#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on April 19, 2024; 9:33 GMT

TreeBASE (cc) 1994-2008

Study reference:
Fountain E.D., Pauli J.N., Mendoza J.E., Carlson J., & Peery M. 2017. Cophylogenetics
and biogeography reveal a coevolved relationship between sloths and their symbiont
algae. Molecular Phylogenetics and Evolution, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S20677]

BEGIN TAXA;
        TITLE  Taxa1;
        DIMENSIONS NTAX=12;
        TAXLABELS
            Bradypus_pygmaeus_PA
            Bradypus_torquatus
            Bradypus_tridactylus_BR
            Bradypus_tridactylus_FG
            Bradypus_variegatus_BR
            Bradypus_variegatus_CO
            Bradypus_variegatus_CR
            Bradypus_variegatus_PE
            Choloepus_didactylus_BR
            Choloepus_didactylus_FG
            Choloepus_hoffmanni_CR
            Choloepus_hoffmanni_PA
            ;
END;

BEGIN TAXA;
        TITLE  Taxa2;
        DIMENSIONS NTAX=29;
        TAXLABELS
            Bradypus_pygmaeus_4PA
            Bradypus_torquatus_1BR
            Bradypus_torquatus_2BR
            Bradypus_torquatus_4BR
            Bradypus_torquatus_5BR
            Bradypus_torquatus_6BR
            Bradypus_torquatus_7BR
            Bradypus_torquatus_8BR
            Bradypus_tridactylus_1FG
            Bradypus_tridactylus_2FG
            Bradypus_tridactylus_5FG
            Bradypus_tridactylus_6FG
            Bradypus_variegatus_10CR
            Bradypus_variegatus_11CR
            Bradypus_variegatus_1CR
            Bradypus_variegatus_3CR
            Bradypus_variegatus_5CR
            Bradypus_variegatus_6CR
            Bradypus_variegatus_7CR
            Bradypus_variegatus_8CR
            Bradypus_variegatus_9CR
            Choloepus_didactylus_FG
            Choloepus_hoffmanni_1
            Choloepus_hoffmanni_3
            Choloepus_hoffmanni_4
            Choloepus_hoffmanni_5
            Choloepus_hoffmanni_7
            Choloepus_hoffmanni_8
            Choloepus_hoffmanni_9
            ;
END;

BEGIN TREES;
      TITLE Algae_phylogeny;
      LINK TAXA = Taxa2;
         TRANSLATE
            1    Bradypus_tridactylus_5FG,
            2    Bradypus_tridactylus_2FG,
            3    Bradypus_tridactylus_6FG,
            4    Bradypus_variegatus_6CR,
            5    Bradypus_variegatus_8CR,
            6    Bradypus_variegatus_9CR,
            7    Bradypus_variegatus_5CR,
            8    Bradypus_variegatus_3CR,
            9    Bradypus_pygmaeus_4PA,
            10   Bradypus_variegatus_11CR,
            11   Bradypus_variegatus_10CR,
            12   Bradypus_variegatus_1CR,
            13   Bradypus_tridactylus_1FG,
            14   Choloepus_hoffmanni_9,
            15   Choloepus_hoffmanni_7,
            16   Choloepus_hoffmanni_8,
            17   Choloepus_hoffmanni_5,
            18   Choloepus_hoffmanni_1,
            19   Choloepus_hoffmanni_4,
            20   Choloepus_hoffmanni_3,
            21   Bradypus_torquatus_7BR,
            22   Bradypus_torquatus_8BR,
            23   Bradypus_torquatus_6BR,
            24   Bradypus_torquatus_5BR,
            25   Bradypus_torquatus_4BR,
            26   Bradypus_torquatus_1BR,
            27   Choloepus_didactylus_FG,
            28   Bradypus_variegatus_7CR,
            29   Bradypus_torquatus_2BR;
      TREE Algae = [&R] ((((5:0.009223,(6:0.001298,7:0.002889):0.006629):0.059732,((4:0.009702,3:0.009734):0.017738,(1:0.00145,2:0.001483):0.016875):0.119588):0.051349,((((14:6.71E-4,(15:6.42E-4,16:6.62E-4):5.08E-4):0.002935,((17:0.001849,(18:0.001972,19:0.004184):0.002781):0.00174,20:0.003001):0.001918):0.004397,(8:0.013313,((((10:0.001575,11:0.00154):0.002414,12:0.001778):0.002235,9:0.004911):6.81E-4,13:0.006202):0.004256):0.002763):0.049355,((21:0.044408,22:0.057378):0.010753,23:0.030749):0.019382):0.054802):0.418641,(((28:0.201759,29:0.084811):0.02786,(27:0.014433,26:0.010195):0.092727):0.031744,(24:0.006137,25:0.006253):0.204006):0.369045);



END;
BEGIN TREES;
      TITLE Sloth_phylogeny;
      LINK TAXA = Taxa1;
         TRANSLATE
            1    Bradypus_variegatus_CR,
            2    Bradypus_pygmaeus_PA,
            3    Bradypus_variegatus_CO,
            4    Bradypus_variegatus_PE,
            5    Bradypus_variegatus_BR,
            6    Bradypus_tridactylus_BR,
            7    Bradypus_tridactylus_FG,
            8    Bradypus_torquatus,
            9    Choloepus_hoffmanni_CR,
            10   Choloepus_hoffmanni_PA,
            11   Choloepus_didactylus_FG,
            12   Choloepus_didactylus_BR;
      TREE sloth = [&R] (((9:0.002495,10:0.001807):0.020274,(11:0.003996,12:0.007211):0.012929):0.109703,(((1:0.011224,2:0.010894):0.029225,(3:0.013782,(((7:0.001319,6:0.001326):0.002602,5:0.003679):0.002807,4:0.00648):0.007163):0.0294):0.056189,8:0.107797):0.027711);



END;