#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 26, 2024; 4:09 GMT TreeBASE (cc) 1994-2008 Study reference: Ekanayaka A.H., Hyde K.D., & Zhao Q. 2016. The genus Cookeina. Mycosphere, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S20159] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=24; TAXLABELS 'Cookeina colensoi C_col118' 'Cookeina colensoi C_col121' Cookeina_cremeirosea_AS142 Cookeina_cremeirosea_AS210 Cookeina_garethjonesii_HK010 Cookeina_garethjonesii_HK09 'Cookeina indica C_ind119' 'Cookeina indica MFLU_16-0610' 'Cookeina insititia C_ins125' 'Cookeina insititia C_ins126' 'Cookeina korfii CUP_SA_1797' 'Cookeina korfii CUP_SA_2454' 'Cookeina sinensis C_sin111' 'Cookeina sinensis C_sin48' 'Cookeina speciosa C_spe31' 'Cookeina speciosa C_spe6035' Cookeina_sulcipes Cookeina_sulcipes_2 'Cookeina sulcipes MFLU_15-2358' Cookeina_tricholoma_HK012 'Cookeina tricholoma MFLU_15-2359' 'Cookeina venezuelae C_ven42' 'Cookeina venezuelae C_ven43' Microstoma_floccosum_Micro45 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M38944] TITLE Cookeina_MP; LINK TAXA = Taxa1; DIMENSIONS NCHAR=719; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] 'Cookeina colensoi C_col118' -------------------------CCGTAGGTGAACCTGCGGAA-GGATCATTAA-CAAGCGC-------------------------TCCGGCGCTCGGGCTCC--GGCCCCA-----CTTTTTCCACACACCTCCGTGTA-----TATGACCCAGTGTTGCTTC-CCGCCGCGCCTG---CCGGCCGGCGGGGAGATCCA-CCCAAACTCCA---CTTTG----TACTGTCTGTCA--------GTCTGAGC-GGCTCAGTCCGCG-----AATCAAAAACAAGTTAAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATT-CCGGAGGGCATGCCTGTCCGAGCGTCGTGAAC-ATCCTCCCC---CAGCGGCTT-TGCTGCCGTCT-TTGGGGGGTCATGGC-GGTGGA------GTGGCCTTGCGGCCGTCTCCTCGCCCAAAGGCATCTGGCGGAGAGCCTGTGGTTGCCGTGGACGTAGTGAAA----AACCTCTCGACCGCTTGGCGCC-CCCAGTTATCCTGCCGCGAACAT---AGTTTT-TCAACGATATGGACCTCGGATCAGGTAGGGATACCCG----------------------------------- 'Cookeina colensoi C_col121' ------------------------TCCGTAGGTGAACCTGCGGAA-GGATCATTAA-CAAGCGC-------------------------TCCGGCGCTCGGGCTCC--GGCCCCA-----CCTTTTCCACACACCTCCGTGTA-----TATAACCCAGTGTTGCTTC-CCGCCGCGCCTG---CCGGCCGGCGGGGAGATCCA-CGCAAACTCCA---CTTTA----TACTGTCTGTCA--------GTCTGAGC-GGCTCAGTCCGCG-----AACCAAAAACAAGTTAAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATT-CCGGAGGGCATGCCTGTCCGAGCGTCGTGAAC-ATCCTCCCC---CAGCGGCTT-TGCTGCCGTCT-TTGGGGGGTCATGGC-GGTGGA------GTGGCCTCGCGGCCGTCTCCTCGCCCAAAGGCATCTGGCGGAGAGCCTGTGGTTGCCGTGGACGTAGTGAAA----AACCTTTCGTCCGCCTGGCGCG-CCCAGTTATCCTGCCGCGAACGT---AGTTTT-TCAACGATATGGACCTCGGATCAGGTAGGGATACCC------------------------------------ Cookeina_cremeirosea_AS142 -----------------------TTCCGTAGGTGAACCTGCGGAA-GGATCATTAA-AAGGCGCCCTCGTGCGCTCGGGCTTCGGTCCGTCGTGCGCTCGGGCTTC--GG-TCCG-TTTATTTTTTTCAAACACCTCTGTGTAC----CTTTACCTTGTGTTGCTTC-CCGCCGCGCTTC-----GGCCGGCGGGAAGGCCTACCTTAAAACTCT---TTTTG---TTTATGTCAGTCA--------GTCTGAGCGGCATCAGTCCGCA-----AATCAAA---CAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATT-CCGGAGGGCATGCCTGTCCGAGCGTCGAGAAG-CCCCTCTCCT--CAGCGGTTT-TGC-GCCGTCT--GGGGGGGTCATGGT-GGAGGA---------------GCGTTTGCTTCCCGCTTAAAGACATCTGGCGGAGAGTCCGTGGACGCCGTGGACGTAGTGAGA----TA-TTCTCGTCCGGTTGGTGCT-CCCGGTTATCTAGCCGTTGAAGCTTTGCATTT-TTATCT--ATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATA-TCAATAAGCGGAGGAA--- Cookeina_cremeirosea_AS210 ------------------------TCCGTAGGTGAACCTGCGGAAGGGATCATTAA-AAGGCGCCC-----------------------TCGTGCGCTCGGGCTTC--GG-TCCG-TTTATTTTTTTCAAACACCTCTGTGTAC----CTTTACTTTGTGTTGCTTC-CCGCCGCGCTTC-----GGCCGGCGGGAAGGCCTACCTTAAAACTCT---TTTTG---TTTATGTCAGTCA--------GTCTGAGCGGCATCAGTCCGCA-----AATCAAA---CAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATT-CCGGAGGGCATGCCTGTCCGAGCGTCGAGAAG-CCCCTCTCCT--CAGCGGTTT-TGC-GCCGTCT--GGGGGGGTCATGGT-GGAGGA---------------GCGTTTGCTTCCCGCTTAAAGACATCTGGCGGAGAGTCCGTGGACGCCGTGGACGTAGTGAGA----TA-TTCTCGTCCGGTTGGTGCT-CCCGGTTATCTAGCCGTTGAAGCTTTGCATTT-TTATCT--ATTGACCTCGGATCAGGTAGGGATACT------------------------------------- Cookeina_garethjonesii_HK010 --------------------------------------TACTCGG-AGGACATTAA-CAGGCGCCCGCGCGGGGAGGTC----------CCGCGG-CCCGGAGAAA--GA-TTCC-CC--CCCTTCCCTCAACCCTCCGTGTACTCTTTTCTACCCGGCGTTGCTTCCCCGCCGTGCCTAGCCGCCGGCGGGGGAGGGCCTCA-TGAAAACTCTT---TTTTATAGTTTCTGTCATTTGTTCAGCGGTGGGCGCC-GGCTCCGGCCGCGTCCGCCGACCAA---ACTGTCAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATT-CCGGGGGGCATGCCTGTCCGAGCGTCGAAAAA-CCCCTCCCC---CGCCGGCTT-TGCGGCCGCGC--CGGGGGGTGTTGGC-GGAGGA--GCGCGCCCGACGGGCGCCGCCTCCCCGCTCAAAGCCATCTGGCGGAAAGTCTGTGGTCGCCGTGGACGTCGTGAACATTCCAATCATCGTCCGACCGGTGCGCCGCGGCGGTCCAGCCGTTGACCTC-TGTTTTTTCTCGCG--ATTGACCTCGGATCGGAGACCGACACCCGCTGAACTTAAGCATA-TCAAAAAGGGGGAAGGAAA Cookeina_garethjonesii_HK09 --------------------------------------ACTGCGG-AGGACATTAA-CAGGCGCCCGCGCGGGGAGGTC----------CCGCGGCCCCGGCCCGG--GC-CTCC-CC--CCCCTTCCCCAACCCTCCGTGTACTCTTTTCTACCCGGCGTTGCTTCCCCGCCGTGCCTAGCCGCCGGCGGGGGAGGGCCTCA-TGAAAACTCTT---TTTTATAGTTTCTGTCATTTGTTCAGCGGTGGGCGCC-GGCTCCGGCCGCGTCCGCCGACCAA---ACTGTCAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATT-CCGGGGGGCATGCCTGTCCGAGCGTCGAAAAA-CCCCTCCCC---CGCCGGCTT-TGCGGCCGCGC--CGGGGGGTGTTGGC-GGAGGA--GCGCGCCCGACGGGCGCCGCCTCCCCGCTCAAAGCCATCTGGCGGAAAGTCTGTGGTCGCCGTGGACGTCGTGAACATTCCAATCATCGTCCGACCGGTGCGCCGCGGCGGTCCAGCCGTTGACCTC-TGTTTTTTCTCGCG---ATGACCTC-GATCAGAGACGGACACCCGCTGAACTTAAGCATA-TCTAAAGGCCGGAGGAAAT 'Cookeina indica C_ind119' ----------------------TTTCCGTAGGTGAACCTGCGGAA-GGATCATTAA-AAGGCCCCT-----------------------TCGTGCGCTCGGGCTTC--GG-CCCG-TT--CTTTTTTCAAACACCTCTGTGTAC----CTTTACTATGTGTTGCTTC-CCGTCGCGCTTC-----GGCCGGCGGGAAGGCCCACCTTAAAACTCT---TTTAA--TTTTTTGTCAGTCA--------GTCTGAGCGGCATCAGTCCGCA-----AATCAAA---CAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATT-CCGGGGGGCATGCCTGTCCGAGCGTCGAGAAA-CCCCTCTCCT--CAGCGGTTT-TGC-GCCGTCT--GGGGGGGTCATGGT-GGAGGA---------------GCGCTTGCTCCCCGCTAAAAGACATCTGGCGGAGAGTCCGTGGACGCCGTGGACGTAGTGAGA----TA-TTCTCGTCCGGTTGGTGCT-CCCGGTTATCCTGCCGTTGAAGCTTGCTA--T-TTATCT--ATTGACCTCGGATCAGGTAGGGATACCC------------------------------------ 'Cookeina indica MFLU_16-0610' AAGGTAAAAAAATGTAACAAGGTTTCCGTAGGTGAACCTGCGGAA-GGATCATTAA-AAGGCGCCT-----------------------TCGTGCGCTCGGGCTTC--GG-TCCG-TT--CTTTTTTCAAACACCTCTGTGTAC----CTTTACTATGTGTTGCTTC-CCGTCGCGCTTC-----GGCCGGCGGGAAGGCCCACCTTAAAACTCT---TTTAA--TTTTTTGTCAGTCA--------GTCTGAGCGGCATCAGTCCGCA-----AATCAAA---CAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATT-CCGGGGGGCATGCCTGTCCGAGCGTCGAGAAA-CCCCTCTCCT--CAGCGGTTT-TGC-GCCGTCT--GGGGGGGTCATGGT-GGAGGA---------------GCGCTTGCTCCCCGCTAAAAGACATCTGGCGGAGAGTCCGTGGACGCCGTGGACGTAGTGAGA----TA-TTCTCGTCCGGTTGGTGCT-CCCGGTTATCCTGCCGTTGAAGCTTGCTA--T-TTATCT--ATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATA-TCATAAGGCCGGAGGAAAC 'Cookeina insititia C_ins125' --------------------GGTTTCCGTAGGTGAACCTGCGGAA-GGATCATTAA-AAGGCGCT------------------------TCCGGCGCTCGGGCTCC--GG-CCCA----TTCTCTTCTAAACACCTCTGCGTAC----TCTTACCTTGTGTTGCTTT-CCGCCACGCTTC-----GGCTGGCGGGAAGGGCCA-CGCAAACTCAA---TTTTA---TTTCTGTCAGTCA--------GTATGGC--GGCTCTGTCCGCG-----AATCAAA---CAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATT-CCGGAGGGCATGCCTGTCCGAGCGTCGAAAAA-CCCCTCGCC---CGGCGGCTT-CGC-GCCGCAC--CGGGCGGTCATGGC-GGAGGA-----AACGGGCCAAGGCTCGTCTCCCCGCCCAAAGATATCTGGCGGAGAGCCCGTGGTCGCCGTGGACGTAGTGAGA----CA-TTCTCGTCCGTTTGGCGTG-CCCGGTTATCCTGCCGCGACGTTT--CAATCT-CGACCT--ATTGACCTCGGATCAGGTAGGGA----------------------------------------- 'Cookeina insititia C_ins126' -------------------------CCGTAGGTGAACCTGCGGAA-GGATCATTAA-AAGGCGCT------------------------TCCGGCGCTCGGGCTCC--GG-CCCA----TTCTCTTCTAAACACCTCTGCGTAC----TCTTACCTTGTGTTGCTTT-CCGCCACGCTTC-----GGCTGGCGGGAAGGGCCA-CGCAAACTCAA---TTTTA---TTTCTGTCAGTCA--------GTATGGC--GGCTCTGTCCGCG-----AATCAAA---CAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATT-CCGGAGGGCATGCCTGTCCGAGCGTCGAAAAA-CCCCTCGCC---CGGCGGCTT-CGC-GCCGCAC--CGGGCGGTCATGGC-GGAGGA-----AACGGGCCAAGGCTCGTCTCCCCGCCCAAAGATATCTGGCGGAGAGCCCGTGGTCGCCGTGGACGTAGTGAGA----CA-TTCTCGTCCGTTTGGCGTG-CCCGGTTATCCTGCCGCGACGTTT--CAATCT-CGACCT--ATTGACCTCGGATCAGGTAGGGATACCC------------------------------------ 'Cookeina korfii CUP_SA_1797' ----------------------CTTCCGTAGGTGAACCTGCGGAA-GGATCATTAACGAGGCGCCC-----------------------CCGCGCGCTCGGGCCCCCGGG-CCCG-TC--ACCTCACCAAACACCCCGGCGTAC----CAATACCTTCCGTTGCTTC-CCGCCGCCCCCCC--GGGGGCGGCGGGGAGGTCCG-CTCAAACCCCT---CTTTG----TG-AATCGTCAGGTCA----GCCGCGCCGGGCGCAGCCCGCGCGGA-ATGAGAA---CAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCCGGCATT-CCGGGGGGCATGCCTGTCCGAGCGTCGAGAAA-CCCCTCCCCCCACCGCGGCGT-TGC-GCCGCGGGCGGGGGGGTCCTGGC-GGAGGA-----GCGGCCGGTCCGGCCGGCTCCCCACCCAAAGCAATCTGGCGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------ 'Cookeina korfii CUP_SA_2454' ----------------------CTTCCGTAGGTGAACCTGCGGAA-GGATCATTAACGAGGCGCCC-----------------------CCGCGCGCTCGGGCCCCCGGG-CCCGTTC--ACCTCACCAAACACCCCCGCGTAC----TACTACCTTCTGTTGCTTC-CCGCCGCTCCC------GGGCGGCGGGGAGGTCCG-CTCAAACCCCT---CTTTG----TG-AACTACCAGCTCA----GCCGCGTCGGGCGCAGCCCGCGCGAA-ATCTAAA---CAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCCGGCATT-CCGGGGGGCATGCCTGTCCGAGCGTCGAGAAA-CCCCTCTCCCCGCCGCGGCGT-TGC-GCCGCGGGCGGGGGGGTCCTGGC-GGAGGA-----GCGGCCGGTCCGGCCGGCTCCCCGCCCAAAGCCATCTGGCGGAGCGCCCGTGGCGGCCCAGGACGTAGTGAGA----TG-CTCCCGTCCGTCGGCCACG-CCCGGCGCCCCCGCCGCGAACATC-CAGACTT-CTCGCC--ATTGACCTCGGATCAGGTAGGGATACCC------------------------------------ 'Cookeina sinensis C_sin111' ---------------------------GTAGGTGAACCTGCGGAA-GGATCATTAACAAGGCGCCC-----------------------CCGTGCGCTCGGGCCTC--GG-CCCG-CC--ACCTCCTCAAACACCTCTGCGTAC----TCTTACCTT-TGTTGCTTC-CCGCCGCGCCCTC--GGGCGGGGCGGGGAGGTCCG-CTCAAACTCCT---TTCTG----TATTGCCAGTAGCTCA----GTCGTGCC-GGCTCAGTCCGCGCAAA-ACCTTAA---CCAGTCAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCCGGCATT-CCGGGGGGCATGCCTGTCCGAGCGTCGAGTAACCCCCTCCCCC--CCGCGGCTT-TGC-GCCGCGG--CGGGGGGTCATGGC-GGAGGA----GGCGGCAGGTCCGCCGGCCTCCCCGCTCAAAGGAATCTGGCGGAGAGCCCGTGGCGGCCGTGGACGTAGTGAGA----CG-CTCTCGTCCGTCGGCCCCG-CCCGGGCCTCCCGCCGCGACACCC-CAGACTT-CTCGCG--ATTGACCTCGGATCAGGTAGGGATACCCGCTG-------------------------------- 'Cookeina sinensis C_sin48' -------------------------------GTGAACCTGCGGAA-GGATCATTAACAAGGCGCCC-----------------------CCGTGCGCTCGGGCCTC--GG-CCCG-CC--ACCTCCTCAAACACCT-TGCGTAC----TCTTACCTT-TGTTGCTTC-CCGCCGCGCCCT---GGGCGGGGCGGGGAGGTCCG-CTCAAACTCCT---TTCTG----TATTGCCAGTAGCTCA----GTCGTGCC-GGCTCAGTCCGCGCAAA-ACCTTAA---CCAGTCAAAACTTTCAACAACGGAT-TTTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCCGGCATT-CCGGGGGGCATGCCTGTCCGAGCGTCGAGTAA-CCCCTCCCCC--CCGCGGCTT-TGC-GCCGCGG--CGGGGGGTCATGGC-GGAGGA----GGCGGCAGGTCCGCCGGCCTCCCCGCTCAAAGGAATCTGGCGGAGAGCCCGTGGCGGCCGTGGACGTAGTGAGA----CG-CTCTCGT-CGTCGGCCCCG-CCCGGGCCT-CCGCCGCCACACCC-CAGACTTACTCGCG--ATTGACCTCGGATCAGGTAGGGATACCCGCTGAA------------------------------ 'Cookeina speciosa C_spe31' ---------------------------GTTGGTGAACCTGCGGAA-GGATCATTAA-CAAGGGCGCGCGCGGGAGGG-C----------CCGCGG-CTCCGGCCCG--GC-CCTC-CC--TCCTCTCCACACCCCTCCGTGTACGCTTTTCTACCCGGCGTTGCTTCCCCGCCGTGCCTTGCCGCCGGCGGGGGAGGACCTCA-TGAAAATTC-----TTTTTTTGTTTCCGTCATCTGTTCAGTCATGGGCGGC-GGCTCCGTCCGCGTCGGCCCGAGAA---ACTGTCAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATT-CCGGGGGGCATGCCTGTCCGAGCGTCGAAAAA-CCCCTCCCC---CGGCGGCTT-TGCGGCCGC-C--CGGGGGGTCTTGGC-GGAGGAGCGGGCGCCCGACGGGCGCCGCCTCCCCGCTCAAAGCCATCTGGCGGAGAGTCTGGGGTCGCCGTGGACGTCGTGAG-----CAATCATCGTCCCGGCGGCGCGCCCCGGTTATCCAGCCGTCGACAG--TGTTTTT-CTTCCG--ATTGACCTCGGATCAGGTAGGGACACCCGCTGAACTTAAGC-TA-TCAATAA------------ 'Cookeina speciosa C_spe6035' --------------------------------------------A-GGATCATTAA-CAG-----CGCGCGGGAGGG-C----------CCGCGG-CTCCGGCCCG--GC-CCTC-CC--TCCTCTCCAAACACCTCCGTGTACGCTTTTCTACCCGGCGTTGCTTCCCCGCCGTGCCTTGCCGCCGGCGGGGGAGGGCCTCA-TGGAAACTCTTTTATTTTTTTGTATCTGTCATCTGCTCAGTCACGGGCGGC-GGCTCCGGCCGTGTCAG-CCGAGAA---ACTGTCAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATT-CCGGGGGGCATGCCTGTCCGAGCGTCGAAAAA-CCCCTCCCC---CGGCGGCTT-CGCGGCCGC-C--CGGGGGGTCTTGGC-GGAGGAGCGCGCGCCCGACGGGCGCCGTCTCCCCGCTCAAAGCCATCTGGCGGAGAGTCTGTGGTCGCCGTGGACGTCGTGAGCATTCCAATCATCGTCCTGGCGGCGCGCCCCGGTTATCCAGCCGTA--------------------------------------------------------------------------------------- Cookeina_sulcipes ------------------------------------------------------------------------------------------------------------GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATTCAGAATTCAGCGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATT-CCGGGGGGCATGCCTGTCCGAGCGTCGAAAAC-CCCCTCCCC---CGCCGGCTT-TGCGGCCGCGC--CGGGGGGTGTTGGCAGGAGGA--GCGTGCCCGTCGGGCGCCGCCTCCCCGCCCAAAGCCATCTGGCGGAAAGTCTGTGGTCGCC?TGGACGTCGTGAACATTCCAATCATCGTCCGGGCGGTGCGCCGCGGCAGTCCAGCCGTTGACCAG-TGTTTTT-CTCGCG--ATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATA-TCAATAG-CCGGGAGGAA- Cookeina_sulcipes_2 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAATATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATT-CCGGGGGGCATGCCTGTCCGAGCGTCGAAAAC-CCCCTCCCC---CGCCGGCTT-TGCGGCCGCGC--CGGGGGGTGTTGGCAGGAGGA--GCGTGCCCGTCGGGCGCCGCCTCCCCGCCCAAAGCCATCTGGCGGAAAGTCTGTGGTCGCC?T?GACGTCTTGAACATTCCAATCATCGTCCGGGCGGTGCGCCGCGGCAGTCCAGCCGTTGACCAG-TGTTTTT-CTCGCG--ATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATA-TCAATAAGCCGGGAGGAA- 'Cookeina sulcipes MFLU_15-2358' GGAAGTAAAAGTCGTAACAAGGTTTCCG{CT}AGGTGAACCTGCGGAA-GGATCATTAA-CAGGCGCCCGCGCGGGGGGGTC----------CCGCGG-CTCCGGCCCG--GC-CCTC-CC--TCCCTCTTCAAACCCTCCGTGTACTCTGTTCTACCCGGCGTTGCTTCCCCGCCGTGCCTAGCCGCCGGCGGGGGAGGGCTTCA-TGAAAACTCTT---TTTTAT-GTTTCTGTCATTTGTTCAGTGGTGGGCGCC-GGCTCCGGCCGCGCCCGCCGACCAA---ACTGTCAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATT-CCGGGGGGCATGCCTGTCCGAGCGTCGAAAAC-CCCCTCCCC---CGCCGGCTT-TGCGGCCGCGC--CGGGGGGTGTTGGC-GGAGGA--GCGTGCCCGTCGGGCGCCGCCTCCCCGCCCAAAGCCATCTGGCGGAAAGTCTGTGGTCGCCGTGGACGTCGTGAACATTCCAATCATCGTCCGGGCGGTGCGCCGCGGCAGTCCAGCCGTTGACCAG-TGTTTTT-CTCGCG--ATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATA-TCAATAA------------ Cookeina_tricholoma_HK012 GAAGGAAAAAAGTGTAACAAGGTTTCCGTAGGTGAACCTGCGGAA-GGATCATTACGAAGGCGCC------------------------TCGCGCGCTCGGGCTTC--GG-CCCG-CC--ACCTTTCCAAACACCTCTGCGTAC-----TTAACTTT-TGTTGCTTC-CCGCCGCGCCTC---GCGGCCGGCGGGGAGGTCCG-CTCAAACTCCT---TTTTG----TATTGGCAGTAGCTCA----GTCGCGCC-GGCTCAGTCCGCGCAAAGATATAAA---CAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCCGGCATT-CCGGGGGGCATGCCTGTCCGAGCGTCGAGAAA-CCCCTCTCCC--CCGCGGTTT-TGC-GCCGCGG--CGGGAGGTCATGGC-GGAGGA-----GCGGCTGGTCTTGCCGCCTCCCCGCTCGAAGGCATCTGGCGGAGAGCCCGTGGCGGCCGTGGACGTAGTGAGA----CA-CTCTCGTCCGTCGGCCCCG-TCCGGCCCTCCCGCCGCGACACCC-CAGACTT-CTCGCG--ATTGACCTCGGATCAGGTAGAACTACCCGCTGAACTTAAGCA-A-TCAAAAGGCGGGAAGAAA- 'Cookeina tricholoma MFLU_15-2359' AAGGTAAAAAAAGGTAACAAGGTTTCCGTAGGTGAACCTGCGGAA-GGATCATTACGAAGGCGCC------------------------TCGCGCGCTCGGGCTTC--GG-CCCG-CC--ACCTTTCCAAACACCTCTGCGTAC-----TTAACTTT-TGTTGCTTC-CCGCCGCGCCTC---GCGGCCGGCGGGGAGGTCCG-CTCAAACTCCT---TTTTG----TATTGGCAGTAGCTCA----GTCGCGCC-GGCTCAGTCCGCGCAAAGATATAAA---CAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCCGGCATT-CCGGGGGGCATGCCTGTCCGAGCGTCGAGAAA-CCCCTCTCCC--CCGCGGTTT-TGC-GCCGCGG--CGGGAGGTCATGGC-GGAGGA-----GCGGCTGGTCTTGCCGCCTCCCCGCTCGAAGGCATCTGGCGGAGAGCCCGTGGCGGCCGTGGACGTAGTGAGA----CA-CTCTCGTCCGTCGGCCCCG-TCCGGCCCTCCCGCCGCGACACCC-CAGACTT-CTCGCG--ATTGACCTCGGATCGGAGGTGGATACCCGCTGAACTTAAGCATA-TCATAAGGCCGGAGGAAAT 'Cookeina venezuelae C_ven42' ---ATAAAAAGTCGTAACAGGGTTTCCGTAGGTGAACCTGCGGAA-GGATCATTAG-CAAGCGC-------------------------CCCGGCGCTCGGGCTCC--GG-CCCA-----TCAATCCCAAACACCCCCGCGTA-----TATGACCCAGTGTTGCTTC-CCGCCGCGCCTG---TCGGCCGGCGGGGAGATCCCCCGCAAACTCCA---TTTTG----TACTGTCTGTCA--------GTGTGAGC-GGCTCAGTCCGCG------ATCGAA---AAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTTCTGCCGGAGGGCATGCCTGTCCGAGCGTCGTGAAC-ACCCTCCCC---CAGCGGCCC-TGC-GCCGTCC-TCGGGGGGTCATGGC-GGTGGAGGGCCGGTCTCCCTGGGACCGCCTCCCCGCCCAAAGGCATCTGGCGGAGAGCCTGTGGTCGCCGTGGACGTAGTGAAA----CACCCCTCGTCCCGTTGGCGCA-CCCAGTTATCCTGCCGCGAACAC---ACCTTT-CCAACG--ATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATTCAATAAGCCGAGGA---- 'Cookeina venezuelae C_ven43' GGAGTAAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAA-GGATCATTAG-CAAGCGC-------------------------CCCGGCGCTCGGGCTCC--GG-CCCA-----TCAATCCCAAACACCCCCGCGTA-----TATGACCCAGTGTTGCTTC-CCGCCGCGCCTG---TCGGCCGGCGGGGAGATCCCCCGCAAACTCCA---TTTTG----TACTGTCTGTCA--------GTGTGAGC-GGCTCAGTCCGCG------ATCGAA---AAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTTCTGCCGGAGGGCATGCCTGTCCGAGCGTCGTGAAC-ACCCTCCCC---CAGCGGCCC-TGC-GCCGTCC-TCGGGGGGTCATGGC-GGTGGAGGGCCGGTCTCCCTGGGACCGCCTCCCCGCCCAAAGGCATCTGGCGGAGAGCCTGTGGTCGCCGTGGACGTAGTGAAA----CACCCCTCGTCCCGTTGGCGCA-CCCAGTTATCCTGCCGCGAACAC---ACCTTT-CCAACG--ATTGACCTCGGATCAGGTAGGGATACGC----AACTTAAGCATA-TCAATAAGCCCGGGA---- Microstoma_floccosum_Micro45 ----------------------TTCCGTTAGGTGAACCTGCGGAA-GGATCATTAAAAACGTGCGG-CATTGAGGCGTCC----------------CTCGGGGCGCCTGTCGCCA-CG--CTGTGATGAAACACCTCCGTGTAC----ACTTACTTC-TGTTGCTTT-CCCGCCCTTCTC---CCGGGCGGGGAGAGCCAACT-TCAAAGCTCGT---TATCA----TATTGT-GGTCA--------GCATGAGC-GGCATTGTCCGCCTT---AAATATA---AAAGTTAAAACTTTCAACAACGGATCT-TTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCCGGTATT-CCGGGGGGCATGCCTGTTCGAGCGTCGTCAAA-CACCCCTTCG--AGGCGTCTTCTGCTGAAGTCG--TCGTCGGTTATGGC-GGAGAA------TGTGCCGTTGTGGCACTCTCCCGCCCAAAGCCATCTGGCGGAGAGCCCTGGTCTGGCGCCGGCGTAGTAGGT----TTCTCGTTAAACACTCGTCGGAGCCAGGTTATCCAGCCGCGTCAAG---AACACT-TTCCAT--GTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATA-TCAATA------------- ; END; BEGIN TREES; TITLE Cookeina_MP; LINK TAXA = Taxa1; TRANSLATE 1 Microstoma_floccosum_Micro45, 2 'Cookeina colensoi C_col118', 3 'Cookeina colensoi C_col121', 4 'Cookeina indica C_ind119', 5 'Cookeina korfii CUP_SA_2454', 6 'Cookeina korfii CUP_SA_1797', 7 'Cookeina sinensis C_sin111', 8 'Cookeina sinensis C_sin48', 9 'Cookeina speciosa C_spe6035', 10 'Cookeina speciosa C_spe31', 11 Cookeina_sulcipes_2, 12 Cookeina_sulcipes, 13 'Cookeina venezuelae C_ven43', 14 'Cookeina venezuelae C_ven42', 15 'Cookeina insititia C_ins126', 16 'Cookeina insititia C_ins125', 17 Cookeina_garethjonesii_HK09, 18 Cookeina_garethjonesii_HK010, 19 'Cookeina tricholoma MFLU_15-2359', 20 Cookeina_tricholoma_HK012, 21 'Cookeina indica MFLU_16-0610', 22 'Cookeina sulcipes MFLU_15-2358', 23 Cookeina_cremeirosea_AS142, 24 Cookeina_cremeirosea_AS210; TREE PAUP_1 = [&R] (1:66.0,((((((2:4.0,3:7.0):19.0,(13:3.0,14:2.0):23.0):24.0,(15:0.0,16:0.0):41.0):23.0,((9:9.0,10:10.0):16.0,(((11:5.0,22:0.0):0.0,12:6.0):12.0,(17:11.0,18:13.0):25.0):21.0):63.0):34.0,(((5:7.0,6:12.0):38.0,(7:0.0,8:2.0):17.0):12.0,(19:9.0,20:7.0):13.0):34.0):28.0,((4:2.0,21:0.0):11.0,(23:1.0,24:1.0):14.0):43.0):62.0); END;