#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 19, 2024; 19:42 GMT TreeBASE (cc) 1994-2008 Study reference: Nivala O., Faccio G., Arvas M., Permi P., Buchert J., Kruus K., & Mattinen M. 2017. Characterization of sulfhydryl oxidase from Aspergillus tubingensis. BMC Biochemistry, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S21339] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=25; TAXLABELS Ashbya_gossypii_AgosQ75CM8 'Aspergillus fumigatus AfumQ5MBU7_GliT' Aspergillus_niger_AnigA2QUK3 'Aspergillus niger AnigQ68CM8_AnSOX' 'Aspergillus oryzae AoryQ2UA33_AoSOX1' 'Aspergillus oryzae AoryzQ2U4P3_AoSOX2' 'Aspergillus tubingensis Atub184641_AtSOX' Botryotinia_fuckeliana_BfucM7TU30 Candida_albicans_CalbA0A0A6MP51 Candida_albicans_CalbQ5AG89 Chaetomium_globosum_CgloQ2GMR1 'Chromobacterium violaceum CvioA4ZPY8_DepH' Gibberella_zeae_GzeaA0A098DGG0 Kluyveromyces_lactis_KlacQ6CJY3 Kluyveromyces_lactis_KlacQ6HA24 Komagataella_phaffii_KphaF2QQV5 Phaeosphaeria_nodorum_PnodQ0TZA2 Saccharomyces_cerevisiae_ScerP29509 Saccharomyces_cerevisiae_ScerP38816 Schizosaccharomyces_pombe_SpomQ92375 Sclerotinia_sclerotiorum_SsclA7E919 'Streptomyces clavuligerus SclaE2PZ87_HlmI' Trichoderma_reesei_TreeA0A024S075 Trichoderma_reesei_TreeG0R9I0 Yarrowia_lipolytica_YlipQ6C7L4 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M42087] TITLE Sulfhydryl_oxidase_from_Aspergillus_tubingensis_InterPro_family_IPR000103; LINK TAXA = Taxa1; DIMENSIONS NCHAR=252; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . ] Ashbya_gossypii_AgosQ75CM8 KVTIIGSGPAAHTAAIYLARAKPTLYEAAGGQTTEIENFPGFPDGLTGSDL-MERMKAQSV-KFGTEVVTETVAKVDLSAWTEFNEDEEPTTTDAIILATGASAKRL-GLPGEETYWQRGISACAVCDGAVRNKPLAVVGGGDSACEEASFLT-KYGSKVFMLVRKDRRVER-NEKIEVLYNTAPVEARDTRTGEESDLPVNGLFYAIGATQLVAGQVNVPGLFAAGDVQDQAVTSAGSGCMAALDALSELE 'Aspergillus fumigatus AfumQ5MBU7_GliT' DVLIIGAGPAGLSTATGLARQTAVVFDSGVYRTQHMHNVLG-WDHRNPAEL-RAAGRADLTTRYSIQFQNSTIEAIRQVEFEARDNEGHSWYGRKVVLATGVRDIPL-DIEGYSECWANGIYHCLFCDGYEGQETVGVLANPARALHLARMAL-RLSESVTIYTNGNESPVG-ASGLKFEARPIRRFEVIVHLGESESKTEGFLVYNPQVNGPFAKQLSVPGVFAVGDCATAVTPAVSMGSLAAGGLLQAQA Aspergillus_niger_AnigA2QUK3 DVIVVGGGPAGLSVLSSLGRMKTVMFDSGEYRTREMHDVLG-FDGTPPAQF-RGLARQQIS-KYNTSVIDIKIDSITPVEFRAVDANGTQYTSRKVVLGTGLVDVIP-DVPGLREAWGKGIWWCPWCDGYERDEPLGILGGLPDVVGSVMETH-TLYSDIIAFTNGTKQQLE-AWNVGIDNRSIASIEFRVHFTDGSSVVRNTFITNYPQRSTLPEELSLSGVYAVGDCNSNVPHAMFSGKRAGVYVMSREE 'Aspergillus niger AnigQ68CM8_AnSOX' DVIVVGGGPAGLSVLSSLGRMKTVMFDSGEYRTREMHDVLG-FDGTPPAQF-RGLARQQIS-KYNTSVIDIKIDSITPVEFRAVDANGTQYTSRKVVLGTGLVDVIP-DVPGLREAWGKGIWWCPWCDGYERDEPLGILGGLPDVVGSVMETH-TLYSDIIAFTNGTKQQLE-AWNVGIDNRSIASIEFRVHFTDGSSVVPNTFITNYPQRSTLPEELSLSGVYAVGDCNSNVPHAMFSGKRAGVYVMSREE 'Aspergillus oryzae AoryQ2UA33_AoSOX1' EVIVVGGGPAGLTALSGLSRVKTALFDSHEYRTRNMHDVIG-NDGTVPSEF-RGLAREQIS-RYDATFIDKRVNTIETVSFRAQDADGKAYTARKVVLGTGLVDILP-DVPGLQEAWGKGVYWCPWCDGYERDQPFGILGALPDVVGSVLEVY-TLNTDIIAFVNGTEAQLE-AYNVRLENETIASFEFRVHFTNGSSVDRNAFITNYPQRSDLPKQLSLPGVWAIGDCNSNVPHAMFSGKKAAVFAMAKEE 'Aspergillus oryzae AoryzQ2U4P3_AoSOX2' DVIIIGGGPSGLSAASALSRVKSVLFDSGEYRTRHMHDVIG-NDHVVPAEF-RKTAREQIS-FYNTTFIDQKVTKLEKTGFQATVGD-QQYTARKVILGSGVKDDLP-DVPGLQEGFGKGIFWCPWCDGFERNQSMGVLGDISEAYGAVRELHPTLNKDIRIYANGTRKVFQ-AYNVTVNNKPILNITFQIYFADNSSEVRGAFITNYGQRSDLPAQLSVPGVWGVGDANSNVPHGMSSGKSAAVYCLAQEE 'Aspergillus tubingensis Atub184641_AtSOX' DVIVVGGGPAGLSVLSSLGRMRTVMFDSGEYRTREMHDVLG-FDGTPPAQF-RGLARQQIS-KYNTSVIDIKIDTITPIEFRAVDANGTEYTSRKVVLGTGLVDVIP-DVPGLREAWGKGIWWCPWCDGYERDEPLGILGSLTDVVGSVMETH-TLYSDIIAFTNGTKEQLE-AWNIGIDNRSIASIEFRVHFTDGSSVIRNTFITNYPQRSTLPEELSLSGVYAVGDCNSNVPHAMFSGKRAGVYVMSREE Botryotinia_fuckeliana_BfucM7TU30 TVLILGASYVGLTVAHKLLKTKIVLVSPTTHLMASVRAIV--PGQFGDEKM-FAEIAPGFS-KYPFEFLLGTATSMDAVAVTIKTTADSVQSYDSLVIATGSHTIGE--VPWKGAPSGYEQTKELLHRFRENAKIIVVGGAGPTGVETVGELGFEFGKTVILITSSDQKELE-KMHVNVRLRTRINSTTELSLSNGEKLLCDLYLPTLGNSQFIPRDLGAEDVWAAGDIIDAPMIAVALGRSKATGRIVWFV Candida_albicans_CalbA0A0A6MP51 QIVIIGGSYAGILALKTLLKSNITLISPNDSGAAAPRLLIE-PESIDKTIFPIKPTIEKLT-SGTAKFLQGVVTKVDLTNVFVDNES--EIDYDNLIIASGARAKSP--AFKLTNNNDQNYTIKAILELGDAANNIAVIGGGSTGVETSAEIAFKYSDKVVLYTGASTGKLN-QLGIEIVNGERV---KTIEFADGSTKSFNLIIETSGNTDFLPKKVDHHNVICLGDVVAGITTFIPIGRNGGVGLLIWFA Candida_albicans_CalbQ5AG89 KVTIIGSGPAAHTAAIYLARAKPTLYEAAGGQTTDIENFPGFPNGIGGSEL-MEKMKEQSQ-RFGTEIITETISKVDFSKWTEWNEDAEPITTDAVIIATGASAKRM-HLPGEDTYWQQGISACAVCDGAVRNNPLAVIGGGDSACEEAIFLT-KYASKVFLLVRRDKRVTN-NEKIEVLWNTEALEAVNNKTKEEKDLQVNGLFYAIGATKIFADQLSIEGVFAAGDVQDQAITSAGSGCMAALECISEQE Chaetomium_globosum_CgloQ2GMR1 DALIIGGGPAGLSAALALARVTSILFDSGDYRTQAMHSFLS-RDGAHPDEF-RHIARQQIQDVYSASFMKSKVVTVAKTEFEVTDDSRQTFRGRKLILATGTEDILPTDLEGYKDNWPAHIYQCPFCDGYESTSPIGILTPNPTYAHLAVMLR-SLNKSITIFTNGPANLLSTTSDIQTDTRPITRLLITLEFATGDPTTLGMLFHRPARGHALIAQLSLRGCFVAGDTHQQVVVAAADGVRAAGGVLCEEE 'Chromobacterium violaceum CvioA4ZPY8_DepH' DVIVIGGSHAGQSAALQIARARVLVIDAGARRASQSHGVIG-QDGRSPDAI-AADGKAQLL-AYPAQWREDSVVRAERSDYTLICASGQHYRACQLVLAFGVVDELP-ELEGLEERWGESVFHCPYCHGYEDGGRIGVLGSGPLSYLSAMLMP-EWGQ-TVFLTDASREALA-RRGVEIVRDRIARIVATVELADGRRIAFDGLFTMNRLSSPVAEQLSTPGVFACGDITHTVALAIGNGALAGIAALV--- Gibberella_zeae_GzeaA0A098DGG0 DVLIIGAGPAGLSAALSLGRVSAAIFYSDGDNCPDMH---A-DDGRRTKSV-QTDMIAELETKFKVLFTNTAAKSVRESGFEVVDKAGRYWKGRKVILAMGSRESLP-EIPGYQELWGTKIFDCFQYHGVEVTCAAALITSIDSAILSAHLAR-QYTPDITLLVNGV------NRGFKINSKAIKHFSVTVEFADGTKATYGFIAHKPRVKCSFTRELSIRGVFAAGSCATDEAVEISSGIVVGMGVIAEDD Kluyveromyces_lactis_KlacQ6CJY3 DLVIIGGSYAGMSAALQLVRAKVVIIDEGIRRAKESHGFLG-SDGASPNEI-AATARGQLL-KYPLQWIDGRAISVEGTKFVITTADKQEYRASRILLATGIQDCLS-DIEGLEERWGKSVFHCPYCHGYENQGNIAVIATSPMSIHQGLLLP-EWGT-ITFYTNGTLNALE-SKSMNVVHGIVQKIEADVILEDGSKESFTGIFVSTTTADELINHLSKPGVYACGDVGVTVALAVGDGTLAGFNILL--- Kluyveromyces_lactis_KlacQ6HA24 KVTIIGSGPAAHTAAIYLARAKPTLYEAAGGQTTEIENFPGFPDGLTGSEL-MDRMKAQSI-KFGTDVITETVSKVDLSSWTEFNEDQEPETTDAIILSTGASAKRL-HLPGEETYWQQGISACAVCDGAVRNKPLAVIGGGDSACEEAQFLT-KYGSKVYMLVRKDRRAEQ-NEKIEILYNHVTLEAKNVKTNEEYDLPVNGLFYAIGATNIVAGQVNVPGVFAAGDVQDQAITSAGSGCMAALDAITELE Komagataella_phaffii_KphaF2QQV5 QIVIVGSGFYGIALANRLQKLNITLIANSERTPSTIRLPFN-KDASRVEVL-VKDVLN-------VELIVDQVLNIDEERIELKS--NHSIAYDRLVIATGAEWDDP-ICPDKFLQYGIETYAN---ELSAKARNIVIVGGGIVGVEVAGEIAYHCPKKVTLIHSRDQSQLL-NLGVKLILGKKA---DSVSI-DGSQIPCDHLIKATGRANPPPSSISTPKIYAIGDVTNKANVGISVGPEGGAGQLIVKS Phaeosphaeria_nodorum_PnodQ0TZA2 SKVVSDSGPAGHTAAIYAARAKPVMYEAAGGQTDEVENFPGFLK-IGGGKL-MEHMREQSE-ACGTEIISQTVAKVDLKSWLHPMGDEEEHTADSLIIATGAKARRL-DLPGEEQYWGFGVSACAVCDGSLRDQPLVVIGGGDSAVEEALYLT-KKAKKVTVLVRRDRRLTT-HPKIEILYNTSASQIKNNVTKEEQTVPARGLFYAVGATEIFKGQLSVEGVFAAGDVQDQAITSAGSGCVAALEALAEHD Saccharomyces_cerevisiae_ScerP29509 KVTIIGSGPAAHTAAIYLARAKPILYEAAGGQTTEIENFPGFPDGLTGSEL-MDRMREQST-KFGTEIITETVSKVDLSSWTEFNEDAEPVTTDAIILATGASAKRM-HLPGEETYWQKGISACAVCDGAVRNKPLAVIGGGDSACEEAQFLT-KYGSKVFMLVRKDKRAEK-NEKIEILYNTVALEAKNTKKNEETDLPVSGLFYAIGATKIVAGQVSVPGFFAAGDVQDQAITSAGSGCMAALDALTSLE Saccharomyces_cerevisiae_ScerP38816 KVTIIGSGPAAHTAAIYLARAKPTLYEAAGGQTTDIENFPGFPESLSGSEL-MERMRKQSA-KFGTNIITETVSKVDLSSWTEFNEDAEPVTTDAIILATGASAKRM-HLPGEETYWQQGISACAVCDGAVRNKPLAVIGGGDSACEEAEFLT-KYASKVYILVRKDRRIEK-NPNIIVLFNTVALEAKNTKSNVENDLEVNGLFYAIGATDIVKGQVSVPGFFAAGDVQDQAVTSAGSGCIAALDALSAQE Schizosaccharomyces_pombe_SpomQ92375 KVVIIGSGPAGHTAAIYLARGKPVMYEAAGGQTTDVENFPGFPDGINGTTL-TENFRAQSL-RFGTEIITETVSKLDLSSWLEGAEEEEPHTADSVILATGASARRL-HITGEDTYWQAGISACAVCDGAVRNKPLAVVGGGDSAAEEAQFLT-KYGSKVYVLVRRDKRLLA-NPKVEVLWNTVAEEAKNTNTNEVSDLQVNGLFYAIGATKLVAEQISIPGFFAAGDVQDQAITSAGSGCQAALLALEELE Sclerotinia_sclerotiorum_SsclA7E919 EIVILGGNFAGVNAVHYLLRQHITLVTPNTSFIASPRALIN-STLIPQEKI-FKPLSEAFA-QYDFELIQGTASDLDPAQVTVSNEQTRQIHYDSLIISTGTTSKSP--LWGLHGN--ESITKKALDSLNTNAKTVLIAGGGAVGVETAGEIATNYPNCVTLLSGANQDYLE-NMHVEVIHNVRVASTATLQLSDGSSREVDIYIDATGNSQFLPKTWDVKGIYALGDIVAKETIFVPIGSAGGVGQMVKIG 'Streptomyces clavuligerus SclaE2PZ87_HlmI' DVVVIGAGAGGLNAALVLARARVVLVDSGAPRSAHMQGFLS-RDGMAPSAL-LETGRAEVS-GYGAEFIRGEVDDVEREGFTVRLVGGVALSTRRVVVATGLRDELP-DIPGVRERWGKDLLHCPYCHGYESDQPLGVLGTSPGAVRHALLLR-QWSDDVVLFRHGLRRALS-ARQVPVIEGTVKRLVRGVELAEDSGVARSTVFVVPRPRDGLLTALSVPGVWAVGNVVDLVVSSAGMGSAAAFALLVDED Trichoderma_reesei_TreeA0A024S075 DALVIGSGPAGLSSALALARVSSIIFDSGEFRAKEMHTFLS-RDGIPPEKF-RSIARQQIEDKYSVTFVPAKIVAVSNTEFQAVDNLNNTYLGRKLVLATGVEDILPTDIEGYKENWPQHM-QCPFCDGFERNYPVGLLSPNPSYSHFALMAL-AFNKDFTIYSNGPKKVM--AAGIKLDERPILRLVISIEFESGNPVTLGMLFHRPPRGQELIDQLSVYGCFAAGDTQEQALMASSNGVRVGASILADEE Trichoderma_reesei_TreeG0R9I0 DALVIGSGPAGLSSALALARVSSIIFDSGEFRAKEMHTFLS-RDGIPPEKF-RSIARQQIEDKYSVTFVPAKIVAVSNTEFQAVDNLNNTYLGRKLVLATGVEDILPTDIEGYKENWPQHM-QCPFCDGFERNYPVGLLSPNPSYSHFALMAL-AFNKDFTIYSNGPKKVM--AAGIKLDERPILRLVISIEFESGNPVTLGMLFHRPPRGQELIDQLSVYGCFAAGDTQEQALMASSNGVRVGASILADEE Yarrowia_lipolytica_YlipQ6C7L4 PVVIIGSGPAAHTAAIYLSRAKPTLYEAAGGQTTEIENFPGFPDGIMGSQL-MEDMRKQSI-RFGTEIITETVSKVDLSQWTEFNEDEEPHTADAIILATGASAKRL-SLPGEDQYWQQGISACAVCDGAVRNKPLAVVGGGDSAAEEALFLT-KYGSKVYVIVRKDKRLAS-HPKVEILFNHVSIEAENTLTGEKRDLEVNGLFYAIGATSIVKGQVSVKGVFAAGDVQDQAITSAGTGCMAALDCLAEEE ; END; BEGIN TREES; TITLE Sulfhydryl_oxidase_from_Aspergillus_tubingensis_InterPro_family_IPR000103; LINK TAXA = Taxa1; TRANSLATE 1 'Aspergillus tubingensis Atub184641_AtSOX', 2 Aspergillus_niger_AnigA2QUK3, 3 'Aspergillus niger AnigQ68CM8_AnSOX', 4 'Aspergillus fumigatus AfumQ5MBU7_GliT', 5 'Aspergillus oryzae AoryzQ2U4P3_AoSOX2', 6 'Aspergillus oryzae AoryQ2UA33_AoSOX1', 7 Phaeosphaeria_nodorum_PnodQ0TZA2, 8 Botryotinia_fuckeliana_BfucM7TU30, 9 Sclerotinia_sclerotiorum_SsclA7E919, 10 Trichoderma_reesei_TreeA0A024S075, 11 Trichoderma_reesei_TreeG0R9I0, 12 Gibberella_zeae_GzeaA0A098DGG0, 13 Chaetomium_globosum_CgloQ2GMR1, 14 Candida_albicans_CalbA0A0A6MP51, 15 Candida_albicans_CalbQ5AG89, 16 Saccharomyces_cerevisiae_ScerP29509, 17 Saccharomyces_cerevisiae_ScerP38816, 18 Yarrowia_lipolytica_YlipQ6C7L4, 19 Kluyveromyces_lactis_KlacQ6HA24, 20 Kluyveromyces_lactis_KlacQ6CJY3, 21 Ashbya_gossypii_AgosQ75CM8, 22 Komagataella_phaffii_KphaF2QQV5, 23 Schizosaccharomyces_pombe_SpomQ92375, 24 'Chromobacterium violaceum CvioA4ZPY8_DepH', 25 'Streptomyces clavuligerus SclaE2PZ87_HlmI'; TREE Fig._7 = [&R] (16:0.01742,((19:0.05097,21:0.11017)0.923:0.03692,(17:0.10088,(15:0.14875,(18:0.13557,(23:0.15677,(7:0.32113,((22:0.88569,(14:0.62469,(9:0.39227,8:1.04858)0.483:0.25642)0.928:0.31244)0.999:0.97007,(((5:0.26634,(6:0.14876,(1:0.03162,(2:5.5E-4,3:0.00393)0.716:0.00439)0.999:0.21467)0.972:0.18519)0.999:0.42715,(((10:0.0,11:0.0):0.31426,13:0.26035)0.996:0.36973,(4:0.5156,12:0.9046)0.949:0.2442)0.873:0.14741)0.973:0.27767,(25:0.63608,(20:0.43758,24:0.50524)0.996:0.34414)0.692:0.08101)0.959:0.56283)0.997:0.73787)0.827:0.0908)0.392:0.04763)0.972:0.06515)0.143:0.03768)0.443:0.02913):0.01742); END;