@ARTICLE{TreeBASE2Ref26470,
author = {Luciano Takeshi Kishi and Camila Cesario Fernandes and Wellington Pine Omori and Jo? Carlos Campanharo and Eliana Gertrudes de Macedo Lemos},
title = {Reclassification of the taxonomic status of SEMIA3007 isolated in Mexico B-11A Mex as Rhizobium leguminosarum bv. viceae by bioinformatic tools},
year = {2016},
keywords = {Genome sequencing, Core genome, Comparative analysis, Ortholog genes, Phylogenetic analysis},
doi = {10.1186/s12866-016-0882-5},
url = {http://},
pmid = {},
journal = {BMC Microbiology},
volume = {16},
number = {},
pages = {260},
abstract = {Resume: Evidence based on genomic sequences is extremely important to confirm the phylogenetic relationships within the Rhizobium group. SEMIA3007 was analyzed within the Mesorhizobium groups to define the underlying causes of taxonomic identification. We previously used biochemical tests and phenotypic taxonomic methods to identify bacteria, which can lead to erroneous classification. An improved understanding of bacterial strains such as the Mesorhizobium genus would increase our knowledge of classification and evolution of these species.
Results: In this study, we sequenced the complete genome of SEMIA3007 and compared it with five other Mesorhizobium and two Rhizobium genomes. The genomes of isolated SEMIA3007 showed several orthologs with M. huakuii, M. erdmanii and M. loti. We identified SEMIA3007 as a Mesorhizobium by comparing the 16S rRNA gene and the complete genome.
Conclusion: Our ortholog, 16S rRNA gene and average nucleotide identity values (ANI) analysis all demonstrate SEMIA3007 is not Rhizobium leguminosarum bv. viceae. The results of the phylogenetic analysis clearly show SEMIA3007 is part of the Mesorhizobium group and suggest a reclassification is warranted.}
}
Citation for Study 20064
Citation title:
"Reclassification of the taxonomic status of SEMIA3007 isolated in Mexico B-11A Mex as Rhizobium leguminosarum bv. viceae by bioinformatic tools".
Study name:
"Reclassification of the taxonomic status of SEMIA3007 isolated in Mexico B-11A Mex as Rhizobium leguminosarum bv. viceae by bioinformatic tools".
This study is part of submission 20064
(Status: Published).
Citation
Kishi L.T., Fernandes C.C., Omori W.P., Campanharo J.C., & Lemos E.G. 2016. Reclassification of the taxonomic status of SEMIA3007 isolated in Mexico B-11A Mex as Rhizobium leguminosarum bv. viceae by bioinformatic tools. BMC Microbiology, 16: 260.
Authors
-
Kishi L.T.
-
Fernandes C.C.
-
Omori W.P.
(submitter)
-
Campanharo J.C.
-
Lemos E.G.
Abstract
Resume: Evidence based on genomic sequences is extremely important to confirm the phylogenetic relationships within the Rhizobium group. SEMIA3007 was analyzed within the Mesorhizobium groups to define the underlying causes of taxonomic identification. We previously used biochemical tests and phenotypic taxonomic methods to identify bacteria, which can lead to erroneous classification. An improved understanding of bacterial strains such as the Mesorhizobium genus would increase our knowledge of classification and evolution of these species.
Results: In this study, we sequenced the complete genome of SEMIA3007 and compared it with five other Mesorhizobium and two Rhizobium genomes. The genomes of isolated SEMIA3007 showed several orthologs with M. huakuii, M. erdmanii and M. loti. We identified SEMIA3007 as a Mesorhizobium by comparing the 16S rRNA gene and the complete genome.
Conclusion: Our ortholog, 16S rRNA gene and average nucleotide identity values (ANI) analysis all demonstrate SEMIA3007 is not Rhizobium leguminosarum bv. viceae. The results of the phylogenetic analysis clearly show SEMIA3007 is part of the Mesorhizobium group and suggest a reclassification is warranted.
Keywords
Genome sequencing, Core genome, Comparative analysis, Ortholog genes, Phylogenetic analysis
External links
About this resource
- Canonical resource URI:
http://purl.org/phylo/treebase/phylows/study/TB2:S20064
- Other versions:
Nexus
NeXML
- Show BibTeX reference
@ARTICLE{TreeBASE2Ref26470,
author = {Luciano Takeshi Kishi and Camila Cesario Fernandes and Wellington Pine Omori and Jo? Carlos Campanharo and Eliana Gertrudes de Macedo Lemos},
title = {Reclassification of the taxonomic status of SEMIA3007 isolated in Mexico B-11A Mex as Rhizobium leguminosarum bv. viceae by bioinformatic tools},
year = {2016},
keywords = {Genome sequencing, Core genome, Comparative analysis, Ortholog genes, Phylogenetic analysis},
doi = {10.1186/s12866-016-0882-5},
url = {http://},
pmid = {},
journal = {BMC Microbiology},
volume = {16},
number = {},
pages = {260},
abstract = {Resume: Evidence based on genomic sequences is extremely important to confirm the phylogenetic relationships within the Rhizobium group. SEMIA3007 was analyzed within the Mesorhizobium groups to define the underlying causes of taxonomic identification. We previously used biochemical tests and phenotypic taxonomic methods to identify bacteria, which can lead to erroneous classification. An improved understanding of bacterial strains such as the Mesorhizobium genus would increase our knowledge of classification and evolution of these species.
Results: In this study, we sequenced the complete genome of SEMIA3007 and compared it with five other Mesorhizobium and two Rhizobium genomes. The genomes of isolated SEMIA3007 showed several orthologs with M. huakuii, M. erdmanii and M. loti. We identified SEMIA3007 as a Mesorhizobium by comparing the 16S rRNA gene and the complete genome.
Conclusion: Our ortholog, 16S rRNA gene and average nucleotide identity values (ANI) analysis all demonstrate SEMIA3007 is not Rhizobium leguminosarum bv. viceae. The results of the phylogenetic analysis clearly show SEMIA3007 is part of the Mesorhizobium group and suggest a reclassification is warranted.}
}
- Show RIS reference
TY - JOUR
ID - 26470
AU - Kishi,Luciano Takeshi
AU - Fernandes,Camila Cesario
AU - Omori,Wellington Pine
AU - Campanharo,Jo? Carlos
AU - Lemos,Eliana Gertrudes de Macedo
T1 - Reclassification of the taxonomic status of SEMIA3007 isolated in Mexico B-11A Mex as Rhizobium leguminosarum bv. viceae by bioinformatic tools
PY - 2016
KW - Genome sequencing
KW - Core genome
KW - Comparative analysis
KW - Ortholog genes
KW - Phylogenetic analysis
UR - http://dx.doi.org/10.1186/s12866-016-0882-5
N2 - Resume: Evidence based on genomic sequences is extremely important to confirm the phylogenetic relationships within the Rhizobium group. SEMIA3007 was analyzed within the Mesorhizobium groups to define the underlying causes of taxonomic identification. We previously used biochemical tests and phenotypic taxonomic methods to identify bacteria, which can lead to erroneous classification. An improved understanding of bacterial strains such as the Mesorhizobium genus would increase our knowledge of classification and evolution of these species.
Results: In this study, we sequenced the complete genome of SEMIA3007 and compared it with five other Mesorhizobium and two Rhizobium genomes. The genomes of isolated SEMIA3007 showed several orthologs with M. huakuii, M. erdmanii and M. loti. We identified SEMIA3007 as a Mesorhizobium by comparing the 16S rRNA gene and the complete genome.
Conclusion: Our ortholog, 16S rRNA gene and average nucleotide identity values (ANI) analysis all demonstrate SEMIA3007 is not Rhizobium leguminosarum bv. viceae. The results of the phylogenetic analysis clearly show SEMIA3007 is part of the Mesorhizobium group and suggest a reclassification is warranted.
L3 - 10.1186/s12866-016-0882-5
JF - BMC Microbiology
VL - 16
IS -
ER -