-AC-CGCAT-C-AGGC-CAACACGCC-TTAAC-ACCACT-CCATA-CA-C-GACCCAGTAC-AACTGATTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGCCCAAATCGACGAGCGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCCAGCAGTGCAGCAGCTGC Dracaena_guianensis_2 ACATGTCCGCCAGAGAATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTTCCAACCCTGCCTAGAGGAGCCTGTTTCATAATCGATAACCCCCGATCAACCTCACCACCTATTG---AA-ACGC--ACAGCCTATATACCGCCGT-C-G-C-CCACGCTTACCCTCTGAAAGATATAATAGTAAGCACAATAG-----TTC-AA--AAACTAATAAGTCAGGTCAAGGTGTAGCTTATTAGGTGGAAGAAATGGGCTACATTTTCTA--CAACAGA-CA----ACTCACGGAC-TCC--GCTC-TGAAACC-AAGCGAATGAAGGAGGATTTAGCAGTAAGAACGGCCGCGGGATCCTCCACCGTGCAAAGGTAGCATAATCATTTGTCTTCTAAATAAAGACTAGTATGAATGGCCTAATGAGGATTTACCTGTCTCTTGTAGCCAATCTATGAAACTAATCTCCCAGTACAAAAGCTGG-GATCACCACACAAGACGAAAAGACCCTGTGGAACTTTTAAA-CTGCA-ACCAAC-AC-CTATGGTCCAGCCGCTTTTAGTTGGGGCAACTTTGGAATAAAACATAACTTCCAA-T-CA-AGGAG--A--GAC-AC-CGCAT-C-AGGC-CAACACGCC-TTAAC-ACCACT-CCATA-CA-C-GACCCAGTAC-AACTGATTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGCCCAAATCGACGAGCGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCCAGCAGTGCAGCAGCTGC Kentropyx_altamazonica_1 ACTTGTTCGCCAGAATATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACGGTGTCCCAATCCTGCCTAGAGGAGCCTGCTTCATAATCGATAACCCCCGTTCAACCCAACCTTCCCTTG--AAATTTATTTTCAGCCTATATACCGCCGT-C-C-TTTACCGCTTACCTTCTGAAAGAAATACTAGTAAGCCTAATAG------CC-CC--TAGCTAAAAAGTCAGGTCAAGGTGTAGCCTATGGGAAGGAGAAAGTGGGCTACATTTTCTACTT-CTAGAACA-----C--ACGAAA-TAT--ACTC-TGAAATCAAAGTAACTGAAGGCGGATTTAGTAGTAAGAACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAATGGCCTAATGAGGACTTTTCTGTCTCTTGTAACCAATCAATGAAACTGATCTCCCAGTCCAAAAGCTGG-GATAAAACCACAAGACGAAAAGACCCTGTGGAACTTTT-AA-GTGCTAGTCATT-A---TATGATAGAAACACTTTTAGTTGGGGCAACTTTGGAACAAAGTAAAACTTCCAA-T-TA-AAT-TTTA-TTAT-ACCT-TAATCTAGGTATTACACACCGACATT-AAAATA-CT--C-T--T-GACCCAGTAC-TACTGATTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAGTGGGGCTTACGACCTCGATGTTGGATCA-GGCCCCCCAACAGTGCAGCAGCTGT Kentropyx_altamazonica_2 ACTTGTTCGCCAGAATATTACGGGCGAAAGCCTAAAATTCAAAAGACTTGACGGTGTCCCAATCCTGCCTAGAGGAGCCTGCTTCATAATCGATAACCCCCGCTTAACCCAACCTTCCCTTG--AAA-CCATTTTCAGCCTATATACCGCCGT-C-C-TTTACCGCTTACCTTCTGAAAGTCACACTAGTAAGCCTAATAG------CC-AT--TAGCTAGAAAGTCAGGTCAAGGTGTAGCCCATGGGTAGGAGAAAGTGGGCTACATTTTCTACTT-CTAGAACA-----C--ACGAAA-CAT--ACTC-TGAAATCAAAGTAACCGAAGGCGGATTTAGTAGTAAGAACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAATGGCCCAATGAGGACTTTTCTGTCTCTTGTAACCAATCAATGAAACTGATTCCCCAGTCCAAAAGCTGG-GATAAAACCACAAGACGAAAAGACCCTGTGGAACTTTT-AA-GTGCTAATCATT-A---TATGATAAAGACACTTTTAGTTGGGGCAACTTTGGAACAAAGTAAAACTTCCAA-T-TA-AAT-TTTA-TTAC-ACCT-TAATCTAGGCACTACACACCAACATTAAAAATA-CC--C-T--T-GACCCAGTAC-TACTGATTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGATGAGCGGGGCTTACGACCTCGATGTTGGATCA-GGCCCCCCAACAGTGCAGCAGCTGT Teius_teyou AATTGTCCGCCAGAGAATTACGGGCGAAAGCCTAAAACTCAAAAGACTTGACAGTGTCCCAACCCTGCCTAGAGGAGCCTGTTTCATAATCGATAACCCCCGATCAACCTAACCTTCCCTTGCTTAA-ACAC-TTCAGCCTATATACCGCCGTCCAC-TTTTTCGCTTACCTTTTGAAAGAAA-AACAGTAAGCCCAATAG------TC-ACTATAACTAGAAAGTCAGGTCAAGGTGTAGCTTATGAGAAGGTGAAAATGGGCTACATTTTCTA--TATTAGAACA----CT--ACGAAA-AGC--ATCC-TGAAA--AACATGCACAAAGGTGGATTTAGCAGTAAGAACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCATCTAAATAATGACTAGTATGAATGGCCAAATGAAGACTTTCCTGTCTCTTGTAATCAATCAATGAAACTGATCTTTCAGTTCAAAAGCTGA-AATAATAACACAAGACGAAAAGACCCTGTGGAACTTTT-AA-GTGAAAACCAACAAT--TATGGCACAACCACTTTTAGTTGGGGCAACTTTGGAACAAAACAAAACTTCCAA-T-TACAGG-TTCA--ACGAAA-C-AGTTTTAGGT-CTACACACCTTAAAC--CCACA-CCA-C-TATC-GACCCAGTAC-TACTGATAAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCCTAGAGTCCCAATCGACGAGCGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCAAACAGTGCAGCAGCTGT Tupinambis_teguixin AAATGTCCGCCAGAGAATTACGGGTGAAAACCTAAAACTCAAAAGACTTGACGGTGTTCCAACCCTGCCTAGAGGAGCCTGTTCCATAATCGATAATCCCCGATCAACCCGACCACCTATTG---AA-ATAC--TCAGCCTATATACCGCCGT-C---A-CCACGCCTACCCTTTGAAAGACAC-ACAGTAGGCACAATAG-----TTT-CC--AAACTAACAAGTCAGGTCAAGGTGTAGCTTATTGGGTGGAGGAAATGGGCTACATTTTCTA--CGACAGATCA----CCT-ACGGAC-TTC--GCTC-TG-AACC-AAGC-AA-CAAGGAGGATTTAGCAGTAAGAACGGCCGCGGGATCCTCCACCGTGCAAAGGTAGCATAATCATTTGTCCCCTAAATAGGGACTAGTATGAATGGCCCAATGAAGATTTACCTGTCTCTTGTAGCTGATCTATGAAACTGATCTTCCAGTACAAAAGCTGG-AATAATAACACAAGACGAAAAGACCCTGTGGAACTTTTAAA-CCGCA-ACCAAC-ACAC-ATGGCCACGCCGCTTTTAGTTGGGGCAACTTTGGAAAAAAACACAACTTCCAA-T-CA-AGGAGCAATTTAAAACACGCCT-T-AGGC-CGACACGCC--TATT-TTC-CT-CC--C-CA-T-GACCCAGTAC-AACTGATTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGCCCAAATCGACGAGCGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCC-AGCAGTGCAGCAGCTGC ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = 12Sand16S) = N: 1-807; CODONPOSSET CodonPositions (CHARACTERS = 12Sand16S) = N: 1-807; END; BEGIN TREES; TITLE Tb8826; LINK TAXA = Taxa1; TRANSLATE 1 Aspidoscelis_gularis, 2 Cnemidophorus_ocellifer_1, 3 Dicrodon_guttulatum, 4 Cnemidophorus_ocellifer_2, 5 Crocodilurus_amazonicus_2, 6 Crocodilurus_amazonicus_1, 7 Dracaena_guianensis_1, 8 Tupinambis_teguixin, 9 Dracaena_guianensis_2, 10 Kentropyx_altamazonica_1, 11 Teius_teyou, 12 Ameiva_ameiva_1, 13 Kentropyx_altamazonica_2, 14 Ameiva_ameiva_2, 15 Callopistes_maculatus_2, 16 Callopistes_flavipunctatus, 17 Callopistes_maculatus_1, 18 Cercosaura_ocellata; TREE Fig._1A = [&R] (((((((1,(2,4)),(10,13)),(12,14)),3),11),((((5,6),8),(7,9)),((15,17),16))),18); END; BEGIN TREES; TITLE Tb8827; LINK TAXA = Taxa1; TRANSLATE 1 Aspidoscelis_gularis, 2 Cnemidophorus_ocellifer_1, 3 Dicrodon_guttulatum, 4 Cnemidophorus_ocellifer_2, 5 Crocodilurus_amazonicus_2, 6 Crocodilurus_amazonicus_1, 7 Dracaena_guianensis_1, 8 Tupinambis_teguixin, 9 Dracaena_guianensis_2, 10 Kentropyx_altamazonica_1, 11 Teius_teyou, 12 Ameiva_ameiva_1, 13 Kentropyx_altamazonica_2, 14 Ameiva_ameiva_2, 15 Callopistes_maculatus_2, 16 Callopistes_flavipunctatus, 17 Callopistes_maculatus_1, 18 Cercosaura_ocellata; TREE Fig._1B = [&R] (18,(11,(3,(((1,(2,4)),(10,13)),(12,14)))),((8,(6,5),(9,7)),(16,(15,17)))); END;