#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 26, 2024; 3:25 GMT TreeBASE (cc) 1994-2008 Study reference: Meshram V., Kapoor N., Chopra G., & Saxena S. 2017. Muscodor camphora: a new endophytic fungal species from India. Mycosphere, 8(4): 568-582. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S20515] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=21; TAXLABELS Muscodor_albus_AF324336 Muscodor_cinnanomi_GQ848369 Muscodor_crispans_EU195297 Muscodor_darjeelingensis_JQ409997 Muscodor_equiseti_JX089322 Muscodor_fengyangensis_ZJLQ024_HM034855 Muscodor_fengyangensis_ZJLQ070_HM034853 Muscodor_kashayum_KC481680 Muscodor_musae_JX089323 Muscodor_oryzae_JX089321 Muscodor_roseus_AY034665 Muscodor_sp._1639CCSTITD_KC481681 Muscodor_strobelli_JQ409999 Muscodor_suthepensis_JN558830 Muscodor_sutura_JF938595 Muscodor_tigerii_JQ409998 Muscodor_vitigenus_AY100022 Muscodor_yucatanensis_FJ917287 Taphrina_sadebeckii_AF494056 Xylaria_arbuscula_AF163028 Xylaria_mali_AF163040 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M42563] TITLE 'Muscodor ITS1-5.8S-ITS2'; LINK TAXA = Taxa1; DIMENSIONS NCHAR=758; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Muscodor_albus_AF324336 ---TGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTTT-----------CCA-AACTCCCAACCCTATGTGAACTTACCTTT-GTTGCTTCGGC-GGCGGAG--GCTACCCTATAGGGGA-TACCACATAGTGG----TTACCCTGTAGTCCCAGG-------TGCTAGATCGT-------GCTCAACGTCTTATCGT-------CTACGAC----TAGCTACCCGGTGGCCCTCCCCGCCGGCGGCCAACTAAACT--CTGTT--TT-TATGGCATTCTGAATTATAAACTTAA-TAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCC-TGTTCGAGCGTC-ATTTCACCACTTA--AGCCC-TGTTGCT------TAGCGTTGGGAGCCTACGGCACTGCCCGTAG-----CTCCCTAAAGTGATTGGCGGAGTTGGTTCTCACTCTAGGC---GTAGTAAATCTATC-------TCGCCT--CTGTAGTGGTTCCGGCCCCTG--CCGTAAAACCCCCTAT---------------------ATCAAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCCGGGAGGA Muscodor_cinnanomi_GQ848369 -----------AAAATCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTTT-----------CTA-AACTCCCAACCCTATGTGAACTTACCTTT-GTTGCTTCGGC-GGCGGAG--GCTACCCTATAGGGGA-TACCACATAGTGG----TTACCCTGTAGTCCCAGG-------TGCTAGATCGT-------GCTCAACGTCTTATCGT-------CTACGAC----TAGCTACCCGGTGGCCCTCCCCGCCGGCGGCCAACTAAACT--CTGTT--TT-TATGGCATTCTGAATTATAAACTTAA-TAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCC-TGTTCGAGCGTC-ATTTCACCACTTA--AGCCC-TGTTGCT------TAGCGTTGGGAGCCTACGGCACTGCCCGTAG-----CTCCCTAAAGTGATTGGCGGAGTTGGTTCTCACTCTAGGC---GTAGTAAATCTATC-------TCGCCT--CTGTAGTGGTTCCGGCCCCCTGCCCGTAAAACCCCCCTA---------------------TATCAAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAAA----------- Muscodor_crispans_EU195297 --------------------------------------------------------------------------------------CCCAACCCTATGTGAACTTACCTTT-GTTGCTTCGGC-GGCGGAG--GCTACCCTATAGGGGA-TACCACATAGTGG----TTACCCTGTAGTCCCAGG-------TGCTAGATCGT-------GCTCAACGTCTTATCGT-------CTACGAC----TAGCTACCCGGTGGCCCTCCCCGCCGGCGGCCAACTAAACT--CTGTT--TT-TATGGCATTCTGAATTATAAACTTAA-TAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCC-TGTTCGAGCGTC-ATTTCACCACTTA--AGCCC-TGTTGCT------TAGCGTTGGGAGCCTACGGCACTGCCCGTAG-----CTCCCTAAAGTGATTGGCGGAGTTGGTTCTCACTCTAGGC---GTAGTAAATCTATC-------TCGCCT--CTGTAGTGGTTCCGGCCCCTG--CCGTAAAACCCCCTAT---------------------ATCAAAGGTTGA-------------------------------------------------------- Muscodor_darjeelingensis_JQ409997 ----------------------------------------------------------------------------------------------------------------------TCGG------GAG--GCTACCCTATAGGGGA-TACCACATAGTGG----TTACCCTGTAGTCCCAGG-------TGCTAGATCGT-------GCTCAACGTCTTATCGT-------CTACGAC----TAGCTACCCGGTGGCCCTCCCCGCCGGCGGCCAACTAAACT--CTGTT--TT-TATGGCATTCTGAATTATAAACTTAA-TAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGA?GAAGAACGCAGCGAAACGCGATAAGTAACGTGAATTGCCGAATTCAGTGAATCCTCGAATCTTTGAACGCCCATTGCGCCCGTTAGCCTT?TAGTGGGCATGCAATGTTCGAGCGTCTATTTCACCACTTA--AGCCC-TGTTGCT------TAGCGTTGGGAGCCTACGGCACTGCCCGTAG-----CTCCCTAAAGTGATTGGCGGAGTTGGTTCTCACTCTAGGC---GTAGTAAATCTATC-------TCGCCT--CTGTAGTGGTTCCGGCCCCTA--A-------------------------------------------------------------------------------------------------------- Muscodor_equiseti_JX089322 ----GAAGTAAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTTT-----------CTA-AACTCCCAACCCTATGTGAACTTACCTTT-GTTGCTTCGGC-GGCGGAG--GCTACCCTGCGGGAGAATACCACTTAGTGG----TTACCCTGTAGTTTCAGG--------------------------------------------------TACATC-----AGCTACCCGGTAGTCATCCCCGCCGGCGGCCAACTAAACT--CTGTT--TTCTTTGGAATTCTGAATAACAAACTTAA-TAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCC-TGTTCGAGCGTC-ATTTCACCACTTA--AGCCT-TGTTGCT------TAGCGTTGGGAGCCTACGGCACGGCCCGTAG-----CTCCTTAAAGTGATTGGCGGAGTTGGTTCTCACTCTAAGC---GTAGTAATTATATC-------TCGCTT--CTGTAGTGGTCCCGGCCCCTG--CCGTAAAACCC-CTTA---------------------TACAAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAG--------- Muscodor_fengyangensis_ZJLQ024_HM034855 ----------------------------------------------------------CAGAGTTTT-----------CTA-AACTCCCAACCCTTTGTGAACCTACCATC-GTTGCTTCGGC-GGCGGAGGTGCTACGCTGCAAGG---CGCTACCCTGTAG----TTACCCTGTAGTCCCAGGGAGCTGTCATCAGCTCTTTAGGGGAGCTCACAGCCTAGCGATGTTTTCGTTACAGGGCTGTAGCTCCG-GACTGCCCTCCCCGCCGGCGGCCAACTAAACT--CTGTT--TTCTCTAAAACTCTGAATCATAAACTTAA-TAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCC-TGTTCGAGCGTC-ATTTCACCACTTA--AGCCC-TGTTGCT------TAGCGTTGGGGGCCTACGGCACAGCCTGTAG-----CCCTTTAAAGTGATTGGCGGAGTTAGTTCTATCTCTAAGC---GTAGTAATTTCTTC-------TCGCTT--CTGCAGTAGTGCTGGCCCCCG--CCGTAAAACCCTTTTA---------------------TACAATGG------------------------------------------------------------ Muscodor_fengyangensis_ZJLQ070_HM034853 ----------------------------------------------------------CAGAGTTTT-----------ATA-AACTCCCAACCCTTTGTGAACCTACCATC-GTTGCTTCGGC-GGCGGAGGTGCTACGCTGCAAGG---CGCTACCCTGTAG----TTACCCTGTAGTCCCAGGGAGCTGTCATCAGCTCTTTAGGGGAGCCCACAGCCTAGCGACGTTTTCGTTACAGGGCTGTAGCTCCG-GACTGCCCTCCCCGCCGGCGGCCAACTAAACT--CTGTT--TTCTTTGGAACTCTGAATCATAAACTTAA-TAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCC-TGTTCGAGCGTC-ATTTCACCACTTA--AGCCC-TGTTGCT------TAGCGTTGGGGGCCTACGGCACAGCCTGTAG-----CCCCTTAAAGTGATTGGCGGAGTTGGTTCTATCTCTAAGC---GTAGTAATTTCTTC-------TCGCTT--CTGCAGTAGTGCTGGCCCCCG--CCGTAAAACCCTCCTA---------------------TACAATGG------------------------------------------------------------ Muscodor_kashayum_KC481680 ---------------------------------------------------------------------------------------------------------------------CTCGG-----GGAG--GCTACCCTATAGGGGA-TACCACATAGTGG----TTACCCTGTAGTCCCAGG-------TGCTAGATCGT-------GCTCAACGTCTTATCGT-------CTACGAC----TAGCTACCCGGTGGCCCTCCACGCCGGCGGCCAACTAAACT--CTGTT--TT-TATGGCATTCTGAATTATAAACTTAA-TAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCC-TGTTCGAGCGTC-ATTTCACCACTTA--AGCCC-TGTTGCT------TAGCGTTGGGAGCCTACGGCACTGCCCGTAG-----CTCCCTAAAGTGATTGGCGGAGTTGGTTCTCACTCTAGGC---GTAGTAAATCTATC-------TCGCCT--CTGTAGTGGTTCCGGCCCCTG--G-------------------------------------------------------------------------------------------------------- Muscodor_musae_JX089323 ----------------------------------------GACAGCGGA?GGA?ATTACAGAGTTTT-----------CTA-AACTCCCAACCCTATGTGAACTTACCTTT-GTTGCTTCGGC-GGCGGAG--GCTACCCTATAGGGGA-TACCACATAGTGG----TTACCCTGTAGTCCCAGG-------TGCTAGATCGT-------GCTCAACGTCTTATCGT-------CTACGAC----TAGCTACCCGGTGGCCCTCCCCGCCGGCGGCCAACTAAACT--CTGTT--TT-TATGGCATTCTGAATTATAAACTTAA-TAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCC-TGTTCGAGCGTC-ATTTCACCACTTA--AGCCC-TGTTGCT------TAGCGTTGGGAGCCTACGGCACTGCCCGTAG-----CTCCCTAAAGTGATTGGCGGAGTTGGTTCTCACTCTAGGC---GTAGTAAATCTATC-------TCGCCT--CTGTAGTGGTTCCGGCCCCTG--CCGTAAAACCCCCTAT---------------------ATCAAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAA- Muscodor_oryzae_JX089321 TTTTGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTTT-----------CTA-AACTCCCAACCCTATGTGAACTTACCTTT-GTTGCTTCGGC-GGCGGAG--GCTACCCTATAGGGGA-TACCACATAGTGG----TTACCCTGTAGTCCCAGG-------TGCTAGATCGT-------GCTCAACGTCTTATCGT-------CTACGAC----TAGCTACCCGGTGGCCCTCCCCGCCGGCGGCCAACTAAACT--CTGTT--TT-TATGGCATTCTGAATTATAAACTTAA-TAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCC-TGTTCGAGCGTC-ATTTCACCACTTA--AGCCC-TGTTGCT------TAGCGTTGGGAGCCTACGGCACTGCCCGTAG-----CTCCCTAAAGTGATTGGCGGAGTTGGTTCTCACTCTAGGC---GTAGTAAATCTATC-------TCGCCT--CTGTAGTGGTTCCGGCCCCTG--CCGTAAAACCCCCTAT---------------------ATCAAAGGTTGACCTCGGATCAGGTAGAAACCCCCGGAAAATT------------------------- Muscodor_roseus_AY034665 ---TGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTTT-----------CTA-AACTCCCAACCCTATGTGAACTTACCTTT-GTTGCTTCGGC-GGCGGAG--GCTACCCTATAGGGGA-TACCACATAGTGG----TTACCCTGTAGTCCCAGA-------TGCTAGATCGT-------GCTCAACGTCTTATCGT-------CTACGAC----TAGCTACCCGGTGGCCCTCCCCGCCGGCGGCCAACTAAACT--CTGTT--TT-TATGGCATTCTGAATTATAAACTTAA-TAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCC-TGTTCGAGCGTC-ATTT-ACCACTTA--AGCCC-TGTTGCT------TAGCGTTGGGAGCCTACGGCACTGCCCGTAG-----CTCCCTAAAGTGATTGGCGGAGTTGGTTCTCACTCTAGGC---GTAGTAAATCTATC-------TCGCCT--CTGTAGTGGTTCCGGCCCCTG--CCGTAAAACCCCCTAT---------------------ATCAAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCCGGAGGA- Muscodor_sp._1639CCSTITD_KC481681 ------------------------------------------------------------------------------------------------------------------TG-----------GGAG--GCTACCCTATAGGGGA-TACCACATAGTGG----TTACCCTGTAGTCCCAGG-------TGCTAGATCGT-------GCTCAACGTCTTATCGT-------CTACGAC----TAGCTACCCGGTGGCCCTCCCCGCCGGCGGCCAACTAAACT--CTGTT--TT-TATGGCATTGGGAGTGATAATCTAAA-TAATTTAAAACTTTCAACAACGGATCTCTGGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCC-TGTTCGAGCGTC-ATTTCACCACTTA--AGCCC-TGTTGCT------TAGCGTTGGGAGCCTACGGCACTGCCCGTAG-----CTCCCTAAAGTGATTGGCGGAGTTGGTTCTCACTCTAGGC---GTAGTAAATCTATC-------TCGCCT--CTGTAGTGGTTCCGGCCCCT-------AA--------------------------------------------------------------------------------------------------- Muscodor_strobelli_JQ409999 ----------------------------------------------------------------------------------------------------------------------TCGG------GAG--GCTACCCCATAGGGGA-TACCACATAGTGG----TTACCCGGTAGTCCCAGG-------TGCTAGATCGT-------GCTCAACGTCTTATGGT-------CTACGGG----CAGCTCCCCGG?GGCCCTCCCCGCCGGCGGCCAACTAAACT--C?GTT--TT-TATGGCATT?TGAATCATAAACTTAA-TAAGTTAAAACTTTCAACAACGGATCT?TTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAACGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCC-TGTTCGAGCGTC-ATTTCACCACTTA--AGCCC-TGTTCCT------?AGCGTTGGGAGCCTACGGCACTGCCCGTAG-----CTCCTTAAAGTGAT-GGCGGAGTTGTTCTCAC??TTAGGCC--GGAGTAAAT-CATC-------T?GCCT--CTCTAATGGTTCCGGCCCCCG--A-------------------------------------------------------------------------------------------------------- Muscodor_suthepensis_JN558830 ------------------------------------------------------ATTACAGAGTTTT-----------CTA-AACTCCCAACCCTATGTGAACTTACCTTT-GTTGCTTCGGC-GGCGGAG--GCTACCCTATAGGGGA-TACCACCTAGTGG----TTACCCTGTAGTCCCGGG-------TGCTGATTCTTC-------CTCAACGTCTTAT--------CGTCAAAGGTCAGTTAACCTG--GTGGCCCTCCCCGCCGGCGGCCAACTAAACT--CTGTT--TT-TATGGCATTCTGAATTATAAACTTAA-TAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCC-TGTTCGAGCGTC-ATTTCACCACTTA--AGCCC-TGTTGCT------TAGCGTTGGGAGCCTACGGCACTGCCCGTAG-----CTCCCTAAAGTGATTGGCGGAGTTGGTTCTCACTCTAGGC---GTAGTAAATCTATC-------TCGCCT--CTGTAGTGGTTCCGGCCCCTG--CCGTAAAACCCCCTAT---------------------ATCAAAGGTTGACCTCG--------------------------------------------------- Muscodor_sutura_JF938595 -----------------------------------------------------------AGAGTTTT-----------CTA-A-CTCCCAACCCTATGTGAACTTACCTTT-GTTGCTTCGGC-GGCGGAG--GCTACCCTGCGGGAGAATACCACTTAGTGG----TTACCCTGTAGTTTCAGG--------------------------------------------------TACATC-----AGCTACCCGGTAGTCATCCCCGCCGGCGGCCAACTAAACT--CTGTT--TTCTTTGGAATTCTGAATAACAAACTTAA-TAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCC-TGTTCGAGCGTC-ATTTCACCACTTA--AGCCT-TGTTGCT------TAGCGTTGGGAGCCTACGGCACGGCCCGTAG-----CTCCTTAAAGTGATTGGCGGAGTTGGTTCTCACTCTAAGC---GTAGTAATTATATC-------TCGCTT--CTGTAGTGGTCCCGGCCCCTG--CCGTAAAACCC-CTTA---------------------TACAAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAA---------------------- Muscodor_tigerii_JQ409998 ------------------------------------------------------------------------------------------------------------------TG-----------GGAG--GCTACCCTATAGGGGA-TACCACATAGTGG----TTACCCTGTAGTCCCAGG-------TGCTAGATCGT-------GCTCAACGTCTTATCGT-------CTACGAC----TAGCTACCCGGTGGCCCTCCCCGCCGGCGGCCAACTAAACT--CTGTT--TT-TATGGCATTCTGAATTATAAACTTAA-TAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCC-TGTTCGAGC------------ACTTA--AGCCC-TGTTGCT------TAGCGTTGGGAGCCTACGGCACTGCCCGTAG-----CTCCCTAAAGTGATTGGCGGAGTTGGTTCTCACTCTAGGC---GTAGTAAATCTATC-------TCGCCT--CTGTAGTGGTTCCGGCCCC-------TA---------------------------------------------------------------------------------------------------- Muscodor_vitigenus_AY100022 -----------------------------CCGTAGGTGAACCTGCGGAGGGATCATTACAGAGTTTT-----------CTA-AACTCCCAACCCTATGTGAACTTACCTTT-GTTGCTTCGGC-GGCGGAG--GCTACCCTGCGGGAGAATACCACTTAGTGG----TTACCCTGTAGTTTCAGG--------------------------------------------------TACATC-----AGCTACCCGGTAGTCATCCCCGCCGGCGGCCAACTAAACT--CTGTT--TTCTTTGGAATTCTGAATAACAAACTTAA-TAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCC-TGTTCGAGCGTC-ATTTCACCACTTA--AGCCT-TGTTGCT------TAGCGTTGGGAGCCTACGGCACGGCCCGTAG-----CTCCTTAAAGTGATTGGCGGAGTTGGTTCTCACTCTAAGC---GTAGTAATTATATC-------TCGCTT--CTGTAGTGGTCCCGGCCCCTG--CCGTAAAACCC-CTTA---------------------TACAAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA-- Muscodor_yucatanensis_FJ917287 ---------GTAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTTT-----------CTA-AACTCCCAACCCTATGTGAACTTACCTTT-GTTGCTTCGGC-GGCGGAG--GCTACCCTGCGGGGGATTACCACCTAGTGG----TTACCCTGCAGTCTCAGG--------------------------------------------------TACATC-----TGTTACCCGGTAGTCATCCCCGCCGGCGGCCAACTAAACT--CTGTT--TTCTTTGGAATTCTGAATCATAAACTTAA-TAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCC-TGTTCGAGCGTC-ATTTCACCACTTA--AGCCC-TGTTGCT------TAGCGTTGGGAGCCTACGGCATAGCCCGTAG-----CTCCTTAAAGTGATTGGCGGAGTTGGTTCTCACTCTAAGC---GTAGTAACTATATC-------TCGCTT--CTGTAGTAGTTCCGGCCCCTG--CCGTAAAACCC-CTTA---------------------TACAAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCG------- Taphrina_sadebeckii_AF494056 -----------------------------------------------AAGGATCATTAATGAAGCTTGGGCTCCGGCCCTCTCTCTTCTACACACTTGTGAACTTACACT--GTTGCTTTGGC------AG--GTTTCCGGATTGGC---TAACGCCTTGAAGG---TCAGGCCGAA-----AGG-----------------------------------------------------------------------------CGCCTGCCGA-GGACATATATCCAACCTTTTAATATTGTCTGATTCTTGTTTAAAAAC-AAATAAAAATAAAACTTTCAACAATGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCC-TGTTTGAGTGTC--ATTAATCTCTCACAAGACCTTCTTGGTCTCTGCTGATGTTGGGA-TGTGCGACCCCCTCCGGGGACGCTCTCCTCAAATGAATTGGTGCGGCCCGCCGCCCGGTTACACAACGTTCTAGGTTCGTCCAACTCGTTGCTTGACTGGCGCAACTTCGGTGCTGC--ACCTAAAGCCCGCCTTGTGCCTTGTGCTCTTGGCTACTTCATTTATTGACCTCAGATCAGGTAGGAATACGCGCTGAACTTAAGC-------------------- Xylaria_arbuscula_AF163028 ----------------------------------------CCAGCGGAGGGATCATTAAAGAGTTAA-----------TTACAACTCCCAAACCCATGTGAACTTACCTTCTGTTGCCTCGGCAGGTCGTG--TTTACCCTGTGAGGTC---CTACCCTGTAGGACCCTACCTGGTAGACACGGG---------------------------------------------------------------------------TACGCCTGCCGGTGGCCCATGAAACT--CTGTTAATTCTATGTTAT-CTGAATCTATAACTAAA-TAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCC-TGTTCGAGCGTC-ATTTCAACCCTTA--AGCCCCTGTTGCT------TAGCGTTGGGAGCCTAC-GCCT--TCTGTAG-----CTCCCCAAAGTTAGTGGCGGAGTCGGTCA-CACTCTAGAC---GTAGTAGATCTATC-------TCG--T--CTGTAGTGAGGCCGGTCCCCTG-CCGTAAAACCCCCCTAAT------------------TTTTAAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA-- Xylaria_mali_AF163040 --------------------------------------AACCAGCGGAGGGATCATTAAAGAGTTT------------TGATAACTCCCAAACCCATGTGAACTTACCTTCTGTTGCCTCGGCAGGTCGCG--TCTACCCTGTG-GCAC---CTACCCTGTAGGACCCGACCTGGTGGTCGCGGT---------------------------------------------------------------------------CATGCCTGCCGGTGGCCCTTTAAACTTTCTGTGTATTCTATGTTATTCTGAGTTGGCAACTAAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCC-TGTTCGAGCGTC-ATTTCAACCCTTA--AGCCCCTGTCGCT------TAGTGTTGGGAGCCTACAGTCT--TCTGTAG-----CTCCCTAAAGTTAGTGGCGGAGTCGGTT--CACTCTAGAC---GTAGTAGATCTATC-------TCG--T--CTATAGTTAAGCCGGTCTCTTG-CCGTAAAACCCCC-TAAT------------------TTCTCAAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA-- ; END; BEGIN TREES; TITLE 'Muscodor ITS1-5.8S-ITS2'; LINK TAXA = Taxa1; TRANSLATE 1 Muscodor_albus_AF324336, 2 Muscodor_cinnanomi_GQ848369, 3 Muscodor_crispans_EU195297, 4 Muscodor_darjeelingensis_JQ409997, 5 Muscodor_equiseti_JX089322, 6 Muscodor_fengyangensis_ZJLQ024_HM034855, 7 Muscodor_fengyangensis_ZJLQ070_HM034853, 8 Muscodor_kashayum_KC481680, 9 Muscodor_musae_JX089323, 10 Muscodor_oryzae_JX089321, 11 Muscodor_roseus_AY034665, 12 Muscodor_sp._1639CCSTITD_KC481681, 13 Muscodor_strobelli_JQ409999, 14 Muscodor_suthepensis_JN558830, 15 Muscodor_sutura_JF938595, 16 Muscodor_tigerii_JQ409998, 17 Muscodor_vitigenus_AY100022, 18 Muscodor_yucatanensis_FJ917287, 19 Taphrina_sadebeckii_AF494056, 20 Xylaria_arbuscula_AF163028, 21 Xylaria_mali_AF163040; TREE Fig._2 = [&R] (19:0.2374235,((20:0.024449,21:0.049527):0.054703,((6:0.011947,7:0.006872):0.090713,((18:0.013171,(5:0.0,(15:0.0,17:0.0):0.003496):0.017531):0.014741,(14:0.02666,(13:0.053624,((1:0.004671,11:0.003143):0.004036,(10:0.011565,((12:0.019054,(3:0.0,9:0.0):0.0):0.017719,(8:0.006891,(4:0.023029,(2:0.0,16:0.0):0.080086):0.005668):1.73101E-7):0.0):0.0):0.005156):0.007736):0.035355):0.014643):0.070846):0.2374235); END;