#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on March 29, 2024; 15:03 GMT TreeBASE (cc) 1994-2008 Study reference: Billet G., & Bardin J. 2018. Serial Homology and Correlated Characters in Morphological Phylogenetics: Modeling the Evolution of Dental Crests in Placentals. Systematic Biology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S22395] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=286; TAXLABELS Acotherulum Adelomys Alces Alcidedorbignya Allocebus Allopterodon Alouatta Altacreodus Anisodon Anoplotherium Anoura Anourosorex Aotus Arctocyon Asellia Asmithswoodwardia Atelerix_albiventris Atelerix_algirus Ateles_belzebuth Ateles_paniscus Avahi Axis Babyrousa Barbastella Bemalambda Blarina Blastocerus Cainotherium Calcochloris_leucorhinus_103 Calcochloris_leucorhinus_1331 Callicebus Callospermophilus_lateralis Camelus_bactrianus Camelus_dromedarius Capreolus Carollia Cebochoerus Cebus_apella Cebus_olivaceus Cephalophus Cercocebus Cercopithecus_alboangularis Cercopithecus_ascanius Cercopithecus_cephus_1808 Cercopithecus_cephus_434 Cercopithecus_nictitans Cervus_elaphus Cervus_nippon Chaerophon Chalinolobus Cheirogalus Chlorocebus_ Choeroniscus Choeropsis Chrysochloris Cocomys Colbertia Coleura Colobus Coryphodon Crocidura Cynocephalus Dacrytherium Dama_dama Dama_mesopotomica Dendrohyrax Desmana Diacodexis Diadiaphorus Diceros Dichobune Didelphodus Didolodus Doliochoerus Dormaalocyon Echinops Echinosorex Elaphodus Elaphurus Emballonura Eozygodon Eptesicus Erinaceus Eritherium Erythrocebus Esthonyx Eulemur_fulvus Eulemur_macaco Eulemur_mongoz Euroscaptor Galago Galemys Galeopterus Geogale Giraffa Glischropus Glossophaga Gomphos Gorilla Hapalemur_griseus_3354 Hapalemur_griseus_3356 Hemicentetes Henricosbornia Heterohyrax Hippocamelus Hippopotamus Hipposideros Homo Hydropotes Hyemoschus Hylobates Hylochoerus Hylomys Hyracotherium Indri Isotemnus Kennalestes Kerivoula Lagothrix Lama Lasiurus Lavia Lemur_catta Lepilemur Leptacodon Leptictis Limnogale Litocranius Loris Lycophocyon Macaca_fascicularis Macaca_sylvanus Maelestes Magnadapis Maiorana Mandrillus Matutinia Mazama_americana_135 Mazama_americana_I2233 Mazama_gouazoubira_687 Mazama_gouazoubira_796 Megaderma Megaladapis Metriotherium Miacis Microcebus Microgale_dobsoni_2493 Microgale_dobsoni_2507 Micronycteris Micropotamogale Miguelsoria Mimon Miniopterus Molossus Mops Mormoops Moschiola Moschus Muntiacus_muntjac Muntiacus_sp Murina Myosorex Myotis Nasalis Nectogale Neomys Neurogymnurus Noctilio Nomascus Notopithecus Notostylops Nyctalus Nycteris Nycticebus_coucang_54 Nycticebus_coucang_719 Ocepeia Odocoileus_hemonius Odocoileus_virginianus Okapia Oldfieldthomasia Oryzorictes Otolemur Otonycteris Pachyhyrax_ Pachynolophus Palaeotherium Pan_troglodytes_227 Pan_troglodytes_445 Pantolambda Papio_anubis Papio_cynocephalus Pappocricetodon Paracrocidura Paradelomys Paraechinus Paramys Pararyctes Pecari Perodicticus Phaner Phenacodus Phosphatherium Phyllostomus Pipistrellus Pithecia Platyrrhinus Plecotus Pleuraspidotherium Pliocolobus Pongo Potamochoerus Potamogale Presbytis Procavia_ Procolobus Prokennalestes Prolemur Pronycticebus Propithecus_coquereli Propithecus_verreauxi Proterotherium Protungulatum Pteropteryx Pudu Puercolestes Pygathris Rangifer_tarandus_85.1 Rangifer_tarandus_85.2 Rhinoceros_sondaicus Rhinoceros_unicornis Rhinolophus_ferrumequinum Rhinolopus_euryale Rhinopithecus Rhinopoma Rhogeessa Rhombomylus Rucervus Rusa_timorensis Rusa_unicolor_46 Rusa_unicolor_543 Saccolaimus Saimiri_ Scalopus Sciuravus Scotophilus Setifer Simpsonotus Solenodon_paradoxus_156 Solenodon_paradoxus_341 Sorex Spermophilus_citellus Spermophilus_fulvus Sturnira Suncus Sus Sylvicapra Sylvisorex Talpa Taphozous Tapirus_indicus Tapirus_pinchaque Tapirus_terrestris Tarsius Tayassu Tenrec Theridomys Theropithecus Tiuclaenus Tonatia Trachops Trachypithecus_auratus_306 Trachypithecus_auratus_961 Tragelaphus Tragulus_javanicus Tragulus_napu Triaenops Trigonostylops Tupaia_glis Tupaia_tana Tuscahomys Ultrapithecus Vampyrum Varecia Vigugna Vulpavus Zalambdalestes ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M45017] TITLE Cingulum_on_Molars_in_Placentalia; LINK TAXA = Taxa1; DIMENSIONS NCHAR=6; FORMAT DATATYPE=Standard SYMBOLS= "0 1 2 3 4 5 6 7" MISSING=? GAP= -; CHARSTATELABELS 1 M1_anterior_cingulum, 2 M2_anterior_cingulum, 3 M3_anterior_cingulum, 4 M1_posterior_cingulum, 5 M2_posterior_cingulum, 6 M3_posterior_cingulum, ; MATRIX Acotherulum 111100 Adelomys 111111 Alces 110000 Alcidedorbignya 111111 Allocebus 111111 Allopterodon 000000 Alouatta 000111 Altacreodus 111111 Anisodon 111111 Anoplotherium 111000 Anoura 000000 Anourosorex 000110 Aotus 000111 Arctocyon 111111 Asellia 000110 Asmithswoodwardia 111111 Atelerix_albiventris 000110 Atelerix_algirus 111110 Ateles_belzebuth 000111 Ateles_paniscus 000111 Avahi 000111 Axis 111111 Babyrousa 111111 Barbastella 111111 Bemalambda 111111 Blarina 000110 Blastocerus 000000 Cainotherium 111111 Calcochloris_leucorhinus_103 000000 Calcochloris_leucorhinus_1331 000000 Callicebus 111111 Callospermophilus_lateralis 111111 Camelus_bactrianus 000000 Camelus_dromedarius 000000 Capreolus 000000 Carollia 000000 Cebochoerus 111111 Cebus_apella 000111 Cebus_olivaceus 000111 Cephalophus 000000 Cercocebus 111111 Cercopithecus_alboangularis 000111 Cercopithecus_ascanius 000111 Cercopithecus_cephus_1808 000111 Cercopithecus_cephus_434 010111 Cercopithecus_nictitans 000111 Cervus_elaphus 011001 Cervus_nippon 000000 Chaerophon 000110 Chalinolobus 111111 Cheirogalus 111111 Chlorocebus_ 011111 Choeroniscus 000000 Choeropsis 111111 Chrysochloris 000000 Cocomys 111111 Colbertia 111111 Coleura 000110 Colobus 111111 Coryphodon 111001 Crocidura 000110 Cynocephalus 000000 Dacrytherium 111000 Dama_dama 111111 Dama_mesopotomica 000000 Dendrohyrax 111111 Desmana 000000 Diacodexis 111111 Diadiaphorus 111111 Diceros 111110 Dichobune 111111 Didelphodus 000000 Didolodus 111111 Doliochoerus 111111 Dormaalocyon 110110 Echinops 000000 Echinosorex 111111 Elaphodus 000000 Elaphurus 000000 Emballonura 000111 Eozygodon 111111 Eptesicus 111111 Erinaceus 111110 Eritherium 111111 Erythrocebus 111111 Esthonyx 111111 Eulemur_fulvus 110110 Eulemur_macaco 110100 Eulemur_mongoz 111110 Euroscaptor 111000 Galago 000110 Galemys 000000 Galeopterus 000000 Geogale 000000 Giraffa 000000 Glischropus 111111 Glossophaga 000000 Gomphos 000111 Gorilla 100111 Hapalemur_griseus_3354 000111 Hapalemur_griseus_3356 111111 Hemicentetes 000000 Henricosbornia 111111 Heterohyrax 111111 Hippocamelus 000000 Hippopotamus 111111 Hipposideros 000110 Homo 000111 Hydropotes 000000 Hyemoschus 110111 Hylobates 111111 Hylochoerus 111001 Hylomys 111111 Hyracotherium 111111 Indri 000111 Isotemnus 111111 Kennalestes 111111 Kerivoula 111111 Lagothrix 000111 Lama 000000 Lasiurus 111111 Lavia 111111 Lemur_catta 110100 Lepilemur 000111 Leptacodon 111111 Leptictis 111111 Limnogale 000000 Litocranius 000000 Loris 000111 Lycophocyon 100110 Macaca_fascicularis 111111 Macaca_sylvanus 111111 Maelestes 111111 Magnadapis 111111 Maiorana 111111 Mandrillus 111111 Matutinia 000111 Mazama_americana_135 000000 Mazama_americana_I2233 000000 Mazama_gouazoubira_687 000000 Mazama_gouazoubira_796 011111 Megaderma 111110 Megaladapis 111111 Metriotherium 111111 Miacis 110110 Microcebus 110111 Microgale_dobsoni_2493 000000 Microgale_dobsoni_2507 000000 Micronycteris 000110 Micropotamogale 000000 Miguelsoria 111111 Mimon 000110 Miniopterus 111111 Molossus 111110 Mops 000110 Mormoops 000110 Moschiola 000000 Moschus 000000 Muntiacus_muntjac 111111 Muntiacus_sp 101000 Murina 111111 Myosorex 000110 Myotis 111111 Nasalis 000111 Nectogale 000110 Neomys 100110 Neurogymnurus 111110 Noctilio 000110 Nomascus 111111 Notopithecus 111111 Notostylops 111111 Nyctalus 111111 Nycteris 000110 Nycticebus_coucang_54 000111 Nycticebus_coucang_719 000110 Ocepeia 111111 Odocoileus_hemonius 000000 Odocoileus_virginianus 111111 Okapia 000000 Oldfieldthomasia 111111 Oryzorictes 000000 Otolemur 000110 Otonycteris 010110 Pachyhyrax_ 111111 Pachynolophus 111111 Palaeotherium 111111 Pan_troglodytes_227 000111 Pan_troglodytes_445 111111 Pantolambda 111111 Papio_anubis 111111 Papio_cynocephalus 111111 Pappocricetodon 111111 Paracrocidura 000110 Paradelomys 111111 Paraechinus 111110 Paramys 111111 Pararyctes 111111 Pecari 111001 Perodicticus 000111 Phaner 000111 Phenacodus 111111 Phosphatherium 111111 Phyllostomus 000110 Pipistrellus 111111 Pithecia 111111 Platyrrhinus 000110 Plecotus 111111 Pleuraspidotherium 111000 Pliocolobus 111111 Pongo 000111 Potamochoerus 111111 Potamogale 000000 Presbytis 000111 Procavia_ 111111 Procolobus 111111 Prokennalestes 000000 Prolemur 000111 Pronycticebus 111111 Propithecus_coquereli 000111 Propithecus_verreauxi 000111 Proterotherium 111111 Protungulatum 111111 Pteropteryx 000110 Pudu 000000 Puercolestes 111110 Pygathris 000111 Rangifer_tarandus_85.1 010000 Rangifer_tarandus_85.2 000000 Rhinoceros_sondaicus 111110 Rhinoceros_unicornis 111110 Rhinolophus_ferrumequinum 111111 Rhinolopus_euryale 110110 Rhinopithecus 000111 Rhinopoma 000110 Rhogeessa 111111 Rhombomylus 000111 Rucervus 111011 Rusa_timorensis 001111 Rusa_unicolor_46 111111 Rusa_unicolor_543 111111 Saccolaimus 000110 Saimiri_ 110111 Scalopus 000000 Sciuravus 111111 Scotophilus 000110 Setifer 000000 Simpsonotus 111111 Solenodon_paradoxus_156 000110 Solenodon_paradoxus_341 000111 Sorex 000110 Spermophilus_citellus 111001 Spermophilus_fulvus 111111 Sturnira 000000 Suncus 000110 Sus 111111 Sylvicapra 000000 Sylvisorex 000110 Talpa 000000 Taphozous 000110 Tapirus_indicus 111111 Tapirus_pinchaque 111111 Tapirus_terrestris 111111 Tarsius 111111 Tayassu 111011 Tenrec 000000 Theridomys 111111 Theropithecus 111111 Tiuclaenus 111111 Tonatia 000110 Trachops 000110 Trachypithecus_auratus_306 011111 Trachypithecus_auratus_961 011111 Tragelaphus 000000 Tragulus_javanicus 000000 Tragulus_napu 000000 Triaenops 000110 Trigonostylops 111111 Tupaia_glis 000100 Tupaia_tana 000110 Tuscahomys 111111 Ultrapithecus 111111 Vampyrum 000110 Varecia 110111 Vigugna 000000 Vulpavus 110110 Zalambdalestes 000000 ; END; BEGIN TREES; TITLE Cingulum_on_Molars_in_Placentalia; LINK TAXA = Taxa1; TRANSLATE 1 Zalambdalestes, 2 Maelestes, 3 Prokennalestes, 4 Kennalestes, 5 Protungulatum, 6 Didolodus, 7 Tiuclaenus, 8 Leptictis, 9 Pleuraspidotherium, 10 Arctocyon, 11 Phenacodus, 12 Ocepeia, 13 Altacreodus, 14 Didelphodus, 15 Puercolestes, 16 Maiorana, 17 Pararyctes, 18 Simpsonotus, 19 Notostylops, 20 Isotemnus, 21 Oldfieldthomasia, 22 Ultrapithecus, 23 Notopithecus, 24 Henricosbornia, 25 Colbertia, 26 Trigonostylops, 27 Miguelsoria, 28 Diadiaphorus, 29 Proterotherium, 30 Asmithswoodwardia, 31 Pronycticebus, 32 Magnadapis, 33 Megaladapis, 34 Hapalemur_griseus_3354, 35 Hapalemur_griseus_3356, 36 Lemur_catta, 37 Eulemur_mongoz, 38 Varecia, 39 Eulemur_fulvus, 40 Eulemur_macaco, 41 Prolemur, 42 Lepilemur, 43 Indri, 44 Propithecus_coquereli, 45 Propithecus_verreauxi, 46 Avahi, 47 Phaner, 48 Nycticebus_coucang_719, 49 Nycticebus_coucang_54, 50 Perodicticus, 51 Galago, 52 Otolemur, 53 Loris, 54 Tarsius, 55 Ateles_belzebuth, 56 Ateles_paniscus, 57 Lagothrix, 58 Callicebus, 59 Pithecia, 60 Cebus_olivaceus, 61 Cebus_apella, 62 Saimiri_, 63 Aotus, 64 Alouatta, 65 Colobus, 66 Pliocolobus, 67 Procolobus, 68 Presbytis, 69 Pygathris, 70 Rhinopithecus, 71 Trachypithecus_auratus_306, 72 Trachypithecus_auratus_961, 73 Nasalis, 74 Cercopithecus_alboangularis, 75 Cercopithecus_ascanius, 76 Cercopithecus_cephus_1808, 77 Cercopithecus_cephus_434, 78 Cercopithecus_nictitans, 79 Chlorocebus_, 80 Cercocebus, 81 Erythrocebus, 82 Macaca_fascicularis, 83 Macaca_sylvanus, 84 Mandrillus, 85 Papio_cynocephalus, 86 Papio_anubis, 87 Theropithecus, 88 Gorilla, 89 Pan_troglodytes_445, 90 Pan_troglodytes_227, 91 Hylobates, 92 Pongo, 93 Homo, 94 Allocebus, 95 Cheirogalus, 96 Microcebus, 97 Nomascus, 98 Cynocephalus, 99 Galeopterus, 100 Tupaia_tana, 101 Tupaia_glis, 102 Esthonyx, 103 Alcidedorbignya, 104 Pantolambda, 105 Coryphodon, 106 Bemalambda, 107 Rhinopoma, 108 Saccolaimus, 109 Taphozous, 110 Emballonura, 111 Pteropteryx, 112 Coleura, 113 Nycteris, 114 Megaderma, 115 Lavia, 116 Asellia, 117 Hipposideros, 118 Triaenops, 119 Rhinolopus_euryale, 120 Rhinolophus_ferrumequinum, 121 Noctilio, 122 Mormoops, 123 Anoura, 124 Carollia, 125 Choeroniscus, 126 Glossophaga, 127 Micronycteris, 128 Mimon, 129 Phyllostomus, 130 Platyrrhinus, 131 Sturnira, 132 Tonatia, 133 Trachops, 134 Vampyrum, 135 Barbastella, 136 Chalinolobus, 137 Eptesicus, 138 Murina, 139 Glischropus, 140 Kerivoula, 141 Lasiurus, 142 Miniopterus, 143 Myotis, 144 Nyctalus, 145 Pipistrellus, 146 Otonycteris, 147 Plecotus, 148 Scotophilus, 149 Rhogeessa, 150 Molossus, 151 Mops, 152 Chaerophon, 153 Echinosorex, 154 Neurogymnurus, 155 Leptacodon, 156 Hylomys, 157 Paraechinus, 158 Atelerix_albiventris, 159 Atelerix_algirus, 160 Erinaceus, 161 Solenodon_paradoxus_341, 162 Solenodon_paradoxus_156, 163 Crocidura, 164 Paracrocidura, 165 Sylvisorex, 166 Myosorex, 167 Anourosorex, 168 Suncus, 169 Blarina, 170 Nectogale, 171 Neomys, 172 Sorex, 173 Galemys, 174 Desmana, 175 Scalopus, 176 Euroscaptor, 177 Talpa, 178 Eozygodon, 179 Eritherium, 180 Phosphatherium, 181 Potamogale, 182 Tenrec, 183 Setifer, 184 Hemicentetes, 185 Oryzorictes, 186 Microgale_dobsoni_2507, 187 Microgale_dobsoni_2493, 188 Limnogale, 189 Echinops, 190 Geogale, 191 Micropotamogale, 192 Acotherulum, 193 Dichobune, 194 Metriotherium, 195 Diacodexis, 196 Doliochoerus, 197 Cebochoerus, 198 Cainotherium, 199 Dacrytherium, 200 Anoplotherium, 201 Vigugna, 202 Lama, 203 Camelus_bactrianus, 204 Camelus_dromedarius, 205 Tayassu, 206 Babyrousa, 207 Hylochoerus, 208 Pecari, 209 Potamochoerus, 210 Sus, 211 Cervus_elaphus, 212 Muntiacus_muntjac, 213 Muntiacus_sp, 214 Axis, 215 Odocoileus_hemonius, 216 Odocoileus_virginianus, 217 Cervus_nippon, 218 Rucervus, 219 Elaphurus, 220 Rangifer_tarandus_85.1, 221 Rangifer_tarandus_85.2, 222 Alces, 223 Hydropotes, 224 Blastocerus, 225 Elaphodus, 226 Moschus, 227 Tragulus_javanicus, 228 Tragulus_napu, 229 Moschiola, 230 Hyemoschus, 231 Rusa_timorensis, 232 Rusa_unicolor_543, 233 Rusa_unicolor_46, 234 Pudu, 235 Dama_dama, 236 Dama_mesopotomica, 237 Mazama_gouazoubira_796, 238 Mazama_gouazoubira_687, 239 Mazama_americana_135, 240 Mazama_americana_I2233, 241 Hippocamelus, 242 Capreolus, 243 Litocranius, 244 Tragelaphus, 245 Sylvicapra, 246 Cephalophus, 247 Giraffa, 248 Okapia, 249 Choeropsis, 250 Hippopotamus, 251 Miacis, 252 Vulpavus, 253 Lycophocyon, 254 Dormaalocyon, 255 Paramys, 256 Paradelomys, 257 Adelomys, 258 Theridomys, 259 Tuscahomys, 260 Sciuravus, 261 Cocomys, 262 Pappocricetodon, 263 Spermophilus_fulvus, 264 Spermophilus_citellus, 265 Callospermophilus_lateralis, 266 Rhombomylus, 267 Matutinia, 268 Gomphos, 269 Allopterodon, 270 Anisodon, 271 Hyracotherium, 272 Palaeotherium, 273 Pachynolophus, 274 Diceros, 275 Rhinoceros_sondaicus, 276 Rhinoceros_unicornis, 277 Tapirus_terrestris, 278 Tapirus_pinchaque, 279 Tapirus_indicus, 280 Pachyhyrax_, 281 Procavia_, 282 Dendrohyrax, 283 Heterohyrax, 284 Chrysochloris, 285 Calcochloris_leucorhinus_103, 286 Calcochloris_leucorhinus_1331; TREE 'TREE_OK' = [&R] (((((((((100,101),(((259,((260,262),(((264,263),265),(255,(257,(256,258)))))),261),((266,267),268))),((99,98),((((((((((74,75),(76,77)),78),(79,81)),((82,83),(((85,86),87),(80,84)))),((65,(67,66)),(68,(((69,73),70),(72,71))))),((97,91),(92,(88,(93,(90,89)))))),((58,59),((((55,56),57),64),(((60,61),62),63)))),54),((31,32),(((((49,48),53),50),(51,52)),(((((((34,35),41),36),(40,(37,39))),38),33),(((45,44),(43,46)),((42,47),(95,(94,96)))))))))),((((((((((((((145,139),144),136),(149,141)),(((137,135),146),147)),((140,138),143)),148),(108,109)),((((110,112),111),113),(150,(152,151)))),(((((((126,(125,123)),(133,((132,(129,128)),134))),(124,(130,131))),127),122),121),142)),((115,114),(107,(((117,116),118),(119,120))))),((((((((((20,((23,(22,21)),25)),19),18),24),26),(7,(6,(27,(30,(28,29)))))),(11,((271,(273,272)),(270,(((278,277),279),(274,(275,276))))))),(((193,194),195),((((((206,207),209),210),(196,(208,205))),(192,197)),(((((201,202),(203,204)),198),(199,200)),((249,250),(((228,227),230),((247,248),(((229,226),(244,(243,(245,246)))),((((((((237,238),241),224),234),((215,216),(239,240))),(221,220)),(222,(242,223))),((((((231,(233,232)),(211,217)),(218,219)),(235,236)),214),(225,(212,213)))))))))))),5),(((16,(9,10)),102),(14,(106,(103,(104,105))))))),(269,(((251,253),252),254))),(((161,162),17),((((157,(158,(159,160))),(156,153)),154),(155,(((((167,(170,171)),172),169),((((163,164),168),165),166)),(175,((174,173),(176,177))))))))),((((((282,281),283),280),((180,178),179)),12),((284,(285,286)),((181,191),(((182,184),(189,183)),(190,(185,(188,(186,187))))))))),8),1),((2,(13,15)),4)),3); END;