#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 19, 2024; 18:46 GMT TreeBASE (cc) 1994-2008 Study reference: Santos J., & Phillips A. 2009. Resolving the complex of Diaporthe (Phomopsis) species occurring on Foeniculum vulgare in Portugal. Fungal Diversity, 34: 111-125. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S2201] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=38; TAXLABELS Diaporthe_ambigua_AY485744 Diaporthe_ambigua_DQ286268 Diaporthe_ambigua_Di_C002_9 Diaporthe_ambigua_Di_C003_10 Diaporthe_angelicae_AY196778 Diaporthe_angelicae_AY196779 Diaporthe_angelicae_Ph_C032_1 Diaporthe_angelicae_Ph_C068_2 Diaporthe_angelicae_Ph_C094_2 Diaporthe_angelicae_Ph_C098_2 Diaporthe_angelicae_Ph_C118_1 Diaporthe_angelicae_Ph_C121_1 Diaporthe_angelicae_Ph_C133_1 Diaporthe_angelicae_Ph_C135_1 Diaporthe_angelicae_Ph_C142_2 Diaporthe_angelicae_Ph_C150_1 Diaporthe_angelicae_Ph_C159_1 Diaporthe_angelicae_Ph_C165_2 Diaporthe_angelicae_Ph_C166_1 Diaporthe_angelicae_Ph_C168_1 Diaporthe_helianthi_AY485748 Diaporthe_helianthi_AY485749 Diaporthe_lusitanicae_Di_C001_5 Diaporthe_lusitanicae_Ph_C086_2 Diaporthe_lusitanicae_Ph_C170_1 Diaporthe_neotheicola_Di_C004_5 Diaporthe_sp_EU311605 Diaporthe_sp_EU311606 Leucostoma_persoonii_DQ996042 Phomopsis_sp_AB302247 Phomopsis_sp_AF102999 Phomopsis_sp_DQ286285 Phomopsis_sp_EU002917 Phomopsis_sp_EU512922 Phomopsis_sp7_AY485742 Phomopsis_theicola_AY485723 Phomopsis_theicola_DQ286286 Valsa_ceratosperma_DQ241769 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3603] TITLE ITS; LINK TAXA = Taxa1; DIMENSIONS NCHAR=652; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Diaporthe_ambigua_AY485744 --------------------------------------------AGGGATCATTGCTGGAACGCGCCTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCTAT--CGTTGCCTCGGCGAAGGCCGGCCTCCCC-------ACCGAGGCCC---CTTGGGA--AC--------AAGGAGCA------GCCCGCCGGCGGCCAACCAAACTCTTGTTTCT-TAGTG-AATCTCTGAGTAAAAAAAACATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGCTTCC------------GAG-AGGGAGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTATATC-TCGCTCCGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGT------------------------------------------ Diaporthe_ambigua_DQ286268 ----------------------------------------------GGATCATTGCTGGAACGCGCCTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCTAT--CGTTGCCTCGGCGAAGGCCGGCCTCCCC-------ACCGAGGCCC---CTTGGGA--AC--------AAGGAGCA------GCCCGCCGGCGGCCAACCAAACTCTTGTTTCT-TAGTG-AATCTCTGAGTAAAAAAAACATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGCTTCC------------GAG-AGGGAGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTATATC-TCGCTCCGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATA----------------------------------- Diaporthe_ambigua_Di_C002_9 --------------------------------------------AGGGATCATTGCTGGAACGCGCCTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCTAT--CGTTGCCTCGGCGAAGGCCGGCCTCCCC-------ACCGAGGCCC---CTTGGGA--AC--------AAGGAGCA------GCCCGCCGGCGGCCAACCAAACTCTTGTTTCT-TAGTG-AATCTCTGAGTAAAAAAAACATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGCTTCC------------GAG-AGGGAGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTATATC-TCGCTCCGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAA--------------------- Diaporthe_ambigua_Di_C003_10 --------------------------------------------AGGGATCATTGCTGGAACGCGCCTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCTAT--CGTTGCCTCGGCGAAGGCCGGCCTCCCC-------ACCGAGGCCC---CTTGGGA--AC--------AAGGAGCA------GCCCGCCGGCGGCCAACCAAACTCTTGTTTCT-TAGTG-AATCTCTGAGTAAAAAAAACATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGTACTGCTTCC------------GAG-AGGGAGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTATATC-TCGCTCCGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAA--------------------- Diaporthe_angelicae_AY196778 ----------------------------------GAACCAGCGGAGGGATCATTGCTGGAACGCGCCTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCTATACTGTTGCCTCGGCGCAGGCCGGCCTTTCTC-----GGTAAAGGCCC---CCTGGAG--AC--------AGGGAGCA------GCCCGCCGGCGGCCAGCCAAACTCT-GTTTCTATAGTG-GATCTCTGAGTAAAAAA--CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGCCTGT------------GAA---AGGGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGCAGTAGTTACATC-TCGCTCTGGGAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCC-------------------------------- Diaporthe_angelicae_AY196779 ----------------------------------GAACCAGCGGAGGGATCATTGCTGGAACGCGCCTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCTATACTGTTGCCTCGGCGCAGGCCGGCCTTTCTC-----GGTAAAGGCCC---CCTGGAG--AC--------AGGGAGCA------GCCCGCCGGCGGCCAGCCAAACTCT-GTTTCTATAGTG-GATCTCTGAGTAAAAAA--CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGCCTGT------------GAA---AGGGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTACATC-TCGCTCTGGGAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCC-------------------------------- Diaporthe_angelicae_Ph_C032_1 --------------------------------------------AGGGATCATTGCTGGAACGCGCCTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCTATACTGTTGCCTCGGCGCAGGCCGGCCTTTCTC-----GGTAAAGGCCC---CCTGGAG--AC--------AGGGAGCA------GCCCGCCGGCGGCCAGCCAAACTCT-GTTTCTATAGTG-GATCTCTGAGTAAAAAA--CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGCCTGT------------GAA---AGGGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTACATC-TCGCTCTGGGAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAA--------------------- Diaporthe_angelicae_Ph_C068_2 --------------------------------------------AGGGATCATTGCTGGAACGCGCCTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCTATACTGTTGCCTCGGCGCAGGCCGGCCTTTCTC-----GGTAAAGGCCC---CCTGGAG--AC--------AGGGAGCA------GCCCGCCGGCGGCCAGCCAAACTCT-GTTTCTATAGTG-GATCTCTGAGTAAAAAA--CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGCCTGT------------GAA---AGGGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTACATC-TCGCTCTGGGAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAA--------------------- Diaporthe_angelicae_Ph_C094_2 --------------------------------------------AGGGATCATTGCTGGAACGCGCCTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCTATACTGTTGCCTCGGCGCAGGCCGGCCTTTCTC-----GGTAAAGGCCC---CCTGGAG--AC--------AGGGAGCA------GCCCGCCGGCGGCCAGCCAAACTCT-GTTTCTATAGTG-GATCTCTGAGTAAAAAA--CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGCCTGT------------GAA---AGGGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTACATC-TCGCTCTGGGAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAA--------------------- Diaporthe_angelicae_Ph_C098_2 --------------------------------------------AGGGATCATTGCTGGAACGCGCCTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCTATACTGTTGCCTCGGCGCAGGCCGGCCTTTCTC-----GGTAAAGGCCC---CCTGGAG--AC--------AGGGAGCA------GCCCGCCGGCGGCCAGCCAAACTCT-GTTTCTATAGTG-GATCTCTGAGTAAAAAA--CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGCCTGT------------GAA---AGGGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTACATC-TCGCTCTGGGAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAA--------------------- Diaporthe_angelicae_Ph_C118_1 --------------------------------------------AGGGATCATTGCTGGAACGCGCCTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCTATACTGTTGCCTCGGCGCAGGCCGGCCTTTCTC-----GGTAAAGGCCC---CCTGGAG--AC--------AGGGAGCA------GCCCGCCGGCGGCCAGCCAAACTCT-GTTTCTATAGTG-GATCTCTGAGTAAAAAA--CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGCCTGT------------GAA---AGGGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTACATC-TCGCTCTGGGAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAA--------------------- Diaporthe_angelicae_Ph_C121_1 --------------------------------------------AGGGATCATTGCTGGAACGCGCCTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCTATACTGTTGCCTCGGCGCAGGCCGGCCTTTCTC-----GGTAAAGGCCC---CCTGGAG--AC--------AGGGAGCA------GCCCGCCGGCGGCCAGCCAAACTCT-GTTTCTATAGTG-GATCTCTGAGTAAAAAA--CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGCCTGT------------GAA---AGGGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTACATC-TCGCTCTGGGAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAA--------------------- Diaporthe_angelicae_Ph_C133_1 --------------------------------------------AGGGATCATTGCTGGAACGCGCCTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCTATACTGTTGCCTCGGCGCAGGCCGGCCTTTCTC-----GGTAAAGGCCC---CCTGGAG--AC--------AGGGAGCA------GCCCGCCGGCGGCCAGCCAAACTCT-GTTTCTATAGTG-GATCTCTGAGTAAAAAA--CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGCCTGT------------GAA---AGGGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTACATC-TCGCTCTGGGAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAA--------------------- Diaporthe_angelicae_Ph_C135_1 --------------------------------------------AGGGATCATTGCTGGAACGCGCCTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCTATACTGTTGCCTCGGCGCAGGCCGGCCTTTCTC-----GGTAAAGGCCC---CCTGGAG--AC--------AGGGAGCA------GCCCGCCGGCGGCCAGCCAAACTCT-GTTTCTATAGTG-GATCTCTGAGTAAAAAA--CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGCCTGT------------GAA---AGGGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTACATC-TCGCTCTGGGAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAA--------------------- Diaporthe_angelicae_Ph_C142_2 --------------------------------------------AGGGATCATTGCTGGAACGCGCCTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCTATACTGTTGCCTCGGCGCAGGCCGGCCTTTCTC-----GGTAAAGGCCC---CCTGGAG--AC--------AGGGAGCA------GCCCGCCGGCGGCCAGCCAAACTCT-GTTTCTATAGTG-GATCTCTGAGTAAAAAA--CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGCCTGT------------GAA---AGGGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTACATC-TCGCTCTGGGAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAA--------------------- Diaporthe_angelicae_Ph_C150_1 --------------------------------------------AGGGATCATTGCTGGAACGCGCCTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCTATACTGTTGCCTCGGCGCAGGCCGGCCTTTCTC-----GGTAAAGGCCC---CCTGGAG--AC--------AGGGAGCA------GCCCGCCGGCGGCCAGCCAAACTCT-GTTTCTATAGTG-GATCTCTGAGTAAAAAA--CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGCCTGT------------GAA---AGGGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTACATC-TCGCTCTGGGAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAA--------------------- Diaporthe_angelicae_Ph_C159_1 --------------------------------------------AGGGATCATTGCTGGAACGCGCCTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCTATACTGTTGCCTCGGCGCAGGCCGGCCTTTCTC-----GGTAAAGGCCC---CCTGGAG--AC--------AGGGAGCA------GCCCGCCGGCGGCCAGCCAAACTCT-GTTTCTATAGTG-GATCTCTGAGTAAAAAA--CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGCCTGT------------GAA---AGGGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTACATC-TCGCTCTGGGAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAA--------------------- Diaporthe_angelicae_Ph_C165_2 --------------------------------------------AGGGATCATTGCTGGAACGCGCCTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCTATACTGTTGCCTCGGCGCAGGCCGGCCTTTCTC-----GGTAAAGGCCC---CCTGGAG--AC--------AGGGAGCA------GCCCGCCGGCGGCCAGCCAAACTCT-GTTTCTATAGTG-GATCTCTGAGTAAAAAA--CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGCCTGT------------GAA---AGGGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTACATC-TCGCTCTGGGAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAA--------------------- Diaporthe_angelicae_Ph_C166_1 --------------------------------------------AGGGATCATTGCTGGAACGCGCCTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCTATACTGTTGCCTCGGCGCAGGCCGGCCTTTCTC-----GGTAAAGGCCC---CCTGGAG--AC--------AGGGAGCA------GCCCGCCGGCGGCCAGCCAAACTCT-GTTTCTATAGTG-GATCTCTGAGTAAAAAA--CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGCCTGT------------GAA---AGGGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTACATC-TCGCTCTGGGAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAA--------------------- Diaporthe_angelicae_Ph_C168_1 --------------------------------------------AGGGATCATTGCTGGAACGCGCCTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCTATACTGTTGCCTCGGCGCAGGCCGGCCTTTCTC-----GGTAAAGGCCC---CCTGGAG--AC--------AGGGAGCA------GCCCGCCGGCGGCCAGCCAAACTCT-GTTTCTATAGTG-GATCTCTGAGTAAAAAA--CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGCCTGT------------GAA---AGGGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTACATC-TCGCTCTGGGAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAA--------------------- Diaporthe_helianthi_AY485748 --------------------------------------------AGGGATCATTGCTGGAACGCGCTTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCCAC--TGTTGCCTCGGCGCAGGCCGGCCTCTTC-------ACTGAGGCCC---CCTGGAA--AC--------AGGGAGCA------GCCCGCCGGTGGCCAACTAAACTCT-GTTTCTATAGTG-AATCTCTGAGTAAAAAA--CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGCCTGT------------AAA---AGGGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTATATC-TCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGT------------------------------------------ Diaporthe_helianthi_AY485749 --------------------------------------------AGGGATCATTGCTGGAACGCGCTTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCCAC--TGTTGCCTCGGCGCAGGCCGGCCTCTTC-------ACTGAGGCCC---CCTGGAA--AC--------AGGGAGCA------GCCCGCCGGTGGCCAACTAAACTCT-GTTTCTATAGTG-AATCTCTGAGTAAAAAA--CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGCCTGT------------AAA---AGGGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTATATC-TCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGT------------------------------------------ Diaporthe_lusitanicae_Di_C001_5 --------------------------------------------AGGGATCATTGCTGGAACGCGCTTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCCAC--TGTTGCCTCGGCGCAGGCCGGCCTCTTC-------ACTGAGGCCC---CCCCGAA--AG--------GGGGAGCA------GCCCGCCGGCGGCCAACTAAACTCT-GTTTCTATAGTG-AATCTCTGAGTAAAAAAA-CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGCCTGT------------AAA---AGGGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTACATC-TCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAA--------------------- Diaporthe_lusitanicae_Ph_C086_2 --------------------------------------------AGGGATCATTGCTGGAACGCGCTTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCCAC--TGTTGCCTCGGCGCAGGCCGGCCTCTTC-------ACTGAGGCCC---CCCCGAA--AG--------GGGGAGCA------GCCCGCCGGCGGCCAACTAAACTCT-GTTTCTATAGTG-AATCTCTGAGTAAAAAAA-CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGCCTGT------------AAA---AGGGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTACATC-TCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAA--------------------- Diaporthe_lusitanicae_Ph_C170_1 --------------------------------------------AGGGATCATTGCTGGAACGCGCTTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCCAC--TGTTGCCTCGGCGCAGGCCGGCCTCTTC-------ACTGAGGCCC---CCCCGAA--AG--------GGGGAGCA------GCCCGCCGGCGGCCAACTAAACTCT-GTTTCTATAGTG-AATCTCTGAGTAAAAAAA-CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGCCTGT------------AAA---AGGGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTACATC-TCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAA--------------------- Diaporthe_neotheicola_Di_C004_5 --------------------------------------------AGGGATCATTGCTGGAACGCGCCCCT-GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCT-TACTGTTGCCTCGGCGCAGGCCGTCCCCTG--------ATGGGGTCCC---TCTGGAGACA---------GAGGAGCA------GCCGGCCGGTGGCCAAATTAACTCT-GTTTTTACACTG-AAACTCTGAGTACAAAA--CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGTTGGGGCACTGCTCTC------------TGAC-GAGAGCAGGCCCTGAAATATAGTGGCGAGCTCGCCAGGACTCCGAGCGTAGTAGTTAAACCCTCGCTTTGGAAGGCC-TGGCGGTGCCCTGCCGTTAAACCCC-AACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAA--------------------- Diaporthe_sp_EU311605 -------------------------------------------GAGGGATCATTGCTGGAACGCGCCTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCCATACTGTTGCCTCGGCGCAGGCCGGCCTTTTTC-----GACAAAGGCCC---CCTGGAG--AC--------AGGGAGCA------GCCCGCCGGCGGCCAACCAAACTCT-GTTTCTATAGTG-AATCTCTGAGTAAAAAA--CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGCCTGT------------GAA---AGGGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTACATC-TCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAA--------------------- Diaporthe_sp_EU311606 -------------------------------------------GAGGGATCATTGCTGGAACGCGCCTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCCATACTGTTGCCTCGGCGCAGGCCGGCCTTTTTC-----GACAAAGGCCC---CCTGGAG--AC--------AGGGAGCA------GCCCGCCGGCGGCCAACCAAACTCT-GTTTCTATAGTG-AATCTCTGAGTAAAAAA--CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGCCTGT------------GAA---AGGGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTACATC-TCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAA--------------------- Leucostoma_persoonii_DQ996042 --------------------------------------------AGGGATCATTGCTGGAA-GCGCCGCAAGGCGCAACCCAGAAACCCTTTGTGAACTTATACCTATATCGTTGCCTCGGCGCTGGCTGCCTCTCCC--TCGTGGAGGGGGCCCGCCTCTGGTCGTAAGAAAGCCAGGGGAGGACAGCAGGCCCGCCGGTGGCCTACCAAACTCTTGTATTGATCGAGTAAAATCTGAGTACATTT---CTAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCCGGTATTCCAGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTAGCTTGGTGTTGGGGCATTGCCTGA--CTGTTTT--AACAGGA-GGGCAAGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACTCCGAGCGCAGTAGTCAAACCCTCGCTCTGGATCGTACTGGCGCGGCCCTGCCGTAAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAA--------------------- Phomopsis_sp_AB302247 -------------------------TCCGTAGGTGAACCTGCGGAGGGATCATTGCTGGAACGCGCTTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCTAT--TGTTGCCTCGGCGTAGGCCGGCCTCTTC-------ACTGAGGCCC---CCTGGAA--AC--------AGGGAGCA------GCCCGCCGGCGGCCAACCAAACTCTTGTTTCTACAGTG-AATCTCTGAGTAAAAAA--CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGCTTTC------------GTCCAGAAAGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTATATC-TCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA- Phomopsis_sp_AF102999 TGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTGCTGGAACGCGCTTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCTAT--TGTTGCCTCGGCGTAGGCCGGCCTCTTC-------ACTGAGGCCC---CCTGGAA--AC--------AGGGAGCA------GCCCGCCGGCGGCCAACCAAACTCTTGTTTCTACAGTG-AATCTCTGAGTAAAAAA--CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGCTTTC------------GTCCAGAAAGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTATATC-TCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAA Phomopsis_sp_DQ286285 -------------------------------------------------TCATTGCTGGAACGCGCTTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCCAC--TGTTGCCTCGGCGCAGGCCGGCCTCTTC-------ACTGAGGCCC---CCTGGAA--AC--------AGGGAGCA------GCCCGCCGGTGGCCAACTAAACTCT-GTTTCTATAGTG-AATCTCTGAGTAAAAAA--CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGCCTGT------------AAA---AGGGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTATATC-TCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATA----------------------------------- Phomopsis_sp_EU002917 ---------------------------CGTTGGTGAACCAGCGGAGGGATCATTGCTGGAACGCGCCCCT-GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCT-TACTGTTGCCTCGGCGCAGGCCGTCCCCC---------ATGGGGTCCC---TTGGAG---AC--------AAGGAGCA------GCCGGCCGGTGGCCAAATTAACTCT-GTTTTTACACTG-TAACTCTGAGTACAAAA--CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGTTGGGGCACTGCCTGT------------AAA---AGGGCAGGCCCTGAAATATAGTGGCGAGCTCGCCAGGACTCCGAGCGTAGTAGTTAAACCCTCGCTTTGGAAGGCC-TGGCGGTGCCCTGCCGTTAAACCCC-AACTTTTGAAAATT-GACCTCGGATCAGGTAGGAATACCCGC------------------------------ Phomopsis_sp_EU512922 -------------------------TCCGTAGGTGAACCTGCGGAGGGATCATTGCTGGAACGCGCCTC--GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCCATACTGTTGCCTCGGCGCAGGCCGGCCTTTCTC-----GGTAAAGGCCC---CCTGGAG--AC--------AGGGAGCA------GCCCGCCGGCGGCCAGCCAAACTCT-GATTCTATAGTG-GATCTCTGAGTAAAAAA--CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGCCTGT------------GAA---AGGGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTACATC-TCGCTCTGGGAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA- Phomopsis_sp7_AY485742 --------------------------------------------AGGGATCATTGCTGGAACGCGCCCCT-GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCT-TACTGTTGCCTCGGCGCAGGCCGTCCCCC---------CTGGGGTCCC---TTTTGTCTCAA--------AAGGAGCA------GCCGGCCGGTGGCCAAATTAACTCT-GTTTTTACACTG-AAACTCTGAGTACAAAA--CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGATGGGGCACTGCCTGT------------AAA---AGGGCAGGCCCTGAAATATAGTGGCGAGCTCGCCAGGACTCCGAGCGTAGTAGTTAAACCCTCGCTTTGGAAGGCC-TGGCGGTGCCCTGCCGTTAAACCCC-AACTCTTGAAAATTTGACCTCGGATCAGGT------------------------------------------ Phomopsis_theicola_AY485723 --------------------------------------------AGGGATCATTGCTGGAACGCGCCCCT-GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCT-TACTGTTGCCTCGGCGCAGGCCGTCCCCTG--------ATGGGGTCCC---TCTGGAGAC----------GAGGAGCA------GCCGGCCGGTGGCCAAATTAACTCT-GTTTTTAAACTG-AAACTCTGAGTACAAAA--CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGTTGGGGCACTGCTTTC------------TAAC-GAGAGCAGGCCCTGAAATATAGTGGCGAGCTCGCCAGGACTCCGAGCGCAGTAGTTAAACCCTCGCTTTGGAAGGCC-TGGCGGTGCCCTGCCGTTAAACCCC-AACTTCTGAAAATTTGACCTCGGATCAGGT------------------------------------------ Phomopsis_theicola_DQ286286 ----------------------------------------------GGATCATTGCTGGAACGCGCCCCT-GGCGCA-CCCAGAAACCCTTTGTGAACTTATACCT-TACTGTTGCCTCGGCGCAGGCCGTCCCCTG--------ATGGGGTCCC---TCTGGAGACA---------GAGGAGCA------GCCGGCCGGTGGCCAAATTAACTCT-GTTTTTACACTG-AAACTCTGAGTACAAAA--CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTGGCTTGGTGTTGGGGCACTGCTTTC------------TAAC-GAGAGCAGGCCCTGAAATATAGTGGCGAGCTCGCCAGGACTCCGAGCGTAGTAGTTAAACCCTCGCTTTGGAAGGCC-TGGCGGTGCCCTGCCGTTAAACCCC-AACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATA----------------------------------- Valsa_ceratosperma_DQ241769 --------------------------------------------AGGGATCATTGCTGGAA-GCGCCGCAAGGTGCA-CCCAGAAACCCTTTGTGAACTTATACCTACATCGTTGCCTCGGCGCTGGCTGCCCCTCCCGCCCTGGGAGGGGGCCCGCCTCTGGTCGTAA-AAACCCAGGGGAGGACAGCAGGCCCGCCGGCGGCCCAATTAACTCTTGTATTTACTGAGTAAAATCTGAGTAAGCTT---CTAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCAGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTTGCTTGGTGTTGGGGCATTACCTGAGACCGCCTCCGGGCGGGCCGGGTAAGCCCTGAAATTTAGTGGCGAGCTCGCCAGGACTCCGAGCGCAGTAGTAAAACCCTCGCTTTGGACTGTACTGGCGCGGCCCTGCCGTAAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAA--------------------- ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = ITS) = N: 1-652; CODONPOSSET CodonPositions (CHARACTERS = ITS) = N: 1-652; END; BEGIN TREES; TITLE Tb9371; LINK TAXA = Taxa1; TRANSLATE 1 Phomopsis_theicola_DQ286286, 2 Phomopsis_theicola_AY485723, 3 Diaporthe_neotheicola_Di_C004_5, 4 Phomopsis_sp7_AY485742, 5 Phomopsis_sp_EU002917, 6 Diaporthe_lusitanicae_Ph_C086_2, 7 Diaporthe_lusitanicae_Ph_C170_1, 8 Diaporthe_lusitanicae_Di_C001_5, 9 Phomopsis_sp_DQ286285, 10 Diaporthe_helianthi_AY485749, 11 Diaporthe_helianthi_AY485748, 12 Diaporthe_ambigua_Di_C002_9, 13 Diaporthe_ambigua_AY485744, 14 Diaporthe_ambigua_Di_C003_10, 15 Diaporthe_ambigua_DQ286268, 16 Phomopsis_sp_AF102999, 17 Phomopsis_sp_AB302247, 18 Diaporthe_angelicae_Ph_C032_1, 19 Diaporthe_angelicae_Ph_C068_2, 20 Diaporthe_angelicae_Ph_C159_1, 21 Diaporthe_angelicae_Ph_C168_1, 22 Diaporthe_angelicae_Ph_C165_2, 23 Diaporthe_angelicae_Ph_C166_1, 24 Diaporthe_angelicae_Ph_C142_2, 25 Diaporthe_angelicae_Ph_C150_1, 26 Diaporthe_angelicae_Ph_C133_1, 27 Diaporthe_angelicae_Ph_C135_1, 28 Diaporthe_angelicae_Ph_C118_1, 29 Diaporthe_angelicae_Ph_C121_1, 30 Diaporthe_angelicae_Ph_C094_2, 31 Diaporthe_angelicae_Ph_C098_2, 32 Diaporthe_angelicae_AY196779, 33 Diaporthe_angelicae_AY196778, 34 Phomopsis_sp_EU512922, 35 Diaporthe_sp_EU311606, 36 Diaporthe_sp_EU311605, 37 Valsa_ceratosperma_DQ241769, 38 Leucostoma_persoonii_DQ996042; TREE PAUP_1 = [&R] ((((1,2,3),(4,5)),((((6,7,8),(9,10,11)),((12,13,14,15),(16,17))),((18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34),(35,36)))),(37,38)); TREE PAUP_2 = [&R] ((((1,2,3),(4,5)),(((6,7,8),(9,10,11)),(((12,13,14,15),(16,17)),((18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34),(35,36))))),(37,38)); TREE PAUP_3 = [&R] ((((1,2,3),(4,5)),(((6,7,8),9,10,11),(((12,13,14,15),(16,17)),((18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34),(35,36))))),(37,38)); TREE Fig._2 = [&R] ((((1,2,3),(4,5)),((((6,7,8),(9,10,11)),((12,13,14,15),(16,17))),(((18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33),34),(35,36)))),(37,38)); TREE PAUP_5 = [&R] ((((1,2,3),(4,5)),((((6,7,8),(9,10,11)),((12,13,14,15),(16,17))),(((18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33),34),35,36))),(37,38)); TREE PAUP_6 = [&R] ((((1,2,3),(4,5)),(((6,7,8),(9,10,11)),(((12,13,14,15),(16,17)),(((18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33),34),(35,36))))),(37,38)); TREE PAUP_7 = [&R] ((((1,2,3),(4,5)),(((6,7,8),(9,10,11)),(((12,13,14,15),(16,17)),(((18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33),34),35,36)))),(37,38)); TREE PAUP_8 = [&R] ((((1,2,3),(4,5)),(((6,7,8),9,10,11),(((12,13,14,15),(16,17)),(((18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33),34),(35,36))))),(37,38)); TREE PAUP_9 = [&R] ((((1,2,3),(4,5)),(((6,7,8),9,10,11),(((12,13,14,15),(16,17)),(((18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33),34),35,36)))),(37,38)); TREE PAUP_10 = [&R] ((((1,2,3),(4,5)),(((6,7,8),((9,10,11),((12,13,14,15),(16,17)))),(((18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33),34),(35,36)))),(37,38)); TREE PAUP_11 = [&R] ((((1,2,3),(4,5)),(((6,7,8),((9,10,11),((12,13,14,15),(16,17)))),(((18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33),34),35,36))),(37,38)); END;