#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 10, 2024; 13:19 GMT TreeBASE (cc) 1994-2008 Study reference: Costea M., Aiston F., & Stefanovic S. 2008. Species delimitation, phylogenetic relationships and two new species in the Cuscuta gracillima complex (Convolvulaceae). Canadian Journal of Botany, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1996] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=18; TAXLABELS Cuscuta_ariesteguietae Cuscuta_colombiana Cuscuta_deltoidea Cuscuta_gracillima_463 Cuscuta_gracillima_599 Cuscuta_gracillima_600 Cuscuta_gracillima_620 Cuscuta_gracillima_621 Cuscuta_mcvaughii Cuscuta_punana Cuscuta_sidarum_1005 Cuscuta_sidarum_519 Cuscuta_sidarum_751 Cuscuta_vandevenderi_1058 Cuscuta_vandevenderi_1078 Cuscuta_vandevenderi_1079 Cuscuta_vandevenderi_1092 Cuscuta_warneri ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3070] TITLE 'C. gracilima: trnLF, ITS, indels'; LINK TAXA = Taxa1; DIMENSIONS NCHAR=1252; FORMAT DATATYPE=Standard SYMBOLS= "A C G T 0 1 2 3 4 5" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Cuscuta_ariesteguietae GACGCTACGGACTTAATTGGATTGAGCCTTGGTATGGAAACTTAATAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAAT-AAAGAAAAGGGGCAATCCTGAGCCAAATTCTTTTT-TATTTT--------ATAAAAAACTAAGGATAGGTGCAGAGACTCAACGGAAGTTTTTCTAACAAATG-GAAAAAATAGGTTGATAAATATTTTTAAAAACTTATTTGAGAATAAAGAGAGAGTCCTTT---------CAAT---ACAGATACCAATGAAATTTTCAGTAAGAAGAAAATCCGTGGATTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAGGTGTGACAAACTTATATTAAGCTCGCCCCCTTT-TTT--CATTTGGT---------------TTCGAAAAAGGCCTTTCAAATT-ATACTCCCATTTTAGTTTTTTCATTGCCTAAAATTTACATTA-GGAAATGAAGTCGGGATAGCTCAGCCGGTACA{GT}CATAGGACTGAAAATCCTCGTGTCACCAA1010?1010011001?1010000101---GTACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAATCTCGTGGAGCAGCGCGACTTGAGAACATGTCCAATTCCAAAACAAAGAGTGCCGGGT-CCATCCTATGGGTCCAGCCTCTGCGAACAAAAACTCCGGC-GCAGCAGCGCCAAGGAATTT---GTGATGAGAGCGTCGGCTTGCAAAGCTCGCCCTTAGAGCTTGCGCGGG---TTGCGTCT-ACG-TAAGAAAATGACTCTCGTCAATGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAACCATCGAATCTTTGAACGCAAGTTGCGCCTGAAGCCCATAAGGTTGAGGGCACGTTTGCTTGGGTGTCACGCATCGTGTCGCTCCCCCCCGCGCTTTGGGGTTGGAGCGGAGAATGGCCTCCCGGGCCCAACCTCGGGCGTGGTTGGCCGAAAATCTTGTCCATGATGATGTT-GATGTCTTGGCGTGTGGTGGG-TGTACCAATTG-GTATATGGCCACGTCTTGCACGGCCCGATTGT--CGGCA-TGGCCCTTTGGAGTAGACGGAGTTTGCTCTTTGATTGCGACCCCAA-------------------------------000010010?1000010101000001110011 Cuscuta_colombiana GACGCTACGGACTTAATTGGATTGAGCCTTGGTATGGAAACTTAATAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAAT-AAAGAAAAGGGGCAATCCTGAGCCAAATTCTTTTT-TATTTT--------ATAAAAAACTAAGGATAGGTGCAGAGACTCAACGGAAGTTTTTCTAACAAATG-GAAAAAATAGGTTGATAAATATTTTTAAAAACTTATTTGAGAATAAAGAGAGAGTCCTTT---------CAAT---ACAGATACCAATGAAATTTTCAGTAAGAAGAAAATCCGTGGATTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAGGTGTGACAAACTTATATTAAGCTCGCCCCCTTT-TTT--CATTTGGT---------------TTCGAAAAAGGCCTTTCAAATT-ATACTCCCATTTTAGTTTTTTCATTGCCTAAAATTTACATTA-GGAAATGAAGTCGGGATAGCTCAGCCGGTACA{GT}CATAGGACTGAAAATCCTCGTGTCACCAA1010?1010011001?1010000101------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Cuscuta_deltoidea GACGCTACGGACTTAATTGGATTGAGCCTTGGTATGGAAACTTATTAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAAT-AAAGAAAAGGGGCAATCCTG?GCCAAATCCTTTTTATATTTTATTATTTTATAAAAAACTAAGGATAGGTGCAGAGACTCAACGGAAGCTTTTCTAACAAAT---AAAAAAAAGGTTGATAAATATTTTTACAAAGTTATTTGAGAATAAAGAGAGAGTCCTTTTCTACATATCAAT---ACAGATACCAATGAAATTTTCAGTAAGAAGAAAATCCGTGGATTTGAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAGGTGTGACAAACTGCTATTACGCTCGCCCCCTTT-TTT--CATTTTGTTAGGAATTCTTCAAATTCGAAAAAGGCCTTTC---------GTCCCCTTTTAGTTTTTTCATTGCCTAAAATTTACATTA-GGAAATGAAGTCGGGATAGCTCAGCCGGTAGAGCAGAGGACTGAAAATCCTCGTGTCACCA-1000001?0001001?1000010?01TCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAATCTCGTGGAGCAGTGCGACTTGAGAACATGTGCAAATCCAAAGCCAAGAGTGCTGGGT-CCATCCTATGGGTCTGGCCTCGTCGAACAAAAA-ATCGGC-GCAGCAGCGCCAAGGAATTT--AGTAAAGAGAATGCTAGCTTGTGAAGCTCGCTTTGAGAGCTTGCGCGGG---TTGCGTCTTTAG-TAAGAAAATGACTCTCGTCAATGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAATCTTTGAACGCAAGTTGCGCCTAAAGCCCATAAGGTTGAGGGCACGTTTGCTTGGGTGTCACGCA-CGTGTCGCTCCC-CTCGTGTTTTGGGGTTGGAGCGGATCATGGCCTCCCGGGCCCAACCTTGGGTGTGGTTGGCCGAAAATCTTGTCCATGATGATGTTCGATGTCTTGGCGTGTGGTGGG-TGTACGTAGTGTGCAAAAAGCCACGCCTTGCGCAACTGGATTGT--CGGCT-TGACCCTTTGGAGCAGATGGACTTTGCTCTTTGACTGCGACCCCAA-------------------------------00001011010000010001110000100011 Cuscuta_gracillima_463 ------------TTAATTGGATTGAGCCTTGGTATGGAAACTTACTAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAAT-AAAGAAAAGGGGCAATCCTGAGCCAAATCCCTTTT-TATTTTATAAAATTATAAAAAACTAAGGATAGGTGCAGAGACTCAACGGAAGCTTTTCTAACAAATG-GAAAAAATAGGTTGATAAATATTTTTAAAAACTTATTTGAGAATAAAGAGAGAGTCCTTTTCTACATATCAAT---ACAGATACCAATGAAATTTTCAGTAAGAAGAAAATCCGTGGATTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAGGTGTGACAAACTGATATTATGCTCGCCCCCTTT-TTT--CATTTGGTTAGGAATTG--------------------TTCAAATT-ATACTCCCCTTTTAGTTTTTTCATTGCCTAAAATTTACATTA-GGAAATGAAGTCGGGATAGCTCAGCCGGTAGAGCAGAGGACTGAAAATC-------------101000010001001?1000100101------------------------------GGAAGGATCATTGTCGAAATCTCGTGGAGCAGCGTGACTTGAGAACATGTCCAAATCCAATACCAAGGGCGCCGGGT-CCATCATATGGGTCCAGCCTCTGCGAACAAAAACACCGGC-GCAGCAGCGCCAAGGAATTT---GTAATGAGAACGCTGGCTTGCAAAGCTCGCCCTTAGAGCTTGCGCGGG---TTGCGTCT-ACG-TAAGGAAATGACTCTCGGCAATGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAATCTTTGAACGCAAGTTGCGCCTGAAGCCCATAAGGTTGAGGGCACGTTTGCTTGGGTGTCACGCATCGTGTCGCTCCC-CTCGCGCTTTGGGGTTGGAGCGGATAATGGCCTCCCGGGCCCACCATCGGGCGTGGTTGGCCGAAAATCTTGTCCATGATGATGTTCGATGTCTTGGCGTGTGGTGGG-TGTACCAATTG-GTATATAGCCTCGTCTTGCACGGCCCGATTGT--CGGCT-TGGCCCTTTGGAGTAGACGGAGTTTGCTCTTTGATTGCGAACCCAGGTCAAGCGGGACTACCCGCTGAGTTTAAGCA000010010?1000010101010000110011 Cuscuta_gracillima_599 -----TACGGACTTAATTGGATTGAGCCTTGGTATGGAAACTTACTAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAAT-AAAGAAAAGGGGCAATCCTGAGCCAAATCCCTTTT-TATTTTATAAAATTATAAAAAACTAAGGATAGGTGCAGAGACTCAACGGAAGCTTTTCTAACAAATG-GAAAAAATAGGTTGATAAATATTTTTAAAAACTTATTTGAGAATAAAGAGAGAGTCCTTTTCTACATATCAAT---ACAGATACCAATGAAATTTTCAGTAAGAAGAAAATCCGTGGATTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAGGTGTGACAAACTGATATTATGCTCGCCCCCTTT-TTT--CATTTGGTTAGGAATTG--------------------TTCAAATT-ATACTCCCCTTTTAGTTTTTTCATTGCCTAAAATTTACATTA-GGAAATGAAGTCGGGATAGCTCAGCCGGTAGAGCAGAGGACTGAAAATCCTCGTGTCACCAA101000010001001?1000100101--GTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGAATCATTGTCGAAATCTCGTGGAGCAGCGTGACTTGAGAACATGTCCAAATCCAATACCAAGGGCGCCGGGT-CCATCATATGGGTCCAGCCCCTGCGAACAAAAACACCGGC-GCAGCAGCGCCAAGGAATTT---GCAATGAGAACGCTGGCTTGCAAAGCTCGCCCTTAGAGCTTGCGCGGG---TTGCGTCT-ACG-TAAGAAAATGACTCTCGGCAATGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAATCTTTGAACGCAAGTTGCGCCTGAAGCCCATAAGGTTGAGGGCACGTTTGCTTGGGTGTCACGCATCGTGTCTCTCCC-CTCGCGCTTTGGGGTTGGAGCGGATAATGGCCTCCCGGGCCCAACGTCGGGCGTGGTTGGCCGAAAATCTTGTCCATGATGATGTTCGATGTCTTGGCGTGTGGTGGG-TGTACCAATTG-GTATATAGTCTCGTCTTGCACGGCCCGATTGT--CGGCT-TGGCCCTTTGGAGTAGACGGAGTTTGCTCTTTGATTGCGACCCCAAGTCAAGCGGGACTACCCGCTGAGTTTAAGCA000010010?1000010101010000110011 Cuscuta_gracillima_600 -----TACGGACTTAATTGGATTGAGCCTTGGTATGGAAACTTACTAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAAT-AAAGAAAAGGGGCAATCCTGAGCCAAATCCCTTTT-TATTTTATAAAATTATAAAAAACTAAGGATAGGTGCAGAGACTCAACGGAAGCTTTTCTAACAAATG-GAAAAAATAGGTTGATAAATATTTTTAAAAACTTATTTGAGAATAAAGAGAGAGTCCTTTTCTACATATCAAT---ACAGATACCAATGAAATTTTCAGTAAGAAGAAAATCCGTGGATTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAGGTGTGACAAACTGATATTATGCTCGCCCCCTTT-TTT--CATTTGGTTAGGAATTG--------------------TTCAAATT-ATACTCCCCTTTTAGTTTTTTCATTGCCTAAAATTTACATTA-GGAAATGAAGTCGGGATAGCTCAGCCGGTAGAGCAGAGGACTGAAAATCCTCGTGTCACCAA101000010001001?1000100101--------------------------------AAGGATCATTGTCGAAATCTCGTGGAGCAGCGTGACTTGAGAACATGTCCAAATCCAATACCAAGGGCGCCGGGT-CCATCATATGGGTCCAGCCTCTGCGAACAAAAACACCGGC-GCAGCAGCGCCAAGGAATTT---GTAATGAGAACGCTGGCTTGCAAAGCTCGCCCTTAGAGCTTGCGCGGG---TTGCGTCT-ACG-TAAGAAAATGACTCTCGGCAATGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAATCTTTGAACGCAAGTTGCGCCCGAAGCCCATAAGGTTGAGGGCACGTTTGCTTGGGTGTCACGCATCGTGTCGCTCCC-CTCGCGCTTTGGGGTTGGAGCGGATAATGGCCTCCCGGGCCCAACATCGGGCGTGGTTGGCCGAAAATCTTGTCCATGATGATGTTCGATGTCTTGGCGTGTGGTGGG-TGTACCAATTG-GTATATAGCCTCGTCTTGCACGGCCCGATTGT--CGGCT-TGGCCCTTTGGAGTAGACGGAGTTTGCTCTTTGATTGCGACCCCAA-------------------------------000010010?1000010101010000110011 Cuscuta_gracillima_620 GACGCTACGGACTTAATTGGATTGAGCCTTGGTATGGAAACTTACTAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAAT-AAAGAAAAGGGGCAATCCTGAGCCAAATCCCTTTT-TATTTTATAAAATTATAAAAAACTAAGGATAGGTGCAGAGACTCAACGGAAGCTTTTCTAACAAATG-GAAAAAATAGGTTGATAAATATTTTTAAAAACTTATTTGAGAATAAAGAGAGAGTCCTTTTCTACATATCAAT---ACAGATACCAATGAAATTTTCAGTAAGAAGAAAATCCGTGGATTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAGGTGTGACAAACTGATATTATGCTCGCCCCCTTT-TTT--CATTTGGTTAGGAATTG--------------------TTCAAATT-ATACTCCCCTTTTAGTTTTTTCATTGCCTAAAATTTACATTA-GGAAATGAAGTCGGGATAGCTCAGCCGGTAGAGCAGAGGACTGAAAATCCTCGTGTCACCAA101000010001001?1000100101TCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAATCTCGTGGAGCAGCGTGACTTGAGAACATGTCCAAATCCAATACCAAGGGCGCCGGGT-CCATCATATGGGTCCAGCCTCTGCGAACAAAAACACCGGC-GCAGCAGCGCCAAGGAATTT---GTAATGAGAACGCTGGCTTGCAAAGCTCGCCCTTAGAGCTTGCGCGGG---TTGCGTCT-ACG-TAAGAAAATGACTCTCGGCAATGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAATCTTTGAACGCAAGTTGCGCCTGAAGCCCATAAGGTTGAGGGCACGTTTGCTTGGGTGTCACGCATCGTGTCGCTCCC-CTCGCGCTTTGGGGTTGGAGCGGATAATGGCCTCCCGGGCCCAACGTCGGGCGTGGTTGGCCGAAAATCTTGTCCATGATGATGTTCGATGTCTTGGCGTGTGGTGGG-TGTACCAATTG-GTATATAGCCTCGTCTTGCACGGCCCGATTGT--CGGCT-TGGCCCTTTGGAGTAGACGGAGTTTGCTCTTTGATTGCGACCCCAAGTCAAGCGGGACTACCCGCTGAGTTTAAGCA000010010?1000010101010000110011 Cuscuta_gracillima_621 ---GCTACGGACTTAATTGGATTGAGCCTTGGTATGGAAACTTACTAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAAG-AAAGAAAAGGGGCAATCCTGAGCCAAATCCCTTTT-TATTTCATAAAATTATAAAAAACTAAGGATAGGTGCAGAGACTCAACGGAAGCTTTTCTAACAAATG-GAAAAAATAGGTTGATAAATATTTTTAAAAACTTATTTGAGAATAAAGAGAGAGTCCTTTTCCACATATCAAT---ACAGATACCAATGAAATTTTCAGTAAGAAGAAAATCCGTGGATTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAGGTGTGACAAACTGATATTATGCTGGCCCCCTTT-TTT--CATTTGGTTAGGAATTG--------------------TTCAAATT-ATACTCCCCTTTTAGTTTTTTCATTGCCTAAAATTTACATTA-GGAAATGAAGTCGGGATAGCTCAGCCGGTAGAGCAGAGGACTGAAAATCCTCGTGTCAC---101000010001001?1000100101--------------------GTGAACCTGCGGAAGGATCATTGTCGAAATCTCGTGGAGCAGCGTGACTTGAGAACATGTCCAAATCCAATACCAAGGGCGCCGGGT-CCATCATATGGGTCCAGCCTCTGCGAACAAAAACACCGGC-GCAGCAGCGCCAAGGAATTT---GTAATGAGAACGCTGGCTTGCAAAGCTCGCCCTTAGAGCTTGCGCGGG---TTGCGTCT-ACG-TAAGAAAATGACTCTCGGCAATGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAATCTTTGAACGCAAGTTGCGCCTGAAGCCCATAAGGTTGAGGGCACGTTTGCTTGGGTGTCACGCATCGTGTCGCTCCC-CTCGCGCTTTGGGGTTGGAGCGGATAATGGCCTCCCGGGCCCAACATCGGGCGTGGTTGGCCGAAAATCTTGTCCATGATGATGTTCGATGTCTTGGCGTGTGGTGGG-TGTACCAATTG-GTATATAGCCTCGTCTTGCACGGCCCGATTGT--CGGCT-TGGCCCTTTGGAGTAGACGGAGTTTGCTCTTTGATTGCGACCCCAAGTCAAGCGGGACTACCCGCTGAGTTTAAGCA000010010?1000010101010000110011 Cuscuta_mcvaughii -------------------GATTGAGCCTTGGTATGGAAACTTACTAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAAT-AAATAAAAGGGGCAATCCTGAGCCAACTCC-TTGATTAT-----------------------GGATAGGTGCAGAGACTCAATGGAAGCTTTTCTAACAAATGCACAAAAATAGTTTGATAAATATTTTTACAAACTTAATTGAGAATAAAGAGAGAGTCCTTTTCTACATGTCAATACAACATATCTAAATGAAATTGTCAGTAAGAAGAAAATCCGTGGATTGGAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAGATAGAAAAAACTGCTATTAAGCTCACCGCCTTTATTT-GCATTTGCTTAG-------------------AAGGACTTTT-------------------AGGTTTTTCATTTCCTAAAATTTTCATTA-GGAAATGAAGTTGGGATAGCTCAGCCGGTAGAGCAGAGGACTGAAAATCCTCGTGTCAC-----------------------------------------------------------GGAAGGATCATTGTCGAAACCT-GCAGAGCAGAATGACTTGAGGACTTGTGAAAATGCGTAAGT-GCGGGGTTGGAT-TTATATCTTGGGTCCAACCTCGACGAACAAAAACACCGGC-GCAGCAGCGCCAAGGAATTC--CGGAAAGAGAATGCCAGCTTGCAA-G-TGTCTTTG-GTGCTTGTGGGGGCGGCATCATCTGAAGCAAAAATAATGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAATCTTTGAACGCAAGTTGCGCCCGAAGCCAATTAGGTTGAGGGCACGTTTGTTTGGGCGTCACGCGTCGTGTCGCTCCT-CCTGTGTTTTGGGAAGGGAGCGGATCGTGGCCTCCCGGGCCTTTCCTCGGGCGTGGTTGGCCGGAACTCTTGCCCC-GACGATGTTCAATGTCTTGGCGTGTGGTGGG-TGTACCAAGTGTGCATGAAAGCACGCCTAGTGCGG-TCGAATGTGGCGTTAGGACCCCTTTGGAGCCGGCGGAGTCGGCTCTCTGATTGCGACCCCAAGTCAGGCGGGACTACCCGCTGA----------------------------------------- Cuscuta_punana GACGCTACGGACTTAATTGGATTGAGCCTTGGTATGGAAACTTACTAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAAT-AAAGAAAAGGGGCAATCCTGAGCCAAATCCTTTTT-TATTTT--------ATAAAAAACTAAGGATAGGTGCAGAGACTCAACGGAAGCTTTTCTAACAAATG-GAAAAAATAGGTTGATAAATATTTTTAAAAACTTATTTGAGAATAAAGAGAGAGTCCTTTTCTACATATCAAT---ACCGATACCAATGAAATTTTCAGTAAGAAGAAAATCCGTGGATTTTCAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAGGTGTGACAAACTAATATTATGCTCGCCCGCTTT-TTT--CATTTGGTTAAGAATTT--------------------TTCAAATTTATACTCCCCTTTTCGTTTTTTCATTGCCTAAAATTTACATTA-GGAAATGAAGTCGGGATAGCTCAGCCGGTAGAGCAGAGGACTGAAAATCCTCGTGTCACCA-1010?1010001001?1000100001-----------------------AACCTGCGGAAGGATCATTGTCGAAATCCTGTTAAGCAGCGCGACCTGAGAACATGTCCAAATCCAAAACCAAGAGTGCCGGGT-CCATCATATGGGTCCAGCCTCTGCGAACAAAAACACCGGC-GCAGCAGCGCCAAGGAATTT--TGTAATGAGAATGCCGTCTTGCGAAGCTCTCTTTTAGAGCTTGTGCGGG---CTGCGTCT-AAG-TAAGAAAATGACTCTCGTCAATGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAATCTTTGAACGCAAGTTGCGCCTGAAGCCCATAAGGTTGAGGGCACGTTTGCTTGGGTGTCACGCATCGTGTCGCTCCC-CTCGTGCTTTGGGGTTGGAGCGGATCATGGCCTCCCGGGCCCAACCTCGGGCGTGGTTGGCCGAAAATCTTGTCCACGATGCTGTTTGATGTCTTGGCGTGTGGTGGG-TGTACCAATCG-GTATATAGCCACGTCTTGCACGGCCCGATCGT--CGGCT-TGACCCTTTGGAGCAGGCGGAGTTTGCTCTTTGATTGCGACCCCAAGTCAAGCGGGACTACCCG-------------00001001010000010101010000110011 Cuscuta_sidarum_1005 -------------------GATTGAGCCTTGGTATGGAAACTTACTAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAAT-AAAGAAAAGGGGCAATCCTGAGCCAAATCCCTTTT-TATAAA--------ATAAAAAACTAAGGATAGGTGCAGAGACTCAACGGAAGCTTTTCTAACAAATG-GAAAAAATAGGTTGATAAATATTTTTAAAAACTTATTTGAGAATAAAGAGAGAGTCCTTTTCTACATATCAAT---ACAGATACCAATGAAATTTTCAGTAAGAAGAAAATCCGTGGATTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAGGTGTGACAAACTTATATTAAGCTCGCCCCCTTT-TTT--CATTTGGT---------------TTCGAAAAAGGCCTTTCAAATT-ATACTCCCATTTTAGTTTTTTCATTGCCTAAAATTTACATTA-GGAACTGAAGTCGGGATAGCTCAGCCGGTAGAGCAGAGGACTGAAAATCCTCGTGTCACCA-1010?1010001001?1010000101-----------TTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAATCTCGTGGAGCAGCGCGACTTGAGAACATGTCCAAATCCAAAACAAAGAGTGCCGGGT-CCGTCATATGGGTCCAGCCTCTGCGAACAAAAACACCGGC-GCAGCAGCGCCAAGGAATTT---GTGATGAGAACGTCGGCTTGCAAAGCTCGCCCTTAGAGCTTGCGCGGG---TTGCGTCT-ACG-TAAGAAAATGACTCTCGTCAATGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACATGGTGTGAATTGCAGAATCCCGTGAACCATCGAATCTTTGAACGCAAGTTGCGCCTGAAGCCCATAAGGTTGAGGGCACGTTTGCTTGGGTGTCACGCATCGTGTCGCTCCC-CCTGCGCTTTGGGGTTGGAGCGGAGAATGGCCTCCCGGGCCCAACCTCGGGCGTGGTTGGCCGAAAATCTTGTCCATGATGATGTT-GATGTCTTGGCGTGTGGTGGG-TGTACCAATTG-GTATATGGCCACGTCTTGCACGGCCCGATTGT--CGGCA-TGGCCCTTTGGAGTAGACGG---------------------------------------------------------000010010?1000010101010001110011 Cuscuta_sidarum_519 -----TACGGACTTAATTGGATTGAGCCTTGGTATGGAAACTTACTAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAAT-AAAGAAAAGGGGCAATCCTGAGCCAAATCCTTTTT-TATTTT--------ATAAAAAACTAAGGATAGGTGCAGAGACTCAACGGAAGTTTTTCTAACAAATG-GAAAAAATAGGTTGATAAATATTTTTAAAAACTTATTTGAGAATAAAGAGAGAGTCCTTTTCTACATATCAAT---ACAGATACCAATGAAATTTTCAGTAAGAAGAAAATCCGTGGATTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAGGTGTGACAAACTTATATTAAGCTCGCCCC-TTT-TTT--CATTTGGT---------------TTCGAAAAAGGCCTTTCAAATT-ATACTCCCATTTTAGTTTTTTCATTGCCTCAAATTTACATTA-GGAAATGAAGTCGGGATAGCTCAGCCGGTAGAGCAGAGGACTGAAAATCCTCGTGTCAC---1010?1010001011?1010000101----AACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAATCTCGTGGAGCAGCGCGACTTGAGAACATGTCCAAATCCAAAACAAAGAGTGCCGGGT-CCATCATATGGGTCCAGCCTCTGCGAACAAAAACACCGGC-GCAGCAGCGCCAAGGAATTT---GTGATGAGAACGTCGGCTTGCAAAGCTCGCCCTTAGAGCTTCCGCGGG---TTGCGTCT-ACG-TAAGAAAATGACTCTCGTCAATGGATATCTCGGCTCTTGCATCGATGAAGAACGCAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAATCTTTGAACGCAAGTTGCGCCTGAAGCCCATAAGGTTGAGGGCACGTTTGCTTGGGTGTCACGCATCGTGTCGTTCCC-CCCGCGCTTTGGGGTTGGAGCGGAGAATGGCCTCCCGGGCCCAACCTCGGGCGTGGTTGGCCGAAAATCTTGTCCATGATGATGTT-GATGTCTTGGCGTGTGGTGGG-TGTACCAGGTG-GTATATGGCCACGTCTTGCACGGCCCGATTGT--CGGCA-TGGCCCTTTGGAGTAGACGGAGTTTGCTCTTTGATTGCGACCCCAAGTCAAGCGGGACTACCCGCTGAGTTTAAGCA000010010?1000010101010001110011 Cuscuta_sidarum_751 -------------------GATTGAGCCTTGGTATGGAAACTTACTAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAAT-AAAGAAAAGGGGCAATCCTGAGCCAAATCCTTTTT-TATTTT--------ATAAAAAACTAAGGATAGGTGCAGAGACTCAACGGAAGTTTTTCTAACAAATG-GAAAAAATAGGTTGATAAATATTTTTAAAAACTTATTTGAGAATAAAGAGAGAGTCCTTTTCTACATATCAAT---ACAGATACCAATGAAATTTTCAGTAAGAAGAAAATCCGTGGATTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAGGTGTGACAAACTTATATTAAGCTCGCCCCCTTT-TTT--CATTTGGT---------------TTCGAAAAAGGCCTTTCAAATT-ATACTCCCATTTTAGTTTTTTCATTGCCTCAAATTTACATTA-GGAAATGAAGTCGGGATAGCTCAGCCGGTAGAGCAGAGGACTGAAAATCCTCGTGTCACCA-1010?1010001001?1010000101TCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAATCTCGTGGAGCAGCGCGACTTGAGAACATGTCCAAATCCAAAACAAAGAGTGCCGGGT-CCATCATATGGGTCCAGCCTCTGCGAACAAAAACACCGGC-GCAGCAGCGCCAAGGAATTT---GTGATGAGAACGTCGGCTTGCAAAGCTCGCCCTTAGAGCTTGCGCGGG---TTGCGTCT-ACG-TAAGAAAATGACTCTCGTCAATGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAATCTTTGAACGCAAGTTGCGCCTGAAGCCCATAAGGTTGAGGGCACGTTTGCTTGGGTGTCACGCATCGTGTCGTTCCC-CCCGCGCTTTGGGGTTGGAGCGGAGAATGGCCTCCCGGGCCCAACCTCGGGCGTGGTTGGCCGAAAATCTTGTCCATGATGATGTT-GATGTCTTGGCGTGTGGTGGG-TGTACCAGGTG-GTATATGGCCACGTCTTGCACGGCCCGATTGT--CGGCA-TGGCCCTTTGGAGTAGACGGAGTTTGCTCTTTGATTGCGACCCCAAGTCAAGCGGGACTACCCGCTGAGTTTAAGCA000010010?1000010101010001110011 Cuscuta_vandevenderi_1058 GACGCTACGGACTTAATTGGATTGAGCCTTGGTATGGAAACTTATTAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAAT-AAAGAAAAGGGGCAATCCTGAGCCAAATCCTTTTTATATTTTATTATTTTATAAAAAACTAAGGATAGGTGCAGAGACTCAACGGAAGCTTTTCTAACAAAT---AAAAAAAAGGTTGATAAATATTTTTACAAAGTTATTTGAGAATAAAGAGAGAGTCCTTTTCTACATATCAAT---ACAGATACCAATGAAATTTTCAGTAAGAAGAAAATCCGTGGATTTGAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAGGTGTGACAAACTGCTATTACGCTCGCCCCCTTT-TTT--CATTTTGTTAGGAATTCTTCAAATTCGAAAAAGGCCTTTC---------GTCCCCTTTTAGTTTTTTCATTGCCTAAAATTTACATTA-GGAAATGAAGTCGGGATAGCTCAGCCGGTAGAGCAGAGGACTGAAAATCCTCGTGTCACCAA1000001?0001001?1000010?01TCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAATCTCGTGGAGCAGTGCGACTTGAGAACATGTTCAAATCCAAAGCCAAGAGTGCTGGGT-CCATCTTATGGGTCTGGCCTCGTCGAACAAAAA-ATCGGC-GCAGCAGCGCCAAGGAATTT--AGTAAAGAGAATGCTAGCTTGTGAAGCTCGCTTTGAGAGCTTGCGCGGG---TTGCGTCTTTAG-TAAGAAAATGACTCTCGTCAATGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAATCTTTGAACGCAAGTTGCGCCTAAAGCTCATAAGGTTGAGGGCACGCTTGCTTGGGTGTCACGCATCGTGTCGCTCCC-CTCGTGTTTTGGGGTTGGAGCGGATCATGGCCTCCCGGGCCCAACCTTGGGTGTGGTTGGCCGAAAATCTTGTCCATGATGATGTTCGATGTCTTGGCGTGTGGTGGG-TGTACGTAGTGTGCAAAAAGCCACGACTTGCGCAACTGGATTGT--CGGCT-TGACCCTTTGGAGCAGATGGACTTTGCTCTTTGACTGCGACCC----------------------------------00001011010000010001010000100011 Cuscuta_vandevenderi_1078 -----TACGGACTTAATTGGATTGAGCCTTGGTATGGAAACTTATTAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAAT-AAAGAAAAGGGGCAATCCTGAGCCAAATCCTTTTTATATTTTATTATTTTATAAAAAACTAAGGATAGGTGCAGAGACTCAACGGAAGCTTTTCTAACAAAT---AAAAAAAAGGTTGATAAATATTTTTACAAAGTTATTTGAGAATAAAGAGAGAGTCCTTTTCTACATATCAAT---ACAGATACCAATGAAATTTTCAGTAAGAAGAAAATCCGTGGATTTGAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAGGTGTGACAAACTGGTATTACGCTCGCCCCCTTT-TTT--CATTTTGTTAGGAATTCTTCAAATTCGAAAAAGGCCTTTC---------GTCCCCTTTTAGTTTTTTCATTGCCTAAAATTTACATTA-GGAAATGAAGTCGGGATATCTCAGCCGGTACA?CAGAGGACTGAAAATCCTCGTGTC-----1000001?0001001?1000010?01TCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAATCTCGTGGAGCAGTGCGACTTGAGAACATGTTCAAATCCAAAGCCAAGAGTGCTGGGT-CCATCTTATGGGTCTGGCCTCGTCGAACAAAAA-ATCGGC-GCAGCAGCGCCAAGGAATTT--AGTAAAGAGAATGCTAGCTTGTGAAGCTCGCTTTGAGAGCTTGCGCGGG---TTGCGTCTTTAG-TAAGAAAATGACTCTCGTCAATGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAATCTTTGAACGCAAGTTGCGCCTAAAGCTCATAAGGTTGAGGGCACGCTTGCTTGGGTGTCACGCATCGTGTCGCTCCC-CTCGTGTTTTGGGGTTGGAGCGGATCATGGCCTCCCGGGCCCAACCTTGGGTGTGGTTGGCCGAAAATCTTGTCCATGATGATGTTCGATGTCTTGGCGTGTGGTGGG-TGTACGTAGTGTGCAAAAAGCCACGACTTGCGCAACTGGATTGT--CGGCT-TGACCCTTTGGAGCAGATGGACTTTGCTCTTTGACTGCGACCC----------------------------------00001011010000010001010000100011 Cuscuta_vandevenderi_1079 -----TACGGACTTAATTGGATTGAGCCTTGGTATGGAAACTTATTAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAAT-AAAGAAAAGGGGCAATCCTGAGCCAAATCCTTTTTATATTTTATTATTTTATAAAAAACTAAGGATAGGTGCAGAGACTCAACGGAAGCTTTTCTAACAAAT---AAAAAAAAGGTTGATAAATATTTTTACAAAGTTATTTGAGAATAAAGAGAGAGTCCTTTTCTACATATCAAT---ACAGATACCAATGAAATTTTCAGTAAGAAGAAAATCCGTGGATTTGAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAGGTGTGACAAACTGGTATTACGCTCGCCCCCTTT-TTT--CATTTTGTTAGGAATTCTTCAAATTCGAAAAAGGCCTTTC---------GTCCCCTTTTAGTTTTTTCATTGCCTAAAATTTACATTA-GGAAATGAAGTCGGGATATCTCAGCCGGTACA?CAGAGGACTGAAAATCCTCGTGTC-----1000001?0001001?1000010?01TCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAATCTCGTGGAGCAGTGCGACTTGAGAACATGTTCAAATCCAAAGCCAAGAGTGCTGGGT-CCATCTTATGGGTCTGGCCTCGTCGAACAAAAA-ATCGGC-GCAGCAGCGCCAAGGAATTT--AGTAAAGAGAATGCTAGCTTGTGAAGCTCGCTTTGAGAGCTTGCGCGGG---TTGCGTCTTTAG-TAAGAAAATGACTCTCGTCAATGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAATCTTTGAACGCAAGTTGCGCCTAAAGCTCATAAGGTTGAGGGCACGCTTGCTTGGGTGTCACGCATCGTGTCGCTCCC-CTCGTGTTTTGGGGTTGGAGCGGATCATGGCCTCCCGGGCCCAACCTTGGGTGTGGTTGGCCGAAAATCTTGTCCATGATGATGTTCGATGTCTTGGCGTGTGGTGGG-TGTACGTAGTGTGCAAAAAGCCACGACTTGCGCAACTGGATTGT--CGGCT-TGACCCTTTGGAGCAGATGGACTTTGCTCTTTGACTGCGACCC----------------------------------00001011010000010001010000100011 Cuscuta_vandevenderi_1092 -----TACGGACTTAATTGGATTGAGCCTTGGTATGGAAACTTATTAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAAT-AAAGAAAAGGGGCAATCCTGAGCCAAATCCTTTTTATATTTTATTATTTTATAAAAAACTAAGGATAGGTGCAGAGACTCAACGGAAGCTTTTCTAACAAAT---AAAAAAAAGGTTGATAAATATTTTTACAAAGTTATTTGAGAATAAAGAGAGAGTCCTTTTCTACATATCAAT---ACAGATACCAATGAAATTTTCAGTAAGAAGAAAATCCGTGGATTTGAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAGGTGTGACAAACTGCTATTACGCTCGCCCCCTTT-TTT--CATTTTGTTAGGAATTCTTCAAATTCGAAAAAGGCCTTTC---------GTCCCCTTTTAGTTTTTTCATTGCCTAAAATTTACATTA-GGAAATGAAGTCGGGATAGCTCAGCCGGTAGAGCAGAGGACTGAAAATCCTCGTGTCACCA-1000001?0001001?1000010?01--------AGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAATCTCGTGGAGCAGTGCGACTTGAGAACATGTTCAAATCCAAAGCCAAGAGTGCTGGGT-CCATCTTATGGGTCTGGCCTCGTCGAACAAAAA-ATCGGC-GCAGCAGCGCCAAGGAATTT--AGTAAAGAGAATGCTAGCTTGTGAAGCTCGCTTTTAGAGCTTGCGCGGG---TTGCGTCTTTAG-TAAGAAAATGACTCTCGTCAATGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAATCTTTGAACGCAAGTTGCGCCTAAAGCTCATAAGGTTGAGGGCACGTTTGCTTGGGTGTCACGCATCGTGTCGCTCCC-CTCGTGTTTTGGGGTTGGAGCGGATCATGGCCTCCCTGGCCCAACCTTGGGTGTGGTTGGCCGAAAATCTTGTCCATGATGATGTTCGATGTCTTGGCGTGTGGTGGG-TGTACGTAGTGTGCAAAAAGCCACGACTTGCGCAACTGGATTGT--CGGCT-TGACCCTTTGGAGCAGATGGACTTTGCTCTTTGACTGCGACCCCAAGTCAGGCGGGACTACCCGCTGACTT------00001011010000010001010000100011 Cuscuta_warneri ---------GACTTAATTGGATTGAGCCTTAGTATGGAAACTTACTAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAATTAAAGAAAAGGGGCAATCCTGAGCCAAATCCTTTTTCTATTTT-------TATCACAAACTAAGGATAGGTGCAGAGACTCAAAGGAAGCTTTTCTAACAAATGC-------AAGT------------------CACTAATTTGAGAATAAAGAGAGAGTCCTTTTCTACGTATCAAT---ACAGATAGTAATGAAATTTTCAGTAAGAAGAAAATCCGTGGATTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCA---------CAAAATACTATTCCGCTCACCACCTTTATTTTTCAGTTGG----------TTCAAATAAAAAAAAGCCCTTCT-------------------CAGTTTTAC-TCTCCTATTAGTTACCTAAAGGAAATGAAGTCGGGATAGCTCAGCCGGTACAGCAGAGGACTGAAAATCCTCG--------------------------------------------GGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAACCTTTTCGG--TAGGCTGACTTG--AACTCGTAGATAAACAAAACA-ATAGTGTTGGATCTTGTCGCGAAGATTCAGCCTCAACG---AAAAATACCGGCACTATTAGCGCCAAGGA-TAT--GGAAATGAGCATGTCAGCTTGCAATGTTTTTTTGGAGCACGTGCA-GGA---TG-TGTATTT---AATAGAAATGACTCTTGGCAATGGATATCTTGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAATCTTTGAACGCAAGTTGCGCCGGATGCCAATTTGGTCGACGGCTCGTTTGCTTGGGAGTCAAATGGTGTGTTGTTCCT-CC----TTTTGGCGAGGGACTGGATCATGGCCTCCCAGGCTAAGGTTTTGGCGTGGTTGGCTGAAATTCTTGTCCTTGGAGATCAATGATTTCTTTGTATGTGGTGGTTTGTGCCTAGTGTGCA-AAAGACATGCGCTGAAAGCGTTGATTGTGGAAGTT-AGACCCTCTGGGGATGGCATAGTTTCCTCTTTGATTGGGACCCCAAGTCAAGCGGGACTACCCGCTGAGTT-------------------------------------- ; END; BEGIN TREES; TITLE Tb8898; LINK TAXA = Taxa1; TRANSLATE 1 Cuscuta_warneri, 2 Cuscuta_mcvaughii, 3 Cuscuta_vandevenderi_1092, 4 Cuscuta_vandevenderi_1079, 5 Cuscuta_vandevenderi_1078, 6 Cuscuta_vandevenderi_1058, 7 Cuscuta_deltoidea, 8 Cuscuta_colombiana, 9 Cuscuta_ariesteguietae, 10 Cuscuta_sidarum_751, 11 Cuscuta_sidarum_519, 12 Cuscuta_sidarum_1005, 13 Cuscuta_punana, 14 Cuscuta_gracillima_621, 15 Cuscuta_gracillima_600, 16 Cuscuta_gracillima_599, 17 Cuscuta_gracillima_620, 18 Cuscuta_gracillima_463; TREE Fig._3 = [&R] ((((((18,17,16,15,14),(12,((11,10),(9,8)))),13),(7,((6,(5,4)),3))),2),1); END;