#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 26, 2024; 6:15 GMT TreeBASE (cc) 1994-2008 Study reference: Schott E.J., Di lella S., Bachvaroff T.R., Amzel M., & Vasta G.R. 2019. Lacking catalase, a protistan parasite draws on its photosynthetic ancestry to complete an antioxidant repertoire for intracellular survival. BMC Evolutionary Biology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S23146] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=55; TAXLABELS _Nicotiana_tabacum_BAA78553_stromal Akashiwo_sanguinea_comp16595_c0_seq1 Akashiwo_sanguinea_comp20110_c0_seq1 Akashiwo_sanguinea_comp2849_c0_seq1 Akashiwo_sanguinea_comp38740_c0_seq1 Amborella_trichopoda_XP_006847188_ Amhidinium_carterae_comp7140_c0_seq1 Amphidinium_carterae_comp657_c0_seq1 Amphidinium_carterae_comp6815_c0_seq1 Brachypodium_distachyon_XP_003578843_ Crypthecodinium_cohnii_comp17987_c1_seq1 Crypthecodinium_cohnii_comp39938_c0_seq1 Crypthecodinium_cohnii_comp40137_c0_seq13 Crypthecodinium_cohnii_comp45534_c0_seq1 Elaeis_guineensis_XP_010930723_ Guillardia_theta_1_88361 Hematodinium_EST63350 Jatropha_curcas_XP_012078303_ Karenia_brevis_comp115489_c0_seq1 Karenia_brevis_comp118584_c0_seq1 Karenia_brevis_comp142743_c1_seq1 Karlodinium_veneficum__comp13947_c0_seq1 Karlodinium_veneficum_comp8423_c0_seq1 Kryptoperidinium_foliaceaum_comp225609_c11_seq4 Kryptoperidinium_foliaceum_comp223782_c2_seq28 Medicago_truncatula_XP_003602044_ Nicotiana_tabacum_BAA78552_thylakoid_bound_APX Nicotiana_tabacum_XP_016437245_APX6_chloroplastic_isoformX2_ Nicotiana_tabacum_XP_016469841_APX6_chloroplastic_isoformX1_ Nicotiana_tabacum_pdb_1IYN_BAC10691_stromal_ Oxyrrhis_marina_LB1974_c41711_g1_i1 Oxyrrhis_marina_unk_c89384_g1_i1 Perkinsus_marinus_ATCC_5098_XP_002767285_3 Perkinsus_marinus_ATCC_50983_XP_002767290_ Perkinsus_marinus_ATCC_50983_XP_002777381_ Phaeodactylum_tricornutum_CCAP_105_XP_002181744_5 Phaeodactylum_tricornutum_CCAP_1055XP_002181742_ Phoenix_dactylifera_XP_017696878_ Populus_euphratica_XP_011027505_ Scrippsiella_trochoidea_comp104639_c0_seq1 Scrippsiella_trochoidea_comp104639_c0_seq2 Scrippsiella_trochoidea_comp114700_c0_seq1 Scrippsiella_trochoidea_comp83567_c2_seq1 Scrippsiella_trochoidea_comp94602_c0_seq1 Setaria_italica_XP_004977222_ Symbiodinium_sp_clc_MMETSP1123_1_contig_26331 Symbiodinium_sp._clc_MMETSP1123_1_contig_17332 Symbiodinium_sp._clc_MMETSP1123_1_contig_2706 Thalassiosira_pseudonana_CCMP1335_XP_002291359_ Unknown_diatom_Oxyrrhis_marina_LB1974_c35849_g1_i1 Vitrella_brassicaformis__c1399_g1_i1 Vitrella_brassicaformis_c15866_g1_i1 Vitrella_brassicaformis_c15866_g1_i1_2 Vitrella_brassicaformis_c15866_g1_i2 Vitrella_brassicaformis_c15866_g1_i3 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M46907] TITLE APX_alignment_by_muscle; LINK TAXA = Taxa1; DIMENSIONS NCHAR=347; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] _Nicotiana_tabacum_BAA78553_stromal QLKSAREDIKELLKNTFCHPILVRLGWHDAGTYNKN--IEEWPQRGGANG-SLRFEVELKHGANAGL-VNALKLLQPIKDKYANVTYADLFQLASATAIEEAGGPK--L--PMKYGRVDVS--APEEC--PEEGR--------LPDAGP---------PSPA--------------SHLRDVFY-RMGLNDKEIVALSGAHTLGRSRPERSGW-------GKPETKYTKDG--------------PGNP-GGQSWTVQWLKFDNSYF---KDIK-----------ERRDEDLLVLPTDAALFEDSSFKEYAEKYAVNQDVFFKDYAEAHAKLSNLGAKFDPPEGFSI Akashiwo_sanguinea_comp16595_c0_seq1 ---ACCQELKAFINENNCAPIMVRLAWHDSGNFDKR--ISSWPECGGANA-SIIHEPEISYGANAGL-SKAVGFLKPLKEKYPEVSWADLIQMASACAIEVAGGPA--I--PMKYGRVDVK--DGSAC-PGRTSR-GTADNAGLPDAKA----PFG--CGAS-----------DPATHLRNIFG-RMGFDDEGIVALSGAHTIGRAFKNRSGTVDNGYGDASA-SKYTRSE---CVVRPDGTSG-VGMS-GGKSWTSNWLTFDNSYF---QYLK-----------KGPDADLIWFPTDAALHEDAKFKVFYEKFADSKASFFEAYVRAHKQLSELGSKFEPAEGFTL Akashiwo_sanguinea_comp20110_c0_seq1 VLTALKAELTSFIDSINCGPILVRLAWHDSGTYDIR--IKSWPECGGANG-AIIFGPEISMGANAGL-DKAVRYLKNFKEKYPSVSWADIIQMASATAIEWCGGPK--I--NMKYGRVSVT--DESQC-AGPKSREGFGDNTGLPDAKP----PFG--CGAS-----------TAAEHLRNVFTKKMGFNDQEIVALSGAHTIGRAFKDRSGTCPFGYTSP---SNYTGGS---CSARFDGKAG-AGMP-GGCSWTKKWLKFDNSYF---ADYK------------AKDEHLLWFPTDEALHTDPIFKPTFDLYASDQAAFFRDYAAAHKKLSELGAKFEPAEGITL Akashiwo_sanguinea_comp2849_c0_seq1 MLLALQGELTSFIDSINCAPILVRLAWHDSGTYDIR--IKTWPECGGANG-AIILAPELNMGANAGL-DKAVRYLKTFKQKYPAVSWADLIQMASATAIEWCGGPK--I--SMKYGRVSVT--EESQC-AGPQSRQGFGGNAGLPDAKP----PFG--CGAA-----------SPAEHLRNVFTKKMGFTDQEIVALSGAHTIGRAFKERSGTCPFGYTSP---SNYTSGT---CVARPDAKAG-AGMQ-GGCSWTKKWLTFDNSYF---KD------YQA------KDEHLLWFPTDDALVTDPIFKQTFDLYASDSAAFFRDYAAAHKKLSELGAKFEPSEGITL Akashiwo_sanguinea_comp38740_c0_seq1 QLKSLQADLLEFVDNINCAPILVRLAWHDSGTYHKG--ITSWPECGGANG-SIIYSPEIDHGANNGL-IKAVGYLRPFKEDYPLVSWADLIQMASAMAIKHTGGPM--I--SMRYGRKDA---GAEAC-PGRQSR-GTGDNAGLPDAEP----PFG--CGAN-----------TAAQHLRNIFY-RMGFDDKDIVALSGAHTLGRAFKERSGVVQEGYGEANG-CVYTKSS-AACPVRHDGKAG-LGMP-GGKPWTRKWLTFDNGYF---KDYV------------DKDPNLLWMSTDLATHTDDSFKPHFQLYKKDQNAFFKDYADAHRRLSELGSKFEPPEGIVI Amborella_trichopoda_XP_006847188_ QLKKAREDIRQLLKTTFCHPIMVRLGWHDAGTYNKN--IEEWPQRGGANG-SLRFEIELKHAANAGL-VNALKLLQPIKEKYSGVTYADLFQLASATAIEEAGGPK--I--PMKYGRVDAN--GPDQC--PEEGR--------LPDAGP---------PSPA--------------DHLRDVFY-RMGLNDKDIVALSGAHTLGRSRPERSGW-------GKPETKYTKDG--------------PGAP-GGQSWTVQWLKFDNSYF---KDIK-----------EKRDEDLLVLPTDAVLFEDPSFKEYAEKYASDQDAFFKDYAEAHAKLSNLGAKFDPPEGFSV Amhidinium_carterae_comp7140_c0_seq1 QLKALREDLWKFVDKVNCNPIFLRLAWHDAGTYDKT--KSEFPDRGGANG-SIIYDPEINHGANNGL-FKAVGYLKPFKADYPLVSWADLIQMAGAVGIEHAGGPK--V--AMKYGRKDVS--GPEGC-PGRQSR-GTGDNAGLPDAFPGGDGKFG--CGAT-----------DPATHVRNIFY-RMGFDDKGIVALSGAHTIGRAFKERSGTVAEGYGEANG-CPYTKAVPRGCPIRHDGAGG-VGMP-GGKSWTTKWLKFDNEYF---QQHV----YEE------KDKDLFWADTDRCLHQDEGFKKYFMQYKDDQAAFFRDFAEAMKQLSEQGAEWSPTEGIAI Amphidinium_carterae_comp657_c0_seq1 EVRKAKAEIKELVDKINCGPILIRLAWHDSGTFDQR--IAEWPQKGGANG-GIRFAPEMSMGANAGL-TKAKGYLEKVNSKYPSISWADLIQLASATAVEAMGGPK--I--PMKYGRVAID--SPDQCAPPKSRQ-GFGDNAGLPDAKP----PFG--CGAS-----------DAAGHLRNVFSKKMGFDDKEIVALSGAHTIGRAFKSRSGTCPFGEGPQSA-SKYTTEG---VVARFDGKPG-VGMV-GGAAWTKNWLTFDNSYYAKHSEAA-------------SDEDLLWFPTDEALFTDPAFKVFAEKYAKDQATFFKDYAQAHKKLSELGVKWQPEG---- Amphidinium_carterae_comp6815_c0_seq1 ---ACRSELLTFIDRQNCAPILIRLAWHDSGNYDKR--ISSWPECGGANA-SIRHDPEINYGANAGL-KKAVGYLEPFKQKYPSITWADLIQMASACAIEACGGPV--I--LMKYGRVDVA--DGSAC-PGRTSR-GTADNAGLPDAMP----PYG--CGAK-----------EPGDHLRNIFY-RMGFDDAGIVALSGAHTVGRAFKERSGTVENGYGDAGA-TKYTKSS---SVARYDGGGG-VGMS-GGKSWTRNWLTFDNSYF---QSVM-----------SATEEDLIRFPTDAVLAQDAAFREHCAKFAKSNPDFQDAYARAHKRLSELGSKFEPQEGFTL Brachypodium_distachyon_XP_003578843_ ELRGAREDVRQLLKDKHCHPILVRLGWHDSGTYDKN--ISEWPKCGGANG-SLRFEIELKHAANAGL-VNALKLVQTIKDKYAGVTYADLFQLASATAIEEAGGPK--I--PMIYGRVDVS--APEQC--PPEGR--------LPAAGP---------PSPA--------------EHLREVFY-RMGLNDKEIVALSGAHTLGRSRPERSGW-------GKPETKYTKNG--------------PGAT-GGQSWTSQWLKFDNSYF---KDVK-----------ERRDEDLLVLPTDAVLFEDPSFKIYAERYAEDQDTFFEDYAEAHAKLSNLGSKFDPPKGISL Crypthecodinium_cohnii_comp17987_c1_seq1 QLKALRKDLFAFVDKQNCNPILVRLAWHDSGTFDKN--RTEWPDMGGANG-SIIYAPEINHGANNGL-NKGVNFLKPFKTDYPLVSWADLIQMASAVSIEHAGGPK--I--PMKYGRVDVA--GPEAC--PEGTSRGTAGNAGLPDAAM----PFG--CGAT-----------DAATHLRNIFH-RMGFTDQEIVALSGAHTLGRAFKERSGTVDEGYGEANA-CPFTKSVGL-CPVRHDGKAG-VGMP-GGKSWTKAWLKFDNSYY---KEYA------------ENNKDLLWLPTDRALHEDPEFKKTFVLYKDDQAAFFEGYSAAHKKLSELGSKFEPSEGIFI Crypthecodinium_cohnii_comp39938_c0_seq1 --------LVTLIKEKSCGPILLRTAWHDAGTYDMKNASKPWPNAGGAIG-SIRTDHEINAPPNAGLKKAITSYLQPIKDQVPGISWADLIQLGGATSVEVMGGPK--I--NMKYGRVDGV---PSELAPAPFG---------LPAAMP------DQSQGKD-------ADLKWAAQHLKDVFY-KYHMNDKDIVALSGAHTVGRAFKDRSGTVAEGSTDG---TKYTKRG---APELLKSLTA------GGRSWTKNWLVFDNSYF---TDMA------------KNDPEVITFPTDRCLSTDPCYKKFFDEFAKDEKAFFAAYADAHKRLSENGSKFEPASGIT- Crypthecodinium_cohnii_comp40137_c0_seq13 ---ACKKFLTDFINKNNCAPIMVRLAWHDSGNYDKR--ISEWPACGGANG-SIRFEPEINYGANAGL-AKGLKYLEPVKAKFPGVSWADLIQMASACAIEVTGGPK--I--PMKYGRVEAA--DSSAC-PAEKSR-GTDGNAGLPDAMP----PFG--CGAS-----------DAPTHLRNIFY-RMGFDDEGIVALSGAHT------------------------------------------------------------------------------------------------------------------------------------------------- Crypthecodinium_cohnii_comp45534_c0_seq1 DLKKAKILLQDLIREKSCGPILLRTAWHDAGTYDKANAGKPWPNAGGAIG-SIRTPHEIGAPPNAGLQKAIMAYLQPIKNKVPGVSWADLIQLAGATAVQEMGGPK--I--PMRYGRVDGE---PTEKAPPPFG---------LPSAKP-------DKPGPE--------DSAWAAQHLREVFY-KYGMNDNDIVALSGAHTVGRAFKDRSGTVEESSQSG---TSYTRKG---APQAKKSNTF------GGRSWTKNWLEFDNSYF---SQMK------------HHDREVLVFPTDRVLYVDPGFKPHFELFAKDQAAFFAAYADAHQRLSELGSKFSPPCGIS- Elaeis_guineensis_XP_010930723_ QLKSAREDIRELLKTTFCHPILVRLGWHDAGTYDKN--IAEWPQRGGANG-SLRFEIELKHAANAGL-VNALKLLQPIKDKYSGVTFADLFQLASATAIEEAGGPK--I--PMKYGRVDVS--GPEQC--PPEGK--------LPAAGP---------PSPA--------------GHLRDVFY-RMGLSDKEIVALSGAHTLGRSRPERSGW-------GKSETKYTKDG--------------PGAP-GGQSWTVQWLKFDNSYF---KDIK-----------ERKDEDLLVLPTDAVLFEDPSFKVYAEKYAEDQDAFFKDYAEAHAKLSNVGAKFDPPEGISI Guillardia_theta_1_88361 QLKGAKKMIEDLIDKTNANPIMVRLAWHDSGTFDAS-INADWPKAGGAIG-SIRFEPEIKHGANAGL-AGAVKMLEPVKKQFPAVSYADLFQMASACAIELAGGPK--I--DMKYGRVDAA--GPQDC--SPEGN--------LPDAEA---GPNGKYGGTS---GTKPTEDTTPNGHLRKVFY-RMGLNDEEIVALSGAHTLGRAFKDRSGL-------GAEKTKFTDGS---QVARADGKAG-IGRT-GGSSWTEKWLKFDNSYF---TTIP----------NKSADPELLKLSTDKTLFDDEGFRPFAEKFRDSQDEFFKSYANAHKKLSELGSKFEPADGIKI Hematodinium_EST63350 -LHDAREALRVFIDKINCAPILIRLAWHDSGTFDKE--IVSWPQCGGANG-SIRFDEELAHGANAGL-AKAVNYLQSFKKRFPALSWADLIQLASATAIEIISNSACRI--PMRYGRQDAG--TPA-----REGN--------LPASVA----PFPKTDPPT-----------SAAQHLRNVFY-RMSFNDQQIVALSGAHTIGRAFKNRSGVVDEEAGEGHG-TQYTSGE---FRARHDGKKG-VGMP-GGRSWAKKWLTFDNEYF---------------------KERDLDLPTDKCLQEDDHFRPHYVRYQKDNEAFLREYAQAHTKLSELGAKFVPAQGIYV Jatropha_curcas_XP_012078303_ QLKSAREDIKELLKSTFCHPILVRLGWHDAGTYNKN--IEEWPKRGGANG-SLRFEIELKHAANAGL-VNALKLLQPIKDKYSGVTYADLFQLASATAIEEAGGPK--L--PMKYGRVDVS--APEDC--PEEGR--------LPSAGP---------PSPA--------------DHLREVFY-RMGLNDKEIVALSGAHTLGRSRPDRSGW-------GKPETKYTKNG--------------PGAP-GGQSWTVEWLKFDNSYF---KDIK-----------AKKDEDLLVLPTDAVLFDDPSFRVYAEKYAEDKEAFFKDYAEAHAKLSNLGAKFDPPEGIVL Karenia_brevis_comp115489_c0_seq1 ALKKAEALIEALVKDISCAPILVRLAWHDSGTYDMANAGKPWPEAGGAIG-SIRTDHEINAGANAGLQKALTAYLKPIKDKVPSVSWADLIQLASATAIKVAGGPT--I--PMKYGRVDGE---PKEKQEPNFG---------LPDALP----PFGGPLKEK----------EDPAEHLRYVFY-KYGMDDKDIVTLSGAHTIGRAFADRSGTVQEGAGMKAG-TEYTKSG---CPFAGNSRTL------GGRSWTKNWLSFDNSYF---ADMT------------KADPSCIAFPTDKVLMTDPGFKPHFDLFAKDEKAFFEAYKQSHKKLSELGSKFSPPEGITL Karenia_brevis_comp118584_c0_seq1 QLKALKSDLWEFVDKMNCNPILIRLAWHDSGTYHKD--ITTWPERGGANG-SIIYTPELNRGANAGL-NKAKRFLEPFKEDYPLVSWADLLQMASAVSVEHAGGPA--I--QMRYGRQDVG--GPEDC-PPETSR-GTGANAGLPDAEA----PFG--CGGK-----------TAADHLRNIFY-RMGFNDQQIVALSGVHTLGRAFKERTGLVPEGYGEAKA-NMFTKAAG-ACPIRYDGKPG-IGMP-GGRSWTKKWLKFDNSYF---------LEYKE------KNDKLLWFSTDAALHEDPGFVPHFRRYGADQDVFFVEYAEAHKMLSELGSKFEPAEGIKI Karenia_brevis_comp142743_c1_seq1 -----------LVKEKSCAPILVRLAWHDSGTYDKSLADKPWPNAGGAIG-SILTPHEMDAGPNAGLKKGYTAYLTPIKEAVPDISWADLIQLASVTGIEVEGGPK--I--PMKYGRVDGV---PTEKQPPPFG---------LPDAFP---------SDPV--------------AHLKFVFY-KYNMDDKDIVTLSGAHTLGRAFKDRSGTVAEGQFGPY--TEYTKRG---CPMMSNSVTA------GGRSWTKNWTKFDNSYF---TDMA------------KEDPACVAFPTDKCLMTAPEFKPYFDEFAKDQNAFFEAYKVSHKKLAELGCKFDPPEGIT- Karlodinium_veneficum__comp13947_c0_seq1 SLRAAEKDLREFINTTNCNPILVRLAWHDSGTYDQR--IKEFPQRGGANG-TIRFDPELSFGANAGL-DRAIGYLEKIHKKYPDISWADLIQLGSATAVEMAGGPK--I--DMTYGRISAG--PNDAV--ASESREGFGGNAGLPDALPGDDGKFG--CGET-----------TAAAHLRNVFGKKMGFTDQEIVAISGAHTIGRAFKERSGACPFGYTDSKA-SKYTKST---CIARADGKEG-VGIP-GGAAWTKNWLKFDNSYY---NSYS------------TTDKDLLWFPTDAALHQDAAFKPYFEKYAKDQAAFFADYAKAHKKLSELGSKFDPPEGFKI Karlodinium_veneficum_comp8423_c0_seq1 QLRACQKELKELINKLNCNPILVRLAWHDSGTFDQR--IADFPQRGGANG-AIRFDPEMNMGANAGL-AKARGYLEKVKAKYPKVTWADLIQMASATAIECAGGPK--I--PMKYGRVDVT--GPEQC-VGPTSREGFGGNAGLPDAKP----PFG--CGAS-----------SAAQHLRNVFTKKMGFTDQEIVALSGAHTIGRAFKDRSGTCPFGYG-GASASKYTKAD---CIVRCDGKAG-IGME-GGAGWTKNWLTFDNSYY---SAYK----------EAMSDDQLLWFPTDEALHTDEAFKVHFYKYAQDKQAFFDDYAKAHKKLSELGCKFEPAEGITL Kryptoperidinium_foliaceaum_comp225609_c11_seq4 QLKALRKDLFEFVEKQNCNPIFVRLAWHDSGTYDKA--RTEFPDRGGANG-SIIYAPEINHGANNGL-NKAVRFLEPYKAEYPLVSWADLIQMASAVSIEHAGGPK--I--AMKYGRQDVS--GPEGC--PDTASRNTAANAGLPDAAM----PFG--CGAQ-----------DAPTHLRNVFH-RMGFNDQEIVALSGAHTIGRAFKERSGT-------------------------------------------------------------------------------------------------------------------------------------- Kryptoperidinium_foliaceum_comp223782_c2_seq28 ------------------------------------------------------------YGANAGL-NKAVDYLKPIKAKYPGVSWADLIQMASACAIEATGGPA--I--PMKYGRVDAK--DGSAC-PAPTSR-GTAGNAGLPDAMG----PFG--CGAP-----------DAATHLRNIFY-RMGFDDEGIVALSGAHTLGRAFKERSGTVENGYGDASA-TKYTKSM---CPVRHDGKPG-VGMA-GGKSWTPNWLTFDNSYF---QYLK-----------RGADEDLIWFPTDEALHKDPKFKPYFDKFADSQPAFFEAYARAHKKLSELGSQFEPAEGFAL Medicago_truncatula_XP_003602044_ QLKSAREDIKELLKTKFCHPLLIRLGWHDAGTYNKN--IEEWPQRGGANG-SLRFEVELKHGANAGL-VNALKLLQPIKDKYSGVTYADLFQLASATAVEEAGGPK--I--PMKYGRVDVT--GPEQC--PEEGR--------LPDAGP---------PSPA--------------DHLRQVFY-RMGLNDKEIVALSGAHTLGRSRPDRSGW-------GKPETKYTKDG--------------PGAP-GGQSWTAQWLKFDNSYF---KDIK-----------EKKDEDLLVLPTDAALFDDPSFKVYAEKYAVDQEAFFKDYAEAHAKLSNLGAKFEPAEGVVV Nicotiana_tabacum_BAA78552_thylakoid_bound_APX QLKSAREDIKELLKNTFCHPILVRLGWHDAGTYNKN--IEEWPQRGGANG-SLRFEVELKHGANAGL-VNALKLLQPIKDKYANVTYADLFQLASATAIEEAGGPK--L--PMKYGRVDVS--APEEC--PEEGR--------LPDAGP---------PSPA--------------SHLRDVFY-RMGLNDKEIVALSGAHTLGRSRPERSGW-------GKPETKYTKDG--------------PGNP-GGQSWTVQWLKFDNSYF---KDIK-----------ERRDEDLLVLPTDAALFEDSSFKEYAEKYAVNQDVFFKDYAEAHAKLSNLGAKFDPPEGFSI Nicotiana_tabacum_XP_016437245_APX6_chloroplastic_isoformX2_ QLKSAREDIKELLKNTFCHPILVRLGWHDAGTYNKN--IEEWPQRGGANG-SLRFEVELKHGANAGL-VNALKLLQPIKDKYANVTYADLFQLASATAIEEAGGPK--L--PMKYGRVDVS--APEEC--PEEGR--------LPDAGP---------PSPA--------------SHLRDVFY-RMGLNDKEIVALSGAHTLGRSRPERSGW-------GKPETRYTKDG--------------PGNP-GGQSWTVQWLKFDNSYF---KDIK-----------ERRDEDLLVLPTDAVLFEDSSFKEYAEKYAVNQDVFFKDYAEAHAKLSNLGAKFDPPEGSSI Nicotiana_tabacum_XP_016469841_APX6_chloroplastic_isoformX1_ QLKSAREDIKELLKNTFCHPILVRLGWHDAGTYNKN--IEEWPQRGGANG-SLRFEVELKHGANAGL-VNALKLLQPIKDKYANVTYADLFQLASATAIEEAGGPK--L--PMKYGRVDVS--APEEC--PEEGR--------LPDAGP---------PSPA--------------SHLRDVFY-RMGLNDKEIVALSGAHTLGRSRPERSGW-------GKPETKYTKDG--------------PGNP-GGQSWTVQWLKFDNSYF---KDIK-----------ERRDEDLLVLPTDAALFEDSSFKEYAEKYAVNQDVFFKDYAEAHAKLSNLGAKFDPPEGFSI Nicotiana_tabacum_pdb_1IYN_BAC10691_stromal_ QLKSAREDIKELLKTKFCHPIMVRLGWHDAGTYNKN--IEEWPQRGGANG-SLRFDVELKHGANAGL-VNALNLLKPIKDKYSGVTYADLFQLASATAIEEAGGPK--I--PMKYGRVDVT--EPEQC--PEEGR--------LPDAGP---------PSPA--------------QHLRDVFY-RMGLNDKEIVALSGAHTLGRSRPDRSGW-------GKPETKYTKDG--------------PGAP-GGQSWTAQWLKFDNSYF---KDIK-----------ERRDEDLLVLPTDAALFEDPSFKVYAEKYAADPEAFFKDYAEAHAKLSNLGAKFGPAEGFSL Oxyrrhis_marina_LB1974_c41711_g1_i1 -----KKDLLAFIDKENCGPILVRLAWHDSGTYDQR--ISDFPQRGGANG-AIIHEPEMSMGANNGL-RKGFGYLKQFKEKYPTISWADLIQLASACSIEAMGGPK--I--NMRYGRVDVA--GPQDC-VGPKSREGFGGNAGLPDAKP----PFG--CGAP-----------TASQHLRNVFTKKMGFTDQEIVALSGAHTIGRAFKERSGTCPFGYMDNGA-SKYTKST---SVARKDGKTG-IGMA-GGAAWTKNWLTFDNSYF---KDYK------------ANDGDLLWFDTDKALHTDPAFQPYFQKYAEDEKAFFADYAKAHKKLSELGSKF-------- Oxyrrhis_marina_unk_c89384_g1_i1 -----KKDLLAFADKENCGPIFVRLAWHDSGTYDQR--ISDFPQRGGANG-AIMHEPEMGMGANNGL-RKAITYLKPLKEKYPTISWADLIQLASACGIEAMGGPK--I--NMRYGRVDVA--GPQDC-VGPKSRAGFAGNAGLPDAKP----PYG--CGAS-----------TAAQHLRNVFTKKMGFTDQEIVALSGAHTIGRAFKDRSGTCPFGYSDNGA-SKYTKSS---CVARKDGKAG-VGMP-GGAAWTKNWLAFDNAYF---KDYK------------ANDGDLLWFETDKALHTDPGFQPFFQKYAEDEKAFFADYALAHKKLSELGSKF-------- Perkinsus_marinus_ATCC_5098_XP_002767285_3 DIRAMADELTAMIDRLNCDPIIVRFAWHDSGTYDKS---LPWPQCGGASG-GIIYDVELSDAANAGL-PKALKFLQPIKAKYPGVSWADTIQLASACALKHCGGPD--IIPYMKFGRKDIS--GPEEC--PPAGR--------LPMPEG--------------------------ADHLRKIFY-RMGFNDQEIVALSGGHTIGRAFKDRSGTVEEAAGRG---TQYTNGS---EVARLDGKEG-IGMK-GGRSWCRKWLKFDNEYF---INIM-----EDAKSKSKVDNGLLVLKSDNCLVTDPSFRPYVEVYAKDNNKFLCDYAQAHIKLSELGCQYIVDGGIKV Perkinsus_marinus_ATCC_50983_XP_002767290_ DLHAMADDLTAMIDELNCDPIIVRFAWHDSGTYDKS---LPWPECGGANG-GIRFDAELKHEANAGL-AKGRRFLEPIKAKYPGVSWADTIQLASACALKHCGGPD--ILPNMKFGRKDIS--GPEEC--PPEGR--------LPSPDG-------------------------AADHLRKIFY-RMGFNDQEIVALSGGHTIGRAFKDRSGTVEEAAGRG---TQYTNGS---EVARLDGKEG-IGMK-GGRSWCRKWLKFDNEYF---INIM-----EDAKKDSDEDNGLLVLKTDNALVTDPFFREYVELYAEDNDKFLEDYEKAHIKLSELGSEFIVDGGIKM Perkinsus_marinus_ATCC_50983_XP_002777381_ --------------------------------------------CGGASG-GIIYDVELSDAANAGL-PKALKFLQPIKAKYPGVSWADTIQLASACALKHCGGPD--IIPYMKFGRKDIS--GPEEC--PPAGR--------LPMPEG--------------------------ADHLRKIFY-RMGFNDQEIVALSGGHTIGRAFKDRSGTVEEAAGRG---TQYTNGS---EVARLDGKEG-IGMK-GGRSWCRKWLKFDNEYF---INIM-----EDAKSKSKVDNGLLVLKSDNCLVTDPSFRPYVEVYAKDNNKFLCDYAQAHIKLSELGCQYVVDGGIK- Phaeodactylum_tricornutum_CCAP_105_XP_002181744_5 DLEGAQTMIDKIIDDTNANPVFVRLAWHDSGTFDVN-VEKEWPASGGAIG-SIRFDPEINHGANAGL-SGAVKLLEPVKESFPDVSFADIFQMASARSIELAGGPK--I--DMKYGRVDAS--GPENC--SAEGN--------LPDAEP---GPDGKYGGPG---GSASTEDKTPNGHLRKVFY-RMGLNDEEIVALSGAHSFGRAYKDRSGL-------GAEKTKFTDGS---KQIRADGKEAKYNP--GGSAWTKNWLVFDNSYF---TTIP----------DESADPELLKLSTDKTLFGDEDFKPFAEKFRDSQDEFFASYAKAHKKLSELGSKFEAVE---- Phaeodactylum_tricornutum_CCAP_1055XP_002181742_ ALSSAKEMIDALILEKNCGPIMVRVGWHDSGTFDKN-VSGAWPSAGGAVG-SIRFDPEITHGANAGL-INAIKLLEPIKEANPDVSYADIFQMASARSIELAGGPR--I--DMKYGRIDSN--GPENC--SKEGN--------LPDAEP----------GSN----------GMYAGHLRKVFY-RMGLNDEEIVALSGAHTFGRAYKNRS---------------------------------------GGSSWTENFLIFDNSYY---KVIP----------DESADPELLKLSTDKVVFMDDGFRPFAEKFRDSQDAFFESYAKAHKKLSELGSNFDPSEGISM Phoenix_dactylifera_XP_017696878_ QLKSAREDIRGLLNTSFCHPILVRLGWHDAGTYDKN--IAEWPQRGGANG-SLRFEIELKHAANAGL-VNALKLLQPIKDKYSGVTYADLFQLASATAIEEAGGPK--I--PMKYGRVDVS--GPEQC--PPEGK--------LPDAGP---------PSPA--------------GHLRDVFY-RMGLNDKEIVALSGAHTLGRSRPERSGW-------GKSETKYTMDG--------------PGAP-GGQSWTVQWLKFDNSYF---KDIK-----------ERRDEDLLVLPTDAVLFEDPSFKVYAEKYAEDQDAFFKDYAEAHAKLSNLGAKFDPPEGISI Populus_euphratica_XP_011027505_ QLKSAREDIKELLKSKSCHPILVRLGWHDAGTYNKN--IEEWPRRGGANG-SLRFDIELKHAANAGL-VNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPK--I--PMKYGRVDVS--APEEC--PEEGR--------LPAAGP---------PKPA--------------DHLREVFY-RMGLNDKEIVALSGAHTLGRSRPERSGW-------GKPETKYTKNG--------------PGAP-GGQSWTAEWLKFDNSYF---KDIK-----------QRKDDDLLVLPTDAALFEDPSFKEYAEKYAEDQEAFFKDYAEAHAKLSNLGAKFDPKEGIVL Scrippsiella_trochoidea_comp104639_c0_seq1 ALVKAKGLCKELVESRSCAPILVRTAWHDAGTYDKANAGKPWPEAGGAIG-SIRTDHEINAGPNAGLKKAVAMYLQPIKSQVPEISWADLIQMAGATAVEVAGGPK--I--PMKYGRVDGV---PADPAPPPFG---------LPDAKP----PFGGPSPQ------------DPAAHLRYVFY-KYGMDDKDIVALSGAHTIGRAFKDRSGTVEEGYLGG---TAYTKRG---SPSLEKSETA------GGRSWTKNWLKFDNSYF---TDMA------------KNDPDCITFPTDAVLMTDAGFKPHFDLFQKDQAAFFAAYAQSHKKLSELGSKFEPAAGIVG Scrippsiella_trochoidea_comp104639_c0_seq2 ----------ELVVSKSCAPILVRTAWHDSGTYDKANAEKPWPEAGGAIG-SIRTDHEINAGPNAGLKKAITMYLKPIKDQVPEISWADLFQMASATAIEVAGGPK--I--PMKYGRVDGI---PASPAPPPFG---------LPDAKP----PFGGPSPQ------------DPAAHLRYVFY-KYGMDDKDIVALSGAHTIGRAFKDRSGTVEEGYLGG---TAYTKRG---SPSLEKSETA------GGRSWTKNWLKFDNSYF---TDMA------------KNDPDCITFPTDAVLMTDAGFKPHFDLFQKDQAAFFAAYAQSHKKLSELGSKFEPAAGI-- Scrippsiella_trochoidea_comp114700_c0_seq1 -----KTELLKFIDETNCAPIMVRLAWHDSGNYDKS--VAAWPACGGANG-SIRFEPEIEYPANAGL-PKALNYLKQFKEKYPAVSWADLIQMASACAIEATGGPK--I--PMKYGRVDAA--DGSAC-PEPTSR-GTSHSAGLPDPAP----PFP--CGAQ-----------DAPTHLRNIFY-RMGFDDEGIVALSGAHTLGRAFKERSGATEHGYGDAKA-SKYTGSG---CPVRHDKKAG-VGMP-GGKAWTQNWLTFDNSYY---QYLQ-----------RGHDDDLLWFPTDAALHQDEKFKPYFEKFATSQDAFFEAYCRAHKKLSELGSKFEPAEGITL Scrippsiella_trochoidea_comp83567_c2_seq1 QLKAARKDMFEFINDQNCNPIMVRLAWHDSGTYDKT--KTAFPDMGGANG-SIIYAPEINHGANNGL-NKAVNFLKPFKSDYPLISWADLIQMASAVAIEHAGGPR--I--DMIYGRADVD--GPEAC-PGRTSR-GTGDNAGLPDAEP----PYG--CKAV-----------DAATHLRNIFH-RMGFSDQEIVALSGAHTLGRAFKERSGTVPEGYGEANA-CPYTKAVGL-CPVRHDGAAG-VGMP-GGRSWTKQWLKFDNSYF---RD------YVA------KDPHLAWFSTDRALHEDPEFRKTFLIYKEDQAAFFKDYAAAHKKLSELGSKFSPDGGIKI Scrippsiella_trochoidea_comp94602_c0_seq1 -LRHAKEEIKAMIDTKNCNPIMVRLAWHDSGTYDQR--IQEWPQRGGASG-GNWFPEQLDFEANAGL-EKARDFLKPILEKYPHVGQADLIQLASAVAIEHAGGPK--I--DMKYGRLWVA--AGDCC-VKSDSREGFSGNAGLPDAGP----PFG--CGAS-----------TAAEHLRNVFGKKMGFTDQEIVALSGGHTIGRIFKERSGACPFGYGNAAA-SKYTKED---CIARRDGGKG-IGMA-GGGAWTKNWLTFDNTYF--TQPKDER--GYP------LDKDLVWLETDACLWTDPIFKQYVETYTKDQDAFFRDYAKAHKKLSELGCKFDPPQGLKL Setaria_italica_XP_004977222_ ELRGAREDVKQLLKTTSCHPILVRLGWHDAGTYDKN--IAEWPKCGGANG-SLRFEIELKHGANAGL-VNALKLIQPIKDKFSGVTYADLFQLASATAIEEAGGPK--I--PMIYGRVDIT--APEQC--PPEGR--------LPAAGP---------PSPA--------------EHLREVFY-RMGLNDKEIVALSGAHTLGRARPERSGW-------GKPETKYTKNG--------------PGAP-GGQSWTSQWLKFDNSYF---KDVK-----------ERRDEDLLVLPTDAVLFEDSSFKVYAEKYAEDQDAFFKDYAEAHAKLSNLGAKFDPPKGISL Symbiodinium_sp_clc_MMETSP1123_1_contig_26331 EYVTCKEELLKFIDENNCAPIMVRLAWHDSGNFDKR--ISSWPECGGANA-SIIHEPEISFGANAGL-TKAVNFLKPFKAKFPAVSWADLIQMASACAIQAAGGPA--I--PMRYGRVDVK--DGSAC-PGRTSR-GTADNAGLPDAMA----PFG--CGAK-----------DPATHLRNIFN-RMGFEDEEIVALSGAHTLGRAFKERSGTVECGYGDAKA-STYTKSG---CPVRHDGKAG-VGMA-GGKSWTKNWLTFDNSYF---QFLK-----------NPKDDALLWLPTDRALHEDAKFKVFFDRFADSKEAFFEAYSKVHKKLSELGAKFEPAEGFAL Symbiodinium_sp._clc_MMETSP1123_1_contig_17332 QLTALWDDLWKFVDKMNCNPIFLRLAWHDAGTYDKS--KPDFGDRGGANG-SIRFSPEITMGANNGL-DKAVKFLEPFKADYPLVSYADLYQMAAAVGIEHAGGPK--I--AMKYGRKDAA--GPDAC-PAQTSR-GTAANAGLPDAEKGPSGTYG--CGAT-----------DPATHLRNIFY-RMGFDDKGIVALSGAHTIGRAFKERSGTVTQGYGENSG-CPYTRAMPVSCPIRHDGKMG-VGMP-GGKSWTSKWLKFDNEYF---QPAV----YEE------SDKNLLWLSTDRCLHQDESFKKYFMQYREDQAAFFKDFAEAYKQLSEQGAEFEPADGLSI Symbiodinium_sp._clc_MMETSP1123_1_contig_2706 QLRACKKELAAFIDSKNCHPIMVRLAWHDSGTYDQR--IKDFPARGGANG-AIRFDPEMNFGANAGL-DKARGFLEDFAKKYPLISWADLIQLASATAIECAGGPA--I--PMKYGRVAVT--SGSEC-VKGDSREGFGGNAGLPDAKP----PFG--CGAT-----------TAAQHLRNVFTKKMGFTDQEIVALSGAHTIGRAFKERSGTCPFGYGEQAA-SNFTKSA---CIARKDQKAG-VGMV-GGASWTKNWLTFDNSYF---KDYK------------QKDAHLLWFPTDEALHTDPAFKKYFDLYAADQAAFFKDYAQAHKKLSELGSKFEPEGGLMI Thalassiosira_pseudonana_CCMP1335_XP_002291359_ DLDGAQAAIDEIIKEKNCGPVFVRLAWHDSGTFDVN-INEAWPAAGGAIG-SIRFEPEINHGANAGL-AGAVKLLEPVKEAFPEVSYADIFQMASARSIELAAGPK--I--DMKYGRKDAT--SPEQC--SPEGN--------LPDAEA---GPEGKFGGTS---GTKPTEDTSVAWHLRKVFY-RMGLGDEEIVALSGAHTFGRAYEDRSGL-------GAWKTKFTDGS---KVKLADGSETDKYTP-GGSPWVENWLVFDNSYF---TTIP----------DASTDEELLKLTSDKILFEDHGFKPFAEKFRDDKDAFFASYAKAHKALSELGSEFE------- Unknown_diatom_Oxyrrhis_marina_LB1974_c35849_g1_i1 ----------KIIDDTNANPVFVRLAWHDSGTFDVN-VEKEWPASGGAIG-SIRFDPEINHGANAGL-SGAVKLLEPVKESFPDVSFADIFQMASARSIELAGGPK--I--DMKYGRVDAS--GPENC--SAEGN--------LPDAEP---GPDGKYGGPG---GSASTEDKTPNGHLRKVFY-RMGLNDEEIVALSGAHSFGRAYKDRSGL-------GAEKTKFTDGS---KQMRADGKEAKYNP--GGSAWTKNWLVFDNSYF---TTIP----------DESADPELLKLSTDKTLFGDEDFKPFAEKFRDSQDEFFASYAKAHKKLSELGSKFEAVE---- Vitrella_brassicaformis__c1399_g1_i1 ELLKCRDALRDLIDETAAFGILIRAAWHDAGTYDAK-KEGEWPKKGGANG-SIRFPEETSHAANAGL-DNAIKLLQPIKDRFQSVSWADILQMASAVAIEMAGGPK--I--AMQYGRVDVD--SPEDC--PKEGN--------LPDGAA----PFG--DGAE-----------TPAQHLRNVFY-RMGLDDQEIVALSGAHTVGRAWKNRSGF-----GRGEEGTNYTTGE---HTDLRQDGKGYYGKE-GGMSWTPRWLLFDNSYF---TAVN-----------ADDDPELLKLQTDTCLFADEAFRPYALKYADSQEAFFADYSAAHKKLSELGSKFDPPEGITL Vitrella_brassicaformis_c15866_g1_i1 RLQECQEVLKKMVDEVNCHPILIRLAWHDSGTYDAKMPMTDWPNCGGANG-SIRFEPEINHGANAGL-QNALNLLKPIKASFPEISWADLMQMASATAIEVAGGPK--I--PMRYGRLDAW--APKNC--PKEGN--------LPAGGA---------PWPGSA--------STPQQHLRDVFH-RMGLSDKDIVALSGAHTLGRAYKFRSGF-----GLDEKGCKYTTGK---CLVRKDGKEG-HGQTDGGQSWTPKWLSFDNSYF---TYCK-----------QKGGEDLLSLDTDQCLFEDAAFKPFAEKY--------------------------------- Vitrella_brassicaformis_c15866_g1_i1_2 -----RAELAKLINETNCHPIMVRLAWHDAGTYDCK------TAVGGANG-SIRFEPEINHGANAGL-KKGLELLQLIKDKFLDVSWADLIQMASATAIELAGGPR--I--PMKYGRLDVF--GGADC--PPEGN--------LPAGGA---------PWPAGAD--------GPQKHIRDIFY-RMGFGDKEIVALSGAHTLGRARTDRSGF-----GAGDEGSKYTAGD---VKPRGDGQEG-YGNP-GGKSWTPNWLKFDNSYF---TVLK-----------DKMNGDLLALDTDKCLFEDAAFKPFAEKYAADESAFFKDYAMAHKALSELGSKWEPADGMYI Vitrella_brassicaformis_c15866_g1_i2 RLRQCKEALSKLIDEKNCHPIMVRLGWHDAGTFTKAIGIEHWPRCGGANG-SIRFEPEIAHGCNAGL-AKALELLQPIKKEFFDVSWADLMQMASATAIEVAGGPK--I--PMRYGRLDAW--APKNC--PKEGN--------LPAGGA---------PWPGSA--------STPQQHLRDVFH-RMGLSDKDIVALSGAHTLGRAYKFRSGF-----GLDEKGCKYTTGK---CLVRKDGKEG-HGQTDGGQSWTPKWLSFDNSYF---TYCK-----------QKGGEDLLSLDTDQCLFEDAAFKPFAEKY--------------------------------- Vitrella_brassicaformis_c15866_g1_i3 -----RAELAKLINETNCHPIMVRLAWHDAGTYDCK------TAVGGANG-SIRFEPEINHGANAGL-KKGLELLQLIKDKFLDVSWADLIQMASATAIELAGGPK--I--PMKYGRIDAV--SGRDC--TPEGT--------LPAGGA---------PWPGKAK-------SAP-EHLRDIFY-RMGLGDKEIVALSGAHTIGRARTDRSGF-----GAGDECTKFTKGG---AKPRGDGKPG-MGHA-GGQSWTEKWLAFDNSYF---KVVK-----------DKVDGDLLALDTDKCLFEDAAFKPFAEKYAASQDDFFKDYAMAHKALSELGSKFIPAEGISI ; END; BEGIN TREES; TITLE APX_MLT; LINK TAXA = Taxa1; TRANSLATE 1 _Nicotiana_tabacum_BAA78553_stromal, 2 Nicotiana_tabacum_XP_016469841_APX6_chloroplastic_isoformX1_, 3 Nicotiana_tabacum_BAA78552_thylakoid_bound_APX, 4 Nicotiana_tabacum_XP_016437245_APX6_chloroplastic_isoformX2_, 5 Medicago_truncatula_XP_003602044_, 6 Nicotiana_tabacum_pdb_1IYN_BAC10691_stromal_, 7 Amborella_trichopoda_XP_006847188_, 8 Populus_euphratica_XP_011027505_, 9 Jatropha_curcas_XP_012078303_, 10 Elaeis_guineensis_XP_010930723_, 11 Phoenix_dactylifera_XP_017696878_, 12 Brachypodium_distachyon_XP_003578843_, 13 Setaria_italica_XP_004977222_, 14 Unknown_diatom_Oxyrrhis_marina_LB1974_c35849_g1_i1, 15 Phaeodactylum_tricornutum_CCAP_105_XP_002181744_5, 16 Thalassiosira_pseudonana_CCMP1335_XP_002291359_, 17 Phaeodactylum_tricornutum_CCAP_1055XP_002181742_, 18 Guillardia_theta_1_88361, 19 Vitrella_brassicaformis__c1399_g1_i1, 20 Vitrella_brassicaformis_c15866_g1_i1_2, 21 Vitrella_brassicaformis_c15866_g1_i3, 22 Vitrella_brassicaformis_c15866_g1_i2, 23 Vitrella_brassicaformis_c15866_g1_i1, 24 Scrippsiella_trochoidea_comp104639_c0_seq1, 25 Scrippsiella_trochoidea_comp104639_c0_seq2, 26 Karenia_brevis_comp142743_c1_seq1, 27 Karenia_brevis_comp115489_c0_seq1, 28 Crypthecodinium_cohnii_comp45534_c0_seq1, 29 Crypthecodinium_cohnii_comp39938_c0_seq1, 30 Scrippsiella_trochoidea_comp94602_c0_seq1, 31 Karlodinium_veneficum__comp13947_c0_seq1, 32 Symbiodinium_sp._clc_MMETSP1123_1_contig_2706, 33 Amphidinium_carterae_comp657_c0_seq1, 34 Karlodinium_veneficum_comp8423_c0_seq1, 35 Oxyrrhis_marina_LB1974_c41711_g1_i1, 36 Oxyrrhis_marina_unk_c89384_g1_i1, 37 Akashiwo_sanguinea_comp2849_c0_seq1, 38 Akashiwo_sanguinea_comp20110_c0_seq1, 39 Kryptoperidinium_foliaceaum_comp225609_c11_seq4, 40 Crypthecodinium_cohnii_comp17987_c1_seq1, 41 Scrippsiella_trochoidea_comp83567_c2_seq1, 42 Amhidinium_carterae_comp7140_c0_seq1, 43 Symbiodinium_sp._clc_MMETSP1123_1_contig_17332, 44 Akashiwo_sanguinea_comp38740_c0_seq1, 45 Karenia_brevis_comp118584_c0_seq1, 46 Akashiwo_sanguinea_comp16595_c0_seq1, 47 Symbiodinium_sp_clc_MMETSP1123_1_contig_26331, 48 Amphidinium_carterae_comp6815_c0_seq1, 49 Kryptoperidinium_foliaceum_comp223782_c2_seq28, 50 Crypthecodinium_cohnii_comp40137_c0_seq13, 51 Scrippsiella_trochoidea_comp114700_c0_seq1, 52 Hematodinium_EST63350, 53 Perkinsus_marinus_ATCC_50983_XP_002767290_, 54 Perkinsus_marinus_ATCC_50983_XP_002777381_, 55 Perkinsus_marinus_ATCC_5098_XP_002767285_3; TREE 'tree 1+' = [&R] ((((((((((((((1:1.0E-6,2:1.0E-6):1.0E-6,3:1.0E-6):1.0E-6,4:0.010567):0.047382,(5:0.039925,6:0.036709):0.025468):0.013887,7:0.045788):0.009107,(8:0.045468,9:0.033586):0.044923):0.014341,(10:0.016066,11:0.016488):0.012693):0.023824,(12:0.05575,13:0.024335):0.048095):0.273332,((((((14:1.0E-6,15:0.003175):0.11043,16:0.174616):0.040925,17:0.226003):0.069097,18:0.08524):0.2828,19:0.410176):0.069934,((20:0.107057,21:0.082772):0.151779,(22:0.076328,23:0.07694):0.190483):0.077614):0.090483):0.083681,(((24:0.029467,25:0.020171):0.10313,(26:0.214494,27:0.181412):0.070405):0.072344,(28:0.206918,29:0.180471):0.090456):0.44738):0.036043,(((((((30:0.339259,31:0.221165):0.078575,32:0.135826):0.052152,(33:0.314757,34:0.103914):0.067109):0.021807,(35:0.035056,36:0.070681):0.149755):0.064149,(37:0.094433,38:0.043827):0.187541):0.106218,(((((39:0.107712,40:0.072111):0.065985,41:0.134861):0.037172,(42:0.101113,43:0.167316):0.147004):0.067274,44:0.223009):0.027356,45:0.231971):0.121973):0.021933,((((46:0.105769,47:0.119066):0.037963,48:0.24803):0.040819,49:0.070935):0.03573,(50:0.144429,51:0.13811):0.021544):0.192504):0.123813):0.136755,52:0.403901):0.409654,53:0.060198):0.097354,54:0.003948,55:1.0E-6); END;