#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 25, 2024; 13:19 GMT TreeBASE (cc) 1994-2008 Study reference: Patel N.R., Fawcett S., Sundue M.A., & Budke J.M. 2018. The evolution of perine moprhology in Thelypteridaceae. International Journal of Plant Sciences, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S23496] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=118; TAXLABELS Amauropelta_bergiana Amauropelta_cheilanthoides Amauropelta_consanguinea Amauropelta_linkiana Amauropelta_oppositiformis Amauropelta_pachyrhachis Amauropelta_rustica Amblovenatum_opulentum Ampelopteris_elegans Christella_acuminata Christella_arida Christella_crinipes Christella_dentata Christella_hispidula Christella_jaculosa Christella_latipinna Christella_molliuscula Christella_normalis Christella_ovata Christella_papilio Christella_parasitica Christella_patens Christella_procurrens Christella_subelata Christella_subpubescens Cyclogramma_auriculata Cyclogramma_flexilis Cyclogramma_omeiensis Cyclosorus_interruptus Glaphyropteridopsis_erubescens Glaphyropteridopsis_rufostraminea Goniopteris_abdita Goniopteris_cordata Goniopteris_hildae Goniopteris_lugubris Goniopteris_moranii Goniopteris_pennata Goniopteris_poiteana Goniopteris_reptans Goniopteris_tetragona Goniopteris_tristis Goniopteris_vivipara Macrothelypteris_oligophlebia Macrothelypteris_ornata Macrothelypteris_polypodioides Macrothelypteris_torresiana Macrothelypteris_viridifrons Meniscium_arborescens Meniscium_falcatum Meniscium_longifolium Meniscium_membranaceum Meniscium_reticulatum Meniscium_salzmannii Meniscium_serratum Mesophlebion_crassifolium Mesopteris_tonkinensis Metathelypteris_flaccida Metathelypteris_gracilescens Metathelypteris_hattorii Metathelypteris_laxa Metathelypteris_singalanensis Metathelypteris_uraiensis Oreopteris_limbosperma Oreopteris_quelpaertensis Parathelypteris_angulariloba Parathelypteris_angustifrons Parathelypteris_beddomei Parathelypteris_chinensis Parathelypteris_glanduligera Parathelypteris_japonica Parathelypteris_nevadensis Parathelypteris_nipponica Parathelypteris_noveboracensis Parathelypteris_simulata Phegopteris_connectilis Phegopteris_decursivipinnata Phegopteris_hexagonoptera Phegopteris_koreana Plesioneuron_archboldiae Pneumatopteris_truncata Pronephrium_articulatum Pronephrium_asperum Pronephrium_cuspidatum Pronephrium_lakhimpurense Pronephrium_nudatum Pronephrium_penangianum Pronephrium_simplex Pronephrium_triphyllum Pseudocyclosorus_esquirolii Pseudocyclosorus_subochthodes Pseudocyclosorus_tylodes Pseudophegopteris_aurita Pseudophegopteris_bukoensis Pseudophegopteris_cruciata Pseudophegopteris_hirtirachis Pseudophegopteris_levingei Pseudophegopteris_microstegia Pseudophegopteris_pyrrhorachis Sphaerostephanos_elatus Sphaerostephanos_heterocarpus Sphaerostephanos_polycarpus Sphaerostephanos_taiwanensis Sphaerostephanos_unitus Stegnogramma_griffithii Stegnogramma_himalaica Stegnogramma_latipinna Stegnogramma_pilosa Stegnogramma_pozoi Stegnogramma_sagittifolia Stegnogramma_tottoides Stegnogramma_wilfordii Steiropteris_decussata Steiropteris_glandulosa Steiropteris_leprieurii Steiropteris_polypodioides Thelypteris_confluens Thelypteris_palustris Trigonospora_ciliata ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M47761] TITLE Thelypteridaceae; LINK TAXA = Taxa1; DIMENSIONS NCHAR=7; FORMAT DATATYPE=Standard SYMBOLS= "0 1 2 3" MISSING=? GAP= -; CHARSTATELABELS 1 Perine_appression / appressed not_appressed, 2 _Macrostruture_shape / Broad_Folds Thin_crests, 3 Macrostructure_length / Conical Elongate, 4 Macrostructure_reticulatoin / Not_reticulate Reticulate, 5 Microstructure / Absent Present, 6 Microstructure_type / Spiculate Minute_crests Minute_folds Verrucae, 7 Perforations / Absent Present, ; MATRIX Amauropelta_bergiana 10110-1 Amauropelta_cheilanthoides 10110-1 Amauropelta_consanguinea 1011101 Amauropelta_linkiana 10110-1 Amauropelta_oppositiformis 10110-0 Amauropelta_pachyrhachis 10110-1 Amauropelta_rustica 10110-1 Amblovenatum_opulentum 1010100 Ampelopteris_elegans 1000100 Christella_acuminata 1010100 Christella_arida 1010101 Christella_crinipes 10000-0 Christella_dentata 11100-0 Christella_hispidula 10000-0 Christella_jaculosa 1110100 Christella_latipinna 1000100 Christella_molliuscula 10110-0 Christella_normalis 10100-1 Christella_ovata 10110-0 Christella_papilio 10000-0 Christella_parasitica 1010130 Christella_patens 1010101 Christella_procurrens 1110120 Christella_subelata 1111100 Christella_subpubescens 1110101 Cyclogramma_auriculata 1111100 Cyclogramma_flexilis 10000-0 Cyclogramma_omeiensis 10000-0 Cyclosorus_interruptus 1000100 Glaphyropteridopsis_erubescens 1011100 Glaphyropteridopsis_rufostraminea 10110-0 Goniopteris_abdita 10110-0 Goniopteris_cordata 10110-0 Goniopteris_hildae 1011100 Goniopteris_lugubris 11110-0 Goniopteris_moranii 11110-0 Goniopteris_pennata 11110-0 Goniopteris_poiteana 11110-0 Goniopteris_reptans 10110-0 Goniopteris_tetragona 11110-0 Goniopteris_tristis 1111100 Goniopteris_vivipara 11110-0 Macrothelypteris_oligophlebia 10110-1 Macrothelypteris_ornata 1011101 Macrothelypteris_polypodioides 10110-1 Macrothelypteris_torresiana 1011101 Macrothelypteris_viridifrons 1011100 Meniscium_arborescens 1010101 Meniscium_falcatum 1010100 Meniscium_longifolium 1010101 Meniscium_membranaceum 10001-0 Meniscium_reticulatum 1000121 Meniscium_salzmannii 1110121 Meniscium_serratum 1000100 Mesophlebion_crassifolium 11110-0 Mesopteris_tonkinensis 10100-1 Metathelypteris_flaccida 10110-0 Metathelypteris_gracilescens 1010121 Metathelypteris_hattorii 10110-1 Metathelypteris_laxa 10110-1 Metathelypteris_singalanensis 1010131 Metathelypteris_uraiensis 1010111 Oreopteris_limbosperma 1111110 Oreopteris_quelpaertensis 1000110 Parathelypteris_angulariloba 1111130 Parathelypteris_angustifrons 1111131 Parathelypteris_beddomei 1011121 Parathelypteris_chinensis 1111131 Parathelypteris_glanduligera 1011131 Parathelypteris_japonica 1011101 Parathelypteris_nevadensis 1111101 Parathelypteris_nipponica 1111121 Parathelypteris_noveboracensis 11110-1 Parathelypteris_simulata 1111121 Phegopteris_connectilis 1011130 Phegopteris_decursivipinnata 0------ Phegopteris_hexagonoptera 10100-0 Phegopteris_koreana 10000-0 Plesioneuron_archboldiae 1111100 Pneumatopteris_truncata 1000110 Pronephrium_articulatum 1010--0 Pronephrium_asperum 1111100 Pronephrium_cuspidatum 1110100 Pronephrium_lakhimpurense 1011100 Pronephrium_nudatum 1000110 Pronephrium_penangianum 1011110 Pronephrium_simplex 1110100 Pronephrium_triphyllum 1100100 Pseudocyclosorus_esquirolii 10000-0 Pseudocyclosorus_subochthodes 10000-0 Pseudocyclosorus_tylodes 10000-0 Pseudophegopteris_aurita 10110-0 Pseudophegopteris_bukoensis 10110-0 Pseudophegopteris_cruciata 10110-0 Pseudophegopteris_hirtirachis 10110-0 Pseudophegopteris_levingei 10110-0 Pseudophegopteris_microstegia 10110-0 Pseudophegopteris_pyrrhorachis 10110-0 Sphaerostephanos_elatus 10000-0 Sphaerostephanos_heterocarpus 10000-0 Sphaerostephanos_polycarpus 1010110 Sphaerostephanos_taiwanensis 10000-0 Sphaerostephanos_unitus 1000110 Stegnogramma_griffithii 10000-0 Stegnogramma_himalaica 10000-0 Stegnogramma_latipinna 10000-0 Stegnogramma_pilosa 10000-0 Stegnogramma_pozoi 10000-0 Stegnogramma_sagittifolia 10000-0 Stegnogramma_tottoides 10000-0 Stegnogramma_wilfordii 10000-0 Steiropteris_decussata 11110-0 Steiropteris_glandulosa 1111100 Steiropteris_leprieurii 1111110 Steiropteris_polypodioides 11110-0 Thelypteris_confluens 1000100 Thelypteris_palustris 1000100 Trigonospora_ciliata 1000100 ; END; BEGIN TREES; TITLE Thelypteridaceae_Bayes; LINK TAXA = Taxa1; TRANSLATE 1 Amauropelta_bergiana, 2 Amauropelta_cheilanthoides, 3 Amauropelta_consanguinea, 4 Amauropelta_linkiana, 5 Amauropelta_oppositiformis, 6 Amauropelta_pachyrhachis, 7 Amauropelta_rustica, 8 Amblovenatum_opulentum, 9 Ampelopteris_elegans, 10 Christella_acuminata, 11 Christella_arida, 12 Christella_crinipes, 13 Christella_dentata, 14 Christella_hispidula, 15 Christella_jaculosa, 16 Christella_latipinna, 17 Christella_molliuscula, 18 Christella_normalis, 19 Christella_ovata, 20 Christella_papilio, 21 Christella_parasitica, 22 Christella_patens, 23 Christella_procurrens, 24 Christella_subelata, 25 Christella_subpubescens, 26 Cyclogramma_auriculata, 27 Cyclogramma_flexilis, 28 Cyclogramma_omeiensis, 29 Cyclosorus_interruptus, 30 Glaphyropteridopsis_erubescens, 31 Glaphyropteridopsis_rufostraminea, 32 Goniopteris_abdita, 33 Goniopteris_cordata, 34 Goniopteris_hildae, 35 Goniopteris_lugubris, 36 Goniopteris_moranii, 37 Goniopteris_pennata, 38 Goniopteris_poiteana, 39 Goniopteris_reptans, 40 Goniopteris_tetragona, 41 Goniopteris_tristis, 42 Goniopteris_vivipara, 43 Macrothelypteris_oligophlebia, 44 Macrothelypteris_ornata, 45 Macrothelypteris_polypodioides, 46 Macrothelypteris_torresiana, 47 Macrothelypteris_viridifrons, 48 Meniscium_arborescens, 49 Meniscium_falcatum, 50 Meniscium_longifolium, 51 Meniscium_membranaceum, 52 Meniscium_reticulatum, 53 Meniscium_salzmannii, 54 Meniscium_serratum, 55 Mesophlebion_crassifolium, 56 Mesopteris_tonkinensis, 57 Metathelypteris_flaccida, 58 Metathelypteris_gracilescens, 59 Metathelypteris_hattorii, 60 Metathelypteris_laxa, 61 Metathelypteris_singalanensis, 62 Metathelypteris_uraiensis, 63 Oreopteris_limbosperma, 64 Oreopteris_quelpaertensis, 65 Parathelypteris_angulariloba, 66 Parathelypteris_angustifrons, 67 Parathelypteris_beddomei, 68 Parathelypteris_chinensis, 69 Parathelypteris_glanduligera, 70 Parathelypteris_japonica, 71 Parathelypteris_nevadensis, 72 Parathelypteris_nipponica, 73 Parathelypteris_noveboracensis, 74 Parathelypteris_simulata, 75 Phegopteris_connectilis, 76 Phegopteris_decursivipinnata, 77 Phegopteris_hexagonoptera, 78 Phegopteris_koreana, 79 Plesioneuron_archboldiae, 80 Pneumatopteris_truncata, 81 Pronephrium_articulatum, 82 Pronephrium_asperum, 83 Pronephrium_cuspidatum, 84 Pronephrium_lakhimpurense, 85 Pronephrium_nudatum, 86 Pronephrium_penangianum, 87 Pronephrium_simplex, 88 Pronephrium_triphyllum, 89 Pseudocyclosorus_esquirolii, 90 Pseudocyclosorus_subochthodes, 91 Pseudocyclosorus_tylodes, 92 Pseudophegopteris_aurita, 93 Pseudophegopteris_bukoensis, 94 Pseudophegopteris_cruciata, 95 Pseudophegopteris_hirtirachis, 96 Pseudophegopteris_levingei, 97 Pseudophegopteris_microstegia, 98 Pseudophegopteris_pyrrhorachis, 99 Sphaerostephanos_elatus, 100 Sphaerostephanos_heterocarpus, 101 Sphaerostephanos_polycarpus, 102 Sphaerostephanos_taiwanensis, 103 Sphaerostephanos_unitus, 104 Stegnogramma_griffithii, 105 Stegnogramma_himalaica, 106 Stegnogramma_latipinna, 107 Stegnogramma_pilosa, 108 Stegnogramma_pozoi, 109 Stegnogramma_sagittifolia, 110 Stegnogramma_tottoides, 111 Stegnogramma_wilfordii, 112 Steiropteris_decussata, 113 Steiropteris_glandulosa, 114 Steiropteris_leprieurii, 115 Steiropteris_polypodioides, 116 Thelypteris_confluens, 117 Thelypteris_palustris, 118 Trigonospora_ciliata; TREE Fig._S2 = [&R] (43:0.004007741,((46:0.002716076,47:0.001413587):0.005382909,(((((((((73:4.350201E-4,71:0.006304838):0.01001624,(((67:0.00521018,69:0.001716051):0.007189526,3:0.001829666):0.001791013,((1:0.0023958393,7:0.001287382,4:0.001845857,5:0.003134388):0.001325992,(2:0.002381142,6:0.006101458):0.004967393):0.002910185):0.004026426):0.003101531,66:0.010218246):0.008609556,((62:0.003891281,58:0.006073505):0.001216811,(61:0.007442254000000001,(57:0.0031252648000000003,(59:0.003782647,60:0.003812964):0.003193888):0.004893999):0.001746935):0.02101335):0.005145473,(((68:0.008863957,65:0.006428919):0.0073187600000000005,70:0.0086188687):0.01123775,(74:0.003932956,72:0.001691664):0.009048695):0.01557147):0.005409865,(((((((((84:0.005742298,86:0.007269256):0.010983581999999999,(((((((((13:0.0016431248,21:0.001001587,14:0.001064573):0.00136163,(17:0.003392951,23:0.01966376):0.00613816):0.002000955,(((11:0.003265068,16:0.001971101):6.654728E-4,24:0.002262391,25:0.00391731):6.615656E-4,12:0.004143528):0.001982696,15:0.002731484):6.486633E-4,20:0.003831832):0.001876182,10:0.00759039):0.003972032,((82:7.584788E-4,85:0.001767701):0.002415006,99:0.001565684):0.006980951,(8:0.01285941,(((89:4.785993E-4,90:0.00214354):0.004976514,91:0.003204909):0.005881471,81:0.011656712):0.002827022):0.001109782,((80:0.01001159,((102:0.002259441,100:0.002631855):0.0026028343,101:0.004229544):0.002953261):0.003467485,118:0.03355426):0.002172988):0.002421357,103:0.01259347):0.002520011,79:0.02111354):0.002070409,((87:0.008381665,88:0.001183072):0.007596115,83:0.009548466):0.002820275,56:0.008669862):0.002394755):0.001978136,(30:0.008412986,31:0.002930349):0.003911526):0.003292468,((19:0.001231595,18:0.0035080862):0.01378706,22:0.003981326):0.01199747):0.007176374,((((48:7.079551E-4,49:0.001664555,50:2.516758E-4,53:0.001835162):0.003866643,51:0.008080055):0.007774152,(52:0.001479387,54:0.001861694):0.013050366):0.00541481,((9:0.01048055,55:0.02527336):0.01256737,29:0.01804415):0.004053226):0.004552187):0.003221426,(((37:0.002974964,(36:3.346282E-4,39:5.394122E-4):0.009563575000000001):0.002362271,((34:4.022579E-4,33:0.001809156):0.008610623,32:0.005281767):0.008515543):0.002064437,((38:0.011050772,40:0.002252648):0.004881722,(41:0.003084786,35:0.0015133323,42:0.001347609):0.007276202):0.002172596):0.009441281):0.008277941,(((((108:0.003266494,110:0.004079785):0.003278175,107:0.002630893):0.001732167,(106:0.003947465,105:0.002564921):0.00520042):0.003150512,(109:0.003894775,(111:0.003000551,104:0.02140779):0.001448062):0.006595283):0.008673045,(26:0.005852585,(28:0.004565094,27:0.006750612):0.003243086):0.007732973):0.014956):0.001572097,(113:0.003218502,114:0.0090705389,115:0.009380751,112:0.01692917):0.01077228):0.01835666,(63:0.008737445,64:0.001509119):0.02046099):0.005344635):0.007121467,(117:8.220109E-4,116:0.001868943):0.02930903):0.01689787,(((77:0.0133907,75:0.0103009):0.003769369,(78:0.00468086,76:0.01222065):0.009155207):0.007776681,((((((94:6.038136E-4,95:0.003668472):0.004928302,97:0.0016142393):0.002520681,98:0.015374518799999999):0.002679567,93:0.0018609895):0.00172398,96:0.007050896):0.001554272,92:0.006947078):0.008962039):0.01300319):0.01547049,(44:0.006496985,45:0.005567164):0.002969136):0.007187874):0.004603169); END;