#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 10, 2024; 12:27 GMT TreeBASE (cc) 1994-2008 Study reference: Jaganathan king S., Ooi P.T., Phang L.Y., Allaudin Z.B., Loh W.H., Tee C.Y., How S.P., Yip K., Choo R., & Lim B.K. 2016. Phylogenetic Characterization of genes encoding for viral envelope glycoprotein (ORF5) and nucleocapsid protein (ORF7) of Porcine Reproductive & Respiratory Syndrome Virus found in Malaysia in 2013 and 2014. BMC Veterinary Research, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S20336] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=36; TAXLABELS Porcine_reproductive_and_respiratory_syndrome_virus._02PB1_AY297116 Porcine_reproductive_and_respiratory_syndrome_virus._07QN_FJ394029 Porcine_reproductive_and_respiratory_syndrome_virus._347_T_KS_AB588636 Porcine_reproductive_and_respiratory_syndrome_virus._4034_2_V_2008_FJ972733 Porcine_reproductive_and_respiratory_syndrome_virus._5112HCM_HQ700878 Porcine_reproductive_and_respiratory_syndrome_virus._ATCC_VR_2332_U87392 Porcine_reproductive_and_respiratory_syndrome_virus._BD_R1_JQ860381 Porcine_reproductive_and_respiratory_syndrome_virus._BH58_10_JN626287 Porcine_reproductive_and_respiratory_syndrome_virus._CH_1a_AY032626 Porcine_reproductive_and_respiratory_syndrome_virus._CT_C2_JQ860383 Porcine_reproductive_and_respiratory_syndrome_virus._DC_JF748718_ Porcine_reproductive_and_respiratory_syndrome_virus._DN694_JQ860366 Porcine_reproductive_and_respiratory_syndrome_virus._DT9_JQ860389 Porcine_reproductive_and_respiratory_syndrome_virus._EDRD_1_D45852 Porcine_reproductive_and_respiratory_syndrome_virus._HCMC_3341_HQ540647 'Porcine reproductive and respiratory syndrome virus. HCMC-3867 HQ540654' Porcine_reproductive_and_respiratory_syndrome_virus._HG_RV2_JQ860391 Porcine_reproductive_and_respiratory_syndrome_virus._JNHS_HM016158 Porcine_reproductive_and_respiratory_syndrome_virus._JXA1_EF112445 Porcine_reproductive_and_respiratory_syndrome_virus._JilinTN1_JN157760 'Porcine reproductive and respiratory syndrome virus. MD-001 AF121131' Porcine_reproductive_and_respiratory_syndrome_virus._MLV_RespPRRS_AF159149 Porcine_reproductive_and_respiratory_syndrome_virus._Miyagi08_2_AB546105 Porcine_reproductive_and_respiratory_syndrome_virus._NA_CAM_C008_2008_KF698641 Porcine_reproductive_and_respiratory_syndrome_virus._NA_CAM_C044_2010_KF698642 Porcine_reproductive_and_respiratory_syndrome_virus._NA_CAM_C182_2011_KF698645 Porcine_reproductive_and_respiratory_syndrome_virus._NA_CAM_C204_2012_KF698646 Porcine_reproductive_and_respiratory_syndrome_virus._NA_LAO_L167_2011_KF698648 Porcine_reproductive_and_respiratory_syndrome_virus._NA_LAO_L232_2012_KF698649 Porcine_reproductive_and_respiratory_syndrome_virus._NB_04_FJ536165 Porcine_reproductive_and_respiratory_syndrome_virus._PL97_1_AY585241 Porcine_reproductive_and_respiratory_syndrome_virus._RespPRRS_MLV_AF066183 Porcine_reproductive_and_respiratory_syndrome_virus._Sar01_2013_ORF5 Porcine_reproductive_and_respiratory_syndrome_virus._Sel01_2014_ORF5 Porcine_reproductive_and_respiratory_syndrome_virus._XL2008_EU880436 Porcine_reproductive_and_respiratory_syndrome_virus.YD_JF748717 ; END; BEGIN TAXA; TITLE Taxa2; DIMENSIONS NTAX=27; TAXLABELS Porcine_reproductive_and_respiratory_syndrome_virus._07QN_FJ394029_ Porcine_reproductive_and_respiratory_syndrome_virus._ATCCVR_2332_U87392.3 Porcine_reproductive_and_respiratory_syndrome_virus._BB0907_F44_KM453699 Porcine_reproductive_and_respiratory_syndrome_virus._BB0907_s34_KM453698 Porcine_reproductive_and_respiratory_syndrome_virus._BH58_10_JN626287 Porcine_reproductive_and_respiratory_syndrome_virus._CH_1a_AY032626 Porcine_reproductive_and_respiratory_syndrome_virus._DC_JF748718 Porcine_reproductive_and_respiratory_syndrome_virus._DK_1997_19407B_KC862576 Porcine_reproductive_and_respiratory_syndrome_virus._DK_2004_1_7_PI_KC862578 Porcine_reproductive_and_respiratory_syndrome_virus._DN1107_JQ860406_ Porcine_reproductive_and_respiratory_syndrome_virus._DN444_JQ860392 Porcine_reproductive_and_respiratory_syndrome_virus._DT7_JQ860419 Porcine_reproductive_and_respiratory_syndrome_virus._FJSD_KP998474_ Porcine_reproductive_and_respiratory_syndrome_virus._HCM_CC3_JQ860410 Porcine_reproductive_and_respiratory_syndrome_virus._JN_HS_HM016158 Porcine_reproductive_and_respiratory_syndrome_virus._JXA1_EF112445 Porcine_reproductive_and_respiratory_syndrome_virus._MN1843UTR_FJ629371 Porcine_reproductive_and_respiratory_syndrome_virus._NB_04_FJ536165 Porcine_reproductive_and_respiratory_syndrome_virus._RVRp22_KM386622_ Porcine_reproductive_and_respiratory_syndrome_virus._RespPRRS_MLV_AF066183 Porcine_reproductive_and_respiratory_syndrome_virus._Sar01_2013_ORF7 Porcine_reproductive_and_respiratory_syndrome_virus._Sel01_2014_ORF7 Porcine_reproductive_and_respiratory_syndrome_virus._V7_HA_myc_FJ524376 Porcine_reproductive_and_respiratory_syndrome_virus._XL2008_EU880436 Porcine_reproductive_and_respiratory_syndrome_virus._YD_JF748717 Porcine_reproductive_and_respiratory_syndrome_virus._YN_2011_JX857698 Porcine_reproductive_and_respiratory_syndrome_virus._pMLV_MN184ORF56_FJ629369 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M39422] TITLE Porcine_Reproductive_&_Respiratory_Syndrome_Virus_ORF7; LINK TAXA = Taxa2; DIMENSIONS NCHAR=373; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Porcine_reproductive_and_respiratory_syndrome_virus._07QN_FJ394029_ ATGCCAAATAACAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCTAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACTCGGAGAAGCCCCATTTCCCTCTAGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCGACGCAACATACTGTGCGTCTGATCCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._ATCCVR_2332_U87392.3 ATGCCAAATAACAACGGCAAGCAGCAGAAGAGAAAGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCTCAGCAAAACCAGTCCAGAGGCAAGGGACCGGGAAAGAAAAATAAGAAGAAAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGATGTCAGACATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTTAATCAAGGCGCTGGGACTTGCACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._BB0907_F44_KM453699 ATGCCAAATAATAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTTGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCAACATACTGTGCGTCTGATTCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._BB0907_s34_KM453698 ATGCCAAATAATAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTTGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCAACATACTGTGCGTCTGATTCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._BH58_10_JN626287 ATGCCAAATAATAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTTGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAACGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCAACATACTGTGCGTCTGATTCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._CH_1a_AY032626 ATGCCAAATAACAACGGCAAGCAGCGAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAAGAAGAAAAGCCCGGAGAAGCCCCATTTTCCTCTAGCGACCGAAGATGACGTCAGGCATCACTTCACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTTAACCAGGGCGCCGGAACTTGTACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCGACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._DC_JF748718 ATGCCAAATAACAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTAGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCGACGCAACATACTGTGCGTCTGATCCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._DK_1997_19407B_KC862576 ATGCCAAATAACAACGGCAAGCAGCAGAAGAGAAAGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCTCAGCAAAACCAGTCCAGAGGCAAGGGACCGGGAAAGAAAAATAAGAAGAAAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGATGTCAGACATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTTAATCAAGGCGCTGGGACTTGCACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._DK_2004_1_7_PI_KC862578 ATGCCAAATAACAACGGCAAGCAGCAGAAGAGAAAGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCTCAGCAAAACCAGTCCAGAGGCAAGGGACCGGGAAAGAAAAATAAGAAGAAAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGATGTCAGACATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTTAATCAAGGCGCTGGGACTTGCACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._DN1107_JQ860406_ ATGCCAAATAATAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAATCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTTGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACCGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCAACATACTGTGCGTCTGATTCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._DN444_JQ860392 ATGCCAAATAATAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAATCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTTGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACCGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCAACATACTGTGCGTCTGATTCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._DT7_JQ860419 ATGCCAAATAATAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTTGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCAACATACTGTGCGTCTGATTCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._FJSD_KP998474_ ATGCCAAATAACAACGGCAAGCAGCAGAAGAGAAAGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCTCAGCAAAACCAGTCCAGAGGCAAGGGACCGGGAAAGAAAAATAAGAAGAAAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGATGTCAGACATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTTAATCAAGGCGCTGGGACTTGCACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._HCM_CC3_JQ860410 ATGCCAAATAATAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTTGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCAACATACTGTGCGTCTGATTCGCGCCACAGCATCACCTTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._JN_HS_HM016158 ATGCCAAATAATAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTTGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCAACACACTGTGCGTCTGATTCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._JXA1_EF112445 ATGCCAAATAACAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTAGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCGACGCAACATACTGTGCGTCTGATCCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._MN1843UTR_FJ629371 ATGCCAAATAACAACGGCAAGCAGCAGAAGAGAAAGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCTCAGCAAAACCAGTCCAGAGGCAAGGGACCGGGAAAGAAAAATAAGAAGAAAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGATGTCAGACATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTTAATCAAGGCGCTGGGACTTGCACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._NB_04_FJ536165 ATGCCAAATAACAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAAGAAGAAAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTCAATCAGGGCGCTGGAACTTGTGCTCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCGACGCATCATACTGTGCGTCTGATCCGCGCCACAGCATCACCTTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._RVRp22_KM386622_ ATGCCAAATAACAACGGCAAGCAGCAGAAGAGAAAGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCTCAGCAAAACCAGTCCAGAGGCAAGGGACCGGGAAAGAAAAATAAGAAGAAAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGATGTCAGACATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTTAATCAAGGCGCTGGGACTTGCACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._RespPRRS_MLV_AF066183 ATGCCAAATAACAACGGCAAGCAGCAGAAGAGAAAGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCTCAGCAAAACCAGTCCAGAGGCAAGGGACCGGGAAAGAAAAATAAGAAGAAAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGATGTCAGACATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTTAATCAAGGCGCTGGGACTTGCACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._Sar01_2013_ORF7 ATGCCAAATAA{CT}AACGGCAAGCAGCAGAAGAGAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGCAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTTGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACCGCCTTCAATCAGGGCGCTGGAACTTGTGCACTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCAACACACTGTGCGTCTGATTCGCGCCACAGCATCACCCCAAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._Sel01_2014_ORF7 ATGCCAAATAACAACGGCAAGCAGCAGAAGAGAAAGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCTCAGCAAAACCAGTCCAGAGGCAAGGGACCGGGAAAGAAAAATAAGAAGAAAAAACCCGAGAAGCCCCCATTTTCTCTAGCGACTGAAGATGATGTCAGACATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTTAATCAAGGCGCTGGGACTTGCACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCGGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._V7_HA_myc_FJ524376 ATGCCAAATAACAACGGCAAGCAGCAGAAGAGAAAGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCTCAGCAAAACCAGTCCAGAGGCAAGGGACCGGGAAAGAAAAATAAGAAGAAAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGATGTCAGACATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTTAATCAAGGCGCTGGGACTTGCACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._XL2008_EU880436 ATGCCAAATAACAACGGCAAGCAGCAAAAGAAAAAGAAGGGCAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGCAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTAGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCGACGCAACATACTGTGCGTCTGATCCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._YD_JF748717 ATGCCAAATAACAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTAGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCGACGCAACATACTGTGCGTCTGATCCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._YN_2011_JX857698 ATGCCAAATAACAACGGCAAGCAGCAGAAGAGAAAGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCTCAGCAAAACCAGTCCAGAGGCAAGGGACCGGGAAAGAAAAATAAGAAGAAAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGATGTCAGACATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTTAATCAAGGCGCTGGGACTTGCACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._pMLV_MN184ORF56_FJ629369 ATGCCAAATAACAACGGCAAGCAGCAGAAGAGAAAGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCTCAGCAAAACCAGTCCAGAGGCAAGGGACCGGGAAAGAAAAATAAGAAGAAAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGATGTCAGACATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTTAATCAAGGCGCTGGGACTTGCACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCAGCATGA- ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M39421] TITLE Porcine_Reproductive_&_Respiratory_Syndrome_Virus_ORF5; LINK TAXA = Taxa1; DIMENSIONS NCHAR=604; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Porcine_reproductive_and_respiratory_syndrome_virus._02PB1_AY297116 ATGTTGGGGAAATGCTTGACCGCGGGCTGTTGCTCGCAAT?GCCTTTTTTGTGGTATATCGCCCCGTTCTGTTTTGCTGCGCTCGTCAGCGCCAGCAACGGCAGCAGCTCCCACTTACAGTTGATCTATAACCTGACGATATGTGAGCTGAACGGCACAGAGTGGCTGAATGAAAGTTTTGATTGGGCAGTGGAAACCTTTGTCATTTTTCCCGTGTTGACTCATATAGTCTCCTACGGCGCCCTCACCACCAGTCACTTCCTTGATACAGTCGGTCTGACCACCGTGGCTACCGCCGGGTATTACCATGGGCGGTATGTCTTGAGCAGCATCTACGCCGTATGTGCCTTAGCTGCGCTGATTTGCTTCATCATTAGGTTGGCAAAGAACTGTATGTCCTGGCGCTATTCATGTACCAGATATACCAACTTCATTCTGGACACCAAAGGCAAGCTCTATCGTTGGCGATCGCCTGTCATCATAGAGAAAGGGGGCAAAGTTGAGGTTGAAGGACACCTAATTGACCTCAAGAGAGTTGTGCTCGATGGTTCCGCGGCTACCCCTGTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCCCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._07QN_FJ394029 ATGTTGGGGAAGTGCTTGACCGCGTGCTGTTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGCCAACGCCAGCAACAACAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAAATTTGATTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGGGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTGGCCACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCCTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAGGGCAGACTCTATCGTTGGCGGTCACCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTTAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCGGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._347_T_KS_AB588636 ATGTTGGGGAGGTGCTTGACCGCGTGCTGTTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGCCAACGCCAGCAACAGCAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAAATTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGAGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTAGCCACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAAGGCAGACTCTATCGTTGGCGGTCACCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._4034_2_V_2008_FJ972733 ATGTTGGAGAAATGCTTGACCGCGGGCTATTGCTCGCAATTGCTTTCTTTGTGGTGTATCGTGCCGTTCTGTTTTGCTGTGCTCGCCAACGCCAGCGACAACAGCAGCTCCCATCTACAGCTGATTTACAACTTGACGCTATGTGAGCTGAATGGCACAGATTGGCTAGCTAACAAATTTGATTGGGCAGTGGAGAGTTTTGTCATCTTTCCCGTCTTGACTCACATTGTCTCCTATGGTGCCCTCACTACCAGCCATTTCCTTGACACAGTCGCTTTAGTCACTGTGTCTACCGCCGGGTTCGTTCACGGGCGGTATGTCCTAAGTAGCATCTACGCGGTCTGTGCCCTGGCTGCGTTGACTTGCTTCGTCATTAGGTTTGCAAAGAATTGCATGTCCTGGCGCTACGCGTGTACCAGATATACCAACTTTCTTCTGGACACTAAGGGCAGACTCTATCGTTGGCGGTCGCCTGTCATCATAGAGAAAAGGGGCAAAGTTGAGGTCGAAGGTCATCTGATCGACCTCAAAAGAGTTGTGCTTGATGGTTCCGTGGCAACCCCTATAACCAGAGTTTCAGCGGAACAATGGGGTCGTCCTTAG- Porcine_reproductive_and_respiratory_syndrome_virus._5112HCM_HQ700878 ATGTTGGGGAAGTGCTTGACCGCGTGCTGTTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGCCAACGCCAGCAACAGCAACAGCTCTCATATTCAGTTGATTTATAATTTGACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAAATTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGAGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTAGCCACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAAGGCAGACTCTATCGTTGGCGGTCACCCGTCATTGTAGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._ATCC_VR_2332_U87392 ATGTTGGAGAAATGCTTGACCGCGGGCTGTTGCTCGCGATTGCTTTCTTTGTGGTGTATCGTGCCGTTCTGTTTTGCTGTGCTCGCCAACGCCAGCAACGACAGCAGCTCCCATCTACAGCTGATTTACAACTTGACGCTATGTGAGCTGAATGGCACAGATTGGCTAGCTAACAAATTTGATTGGGCAGTGGAGAGTTTTGTCATCTTTCCCGTTTTGACTCACATTGTCTCCTATGGTGCCCTCACTACCAGCCATTTCCTTGACACAGTCGCTTTAGTCACTGTGTCTACCGCCGGGTTTGTTCACGGGCGGTATGTCCTAAGTAGCATCTACGCGGTCTGTGCCCTGGCTGCGTTGACTTGCTTCGTCATTAGGTTTGCAAAGAATTGCATGTCCTGGCGCTACGCGTGTACCAGATATACCAACTTTCTTCTGGACACTAAGGGCAGACTCTATCGTTGGCGGTCGCCTGTCATCATAGAGAAAAGGGGCAAAGTTGAGGTCGAAGGTCATCTGATCGACCTCAAAAGAGTTGTGCTTGATGGTTCCGTGGCAACCCCTATAACCAGAGTTTCAGCGGAACAATGGGGTCGTCCTTAG- Porcine_reproductive_and_respiratory_syndrome_virus._BD_R1_JQ860381 ATGTTGGGGAAGTGCTTGACCGCGTGCTGTTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTGTCTTGCTGTGCTCGTCAACGCCAGCAACAGCAGCAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCAAAAAAATTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGGGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTGGCTACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGACTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAGGGCAGACTCTATCGTTGGCGGTCGCCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTCATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCCCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._BH58_10_JN626287 ATGTTGGGGAAGTGCTTGACCGCGTGCTGTTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGCCAACGCCAGCAACAGCAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAAATTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGAGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTAGCCACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAAGGCAGACTCTATCGTTGGCGGTCACCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._CH_1a_AY032626 ATGTTGGGGAAATGCTTGACCACGGGCTGTTGCTCGCGATTGCTTTCTTTGTGGTGTATCGTGCCGTTCTGTTTTGCTGTGCTCGTCAACGCCAACAGCAACAGCAGCTCTCATTTTCAGTTGATTTATAACTTGACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCTAACAAATTTGACTGGGCAGTGGAGACTTTTGTCATCTTTCCCGTGTTGACTCACATTGTTTCCTATGGGGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTGGTCACTGTGTCCACCGCCGGGTTTTATCACGGGCGGTATGTCTTGAGTAGCATCTACGCGGTCTGTGCTCTGGCTGCGTTGATTTGCTTCGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAGGGCAGACTCTATCGTTGGCGGTCGCCCGTTATTGTAGAGAAAGGGGGTAAGGTTGAGGTCGAGGGTCACCTGATCGACCTCAAAAGAGTTGTGCTTGATGGTTCCGTGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._CT_C2_JQ860383 ATGTTGGGGAAGTGCTTGACCGCGTGCTGTTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGCCAACGCCAGCAACAGCAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCGCAAAAATTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGAGCACTTACCACCAGCCATTTCCTTGACACAGTTGGTCTGGCCACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCT{AG}ATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAAGGCAGACTCTATCGTTGGCGGTCACCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._DC_JF748718_ ATGTTGGGGAAGTGCTTGACCGCGTGCTGTTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGCCAACGCCAGCAACAGCAACAGCTCTCATATTCAGTTGATTTACAACTTAACACTATGTGAGCTGAATGGCACAGATTGGCTGGCAAAAAAATTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGAGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTAGCCACTGTGTCCACCGCCGGATATTATCACGAGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGTTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAGGGCAGACTCTATCGTTGGCGGTCACCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCAGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._DN694_JQ860366 ATGTTGGGGAAGTGCTTGACCGCGTGCTGTTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGCCAACGCCAGCAACAGCAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAAATTTGACTGGGCGGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGAGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTAGCCACTGTGTCCACCGCCGGATATTATCACAGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAAGGCAGACTCTATCGTTGGCGGTCACCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._DT9_JQ860389 ATGTTGGGGAAGTGCTTGACCGCGTGCTATTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTTTATCTTGCTGTGCTCGCCAACGCCAACAACAGCAGCAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGTTGGCACAAAATTTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGAGCACTCACTACCAGCCATTTCCTTGACACAGTTGGTCTAGCCACTGTGTCCACCGCCGGATATTATCACGAGCGGTATGTCTTGAGCAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACTAGATATACCAACTTCCTTCTGGACACTAAAGGCAGACTCTATCGCTGGCGGTCACCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCGACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._EDRD_1_D45852 ATGTTGGGGAAATGCTTGACCGCGGGCTGTTGCTCGCGATTGCCTTTTTTGTGGTGTATCGTGCCGTTCTGTCTTGCTGTGCTCGTCAACGCCAGCGACAGCAGCAGCTCCCATTTACAGTTGATTTATAACCTGACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCTGACAAATTTGATTGGGCAGTGGAGAGTTTTGTCATCTTTCCCGTGTTGACTCACATTGTTTCTTACTGCGCCCTCACTACCAGCCACTTCCTTGACACAGTTGGTCTGGTCGCTGTGTCTACCGCCGGGTTTTACCACGGGCGGTATGTTCTGAGTAGCATCTATGCGGTCTGTGCCCTGGCTGCGTTGGTTTGCTTCGTCATCAGATTGACGAAGAATTGCATGTCCTGGCGCTACTCATGTACCAGATATACCAACTTTCTTCTGGATACCAAGGGCAGACTCTATCGTTGGCGGTCGCCCGTCATCATAGAGAAAGGGGGTAAGGTTGAGGTTGAAGGTCATCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTATAACCAAAGTTTCAGCGGAACAATGGGGTCATCCCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._HCMC_3341_HQ540647 ATGTTGGGGAAGTGCTTGACCGCGCGCTGTTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTCCTATCTTGCTGTGCTCGTCAACGCCAGCAACAACAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGAAAGAAAAATTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGGGCACTTACTACCAGCCATTTCCTTGACACAGTTGGTCTGGCCACTGTGTCTACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGTTGATTTGCTTTGTCATCAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCCTGTACCAGATATACCAACTTCCTTCTGGACACTAAGGGCAGACTCTATCGTTGGCGGTCGCCCGTCATTGTGGAGAAAGGGGGCAAGGTTGAGGTCGAAGGTCATCTCATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCCCTAG- 'Porcine reproductive and respiratory syndrome virus. HCMC-3867 HQ540654' ATGTTGGGGAAGTGCTTGACCGCGTGCTGTTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGCCAACGCCAGCAACAGCAACAGCTCTCATATTCAGTTGATTTATAATTTGACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAAATTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGAGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTAGCCACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAAGGCAGACTCTATCGTTGGCGGTCACCCGTCATTGTAGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._HG_RV2_JQ860391 ATGTTGGGGAAGTGCTTGACCGCGTGCTGTTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGCCAACGCCAGCAACAGCAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAAATTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGAGCACTTACCACCAGCCATTTCCTTGACACAGTTGGTCTAGCCACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAAGGCAGACTCTATCGTTGGCGGTCACCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._JNHS_HM016158 ATGTTGGGGAAGTGCTTGACCGCGTGCTGTTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGCCAACGCCAGCAACAGCAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAAATTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGAGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTAGCCACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAGGGCAGACTCTATCGTTGGCGGTCACCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._JXA1_EF112445 ATGTTGGGGAAGTGCTTGACCGCGTGCTGTTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGTCAACGCCAGCAACAACAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAAATTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGGGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTGGCCACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAGGGCAGACTCTATCGTTGGCGGTCGCCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACTATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._JilinTN1_JN157760 ATGTTGGGGAAGTGCTTGACCGCGTGCTGTTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGCCAACGCCAGCAACAGCAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAAATTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGAGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTAGCCACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAGGGCAGACTCTATCGTTGGCGGTCACCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- 'Porcine reproductive and respiratory syndrome virus. MD-001 AF121131' ATGTTGGGGAACTGCTTGACCGTGGGCTGTTGCTCGCGGTCGCTTTTTTTGTGGTGTATCGTGCCGTTCTGTTTAGCTGCGCTCGTCAGCGCCAACGGAAACAGCAGCTCTTATTCCCAGTTGATTTATAACCTGACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCAAAAAAATTTGATTGGGCAGTGGAGACTTTTGTTATCTTTCCCGTGATTACTCACATCGTTTCCTACGGTGCCCTTACTACCAGCCACCTCCTTGATACAGTTGGTCTGGTCACTGTATCCACCGCCGGGTTCTATCACGGGCGGTATGTCTTGAGTAGCATCTATGCGGTCTGTGCCCTGGCTGCGCTAATTTGCTTCGTCATTAGACTGGCGAAGAATTGCATGTCCTGGCGCTACTCATGTACCAGGTACACCAACTTTCTTCTAGATACTAAGGGCAGAATTTATCGTTGGCGATCGCCCGTCATCATAGAGAAAGGGGGTAAAGTTGAGGTCGAAGGCCATTTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTGTAACCAGAATTCCAGCGGAACGATGGGGTCGTCCCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._MLV_RespPRRS_AF159149 ATGTTGGAGAAATGCTTGACCGCGGGCTGTTGCTCGCAATTGCTTTCTTTGTGGTGTATCGTGCCGTTCTGTTTTGCTGTGCTCGCCAACGCCAGCAACGACAGCAGCTCCCATCTACAGCTGATTTACAACTTGACGCTATGTGAGCTGAATGGCACAGATTGGCTAGCTAACAAATTTGATTGGGCAGTGGAGAGTTTTGTCATCTTTCCCGTTTTGACTCACATTGTCTCCTATGGTGCCCTCACTACCAGCCATTTCCTTGACACAGTCGCTTTAGTCACTGTGTCTACCGCCGGGTTTGTTCACGGGCGGTATGTCCTAAGTAGCATCTACGCGGTCTGTGCCCTGGCTGCGTTGACTTGCTTCGTCATTAGGTTTGCAAAGAATTGCATGTCCTGGCGCTACGCGTGTACCAGATATACCAACTTTCTTCTGGACACTAAGGGCGGACTCTATCGTTGGCGGTCGCCTGTCATCATAGAGAAAAGGGGCAAAGTTGAGGTCGAAGGTCATCTGATCGACCTCAAAAGAGTTGTGCTTGATGGTTCCGTGGCAACCCCTATAACCAGAGTTTCAGCGGAACAATGGGGTCGTCCTTAG- Porcine_reproductive_and_respiratory_syndrome_virus._Miyagi08_2_AB546105 ATGTTGGGGAAATGCTTGACCGCGGGCTGTTGCTTGCGATTGCCTTTTTCGTGGTGTATCATGCCGTTCTGTCTTGCTGTGCTCGTCAACGCCAACGGCAACAGCAGCTCTCATTTACAGTTGATTTATAACTTGACGTTATGTGAGCTGAACGGCACAGATTGGCTGGCTGGTAATTTTGATTGGGCAGTGGAGAGTTTCGTTATTTTCCCTGTACTGACTCATATTGTTTCCTATGGCGCCCTCACCACTAGCCATTTCCTCGACACAGTTGGCTTGGTCACTGTGTCTACCACCGGTTTTTACCATGAGCGGTATGTTCTGAGTAGCATTTATGCGGTTTGTGCCCTGGCCGCATTGATTTGCTTCGTCATTAGGTTGACGAAGAACTGCATGTCCTGGCGCTACTCATGTACTAGATATACCAACTTCCTCCTGGACACCAAGGGCAGACTCTATCGTTGGCGGTCGCCCGTCATCATAGAGAAAGGAGGCAAAGCTGAGGTTGAAGGTCATTTGATTGACCTAAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTATAACCAAAGTTTCAGCGGAACAATGGGGTCGTCCTTAG- Porcine_reproductive_and_respiratory_syndrome_virus._NA_CAM_C008_2008_KF698641 ATGTTGGGGAAGTGCTTGACCGCGTGCTGTTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGTCAACGCCAGCAACAACAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAAATTTGACTGGGCAGTGGAGATTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGGGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTGGCCACTGTGTCCACCGCCGGATATCATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAGGGCAGACTCTATCGTTGGCGGTCGCCTGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTCATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._NA_CAM_C044_2010_KF698642 ATGTTGGGGAAGTGCTTGACCGCGTGCTATTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGCCAACGCCAGCAACAGCAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAAATTTGACTGGGCAGTGGAGACTTTTGTCATTTTCCCCGTGTTGACTCACATTGTTTCCTATGGAGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTAGCCACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGATACTAAAGGCAGACTCTATCGTTGGCGGTCACCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._NA_CAM_C182_2011_KF698645 ATGTTGGGGAAGTGCTTGACCGCGTGCTATTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGCCAACGCCAGCAACAGCAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAAATTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGAGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTAGCCACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTTCTTCTGGACACTAAAGGCAGACTCTATCGTTGGCGGTCACCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCATCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._NA_CAM_C204_2012_KF698646 ATGTTGGGGAAGTGCTTGACCGCGTGCTACTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGCCAACGCCAGCAACAGCAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAAATTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTGTCCTATGGAGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTAGCCACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAAGGCAGACTCTATCGTTGGCGGTCACCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCATCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._NA_LAO_L167_2011_KF698648 ATGTTGGGGAAGTGCTTGACCGCGTGCTGTTGCTCGCGATTGCCTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGCCAACGCCAGCAACAGCAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAGAAATTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGAGCACTCACCACCAGCCATTTCCTTGACACAGTTGGCCTAGCCACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCCCTGGCTGCGCTGATTTGCTTTGCCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTAGACACTAAGGGCAGACTCTATCGTTGGCGGTCACCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGGAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._NA_LAO_L232_2012_KF698649 ATGTTGGGGAAGTGCTTGACCGCGTGCTATTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGCCAACGCCAGCAACAGCAGCAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAAATTTGACTGGGCAGTGGAGACTTTTGTCATTTTCCCCGTGTTGACTCACATTGTTTCCTATGGAGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTAGCCACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACTAGATATACCAACTTCCTTCTGGACACTAAAGGCAGACTCTATCGTTGGCGGTCACCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._NB_04_FJ536165 ATGTTGGGGAAATGCTTGACCGCGGGCTGTTGCTCGCGATTGCTTTCTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGTCAACGCCAGCAACAACAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAGATTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGGGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTGGCCACTGTGTCCACCGCCGGATATTATCACAGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTGTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAGGGCAGACTCTATCGTTGGCGGTCGCCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGTGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._PL97_1_AY585241 ATGTTGGAGAAATGCTTGACCGCGGGCTGTTGCTCGCAATTGCTTTCTTTGTGGTGTATCGTGCCGTTCTGTTTTGCTGTGCTCGCCAACGCCAGCAACGACAGCAGCTCCCATCTACAGCTGATTTACAACTTGACGCTATGTGAGCTGAATGGCACAGATTGGCTAGCTAACAAATTTGATTGGGCTGTGGAGAGTTTTGTCATCTTTCCCGTTTTGACTCACATTGTCTCCTATGGTGCCCTCACTACCAGCCATTTCCTTGACACAGTCGCTTTAGTCACTGTGTCTACCGCCGGGTTTGTTCACGGGCGGTATGTCCTAAGTAGCATCTACGCGGTCTGTGCCCTGGCTGCGTTGACTTGCTTCGTCATTAGGTTTGCAAAGAATTGCATGTCCTGGCGCTACGCGTGTACCAGATATACCAACTTTCTTCTGGACACTAAGGGCAGACTCTATCGTTGGCGGTCGCCTGTCATCATAGAGAAAAGGGGCAAAGTTGAGGTCGAAGGTCATCTGATCGACCTCAAAAGAGTTGTGCTTGATGGTTCCGTGGCAACCCCTATAACCAGAGTTTCAGCGGAACAATGGGGTCGTCCTTAG- Porcine_reproductive_and_respiratory_syndrome_virus._RespPRRS_MLV_AF066183 ATGTTGGAGAAATGCTTGACCGCGGGCTGTTGCTCGCAATTGCTTTCTTTGTGGTGTATCGTGCCGTTCTGTTTTGCTGTGCTCGCCAACGCCAGCAACGACAGCAGCTCCCATCTACAGCTGATTTACAACTTGACGCTATGTGAGCTGAATGGCACAGATTGGCTAGCTAACAAATTTGATTGGGCAGTGGAGAGTTTTGTCATCTTTCCCGTTTTGACTCACATTGTCTCCTATGGTGCCCTCACTACCAGCCATTTCCTTGACACAGTCGCTTTAGTCACTGTGTCTACCGCCGGGTTTGTTCACGGGCGGTATGTCCTAAGTAGCATCTACGCGGTCTGTGCCCTGGCTGCGTTGACTTGCTTCGTCATTAGGTTTGCAAAGAATTGCATGTCCTGGCGCTACGCGTGTACCAGATATACCAACTTTCTTCTGGACACTAAGGGCGGACTCTATCGTTGGCGGTCGCCTGTCATCATAGAGAAAAGGGGCAAAGTTGAGGTCGAAGGTCATCTGATCGACCTCAAAAGAGTTGTGCTTGATGGTTCCGTGGCAACCCCTATAACCAGAGTTTCAGCGGAACAATGGGGTCGTCCTTAG- Porcine_reproductive_and_respiratory_syndrome_virus._Sar01_2013_ORF5 ATGTTGGGGGAGTGCTTGACCGCGGGCTGTTGCTCGCAATTGCTTTCTTTGTGGTGTATCGTGCCGTTCTGTTTTGCTGTGCTCGCCAACGCCAGCAACGACAGCAGCTCCCATCTACAGCTGATTTACAACTTGACGCTATGTGAGCTGAATGGCACAGATTGGCTAGCTAACAAATTTGATTGGGCAGTGGAGAGTTTTGTCATCTTTCCCGTTTTGACTCACATTGTCTCCTATGGTGCCCTCACTACCAGCCATTTCCTTGACACAGTCGCTTTAGTCACTGTGTCTACCGCCGGGTTTGTTCACGGGCGGTATGTCCTAAGTAGCATCTACGCGGTCTGTGCCCTGGCTGCGTTGACTTGCTTCGTCATTAGGTTTGCAAAGAATTGCATGTCCTGGCGCTACGCGTGTACCAGATATACCAACTTTCTTCTGGACACTAAGGGCGGACTCTATCGTTGGCGGTCGCCTGTCATCATAGAGAAAAGGGGCAAAGTTGAGGTCGAAGGTCATCTGATCGACCTCAAAAGAGTTGTGCTTGATGGTTCCGTGGCAACCCCAATAACCAGAGTTTCAGCGGAACAATGGGGTCGTCCTTAG- Porcine_reproductive_and_respiratory_syndrome_virus._Sel01_2014_ORF5 ATGTTGGGGAAATGCTTGACCGGGGGCTGTTGCTCGTCATCGCTTTTTTTGTGGTGTATCGTGCCGTTTTGTCTTGCTGCGCTCGTCAGCGCCAACAACAACCACAGCTCCCATTTACAATTGATTTATAAATTGACGCTATGTGAGCTGAATGGCACAGATTGGCTGGGTAACAAATTCGATTGGGCTGTTGAGACTTTTGTCATCTTCCCTGTGATAACCCATATTGTTTCTTATGGTGCCCTTACCACCAGCCATTTCCTTGACACGGTCGCTTTAGTCACTGTGTCTACCGCCGGATATTATCACGAGCGGTATGTTTTGAGTAGCATCTACGCGGTTTGTGCCCTGGCCGCGTTGATTTGCTTTGTCATTAGATTGACGAAGAATTGCATGTCTTGGCGCTACTCTTGTACTAGGTACACCAACTTCCTTTTGGACACCAAGGGCAGGCTCTATCGCTGGCGGTCGCCCGTCATCATAGAGAAAGAGGGTAAGGTTGAGGTCGAAGGTCATCTGATCGACCTCAAAAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAAAGTTTCAGCGGAACGATGGGGTCGTCCCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._XL2008_EU880436 ATGTTGGGCAAGTGCTTGACCGCGTGCTGTTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGTCAACGCCAGCAACAACAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAAATTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGGCCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTGGCCACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAGGGCAGACTCTATCGTTGGCGGTCGCCCGTCATTGTGGAGAAAGGGCGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGCTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus.YD_JF748717 ATGTTGGGGAAGTGCATGACCGCGTGCTGTTGCTCGCGATTGCCTTTTTTGTGGTGTATCGTGCCGTCCTATCTTGCTGTGCTCGTCAACGCCAGCAACAACAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAAATTTGACTGGGCAGCGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGGGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTGGCCACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAGGGCAGACTCTATCGTTGGCGGTCGCCCGTCATTGTGGAAAAAAGGGGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACTATGGGGTCGTCTCTAG- ; END; BEGIN TREES; TITLE Porcine_Reproductive_&_Respiratory_Syndrome_Virus_ORF7; LINK TAXA = Taxa2; TRANSLATE 1 Porcine_reproductive_and_respiratory_syndrome_virus._Sar01_2013_ORF7, 2 Porcine_reproductive_and_respiratory_syndrome_virus._Sel01_2014_ORF7, 3 Porcine_reproductive_and_respiratory_syndrome_virus._ATCCVR_2332_U87392.3, 4 Porcine_reproductive_and_respiratory_syndrome_virus._JN_HS_HM016158, 5 Porcine_reproductive_and_respiratory_syndrome_virus._RespPRRS_MLV_AF066183, 6 Porcine_reproductive_and_respiratory_syndrome_virus._JXA1_EF112445, 7 Porcine_reproductive_and_respiratory_syndrome_virus._CH_1a_AY032626, 8 Porcine_reproductive_and_respiratory_syndrome_virus._BH58_10_JN626287, 9 Porcine_reproductive_and_respiratory_syndrome_virus._07QN_FJ394029_, 10 Porcine_reproductive_and_respiratory_syndrome_virus._NB_04_FJ536165, 11 Porcine_reproductive_and_respiratory_syndrome_virus._XL2008_EU880436, 12 Porcine_reproductive_and_respiratory_syndrome_virus._YD_JF748717, 13 Porcine_reproductive_and_respiratory_syndrome_virus._DC_JF748718, 14 Porcine_reproductive_and_respiratory_syndrome_virus._BB0907_F44_KM453699, 15 Porcine_reproductive_and_respiratory_syndrome_virus._BB0907_s34_KM453698, 16 Porcine_reproductive_and_respiratory_syndrome_virus._DT7_JQ860419, 17 Porcine_reproductive_and_respiratory_syndrome_virus._DN1107_JQ860406_, 18 Porcine_reproductive_and_respiratory_syndrome_virus._DN444_JQ860392, 19 Porcine_reproductive_and_respiratory_syndrome_virus._HCM_CC3_JQ860410, 20 Porcine_reproductive_and_respiratory_syndrome_virus._RVRp22_KM386622_, 21 Porcine_reproductive_and_respiratory_syndrome_virus._FJSD_KP998474_, 22 Porcine_reproductive_and_respiratory_syndrome_virus._DK_2004_1_7_PI_KC862578, 23 Porcine_reproductive_and_respiratory_syndrome_virus._DK_1997_19407B_KC862576, 24 Porcine_reproductive_and_respiratory_syndrome_virus._YN_2011_JX857698, 25 Porcine_reproductive_and_respiratory_syndrome_virus._MN1843UTR_FJ629371, 26 Porcine_reproductive_and_respiratory_syndrome_virus._pMLV_MN184ORF56_FJ629369, 27 Porcine_reproductive_and_respiratory_syndrome_virus._V7_HA_myc_FJ524376; TREE Imported_tree_1 = [&R] ((((((((((17:0.0,18:0.0)0.8330:0.00270378,16:0.00271456)0.5750:0.0027032,(1:0.01930034,4:0.00269981)0.5160:0.00264224)0.3390:0.0,8:0.00269971)0.0040:0.00223806,(14:0.0,15:0.0)0.2220:0.0)0.4970:0.0,19:0.00269764)0.8560:0.00818816,((9:0.00542274,11:0.00545264)0.1490:6.0597E-4,(6:0.0,(12:0.0,13:0.0)0.1860:0.0)0.2060:0.0)0.7700:0.0035538)0.8870:0.00830984,10:0.00535183)0.9380:0.01382699,7:0.01665389)1.0000:8.5212E-4,(2:0.0164737,((3:0.0,(5:0.0,(20:0.0,(21:0.0,(22:0.0,(23:0.0,(24:0.0,(25:0.0,26:0.0)0.0660:0.0)0.0130:0.0)0.0060:0.0)0.0050:0.0)0.0040:0.0)0.0020:0.0)0.0030:0.0)0.0170:0.0,27:0.0)0.3300:6.243E-4)1.0000:0.03888405); END; BEGIN TREES; TITLE Porcine_Reproductive_&_Respiratory_Syndrome_Virus_ORF5; LINK TAXA = Taxa1; TRANSLATE 1 Porcine_reproductive_and_respiratory_syndrome_virus._Sar01_2013_ORF5, 2 Porcine_reproductive_and_respiratory_syndrome_virus._Sel01_2014_ORF5, 3 Porcine_reproductive_and_respiratory_syndrome_virus._ATCC_VR_2332_U87392, 4 Porcine_reproductive_and_respiratory_syndrome_virus._JNHS_HM016158, 5 Porcine_reproductive_and_respiratory_syndrome_virus._RespPRRS_MLV_AF066183, 6 Porcine_reproductive_and_respiratory_syndrome_virus._JXA1_EF112445, 7 Porcine_reproductive_and_respiratory_syndrome_virus._4034_2_V_2008_FJ972733, 8 Porcine_reproductive_and_respiratory_syndrome_virus._5112HCM_HQ700878, 9 Porcine_reproductive_and_respiratory_syndrome_virus._CH_1a_AY032626, 10 Porcine_reproductive_and_respiratory_syndrome_virus._MLV_RespPRRS_AF159149, 11 Porcine_reproductive_and_respiratory_syndrome_virus._PL97_1_AY585241, 12 Porcine_reproductive_and_respiratory_syndrome_virus._NA_LAO_L232_2012_KF698649, 13 Porcine_reproductive_and_respiratory_syndrome_virus._NA_LAO_L167_2011_KF698648, 14 Porcine_reproductive_and_respiratory_syndrome_virus._BH58_10_JN626287, 15 Porcine_reproductive_and_respiratory_syndrome_virus._NA_CAM_C204_2012_KF698646, 16 Porcine_reproductive_and_respiratory_syndrome_virus._NA_CAM_C182_2011_KF698645, 17 Porcine_reproductive_and_respiratory_syndrome_virus._NA_CAM_C044_2010_KF698642, 18 Porcine_reproductive_and_respiratory_syndrome_virus._NA_CAM_C008_2008_KF698641, 19 Porcine_reproductive_and_respiratory_syndrome_virus._HCMC_3341_HQ540647, 20 'Porcine reproductive and respiratory syndrome virus. HCMC-3867 HQ540654', 21 Porcine_reproductive_and_respiratory_syndrome_virus._07QN_FJ394029, 22 Porcine_reproductive_and_respiratory_syndrome_virus._347_T_KS_AB588636, 23 Porcine_reproductive_and_respiratory_syndrome_virus._DN694_JQ860366, 24 Porcine_reproductive_and_respiratory_syndrome_virus._BD_R1_JQ860381, 25 Porcine_reproductive_and_respiratory_syndrome_virus._DT9_JQ860389, 26 Porcine_reproductive_and_respiratory_syndrome_virus._CT_C2_JQ860383, 27 Porcine_reproductive_and_respiratory_syndrome_virus._HG_RV2_JQ860391, 28 Porcine_reproductive_and_respiratory_syndrome_virus._NB_04_FJ536165, 29 Porcine_reproductive_and_respiratory_syndrome_virus._XL2008_EU880436, 30 Porcine_reproductive_and_respiratory_syndrome_virus.YD_JF748717, 31 Porcine_reproductive_and_respiratory_syndrome_virus._DC_JF748718_, 32 Porcine_reproductive_and_respiratory_syndrome_virus._JilinTN1_JN157760, 33 'Porcine reproductive and respiratory syndrome virus. MD-001 AF121131', 34 Porcine_reproductive_and_respiratory_syndrome_virus._Miyagi08_2_AB546105, 35 Porcine_reproductive_and_respiratory_syndrome_virus._EDRD_1_D45852, 36 Porcine_reproductive_and_respiratory_syndrome_virus._02PB1_AY297116; TREE Imported_tree_1 = [&R] ((((((((((((((((12:0.0,25:0.01686885)0.5860:0.00334426,17:0.00166863)0.5270:0.00166783,(15:0.00334795,16:0.00166817)0.8020:0.00166736)0.5780:0.00166812,((8:0.0,20:0.0)0.9590:0.00500881,(14:0.0,22:0.00166549)0.3740:0.0)0.1050:0.0)0.0510:0.0,23:0.00333461)0.1610:0.0,(26:0.00333656,27:0.0)0.4960:0.0016655)0.4390:0.00166549,(13:0.01174071,(4:0.0,32:0.0)0.6410:0.0)0.2440:0.0)0.2660:0.0,31:0.01006909)0.8380:0.00503314,21:0.0067185)0.7420:0.00334306,(18:0.00501264,(19:0.0217329,24:0.00919243)0.3240:0.00297776)0.2790:0.00167769)0.0350:0.0,(29:0.00672141,(6:0.0,30:0.01007057)0.6180:0.00166935)0.2460:0.0)0.5340:0.00661188,28:0.00515231)0.9960:0.03166108,9:0.00830853)0.9760:0.02894979,(3:0.0,(7:0.00835792,(11:0.00166635,(1:0.00669527,(5:0.0,10:0.0)0.7730:0.0)0.4880:0.00166438)0.2960:0.0)0.3690:0.00166438)1.0000:0.05129345)0.3100:0.00801306,(2:0.08194515,33:0.07303037)0.2020:0.01328496)0.4050:0.00808196,(36:0.11266664,(34:0.07671839,35:0.02397157)0.5020:0.01324055)0.4050:0.0042419); END;