#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 23, 2024; 12:04 GMT TreeBASE (cc) 1994-2008 Study reference: Vaczy K.Z., Nemeth M.Z., Csikos A., Kovacs G.M., & Kiss L. 2017. Dothiorella omnivora isolated from grapevine with trunk disease symptoms in Hungary. European Journal of Plant Pathology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S21196] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=24; TAXLABELS Dothiorella_americana_UCD2252MO Dothiorella_americana_UCD2272MO Dothiorella_brevicollis_CMW36463 Dothiorella_californica_CBS141587 Dothiorella_californica_VICA1 Dothiorella_iberica_CAA005 Dothiorella_iberica_CBS115041 Dothiorella_iranica_IRAN1587C Dothiorella_longicollis_CBS122068 Dothiorella_omnivora_BL52 Dothiorella_omnivora_DAR78991 Dothiorella_omnivora_M38 Dothiorella_omnivora_M7 Dothiorella_parva_BL172 Dothiorella_parva_IRAN1579C Dothiorella_prunicola_CAP187 Dothiorella_sarmentorum_CBS115038 Dothiorella_sarmentorum_IMI63581 Dothiorella_sempervirentis_IRAN1581C Dothiorella_sempervirentis_IRAN1583C Dothiorella_symphoricarposicola_MFLUCC130497 Dothiorella_symphoricarposicola_MFLUCC130498 Dothiorella_vidmadera_DAR78992 Dothiorella_vidmadera_IRAN1571C ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M41636] TITLE Dothiorella_omnivora_ITSindel_Ef1indel; LINK TAXA = Taxa1; DIMENSIONS NCHAR=27; FORMAT DATATYPE=Standard SYMBOLS= "0 1" MISSING=? GAP= -; MATRIX [ 10 20 ] [ . . ] Dothiorella_americana_UCD2252MO 000010010010101111001-11110 Dothiorella_americana_UCD2272MO 000010010010101111001-11110 Dothiorella_brevicollis_CMW36463 110-11000001-00101011001100 Dothiorella_californica_CBS141587 100110010010111111001101110 Dothiorella_californica_VICA1 100110010010111111001101110 Dothiorella_iberica_CAA005 100000010010111111001101110 Dothiorella_iberica_CBS115041 100010010010111111001101110 Dothiorella_iranica_IRAN1587C 101--0010010100110100001110 Dothiorella_longicollis_CBS122068 110-11000001-00101011001100 Dothiorella_omnivora_BL52 100110010010101111001101110 Dothiorella_omnivora_DAR78991 100110010010101111001101110 Dothiorella_omnivora_M38 100110010010101111001101110 Dothiorella_omnivora_M7 100110010010101111001101110 Dothiorella_parva_BL172 100110010010111111001101110 Dothiorella_parva_IRAN1579C 100110010010111111001101110 Dothiorella_prunicola_CAP187 100110010000001011001101110 Dothiorella_sarmentorum_CBS115038 100110010010111111001100110 Dothiorella_sarmentorum_IMI63581 100110010010111111001100110 Dothiorella_sempervirentis_IRAN1581C 100110010010101111001101010 Dothiorella_sempervirentis_IRAN1583C 100110010010101111001101010 Dothiorella_symphoricarposicola_MFLUCC130497 1000101101-0111111001101111 Dothiorella_symphoricarposicola_MFLUCC130498 100010011--0111111001101111 Dothiorella_vidmadera_DAR78992 100110010010101111001101110 Dothiorella_vidmadera_IRAN1571C 100110010010101111001101110 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M41635] TITLE Dothiorella_omnivora_ITS_Ef1; LINK TAXA = Taxa1; DIMENSIONS NCHAR=753; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Dothiorella_americana_UCD2252MO CCGAGTTGATTCGAGCTCCGGCTCGACTCTCCCACCCTTTGTGTCACCTACCTCTGTTGCTTTGGCGGGCCCGCGGTTCGGCCTCGTGCCGTCCAG---CACCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACGTCTCAGTCTGAAAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCTCCGTCCT-CAGGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGCGCACGGCGTCGCCCGCCGGACGAACCTTTGAA-TTTTTCTCAAGTAAGAAACTT---TTTCCGCTCTTTCACACC------------------CACCTG----------ACATTTGTCTTGTCGC-TCTGGTGAGGGGC-ATTTTCGATGGTGGGGTTGGCCCGCGCGCTAAACCTCGTTTGCTC-TTCGGCAAAATCTCCACATTTGATTTTT---CTTTGCGCCCGGTGTCA---------CCCCGATGCGCGCGTTCC-TCACC----AAAAACTTTGAGCCACTCAGCGATCAGCTGCTAATGCCTGCTGCAG Dothiorella_americana_UCD2272MO CCGAGTTGATTCGAGCTCCGGCTCGACTCTCCCACCCTTTGTGTCACCTACCTCTGTTGCTTTGGCGGGCCCGCGGTTCGGCCTCGTGCCGTCCAG---CACCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACGTCTCAGTCTGAAAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCTCCGTCCT-CAGGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGCGCACGGCGTCGCCCGCCGGACGAACCTTTGAA-TTTTTCTCAAGTAAGAAACTT---TTTCCGCTCTTTCACACC------------------CACCTG----------ACATTTGTCTTGTCGC-TCTGGTGAGGGGC-ATTTTCGATGGTGGGGTTGGCCCGCGCGCTAAACCTCGTTTGCTC-TTCGGCAAAATCTCCACATTTGATTTTT---CTTTGCGCCCGGTGTCA---------CCCCGATGCGCGCGTTCC-TCACC----AAAAACTTTGAGCCACTCAGCGATCAGCTGCTAATGCCTGCTGCAG Dothiorella_brevicollis_CMW36463 ???????GATTCGAGCTCCGGCTCGACTCTCCCACCCTTTGTGT-ACCTACCTCTGTTGCTTTGGCGGGCCGCC------------------CAGG---CGCCCGCCAGAGGACTTCAAAACTCCAGTCAGTGAACGTCTCAGTCTGAAAAAC-AGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCTCCGTCCTCCCCGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGCGCAGGGCGCCGCCCGCCGGACGAACCTTTGAATCATTTCTCAAGTAAGAAACT----TTTTCCTGCTCCTGCACTGGTGTTGCGTTGTCGCTCCGCCTC----------AGATGTGCCTCGTCACTTTTGGTGAGGGGC-ATTTTTGATGGTGGGGTTGGCCCGCGCGCTAAAC-TCGTTTGCGC-TTCGGCAAATTCTCCACATTTGATTTTTTTTTCTTGCGCCCGGTGTCT---------CACCGAAGCGCATGCCCC-TCACCAACAAAAAACACTGAGCCACTCAACGATCAGCCGCTAATGCCTGCCATAG Dothiorella_californica_CBS141587 CCGAGTTGATTCGAGCTCCGGCTCGACTCTCCCACCCTTTGTGT-ACCTACCTCTGTTGCTTTGGCGGGCCCGCGG-TCGGCCTCGTGCCGTCCAG---CACCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACGTCTCAGTCTGAAAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCTCCGTCCT-CAGGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGTGCATGGCGTCGCCCGCCGGACGAACCTTTGAA-TTTTTCTCAAGTAAGAAACTT---TATC-GCTCCTTCACACC------------------CACCTG----------ACATCTGCCTTGTCGC-CTTGGTGAGGGGC-ATTTTCGATGGTGGGGTTGGCCCGCGCGCTAAACCTCGTTTGCGC-TTCGGCAAAATCTCCACATTTGATTTTT--CCTTTGCGCCCGGTGTCA---------CCCCGATGCGCGCGTCCC-TCACC----AAAAACTCTGAGCCCCTCAGCGATCAGCTGCTAATGCCTGCTGCAG Dothiorella_californica_VICA1 CCGAGTTGATTCGAGCTCCGGCTCGACTCTCCCACCCTTTGTGT-ACCTACCTCTGTTGCTTTGGCGGGCCCGCGG-TCGGCCTCGTGCCGTCCAG---CACCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACGTCTCAGTCTGAAAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCTCCGTCCT-CAGGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGTGCATGGCGTCGCCCGCCGGACGAACCTTTGAA-TTTTTCTCAAGTAAGAAACTT---TATC-GCTCCTTCACACC------------------CACCTG----------ACATCTGCCTTGTCGC-CTTGGTGAGGGGC-ATTTTCGATGGTGGGGTTGGCCCGCGCGCTAAACCTCGTTTGCGC-TTCGGCAAAATCTCCACATTTGATTTTT--CCTTTGCGCCCGGTGTCA---------CCCCGATGCGCGCGTCCC-TCACC----AAAAACTCTGAGCCCCTCAGCGATCAGCTGCTAATGCCTGCTGCAG Dothiorella_iberica_CAA005 CCGAGTTGATTCGAGCTCCGGCTCGACTCTCCCACCCTTTGTGT-ACCTACCTCTGTTGCTTTGGCGGGCCCGCGGTTCGGCCTCGTGCCGTCCAGCACCACCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACGTCTCAGTCTGAAAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCTCCGTCCT-CTGGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGCGCACGGCGTCGCCCGCCGGACGAACCTTTGAA-TTTTTCTCAAGTAAGAAACTT---TTTT-GCTCCTTCACACC------------------CACCTG----------ACATTTGCCTCGTCGC-TCTGGTGAGGGGC-ATTTTCGATGGTGGGGTTGGCCCGCGCGCTAAACCTCGTTTGCGC-TTCGGCAAAATCTCCACATTTGATTTTT--CCTTTGCGCCCGGTGTCA---------CCCCGATGCGCGCGTCCC-TCACC----AAAAACTCTGAGCCACTCAGCGATCAGCTGCTAATGCCTGCTGCAG Dothiorella_iberica_CBS115041 CCGAGTTGATTCGAGCTCCGGCTCGACTCTCCCACCCTTTGTGT-ACCTACCTCTGTTGCTTTGGCGGGCCCGCGGTTCGGCCTCGTGCCGTCCAG---CACCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACGTCTCAGTCTGAAAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCTCCGTCCT-CTGGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGCGCACGGCGTCGCCCGCCGGACGAACCTTTGAA-TTTTTCTCAAGTAAGAAACTT---TTTT-GCTCCTTCACACC------------------CACCTG----------ACATTTGCCTCGTCGC-TCTGGTGAGGGGC-ATTTTCGATGGTGGGGTTGGCCCGCGCGCTAAACCTCGTTTGCGC-TTCGGCAAAATCTCCACATTTGATTTTT--CCTTTGCGCCCGGTGTCA---------CCCCGATGCGCGCGTCCC-TCACC----AAAAACTCTGAGCCACTCAGCGATCAGCTGCTAATGCCTGCTGCAG Dothiorella_iranica_IRAN1587C CCGAGTTGATTCGAGCTCCGGCTCGACTCTCCCACCCTTTGTGT-ACCTACCCCTGTTGCTTTGGCGGGCCCGCG--------------------------CCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACGTCTCCGCCTGAAAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCTCCGTCCT-CGGGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGCGCAGGGCGCCGCCCGCCGGACGAACCTTTGAA-CTTCTCTCAAGTAAAAACCTC---TTTCCCCGTCCTTGCACTGGCGTCGTGGCTGCTGCACACCTG----------ATGTTTGCCTTATCGC-TTTGGTGAGGGGCAATTTTTGATGGTGGGGTTGGCCCG-GCGCTAAACTGCGTTTGTGCTTTCGGCAAAATCTCCACATTTGATTTTTTTGCTCTGCGCCCCGTGTCA---------CACCGATGCGCGCGCCCC-TCGCC----AAAAACTCTGAGCCACTCAGCGATCAGCTGCTAATGCCTGCTACAG Dothiorella_longicollis_CBS122068 CCGAGTTGATTCGAGCTCCGGCTCGACTCTCCCACCCTTTGTGT-ACCTACCTCTGTTGCTTTGGCGGGCTGCC------------------CAGG---CGCCCGCCAGAGGACTTCAAAACTCCAGTCAGTGAACGTCTCAGTCTGAAAAAC-AGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCTCCGTCCTCCCCGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGCGCAGGGCGCCGCCCGCCGGACGAAACCTTTGATCATTTCTCAAGTAAGAAGCT----TTTTCCTACTCCTGTACTGGTGTTGCGTTGTCGCTCCGCCTC----------AGTTTTGCCTCGTCACTTTTGGTGAGGGGC-ATTTTTGATGGTGGGGTTGGCCCGCGCGCTAAAC-TCGTTTGCGC-TTCGGCAAATTCTCCACATTTGATTTTTTTTTCTTGCGCCCGGTGTCT---------CACCGACGCACATGCCCC-TCACCAACAAAAAACACTGAGCCACTCAACGATCAGCCGCTAATGCCTGCCATAG Dothiorella_omnivora_BL52 CCGAGTTGATTCGAGCTCCGGCTCGACTCTCCCACCCTTTGTGT-ACCTACCTCTGTTGCTTTGGCGGGCCCGCGG-TCGGCCTCGTGCCGTCCAG---CACCCGCCAGAGGACCACAAAACTCCAGTCAGTAAACGTCTCAGTCTGAAAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCTCCGTCCT-CAGGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGTGCATGGCGTCGCCCGCCGGACGAACCTTTGAA-TTTTTCTCAAGTAAGAAACTT---TTTTCGCTCCTTCACACC------------------CACCTG----------GCTTTTGCCTTGTCGC-TCTGGTGAGGGGC-ATTTTCGATGGTGGGGTTGGCCCGCGCGCTAAACCTCGTTTGCGC-TTCGGCAAAATCTCCACATTTGATTTTT--CCATTGCGCCCGGTGTCA---------CCCCGATGCGCGCGTCCC-TCACC----AAAAACTCTGAGCCACTCAGCGATCAGCTGCTAATGCCTGCTGCAG Dothiorella_omnivora_DAR78991 CCGAGTTGATTCGAGCTCCGGCTCGACTCTCCCACCCTTTGTGT-ACCTACCTCTGTTGCTTTGGCGGGCCCGCGG-TCGGCCTCGTGCCGTCCAG---CACCCGCCAGAGGACCACAAAACTCCAGTCAGTAAACGTCTCAGTCTGAAAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCTCCGTCCT-CAGGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGTGCATGGCGTCGCCCGCCGGACGAACCTTTGAA-TTTTTCTCAAGTAAGAAACTT---TTTTCGCTCCTTCACACC------------------CACCTG----------GCTTTTGCCTTGTCGC-TCTGGTGAGGGGC-ATTTTCGATGGTGGGGTTGGCCCGCGCGCTAAACCTCGTTTGCGC-TTCGGCAAAATCTCCACATTTGATTTTT--CCATTGCGCCCGGTGTCA---------CCCCGATGCGCGCGTCCC-TCACC----AAAAACTCTGAGCCACTCAGCGATCAGCTGCTAATGCCTGCTGCAG Dothiorella_omnivora_M38 CCGAGTTGATTCGAGCTCCGGCTCGACTCTCCCACCCTTTGTGT-ACCTACCTCTGTTGCTTTGGCGGGCCCGCGG-TCGGCCTCGTGCCGTCCAG---CACCCGCCAGAGGACCACAAAACTCCAGTCAGTAAACGTCTCAGTCTGAAAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCTCCGTCCT-CAGGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGTGCATGGCGTCGCCCGCCGGACGAACCTTTGAA-TTTTTCTCAAGTAAGAAACTT---TTTTCGCTCCTTCACACC------------------CACCTG----------GCTTTTGCCTTGTCGC-TCTGGTGAGGGGC-ATTTTCGATGGTGGGGTTGGCCCGCGCGCTAAACCTCGTTTGCGC-TTCGGCAAAATCTCCACATTTGATTTTT--CCATTGCGCCCGGTGTCA---------CCCCGATGCGCGCGTCCC-TCACC----AAAAACTCTGAGCCACTCAGCGATCAGCTGCTAATGCCTGCTGCAG Dothiorella_omnivora_M7 CCGAGTTGATTCGAGCTCCGGCTCGACTCTCCCACCCTTTGTGT-ACCTACCTCTGTTGCTTTGGCGGGCCCGCGG-TCGGCCTCGTGCCGTCCAG---CACCCGCCAGAGGACCACAAAACTCCAGTCAGTAAACGTCTCAGTCTGAAAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCTCCGTCCT-CAGGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGTGCATGGCGTCGCCCGCCGGACGAACCTTTGAA-TTTTTCTCAAGTAAGAAACTT---TTTTCGCTCCTTCACACC------------------CACCTG----------GCTTTTGCCTTGTCGC-TCTGGTGAGGGGC-ATTTTCGATGGTGGGGTTGGCCCGCGCGCTAAACCTCGTTTGCGC-TTCGGCAAAATCTCCACATTTGATTTTT--CCATTGCGCCCGGTGTCA---------CCCCGATGCGCGCGTCCC-TCACC----AAAAACTCTGAGCCACTCAGCGATCAGCTGCTAATGCCTGCTGCAG Dothiorella_parva_BL172 CCGAGTTGATTCGAGCTCCGGCTCGACTCTCCCACCCTTTGTGT-ACCTACCTCTGTTGCTTTGGCGGGCCCGCGG-TCGGCCTCGTGCCGTCCAG---CACCCGCCAGAGGACCACAAAACTCCAGTCAGTAAACGTCTCAGTCTGAAAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCTCCGTCCT-CAGGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGCGCATGGCGTCGCCCGCCGGACGAACCTTTGAA-TTTTTCTCAAGTAAGAAACTT---TTTT-GCTCCTTCACACC------------------CACCTG----------AGATTTGCCTCGTCGC-TCTGGTGAGGGGC-ATTTTCGATGGTGGGGTTGGCCCGCGCGCTAAACCTCGTTTGCGC-TTCGGCAAAATCTCCACATTTGATTTTT--CCTTTGCGCCCGGTGTCA---------CCCCGATGCGCGCGTCCC-TCACC----AAAAACTCTGAGCCACTCAGCGATCAGCTGCTAATGCCTGCTGCAG Dothiorella_parva_IRAN1579C CCGAGTTGATTCGAGCTCCGGCTCGACTCTCCCACCCTTTGTGT-ACCTACCTCTGTTGCTTTGGCGGGCCCGCGG-TCGGCCTCGTGCCGTCCAG---CACCCGCCAGAGGACCACAAAACTCCAGTCAGTAAACGTCTCAGTCTGAAAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCTCCGTCCT-CAGGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGCGCATGGCGTCGCCCGCCGGACGAACCTTTGAA-TTTTTCTCAAGTAAGAAACTT---TTTT-GCTCCTTCACACC------------------CACCTG----------AGATTTGCCTCGTCGC-TCTGGTGAGGGGC-ATTTTCGATGGTGGGGTTGGCCCGCGCGCTAAACCTCGTTTGCGC-TTCGGCAAAATCTCCACATTTGATTTTT--CCTTTGCGCCCGGTGTCA---------CCCCGATGCGCGCGTCCC-TCACC----AAAAACTCTGAGCCACTCAGCGATCAGCTGCTAATGCCTGCTGCAG Dothiorella_prunicola_CAP187 CCGAGTTGATTCGAGCTTCGGCTCGACTCTCCCACCCTTTGTTT-ACCTACCTCTGTTGCTTTGGCGGGCCCGCGG-TCGGCCTTGTGCCGTCCAG---CACCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACGTCTCAGTCTGAAAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCTCCGTCCT-CAGGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGCGCATGGCGTCGCCCGCCGGACGAACCTTTGAATTTTTTCTCAAGTAAGAAACTTCTGCTCTTGCACCGCTGCGCC------------------CACCTGACCTGACCATACATTTGCCCCGTCGC-TTTGGTGAGGGGC-ATTTTGGATGGTGGGGTTGGCCCGCGCGCTAAACCTCGTTTGCGC-TTCGGCAAAATCTCCACATTTGATTTTT--GCTCTGGGTCCGGTGTCA---------CCCCGATGCGCGCGTCCC-TCACT----AAGAAATCCGAGCCACTCAACGATCAGCTGCTAATGCCTGCTGCAG Dothiorella_sarmentorum_CBS115038 CCGAGTTGATTCGAGCTCCGGCTCGACTCTCCCACCCTTTGTGT-ACCTACCTCTGTTGCTTTGGCGGGCCCGCGG-TCGGCCTCGTGCCGTCCAG---CACCCGCCAGAGGACTACAAAACTCCAGTCAGTGAACGTCTCAGTCTGAAAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCTCCGTCCT-CAGGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGCGCACGGCGTCGCCCGCCGGACGAACCTTTGAA-TTTTTCTCAAGTAAGAAACTT---TTCC-GCTCCTTCACACC------------------CACCTG----------ACATTTGCCTTGTCGC-TCTGGTGAGGGGC-ATTTTCGATGGTGGGGTTGGCCCGCGCGCTAAACCTCGTTTGCGC-TTCGGCAAAATCTCCACATTTGATTTTT--CCTTTGCGCCCGGTGTCACCCCGATGCCCCCGATGCGCGCGTCCC-TCACC----AAAAACTTTGAGCCACTCAGCGATCAGCTGCTAATGCCTGCTGCAG Dothiorella_sarmentorum_IMI63581 CCGAGTTGATTCGAGCTCCGGCTCGACTCTCCCACCCTTTGTGT-ACCTACCTCTGTTGCTTTGGCGGGCCCGCGG-TCGGCCTCGTGCCGTCCAG---CACCCGCCAGAGGACTACAAAACTCCAGTCAGTGAACGTCTCAGTCTGAAAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCTCCGTCCT-CAGGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGCGCACGGCGTCGCCCGCCGGACGAACCTTTGAA-TTTTTCTCAAGTAAGAAACTT---TTCC-GCTCCTTCACACC------------------CACCTG----------ACATTTGCCTTGTCGC-TCTGGTGAGGGGC-ATTTTCGATGGTGGGGTTGGCCCGCGCGCTAAACCTCGTTTGCGC-TTCGGCAAAATCTCCACATTTGATTTTT--CCTTTGCGCCCGGTGTCACCCCGATGCCCCCGATGCGCGCGTCCC-TCACC----AAAAACTTTGAGCCACTCAGCGATCAGCTGCTAATGCCTGCTGCAG Dothiorella_sempervirentis_IRAN1581C CCGAGTTGATTCGAGCTTCGGCTCGACTCTCCCACCCTTTGTGT-ACCTACCTCTGTTGCTTTGGCGGGCCTGCGG-TCGGCCTCGTGCCGTCCAG---CACCCGCCAGAGGACTACAAAACTCCAGTCAGTAAACGTCTCAGTCTGAAAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCTCCGTCCT-CAGGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGCGCATGGCGTCGCCCGCCGGACGAACCTTTGAA-TTTTTCTCAAGTAAGAAACTT---TTTTCGCTCCTTCACACC------------------CACCTG----------ACATTTGCCTTGTCGC-CTTGGTGAGGGGC-ATTTTCGATGGTGGGGTTGGCCCGCGCGCTAAACCTCGTTTGCGC-TTCGGCAAAATCTCCACATTTGATTTTT--CCATTGCGCCCGGTGTCA---------CCCCGATGCGCGCGTCCCTTCACC----AAAAACTCTGAGCCACTCAGCGATCAGCTGCTAATGCCTGCTGCAG Dothiorella_sempervirentis_IRAN1583C CCGAGTTGATTCGAGCTTCGGCTCGACTCTCCCACCCTTTGTGT-ACCTACCTCTGTTGCTTTGGCGGGCCTGCGG-TCGGCCTCGTGCCGTCCAG---CACCCGCCAGAGGACTACAAAACTCCAGTCAGTAAACGTCTCAGTCTGAAAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCTCCGTCCT-CAGGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGCGCATGGCGTCGCCCGCCGGACGAACCTTTGAA-TTTTTCTCAAGTAAGAAACTT---TTTTCGCTCCTTCACACC------------------CACCTG----------ACATTTGCCTTGTCGC-CTTGGTGAGGGGC-ATTTTCGATGGTGGGGTTGGCCCGCGCGCTAAACCTCGTTTGCGC-TTCGGCAAAATCTCCACATTTGATTTTT--CCATTGCGCCCGGTGTCA---------CCCCGATGCGCGCGTCCCTTCACC----AAAAACTCTGAGCCACTCAGCGATCAGCTGCTAATGCCTGCTGCAG Dothiorella_symphoricarposicola_MFLUCC130497 CCGAGTTGATTCGAGCTCCGGCTCGACTCTCCCACCCTTTGTGT-ACCTACCTCTGTTGCTTTGGCGGGCCCGCGGTTCGGCCTCGTGCCGTCCAG---CACCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACGTCTCAGTCTGAAAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGG-TCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCTCCGTCCT-CAGGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGCGCATGGCGTCGCCCGCCGGACGAACCTTTGAA--TTTTCTCAAGTAAGAAACTT---TTTT-ACTCCTTCACACC------------------CACCTG----------ACATTTGCCTTGTCGC-TCTGGTGAGGGGC-ATTTTCGATGGTGGGGTTGGCCCGCGCGCTAAACCTCGTTTGCGC-TTCGGCAAAATCTCCACATTTGATTTTT--CCTTCGCGCCCGGTGTCA---------CCCCGATGCGCGCGTCCC-TCACC----AAAAATTCTGAGCCACTCAGCGATCAGCTGCTAATG-CTGCTGCAG Dothiorella_symphoricarposicola_MFLUCC130498 CCGAGTTGATTCGAGCTCCGGCTCGACTCTCCCACCCTTTGTGT-ACCTACCTCTGTTGCTTTGGCGGGCCCGCGGTTCGGCCTCGTGCCGTCCAG---CACCCGCCAGAGGACCACAAAACTCCAGTCAGTGAACGTCTCAGTCTGAAAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCTCCGTCCT-CAGGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGCGCATGGCGTCGCCCGCCGGACGAACCTTGAA----TTTCTCAAGTAAGAAACTT---TTTT-ACTCCTTCACACC------------------CACCTG----------ACATTTGCCTTGTCGC-TCTGGTGAGGGGC-ATTTTCGATGGTGGGGTTGGCCCGCGCGCTAAACCTCGTTTGCGC-TTCGGCAAAATCTCCACATTTGATTTTT--CCTTCGCGCCCGGTGTCA---------CCCCGATGCGCGCGTCCC-TCACC----AAAAATTCTGAGCCACTCAGCGATCAGCTGCTAATG-CTGCTGCAG Dothiorella_vidmadera_DAR78992 CCGAGTTGATTCGAGCTCCGGCTCGACTCTCCCACCCTTTGTGT-ACCTACCTCTGTTGCTTTGGCGGGCCCGCGG-TCGGCCTCGTGCCGTCCAG---CACCCGCCAGAGGACCACAAAACTCCAGTCAGTAAACGTCTCAGTCTGAAAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCTCCGTCCT-CAGGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGTGCATGGCGTCGCCCGCCGGACGAACCTTTGAA-TTTTTCTCAAGTAAGAAACTT---TTTTCGCTCCTTCACACC------------------CACCTG----------GAATTTGTCTTGTCGC-TCTGGTGAGGGGC-ATTTTCGATGGTGGGGTTGGCCCGCGCGCTAAACCTCGTTTGCGC-TTCGGCAAAATCTCCACATCTGATTTTT--CCATTGCGCCCGGTGTCA---------CCCCGATGCGCGCGTCCC-TCACC----AAAAATTCTGAGCCACTCAGCGATCAGCTGCTAATGCCTGCTGCAG Dothiorella_vidmadera_IRAN1571C CCGAGTTGATTCGAGCTCCGGCTCGACTCTCCCACCCTTTGTGT-ACCTACCTCTGTTGCTTTGGCGGGCCCGCGG-TCGGCCTCGTGCCGTCCAG---CACCCGCCAGAGGACCACAAAACTCCAGTCAGTAAACGTCTCAGTCTGAAAAACAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCTCCGTCCT-CAGGGACGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAAAACACCTCGCTTTGGAGTGCATGGCGTCGCCCGCCGGACGAACCTTTGAA-TTTTTCTCAAGTAAGAAACTT---TTTTCGCTCCTTCACACC------------------CACCTG----------GAATTTGTCTTGTCGC-TCTGGTGAGGGGC-ATTTTCGATGGTGGGGTTGGCCCGCGCGCTAAACCTCGTTTGCGC-TTCGGCAAAATCTCCACATCTGATTTTT--CCATTGCGCCCGGTGTCA---------CCCCGATGCGCGCGTCCC-TCACC----AAAAATTCTGAGCCACTCAGCGATCAGCTGCTAATGCCTGCTGCAG ; END; BEGIN TREES; TITLE 'Dothiorella omnivora MCMC-50majrulecons'; LINK TAXA = Taxa1; TRANSLATE 1 Dothiorella_symphoricarposicola_MFLUCC130497, 2 Dothiorella_symphoricarposicola_MFLUCC130498, 3 Dothiorella_omnivora_DAR78991, 4 Dothiorella_omnivora_BL52, 5 Dothiorella_omnivora_M38, 6 Dothiorella_omnivora_M7, 7 Dothiorella_vidmadera_IRAN1571C, 8 Dothiorella_vidmadera_DAR78992, 9 Dothiorella_parva_IRAN1579C, 10 Dothiorella_parva_BL172, 11 Dothiorella_californica_CBS141587, 12 Dothiorella_californica_VICA1, 13 Dothiorella_americana_UCD2252MO, 14 Dothiorella_americana_UCD2272MO, 15 Dothiorella_sarmentorum_IMI63581, 16 Dothiorella_sarmentorum_CBS115038, 17 Dothiorella_iberica_CBS115041, 18 Dothiorella_iberica_CAA005, 19 Dothiorella_sempervirentis_IRAN1583C, 20 Dothiorella_sempervirentis_IRAN1581C, 21 Dothiorella_prunicola_CAP187, 22 Dothiorella_iranica_IRAN1587C, 23 Dothiorella_longicollis_CBS122068, 24 Dothiorella_brevicollis_CMW36463; TREE 50%_maj_rul = [&R] (23:0.108977,24:0.023184,(((((1:0.025192,2:0.045956)1.00:0.074194,(9:0.010662,10:0.011001)1.00:0.040891,(11:0.010292,12:0.010385)1.00:0.087567,(15:0.00868,16:0.008598)1.00:0.071511,(17:0.010906,18:0.021361)1.00:0.043893)0.97:0.023188,(((3:0.010466,4:0.01042,5:0.010517,6:0.010461)0.88:0.023529,(7:0.010901,8:0.010264)1.00:0.056696)1.00:0.035722,(19:0.01045,20:0.010494)1.00:0.078894)0.99:0.035297,(13:0.010852,14:0.011139)1.00:0.126243)0.79:0.069642,21:0.33746)1.00:0.230105,22:0.354435)1.00:0.637471); END; BEGIN TREES; TITLE Dothiorella_omnivora_MLT; LINK TAXA = Taxa1; TRANSLATE 1 Dothiorella_symphoricarposicola_MFLUCC130497, 2 Dothiorella_symphoricarposicola_MFLUCC130498, 3 Dothiorella_omnivora_DAR78991, 4 Dothiorella_omnivora_BL52, 5 Dothiorella_omnivora_M38, 6 Dothiorella_omnivora_M7, 7 Dothiorella_vidmadera_IRAN1571C, 8 Dothiorella_vidmadera_DAR78992, 9 Dothiorella_parva_IRAN1579C, 10 Dothiorella_parva_BL172, 11 Dothiorella_californica_CBS141587, 12 Dothiorella_californica_VICA1, 13 Dothiorella_americana_UCD2252MO, 14 Dothiorella_americana_UCD2272MO, 15 Dothiorella_sarmentorum_IMI63581, 16 Dothiorella_sarmentorum_CBS115038, 17 Dothiorella_iberica_CBS115041, 18 Dothiorella_iberica_CAA005, 19 Dothiorella_sempervirentis_IRAN1583C, 20 Dothiorella_sempervirentis_IRAN1581C, 21 Dothiorella_prunicola_CAP187, 22 Dothiorella_iranica_IRAN1587C, 23 Dothiorella_longicollis_CBS122068, 24 Dothiorella_brevicollis_CMW36463; TREE 'MLT+bootstrap' = [&R] (((((((1:0.002072308468285357,2:0.005363893818847185)99:0.008670212254880755,((18:0.0017249595817479457,17:4.7678238929381E-7)83:0.003595436700364774,((13:4.7678238929381E-7,14:4.7678238929381E-7)100:0.01286468189569406,(16:4.7678238929381E-7,15:4.7678238929381E-7)98:0.007198684094419947)54:0.0032809180179089264)30:0.0017426970143811147)23:0.0016571497677134615,((9:4.7678238929381E-7,10:4.7678238929381E-7)89:0.0035241765504777896,(((3:4.7678238929381E-7,((6:4.7678238929381E-7,5:4.7678238929381E-7)21:4.7678238929381E-7,4:4.7678238929381E-7)21:4.7678238929381E-7)87:0.0017460630970645827,(7:4.7678238929381E-7,8:4.7678238929381E-7)99:0.006998492886152399)91:0.0034859360627624374,(20:4.7678238929381E-7,19:4.7678238929381E-7)100:0.01050667276810278)62:0.003547262437708088)35:0.0017549583578445604)12:0.0010202210220329492,(12:4.7678238929381E-7,11:4.7678238929381E-7)100:0.011401582733591474)61:0.010303860493867962,21:0.047285369919297104)88:0.02789403503764164,22:0.05572940141187581)100:0.1177065347539209,24:4.7678238929381E-7,23:0.02007296750829158); END;