#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 19, 2024; 23:24 GMT TreeBASE (cc) 1994-2008 Study reference: Sundaresan N., Sahu A.K., Jagan E., & Pandi M. 2018. Evaluation of ITS2 molecular morphometrics effectiveness in species delimitation of Ascomycota – a pilot study. Fungal Biology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S23745] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=42; TAXLABELS 'Colletotrichum anthrisci CBS_125334' 'Colletotrichum chlorophyti CBS_142.79' 'Colletotrichum circinans CBS_111.21' 'Colletotrichum curcumae IMI_288937' 'Colletotrichum dematium CBS_115524' 'Colletotrichum dematium CBS_123728' 'Colletotrichum fructi CBS_346.37' 'Colletotrichum lilii CBS_109214' 'Colletotrichum lineola CBS_109228' 'Colletotrichum liriopes CBS_119444' 'Colletotrichum rusci CBS_119206' 'Colletotrichum spaethianum CBS_100063' 'Colletotrichum spinaciae CBS_108.40' 'Colletotrichum tofieldiae CBS_168.49' 'Colletotrichum truncatum CBS_112998' 'Colletotrichum truncatum CBS_125327' 'Colletotrichum truncatum CBS_136.30' 'Colletotrichum verruculosum IMI_45525' 'Leptosphaeria errabunda CBS_125978' 'Leptosphaeria macrocapsa CBS_640.93' 'Stagonosporopsis actaeae CBS_106.96' 'Stagonosporopsis ajacis CBS_176.93' 'Stagonosporopsis ajacis CBS_177.93' 'Stagonosporopsis andigena CBS_101.80' 'Stagonosporopsis andigena CBS_269.80' 'Stagonosporopsis astragali CBS_178.25' 'Stagonosporopsis caricae CBS_248.90' 'Stagonosporopsis chrysanthemi ATCC_10748' 'Stagonosporopsis crystalliniformis CBS_713.85' 'Stagonosporopsis cucurbitacearum PD_91.310' 'Stagonosporopsis dennisii CBS_135.96' 'Stagonosporopsis heliopsidis CBS_109182' 'Stagonosporopsis hortensis CBS_104.42' 'Stagonosporopsis hortensis CBS_572.85' 'Stagonosporopsis ligulicola var. inoxydabilis CBS_425.90' 'Stagonosporopsis loticola CBS_562.81' 'Stagonosporopsis lupini CBS_101494' 'Stagonosporopsis oculo-hominis CBS 634.92' 'Stagonosporopsis rudbeckiae CBS_109180' 'Stagonosporopsis trachelii CBS_379.91' 'Stagonosporopsis trachelii CBS_384.68' 'Stagonosporopsis valerianellae CBS_273.92' ; END; BEGIN TAXA; TITLE Taxa2; DIMENSIONS NTAX=41; TAXLABELS 'Leptosphaeria conoidea CBS_125977' 'Leptosphaeria doliolum CBS_125979' 'Leptosphaeria errabunda CBS_125978' 'Leptosphaeria etheridgei CBS_125980' 'Leptosphaeria macrocapsa CBS_640.93' 'Leptosphaeria pedicularis CBS_126582' 'Leptosphaeria rubefaciens CBS_223.77' 'Leptosphaeria sclerotioides CBS_144.84' 'Leptosphaeria slovacica CBS_125975' 'Leptosphaeria slovacica CBS_389.80' 'Leptosphaeria sydowii CBS_125976' 'Leptosphaeria veronicae CBS_126583' 'Leptosphaeria veronicae CBS_145.84' 'Peyronellaea alectorolophi CBS_132.96' 'Peyronellaea americana CBS_112525' 'Peyronellaea americana PD_80.1143' 'Peyronellaea anserina CBS_360.84' 'Peyronellaea arachidicola CBS_315.90' 'Peyronellaea aurea CBS_269.93' 'Peyronellaea australis CBS_444.81' 'Peyronellaea calorpreferens CBS_109.92' 'Peyronellaea coffeae-arabicae CBS 123380' 'Peyronellaea curtisii CBS_251.92' 'Peyronellaea curtisii PD_71.6' 'Peyronellaea eucalyptica CBS_377.91' 'Peyronellaea gardeniae CBS_302.79' 'Peyronellaea glomerata CBS_112448' 'Peyronellaea musae CBS_463.69' 'Peyronellaea obtusa CBS_377.93' 'Peyronellaea pinodella CBS_100580' 'Peyronellaea pinodella CBS_531.66' 'Peyronellaea pomorum CBS_115.67' 'Peyronellaea pomorum var. circinata CBS_285.76' 'Peyronellaea pomorum var. cyanea CBS_388.80' 'Peyronellaea pomorum var. pomorum CBS_539.66' 'Peyronellaea protuberans CBS_381.96' 'Peyronellaea sancta CBS_281.83' 'Peyronellaea subglomerata CBS_110.92' 'Peyronellaea zeae-maydis CBS_588.69' 'Plenodomus congestus CBS_244.64' 'Plenodomus lupini CBS_248.92' ; END; BEGIN TAXA; TITLE Taxa3; DIMENSIONS NTAX=39; TAXLABELS 'Boeremia crinicola CBS_109.79' 'Boeremia diversispora CBS_531.86' 'Boeremia exigua var. coffeae CBS_109183' 'Boeremia exigua var. exigua CBS_101150' 'Boeremia exigua var. forsythiae CBS_101197' 'Boeremia exigua var. forsythiae CBS_101212' 'Boeremia exigua var. heteromorpha CBS_101196' 'Boeremia exigua var. lilacis CBS_101206' 'Boeremia exigua var. linicola CBS_109.49' 'Boeremia exigua var. linicola CBS_112.28' 'Boeremia exigua var. populi CBS_100167' 'Boeremia exigua var. pseudolilacis CBS_101207' 'Boeremia exigua var. viburni CBS_100354' 'Boeremia foveata CBS_109176' 'Boeremia gilvescens CBS_101156' 'Boeremia hedericola CBS_366.91' 'Boeremia lycopersici CBS_101199' 'Boeremia lycopersici CBS_101200' 'Boeremia lycopersici CBS_109172' 'Boeremia noackiana CBS_101216' 'Boeremia sambuci-nigrae CBS_109170' 'Boeremia strasseri CBS_126.93' 'Boeremia telephii CBS_109175' 'Colletotrichum fructi CBS_346.37' 'Colletotrichum lilii CBS_109214' 'Plendomus lingam CBS_260.94' 'Plenodomus agnitus CBS_121.89' 'Plenodomus agnitus CBS_126584' 'Plenodomus chrysanthemi CBS_539.63' 'Plenodomus confertus CBS_375.64' 'Plenodomus congestus CBS_244.64' 'Plenodomus enteroleucus CBS_142.84' 'Plenodomus hendersoniae CBS_113702' 'Plenodomus hendersoniae CBS_139.78' 'Plenodomus influorescens CBS_143.84' 'Plenodomus lindquistii CBS_381.67' 'Plenodomus lupini CBS_248.92' 'Plenodomus pimpinellae CBS_101637' 'Plenodomus tracheiphilus CBS_127250' ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M58678] TITLE Boeremia_and_Plenodomus_ITS2_sequence_secondary_structure; LINK TAXA = Taxa3; DIMENSIONS NCHAR=250; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250] [ . . . . . . . . . . . . . . . . . . . . . . . . .] 'Boeremia crinicola CBS_109.79' LGCCLGLLCGRGDGLCRIILGLRDDIICRRGCIDIHQKKHELGLLGGGLG-IIIG-L-CL--CGC--D-IDI-EDH-K--H--I---N-HN-QIQHQQKIAANNQNALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AAAEI--A-D---I-I-II--K-NQND-IDIKHNQQKQHHNIQNHHKNE-E 'Boeremia diversispora CBS_531.86' LGCCLGLLCGRGDGLCRIILGLRDDIICRRGCIDIHQKKHELGLLGGGLG-IIIG-L-CL--CGC--D-IDI-EDH-K--H--I---N-HN-QIQHQQKIAANNQNALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AAAEI--A-D---I-I-II--K-NQND-IDIKHNQQKQHHNIQNHHKNE-E 'Boeremia exigua var. coffeae CBS_109183' LGCCLGLLCGRGDGLCRIILGLRDDIICRRGCIDIHQKKHELGLLGGGLG-LLLG-L-DI--CGC--D-III-HQH-I--H--Q---N-HN-QIDHQQKIAANNQNALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AAAEI--A-D---I-I-II--K-NQND-IDIKHNQQKQHHNIQNHHKNE-E 'Boeremia exigua var. exigua CBS_101150' LGCCLGLLCGRGDGLCRIILGLRDDIICRRGCIDIHQKKHELGLLGGGLG-IIIG-L-CL--CGC--D-III-EDH-K--H--I---N-HN-QIQHQQKIAANNQNALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AAAEI--A-D---I-I-II--K-NQND-IDIKHNQQKQHHNIQNHHKNE-E 'Boeremia exigua var. forsythiae CBS_101197' LGCCLGLLCGRGDGLCRIILGLRDDIICRRGCIDIHQKKHELGLLGGGLG-IIIG-L-CL--CGC--D-III-EDH-K--H--I---N-HN-QIQHQQKIAANNQNALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AAAEI--A-D---I-I-II--K-NQND-IDIKHNQQKQHHNIQNHHKNE-E 'Boeremia exigua var. forsythiae CBS_101212' LGCCLGLLCGRGDGLCRIILGLRDDIICRRGCIDIHQKKHELGLLGGGLG-IIIG-L-CL--CGC--D-III-EDH-K--H--I---N-HN-QIQHQQKIAANNQNALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AAAEI--A-D---I-I-II--K-NQND-ID-KHNQQKQHHNIQNHHKNE-E 'Boeremia exigua var. heteromorpha CBS_101196' LGCCLGLLCGRGDGLCRIILGLRDDIICRRGCIDIHQKKHELGLLGGGLG-IIIG-L-CL--CGC--D-III-EDH-K--H--I---N-HN-QIQHQQKIAANNQNALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AAAEI--A-D---I-I-II--K-NQND-IDIKHNQQKQHHNIQNHHKNE-E 'Boeremia exigua var. lilacis CBS_101206' LGCCLGLLCGRGDGLCRIILGLRDDIICRRGCIDIHQKKHELGLLGGGLG-IIIG-L-CL--CGC--D-IDI-EDH-K--H--I---N-HN-QIQHQQKIAANNQNALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AAAEI--A-D---I-I-II--K-NQND-IDIKHNQQKQHHNIQNHHKNE-E 'Boeremia exigua var. linicola CBS_109.49' LGCDIGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHELGLLGGGLG-IIIG-L-CL--CGC--D-III-EDH-K--H--I---N-HN-QIQHQQKIAANNQNALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AAAHK--N-Q---N-I-II--I-ADAD-ID-KHNQQKQHHNKDAH-KN--E 'Boeremia exigua var. linicola CBS_112.28' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHELGLLGGGLG-IIIG-L-CL--CGC--D-III-EDH-K--H--I---N-HN-QIQHQQKIAANNQNALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AAAHK--N-Q---N-I-II--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Boeremia exigua var. populi CBS_100167' LGCCLGLLCGRGDGLCRIILGLRDDIICRRGCIDIHQKKHELGLLGGGLG-IIIG-L-CL--CGC--D-III-EDH-K--H--I---N-HN-QIQHQQKIAANNQNALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AAAEI--A-D---I-I-II--K-NQND-IDIKHNQQKQHHNIQNHHKNE-E 'Boeremia exigua var. pseudolilacis CBS_101207' LGCCLGLLCGRGDGLCRIILGLRDDIICRRGCIDIHQKKHELGLLGGGLG-IIIG-L-CL--CGC--D-III-EDH-K--H--I---N-HN-QIQHQQKIAANNQNALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AAAEI--A-D---I-I-II--K-NQND-IDIKHNQQKQHHNIQNHHKNE-E 'Boeremia exigua var. viburni CBS_100354' LGCCLGLLCGRGDGLCRIILGLRDDIICRRGCIDIHQKKHELGLLGGGLG-IIIG-L-CL--CGC--D-III-EDH-K--H--I---N-HN-QIQHQQKIAANNQNALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AAAEI--A-D---I-I-II--K-NQND-IDIKHNQQKQHHNIQNHHKNE-E 'Boeremia foveata CBS_109176' LGCCLGLLCGRGDGLCRIILGLRDDIICRRGCIDIHQKKHELGLLGGGLG-IIIG-L-CL--CGC--D-III-EDH-K--H--I---N-HN-QIQHQQKIAANNQNALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AAAEI--A-D---I-I-II--K-NQND-IDIKHNQQKQHHNIQNHHKNE-E 'Boeremia gilvescens CBS_101156' LGCCLGLLCGRGDGLCRIILGLRDDIICRRGCIDIHQKKHELGLLGGGLG-IIIG-L-CL--CGC--D-III-EDH-K--H--I---N-HN-QIQHQQKIAANNQNALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AAAEI--A-D---I-I-II--K-NQND-IDIKHNQQKQHHNIQNHHKNE-E 'Boeremia hedericola CBS_366.91' LGCCLGLLCGRGDGLCRIILGLRDDIICRRGCIDIHQKKHELGLLGGGLG-IIIG-L-CL--CGC--D-IDI-EDH-K--H--I---N-HN-QIQHQQKIAANNQNALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AAAEI--A-D---I-I-II--K-NQND-IDIKHNQQKQHHNIQNHHKNE-E 'Boeremia lycopersici CBS_101199' LGCCLGLLCGRGDGLCRIILGLRDDIICRRGCIDIHQKKHELGLLGGGLG-IIIG-L-CL--CGC--D-III-EDH-K--H--I---N-HN-QIQHQQKIAANNQNALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AAAEI--A-D---I-I-II--K-NQND-ID-KHNQQKQHHNIQNHHKNE-E 'Boeremia lycopersici CBS_101200' IECCLGLLCGRGDGLCRIILGLRDDIICRRGCIDIHQKKHELGLLGGGLG-IIIG-L-CL--CGC--D-III-EDH-K--H--I---N-HN-QIQHQQKIAANNQNALLGGDAEDCGE--CGL-AIL--GRIA-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AAAEI--A-D---I-I-II--K-NQND-ID-KHNQQKQHHNKDAE-INHHE 'Boeremia lycopersici CBS_109172' LGCCLGLLCGRGDGLCRIILGLRDDIICRRGCIDIHQKKHELGLLGGGLG-IIIG-L-CL--CGC--D-III-EDH-K--H--I---N-HN-QIQHQQKIAANNQNALLGGDAEDCGE--CGL-AIL--GRIA-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AAAEI--A-D---I-I-II--K-NQND-IDIKHNQQKQHHNIQNHHKNE-E 'Boeremia noackiana CBS_101216' LGCCLGLLCGRGDGLCRIILGLRDDIICRRGCIDIHQKKHELGLLGGGLG-IIIG-L-CL--CGC--D-IDI-EDH-K--H--I---N-HN-QIQHQQKIAANNQNALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IE-N--QHAQ-HADE-IQQNN-AAAEI--A-D---I-I-II--K-NQND-ID-KHNQQKQHHNIQNHHKNE-- 'Boeremia sambuci-nigrae CBS_109170' LGCCLGLLCGRGDGLCRIILGLRDDIICRRGCIDIHQKKHELGLLGGGLG-IIIG-L-CL--CGC--D-IDI-EDH-K--H--I---N-HN-QIQHQQKIAANNQNALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AAAEI--A-D---I-I-II--K-NQND-IDIKHNQQKQHHNIQNHHKNE-E 'Boeremia strasseri CBS_126.93' LGCCLGLLCGRGDGLCRIILGLRDDIICRRGCIDIHQKKHELGLLGGGLG-IIIG-L-CL--CGC--D-IDI-EDH-K--H--I---N-HN-QIQHQQKIAANNQNALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AAAEI--A-D---I-I-II--K-NQND-IDIKHNQQKQHHNIQNHHKNE-E 'Boeremia telephii CBS_109175' LGCCLGLLCGRGDGLCRIILGLRDDIICRRGCIDIHQKKHELGLLGGGLG-IIIG-L-CL--CGC--D-III-EDH-K--H--I---N-HN-QIQHQQKIAANNQNALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AAAEI--A-D---I-I-II--K-NQND-IDIKHNQQKQHHNIQNHHKNE-E 'Colletotrichum fructi CBS_346.37' LGCCLGLLCGRGDGLCRIIICRRCDCICRRGCIDIHQKKHHIHKKHGG-G-C--CDL-R---CG---E-I-I-E-A-Q--H--K---N-HH-Q---QQIIAAAGGLAELGGC----GGRCCCL-CIC-GGREDDLCCLILGCGIRGIARC-IAADHKQKQHQNDIH-H-HNKKQ-H-HN-H--HHAI-KQKE-HQQHI-AAANQ-QD-D-D-AAI-II--I-IIAA-EEIKHNQQKQHHNIQNHHKN--E 'Colletotrichum lilii CBS_109214' LGCCLGLLCGRGDGLCRIIICRRCDCICRRGCIDIHQKKHHIHKKHGG-G-C--CDL-R---CG---E-I-I-E-A-Q--H--K---N-HH-Q---QQIIAAAGGLAELGGC----GGRCCCL-CIC-GGREDDCCCIILGCGIRGIARC-IAADHKQKQHQNIIH-H-HAKKQ-H-HN-H--HHAD-KQIK-HQQHI-AAANQ-QD-D-IAAAI-II--I-DIAAIEEIKHNQQKQHHNIQNHHKN--E 'Plendomus lingam CBS_260.94' LGCCLGLLCGRGDGLCRIIIGLADDDICRRGCIDIHQKKHELGLLGGGLG-IIIG-L-LC----CA-D-I-I-H-H----H---------N-QIQHQQKIEANNQNAILGGDAGCCGG--CRC-AIL--GGCD-I-GE-AGCGCRGDA---DAII-KKHQHQDIQI-I-H-K-Q-N-IEHI--KHKK-HHQA-IQQNIDAA-EA--DAD---I-I-II--I-AAHQ-IDIKHNQQKQHHNIQNHHKNE-E 'Plenodomus agnitus CBS_121.89' LGCCLGLLCGRGDGLCRIIIGLADDDICRRGCIIIHQKKHELALLGGGCG-LCLE-IID-IDD--A-D-I-I-E-E-------E---H-HN-QIDHQQKIAANNDNAILGGDAGCCGG--CRI-AIL--GGCD-I-GG-AGCGCRGDA---DAAI-KKHQHQDQQI-I-H-Q-Q-N-IEDI--KHKK-HHQA-DQQNIDAA-EA--D-D---I-I-IIIAI-DAHQ-IDIKHNQQKQHHNIQNHHKNE-E 'Plenodomus agnitus CBS_126584' LGCCLGLLCGRGDGLCRIIIGLADDDICRRGCIIIHQKKHELALLGGGCG-LCLE-IID-IDD--A-D-I-I-E-E-------E---H-HN-QIDHQQKIAANNDNAILGGDAGCCGG--CRI-AIL--GGCD-I-GG-AGCGCAGDA---DAAI-KDHQHQDQQI-I-H-Q-Q-N-IEDI--KHKK-HHQA-DQQNIDAA-EA--D-D---I-I-IIIAI-DAHQ-IDIKHNQQKQHHNIQNHHKNE-- 'Plenodomus chrysanthemi CBS_539.63' LGCCLGLLCGRGDGLCRIIIGLADDDICRRGCIIIHQKKHELGLLGGGLG-LLLG-L-CCADLGCD-D-I-I-EIH-QN-HHNQ---H-HN-QIDHQQKIAANNQNAILGGDAGCCGG--CR--GAL-LGGCC-I-GG-AGCGCRGDA---DAII-KKHQHQDQQI-H-H-K-QHN-DA-Q--KHKK-HHQA-IQQNIDAA-EA--D-D---I-I-----I-IAHQ-IDIKHNQQKQHHNIQNHHKNE-E 'Plenodomus confertus CBS_375.64' IECCLGLLCGRGDGLCRIIIGLADDDICRRGCIIIHQKKHELGLLGGGLG-LLLG-L-LCIDLGCE-D-I-I-EDH-KH-HNNK---H-HN-QIDHQQKIAANNQNAILGGDAGCCGG--CRI-GIL-LGGCD-I-GG-AGCGCRGDA---DAII-KKHQHQDKQI-I-H-K-Q-NNIE-Q--KHKK-HHQA-IQQNIDAA-EA--I-D---I-I-II--I-IAHQ-IDIKHNQQKQHHNIQNHH----- 'Plenodomus congestus CBS_244.64' IECCLGLLCGRGDGLCRIIIGLADDDICRRGCIDIHQKKHELGLLGGGLG-IAIG-L-CLGCLGCC-D-I-I-EHH-QNDH-DQ---N-HN-QIQHQQKIAANHQNAILGGDAGCCGG--CRL-A-L-CRGCD-I-GG-AECGCRGDA---DAII-KKHQHIDQQI-I-H-Q-KHN-DD-H--KHKK-HHQA-IQQNIDAA-EA--DEA---I-I-II-AI-DAHQ-IDIKHNQQKQHHNIQNHH----- 'Plenodomus enteroleucus CBS_142.84' LGCCLGLLCGRGDGLCRIIIGLADDDICRRGCIDIHQKKHELGLLGGGLG-LALE-I-DCIDLGCE-D-I-I-EDH-KH-HAIE---H-EN-QIDHQQKIAANHQNAILGGDAGCCGG--CRI-AIL--GGCD-I-GG-AGCGCRGDA---DAII-KKHQHQDKQI-I-H-K-Q-N-IAEI--KHKK-HHQA-IQQNIDAA-EA--D-D---I-D-AD-AI-AAHQ-IDIKHNQQKQHHNIQNHHKNE-E 'Plenodomus hendersoniae CBS_113702' LGCCLGLLCGRGDGLCRIIIGLADDDICRRGCIIIHQKKHELGLLGGGLG-LALG-I-LCIDLGLE-D-I-I-EDH-QN-HNIK---H-EN-QIDHQQKIAANNQNAILGGDAGCCGG--CRD-AIL--GGCD-I-GG-AGCGCRGDA---DAII-KKHQHQDQQI-I-H-K-Q-N-IEEI--KHKK-HHQA-IQQNIDAA-EA--I-D---I-I-II-AI-DAHQ-IDIKHNQQKQHHNIQNHHKNE-E 'Plenodomus hendersoniae CBS_139.78' LGCCLGLLCGRGDGLCRIIIGLADDDICRRGCIIIHQKKHELGLLGGGLG-LALG-I-LCIDLGLE-D-I-I-EDH-QN-HNIK---H-EN-QIDHQQKIAANNQNAILGGDAGCCGG--CRD-AIL--GGCD-I-GG-AGCGCRGDA---DAII-KKHQHQDKQI-I-H-K-Q-N-IEEI--KHKK-HHQA-IQQNIDAA-EA--I-D---I-I-II-AI-DAHQ-IDIKHNQQKQHHNIQNHHKNE-E 'Plenodomus influorescens CBS_143.84' LGCCLGLLCGRGDGLCRIIIGLADDDICRRGCIIIHQKKHELGLLGGGLG-LALE-I-DLDDIGCE-D-I-I-EDH-QI-HIIE---HAEN-QIDHQQKIAANNQNAILGGDAGCCGG--CRI-AIL--GGCD-I-GG-AGCGCRGDA---DAII-KKHQHQDKQI-I-H-K-Q-N-IEAI--KHKK-HHQA-DQQNIDAA-EA--D-D---I-D-II-AI-DAHQ-IDIKHNQQKQHHNIQNHHKNE-E 'Plenodomus lindquistii CBS_381.67' LGCCLGLLCGRGDGLCRIIIGLADDDICRRGCAIIHQKKHELGLLGGGLG-LAIE-I-I-IDD-CD-D-I-I-E---------E---HAAN-QIDHQQKDAANNQNAILGGDAGCCGG--CRI-AIG--RGCD-I-GG-AGCGCRGDA---DAII-KKHQHQDKQI-I-H-Q-K-K-IEAI--KHKK-HHQA-IQQNIDAA-EA--D-D---I-I-II-AI-IAHQ-IDIKHNQQKQHHNIQNHHKNE-E 'Plenodomus lupini CBS_248.92' LGCCLGLLCGRGDGLCRIIIGLADDDICRRGCIIIHQKKHELGLLGGGCG-IDIG-L-LCLCC-CI-D-D-E-H-H----H--H---H-HN-QIKHQQKIAANNQNAILGGDAGCDEG--CRI-AIL--GGCD-I-GE-AGCGCRGDA---DAAI-KKHQHQDIQI-D-H-K-Q-N-IEII--KHKI-AHQA-DQQNIDAA-EA--D-D---I-I-II-AI-DAHQ-IDIKHNQQKQHHNIQNHHKN--- 'Plenodomus pimpinellae CBS_101637' LGCCLGLLCGRGDGLCRIIIGLADDDICRRGCIIIHQKKHELGLLGGGLG-AALG-I-LCIDLGLE-D-I-I-EDH-QN-HNDK---H-EA-QIDHQQKEAANNQNAILGGDAGCCGG--CRI-AIL--GGCD-I-GG-AGCGCRGDA---DAII-KKHQHQDKQI-I-H-Q-K-N-IEAI--KHKK-HHQA-IQQNIDAA-EA--I-A---I-I-II-AI-IAHQ-IDIKHNQQKQHHNIQNHHKNE-E 'Plenodomus tracheiphilus CBS_127250' LGCCLGLLCGRGDGLCRIIIGLADDDICRRGCIIIHQKKHELGLLGGGLG-LLLG-L-CCADLGCD-D-I-I-EIH-QN-HHNQ---H-HN-QIDHQQKIAANNQNAILGGDAGCCGG--CR--GAL-LGGCC-I-GG-AGCGCRGDA---DAII-KKHQHQDQQI-H-H-K-QHN-DA-Q--KHKK-HHQA-IQQNIDAA-EA--D-D---I-IDII--I-IAHQ-IDIKHNQQKQHHNIQNHHKNE-E ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M58677] TITLE Leptosphaeria_and_Peyronellaea_ITS2_sequence_secondary_structure; LINK TAXA = Taxa2; DIMENSIONS NCHAR=250; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250] [ . . . . . . . . . . . . . . . . . . . . . . . . .] 'Leptosphaeria conoidea CBS_125977' LGCCLGLLCGRGDGLCRIIIGLRDDDICRRGCIIIHQKKHELGILGGGLG-IIIG-L-C--DDGCG-D-IDI-I-I-K--H--QEDEA-HN-QIQHQQKIAANIQNAILGGDAGCCGG--CRI-EII--AGDD-I-GG-AGCGCRGDA---DAII-KKHQHDQDQI-K-E-DIK-E-DI-IE-KHKK-HHQD-DQQNIDAA-EI--D-D---A-I-AI-AI-IKHQ-IDIKHNQQKQHHNIQNHHKNE-E 'Leptosphaeria doliolum CBS_125979' LGCCLGLLCGRGDGLCRIIIGLRDDDICRRGCIIIHQKKHELGILGGGLG-IIIG-L----DDGCG-I-I-I-I-E-Q--H--Q---A-HA-QIQHQQKIAANIQNAILGGDAGCCGG--CRI-EIL--AGDD-I-GG-AECGCRGDA---DAII-KKHQHDADQK-I-E-D-K-E-HD-EE-KHKK-HHQD-DQQNIDAA-EI--D-D---A-I-AI-AI-IKHQ-IDIKHNQQKQHHNIQNHHKNE-E 'Leptosphaeria errabunda CBS_125978' LGCCLGLLCGRGDGLCRIIIGLRDDDLCRRGCIIIHQKKHHIEIIGGGLG-RIIG-L-C--D-GCGCI-I-III-H-Q--H--Q---A-HN-QKQHQQKIAAAIDAAILGGDAGCCGG--CRL-GLL--RGCD-I-GG-AGCGCRGDA---DAII-KKHQHQAQQI-I-H-Q-K-H-HQ-EH-KHKK-HHQD-DQQNIDAA-EI--D-D---A-I-AI-AI-IKHQ-IDIKHNQQKQHHNIQNHHKNE-E 'Leptosphaeria etheridgei CBS_125980' LGCCLGLLCGRGDGLCRIIIGLRDDDICRRGCIDIHQKKHELGLLGGGLG-IIIG-L-C--DDGC--ILD-IED-H-D--H--K---E-HN-QIQHQQKIAANHQNAILGGDAGCCGG--CRI-AII--GGDD-I-GG-RGCGCRGDA---DAII-KKHQHDQKQK-D-EDQ-K-I-EA-I--KHKK-HHQA-IQQNIDAA-ED--D-D---A-I-II-AI-IKHQ-IDIKHNQQKQHHNIQNHHKNE-E 'Leptosphaeria macrocapsa CBS_640.93' LGCCLGLLCGRGDGLCRIIIGLRDDDLCRRGCIIIHQKKHHIEIIGGGLG-RIIG-L-C--D-GCGCI-I-III-H-Q--H--Q---A-HN-QKQHQQKIAAAIDAAILGGDAGCCGG--CRL-GLL--RGCD-I-GG-AGCGCRGDA---DAII-KKHQHQAQQI-I-H-Q-K-H-HQ-EH-KHKK-HHQD-DQQNIDAA-EI--D-D---A-I-AI-AI-IKHQ-IDIKHNQQKQHHNIQNHHKNE-E 'Leptosphaeria pedicularis CBS_126582' LGCCLGLLCGRGDGLCRIIIGLRDDDICRRGCIDIHQKKHELGLLGGGLG-IIIG-L-C--DDGCGCA-I-I-I-H-Q--H--Q---A-HN-QIQHQQKIAANNQNAILGGDAGCCGG--CRI-EAL--RGCD-I-GG-RGCGCRGDA---DAII-KKHQHIQKQK-IIH-K-K-N-ED-I--KHKK-HHQD-DQQNIDAA-EA--D-D---A-I-AI-AI-IKHQ-IDIKHNQQKQHHNIQNHHKNE-E 'Leptosphaeria rubefaciens CBS_223.77' LGCCLGLLCGRGDGLCRIIIGLRDDDICRRGCIDIHQKKHELGLLGGGCG-IIIG-L-C--DDGCG-ILI-IDD-H-Q--H--K---E-HN-QIQHQQKIAANNQNAILGGDAGCCGG--CRI-EII--RGDD-I-GG-RGCGCRGDA---DAII-KKHQHDQKQK-I-EIQ-K-D-ID-I--KHKK-HHQA-DQQNIDAA-ED--D-D---A-I-II-AI-IKHQ-IDIKHNQQKQHHNIQNHHKNE-E 'Leptosphaeria sclerotioides CBS_144.84' LGCCLGLLCGRGDGLCRIIIGLRDDDICRRGCIIIHQKKHELGILGGGLG-IIIG-L-C--DDGCG-D-IDI-I-I-K--H--QEDAA-HN-QIQHQQKIAANIQNAILGGDAGCCGG--CRI-EII--AGDD-I-GG-AGCGCRGDA---DAII-KKHQHDQDQI-K-E-DIK-E-DI-IE-KHKK-HHQD-DQQNIDAA-EI--D-D---A-I-AI-AI-IKHQ-IDIKHNQQKQHHNIQNHHKNE-E 'Leptosphaeria slovacica CBS_125975' LGCCLGLLCGRGDGLCRIIIGLRDDDLCRRGCIIIHQKKHHIEIIGGGLG-IIIG-L-C--DLGCGCI-I-I-I-H-K--H--QH--A-HN-QIQHQQKIAAAIDLRILGGDAGCCGG--CRL-GLL--RGCD-I-GE-AGCGCRGDA---DAII-KKHQHQDIQI-I-H-Q-K-N-HQ-HAIKHKK-HHQD-DQQNIKNA-AI--D-I---A-I-AI-AI-IKHQ-IDIKHNQQKQHHNIQNHHKNE-E 'Leptosphaeria slovacica CBS_389.80' LGCCLGLLCGRGDGLCRIIIGLRDDDLCRRGCIIIHQKKHHIEIIGGGLG-IIIG-L-C--DLGCGCI-I-I-I-H-Q--H--QH--A-HN-QIQHQQKIAAAIDLRILGGDAGCCGG--CRL-GLL--RGCD-I-GE-AGCGCRGDA---DAII-KKHQHQDIQI-I-H-Q-K-N-HQ-HAIKHKK-HHQD-DQQNIKNA-AI--D-I---A-I-AI-AI-IKHQ-IDIKHNQQKQHHNIQNHHKNE-E 'Leptosphaeria sydowii CBS_125976' LGCCLGLLCGRGDGLCRIIIGLRDDDLCRRGCIIIHQKKHHIEIIGGGLG-RIIG-L-C--D-GCG-I-D-IEA---Q--H--Q---A-HN-QKQHQQKIAAAIDAAILGGDAGCCGG--CRL-GLL--RGCD-I-GG-AGCGCRGDA---DAII-KKHQHQAQQI-I-H-Q-K-H-HQ-EH-KHKK-HHQD-DQQNIDAA-EI--D-D---A-I-AI-AI-IKHQ-IDIKHNQQKQHHNIQNHHKNE-E 'Leptosphaeria veronicae CBS_126583' LGCCLGLLCGRGDGLCRIIIGLRDDDICRRGCIIIHQKKHELGILGGGLG-IIIG-L----DDGCG-I-I-I-I-A-Q--H--Q---A-HA-QIQHQQKIAANIQNAILGGDAGCCGG--CRI-EIL--AGDD-I-GG-AECGCRGDA---DAII-KKHQHDADQK-I-E-D-K-E-HD-EE-KHKK-HHQD-DQQNIDAA-EI--D-D---A-I-AI-AI-IKHQ-IDIKHNQQKQHHNIQNHHKNE-E 'Leptosphaeria veronicae CBS_145.84' LGCCLGLLCGRGDGLCRIIIGLRDDDICRRGCIDIHQKKHELGILGGGLG-IIIG-L----DDGCG-I-I-I-D-A-Q--H--Q---A-HA-QIQHQQKIAANIQNAILGGDAGCCGG--CRI-EIL--AGDD-I-GG-AECGCRGDA---DAII-KKHQHDADQK-I-E-D-K-E-HD-EE-KHKK-HHQD-DQQNIDAA-EI--D-D---A-I-AI-AI-IKHQ-IDIKHNQQKQHHNIQNHHKNE-E 'Peyronellaea alectorolophi CBS_132.96' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--I---N-HN-QIDHQQKQNNANQAALLGGDAEDCGE--CGL-ALL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-AIK-Q-N-HA-N--QHAQ-HADE-IQQNN-AA-HK--N-Q-N-I-I-II--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Peyronellaea americana CBS_112525' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--D---N-HN-QIDHQQKQNNANQAALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AA-HK--N-Q-N-I-I-II--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Peyronellaea americana PD_80.1143' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--D---N-HN-QIDHQQKQNNANQAALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AA-HK--N-Q-N-I-I-II--IIADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Peyronellaea anserina CBS_360.84' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--I---N-HN-QIDHQQKQHNANQAALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKQKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AA-HK--N-Q-N-I-I-II--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Peyronellaea arachidicola CBS_315.90' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--I---N-HN-QIDHQQKQNNANQAALLGGDAEDCGE--CGL-ALL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-AIK-Q-N-HA-N--QHAQ-HADE-IQQNN-AA-HK--N-Q-N-I-I-II--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Peyronellaea aurea CBS_269.93' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-K--H--I---N-HN-QIDHQQKQNNANQAALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AA-HK--N-Q-N-I-I-II--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Peyronellaea australis CBS_444.81' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--I---N-HN-QIDHQQKQNNANQAALLGGDAEDCGE--CGL-ALL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-AIK-Q-N-HA-N--QHAQ-HADE-IQQNN-AA-HK--N-Q-N-I-I-II--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Peyronellaea calorpreferens CBS_109.92' IECCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-K--H--I---N-HN-QIDHQQKQNNANQAALLGGDAEDCGE--CGL-ALL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-HA-N--QHAQ-HADE-IQQNN-AA-HK--N-Q-N-I-I-II--I-ADAD-IDIKHNQQKQHHNIQNHH----- 'Peyronellaea coffeae-arabicae CBS 123380' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--D---N-HN-QIDHQQKQNNANQAALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AA-HK--N-Q-N-I-I-II--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Peyronellaea curtisii CBS_251.92' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--I---N-HN-QIDHQQKQNNANQAALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-DA-N--QHAQ-HADE-IQQNN-AA-HK--N-Q-N-I-I-II--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Peyronellaea curtisii PD_71.6' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--I---N-HN-QIDHQQKQNNANQAALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AA-HK--N-Q-N-I-I-II--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Peyronellaea eucalyptica CBS_377.91' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--I---N-HN-QIDHQQKQNNANQAALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AA-HK--N-Q-N-I-I-II--IIADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Peyronellaea gardeniae CBS_302.79' LGCDLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--D---N-HN-QIDHQQKQNNANQAALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-DA-N--QHAQ-HADE-IQQNN-AA-HK--N-Q-N-I-I-II--I-ADAD-IDIKHNQQKQHHNIQNAHKNE-E 'Peyronellaea glomerata CBS_112448' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-K--H--I---N-HN-QIDHQQKQNNANQAALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AA-HK--N-Q-N-I-I-II--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Peyronellaea musae CBS_463.69' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDD-EDH-Q--H--I---N-HN-QIDHQQKQNNANQAALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-DA-N--QHAQ-HADE-IQQNN-AA-HK--N-Q-N-I-I-II--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Peyronellaea obtusa CBS_377.93' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--I---N-HN-QIDHQQKQNNANQAALLGGDAEDCGE--CGL-ALL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-AIK-Q-N-HA-N--QHAQ-HADE-IQQNN-AA-HK--N-Q-N-I-I-II--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Peyronellaea pinodella CBS_100580' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--I---N-HN-QIDHQQKQNNANQAALLGGDAEDCGE--CGL-ALL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-AIK-Q-N-HA-N--QHAQ-HADE-IQQNN-AA-HK--N-Q-N-I-I-II--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Peyronellaea pinodella CBS_531.66' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--I---N-HN-QIDHQQKQNNANQAALLGGDAEDCGE--CGL-ALL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-AIK-Q-N-HA-N--QHAQ-HADE-IQQNN-AA-HK--N-Q-N-I-I-II--I-ADAD-ID-KHNQQKQHHNIQNHHKNE-E 'Peyronellaea pomorum CBS_115.67' LGCCLGLLCGRGDGLCRIILGLRDDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--I---N-HN-QIDHQQKQNNANQAALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AA-EI--A-D---I-I-II--IKNQND-IDIKHNQQKQHHNIQNHHKNE-E 'Peyronellaea pomorum var. circinata CBS_285.76' LGCCLGLLCGRGDGLCRIILGLRDDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--I---N-HN-QIDHQQKQNNANQAALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AA-EI--A-D---I-I-II--IKNQND-IDIKHNQQKQHHNIQNHHKNE-E 'Peyronellaea pomorum var. cyanea CBS_388.80' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--I---N-HN-QIDHQQKQNNANQAALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AA-HK--N-Q-N-I-I-II--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Peyronellaea pomorum var. pomorum CBS_539.66' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--I---N-HN-QIDHQQKQNNANQAALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AA-HK--N-Q-N-I-I-II--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Peyronellaea protuberans CBS_381.96' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--I---N-HN-QIDHQQKQNNANQAALLGGDAEDCGE--CGL-ALL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-AIK-Q-N-HA-N--QHAQ-HADE-IQQNN-AA-HK--N-Q-N-I-I-II--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Peyronellaea sancta CBS_281.83' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--I---N-HN-QIDHQQKQNNANQAALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AA-HK--N-Q-N-I-I-II--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Peyronellaea subglomerata CBS_110.92' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--D---N-HN-QIDHQQKQNNANQAALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AA-HK--N-Q-N-I-I-II--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Peyronellaea zeae-maydis CBS_588.69' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--D---N-HN-QIDHQQKQNNANQAALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AA-HK--N-Q-N-I-I-II--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Plenodomus congestus CBS_244.64' IECCLGLLCGRGDGLCRIIIGLADDDICRRGCIDIHQKKHELGLLGGGLG-IAIG-L-CLGCLGCC-D-I-I-EHH-QNDH-DQ---N-HN-QIQHQQKIAANHQNAILGGDAGCCGG--CRL-A-L-CRGCD-I-GG-AECGCRGDA---DAII-KKHQHIDQQI-I-H-Q-KHN-DD-H--KHKK-HHQA-IQQNIDAA-EA--DEA---I-I-II-AI-DAHQ-IDIKHNQQKQHHNIQNHH----- 'Plenodomus lupini CBS_248.92' LGCCLGLLCGRGDGLCRIIIGLADDDICRRGCIIIHQKKHELGLLGGGCG-IDIG-L-LCLCC-CI-D-D-E-H-H----H--H---H-HN-QIKHQQKIAANNQNAILGGDAGCDEG--CRI-AIL--GGCD-I-GE-AGCGCRGDA---DAAI-KKHQHQDIQI-D-H-K-Q-N-IEII--KHKI-AHQA-DQQNIDAA-EA--D-D---I-I-II-AI-DAHQ-IDIKHNQQKQHHNIQNHHKN--- ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M58679] TITLE Colletotrichum_and_Stagonosporopsis_ITS2_sequence_secondary_structure; LINK TAXA = Taxa1; DIMENSIONS NCHAR=250; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250] [ . . . . . . . . . . . . . . . . . . . . . . . . .] 'Colletotrichum anthrisci CBS_125334' LGCCLGLLCGRGDGLCRIIICRRCDCICRRGCIDIHQKKHHIHKKHGG-G-C--CDL-R---CG---E-I-I-A-A-Q--H--K---N-HH-Q---QQIIAAAGGLAELGGC----GGRCCCL-CIC-GGREDDLCCLILGCGIRGIARC-IAADHKQKQHQNDIH-H-HNKKQ-H-HN-H--HHAI-KQKA-HQQHI-AAANQ-QD-D-D-AAI-II--I-IIAA-EEIKHNQQKQHHNIQNHHKN--E 'Colletotrichum chlorophyti CBS_142.79' LGCCLGLLCGRGDGLCRIIIDARCCDLCRRGCIDAHQKKHHIELLGGG-G-D-DC-L-R---CG---C-D-I-E-H-Q--H--K---N-HIDQ---QQK-NNAGGLAELGGC----GGRCCCL-CIC-GGREDDLCCLILGCGIRGIARC-IAADHKQKQHQNDIH-H-HNKQQ-H-HN-H--HHADDKQIQ-HQQHI-AAANQ-QD-D-D-AAI-II--IIDIIA-HHKKHNQQKQHHNIQNHHKN--E 'Colletotrichum circinans CBS_111.21' LGCCLGLLCGRGDGLCRIILCAADDDICRRGCIDIHQKKHELGLLGGG-G-C--CDL-R---CG---I-D-I-E-A-Q--H--K---N-HH-Q---QQKDAAAHNQNEIGGC----GGRCCCLDL-C-GGREDCICCIILGCGIRGIARC-IAADHKQKQHQNDIH-H-HAKKQ-H-HN-H--HHAD-KQIK-HQQEI-AAAAD-DD-D-D-AAI-II--I--IADAHHIKHNQQKQHHNIQNHHKN--E 'Colletotrichum curcumae IMI_288937' LGCCLGLLCGRGDGLCRIIIDARCCDLCRRGCIDIHQKKHHIELLGGG-G-C-IC-L-R---CG---E-I-I-E-A-Q--H--K---N-HH-Q---QQIQNNAGGLAELGGC----GGRCCCL-C-DDGGREDCICCIILGCGIRGIAADAIIIDEIQKQHQNIIH-H-HAKKQ-A-HN-H--HHAD-KQIK-HQQHI-AAANQ-QD-D-D-AAI-II--AIDIAA-HHKKHNQQKQHHNIQNHHKN--E 'Colletotrichum dematium CBS_115524' LGCCLGLLCGRGDGLCRIIICRRCDCICRRGCIDIHQKKHHIHKKHGG-GDC--C-L-R---CG---E-I-I-A-AAQ--H--K---N-HH-Q---QQIIAAAGGLAELGGC----GGRCCCL-CIC-GGREDDLCCLILGCGIRGIARC-IAADHKQKQHQNDIH-H-HNKKQ-H-HN-H--HHAI-KQKA-HQQHI-AAANQ-QD-D-D-AAA-II--I-IIAA-EEIKHNQQKQHHNIQNHHKN--E 'Colletotrichum dematium CBS_123728' LGCCLGLLCGRGDGLCRIIICRRCDCICRRGCIDIHQKKHHIHKKHGG-G-C--CDL-R---CG---E-I-I-A-AAQ--H--K---N-HH-Q---QQIIAAAGGLAELGGC----GGRCCCL-CIC-GGREDDLCCLILGCGIRGIARC-IAADHKQKQHQNDIH-H-HNKKQ-H-HN-H--HHAI-KQKA-HQQHI-AAANQ-QD-D-D-AAI-II--I-IIAA-EEIKHNQQKQHHNIQNHHKN--E 'Colletotrichum fructi CBS_346.37' LGCCLGLLCGRGDGLCRIIICRRCDCICRRGCIDIHQKKHHIHKKHGG-G-C--CDL-R---CG---E-I-I-E-A-Q--H--K---N-HH-Q---QQIIAAAGGLAELGGC----GGRCCCL-CIC-GGREDDLCCLILGCGIRGIARC-IAADHKQKQHQNDIH-H-HNKKQ-H-HN-H--HHAI-KQKE-HQQHI-AAANQ-QD-D-D-AAI-II--I-IIAA-EEIKHNQQKQHHNIQNHHKN--E 'Colletotrichum lilii CBS_109214' LGCCLGLLCGRGDGLCRIIICRRCDCICRRGCIDIHQKKHHIHKKHGG-G-C--CDL-R---CG---E-I-I-E-A-Q--H--K---N-HH-Q---QQIIAAAGGLAELGGC----GGRCCCL-CIC-GGREDDCCCIILGCGIRGIARC-IAADHKQKQHQNIIH-H-HAKKQ-H-HN-H--HHAD-KQIK-HQQHI-AAANQ-QD-D-IAAAI-II--I-DIAAIEEIKHNQQKQHHNIQNHHKN--E 'Colletotrichum lineola CBS_109228' LGCCLGLLCGRGDGLCRIIICRRCDCICRRGCIDIHQKKHHIHKKHGG-G-C--CDL-R---CG---E-I-I-A-AAQ--H--K---N-HH-Q---QQIIAAAGGLAELGGC----GGRCCCL-CIC-GGREDDLCCLILGCGIRGIARC-IAADHKQKQHQNDIH-H-HNKKQ-H-HN-H--HHAI-KQKA-HQQHI-AAANQ-QD-D-D-AAI-II--I-IIAA-EEIKHNQQKQHHNIQNHHKN--E 'Colletotrichum liriopes CBS_119444' LGCCLGLLCGRGDGLCRIIICRRCDCICRRGCIDIHQKKHHIHKKHGG-G-C--CDL-R---CG---E-I-I-E-A-Q--H--K---N-HH-Q---QQIIAAAGGLAELGGC----GGRCCCLDL-C-GGREDCICCIILGCGIRGIARC-IAADHKQKQHQNIIH-H-HAKKQ-H-NN-H--HHAD-KQIK-HQQHI-AAANQ-QD-D-DAAAI-II--I-DIAAIEEIKHNQQKQHHNIQNHHKN--E 'Colletotrichum rusci CBS_119206' LGCCLGLLCGRGDGLCRIIIDARCCDLCRRGCIDDHQKKHHIIIIGGG-G-C--CDL-R---CG---E-D-E-E-A-Q--H--K---N-HH-Q---QQKIAAAGGLAGLGGC----GGRCCCL-C-CDGGREDDLCCLILGCGIRGIARC-IAADHKQKQHQNDIH-H-HNKQQ-H-HN-H--HHADIKQIK-HQQEI-AAANQNQQ-D-D-A-I-II--IDDAAA-HHKKHNQQKQHHNIQNHHKN--E 'Colletotrichum spaethianum CBS_100063' LGCCLGLLCGRGDGLCRIIICRRCDCICRRGCIDIHQKKHHIHKKHGG-G-C--CDL-R---CG---E-I-I-E-A-Q--H--K---N-HH-Q---QQIIAAAGGLAELGGC----GGRCCCL-CIC-GGREDCICCIILGCGIRGIARC-IAADHKQKQHQNIIH-H-HAKKQ-H-HN-H--HHAD-KQIK-HQQHI-AAANQ-QD-D-DAAAI-II--I-DIAAIEEIKHNQQKQHHNIQNHHKN--E 'Colletotrichum spinaciae CBS_108.40' LGCCLGLLCGRGDGLCRIILCAADDDICRRGCIDIHQKKHELGLLGGG-G-C--CDL-R---CG---I-D-I-E-A-Q--H--K---N-HH-Q---QQKDAAAHNQNEIGGC----GGRCCCLDL-C-GGREDCICCIILGCGIRGIARC-IAADHKQKQHQNDIH-H-HAKKQ-H-HN-H--HHAD-KQIK-HQQEI-AAAAD-DD-D-D-AAI-II--I--IADAHHIKHNQQKQHHNIQNHHKN--E 'Colletotrichum tofieldiae CBS_168.49' LGCCLGLLCGRGDGLCRIIICRRCDCICRRGCIDIHQKKHHIHKKHGG-G-C--CDL-R---CG---E-I-I-E-A-Q--H--K---N-HH-Q---QQIIAAAGGLAELGGC----GGRCCCLDL-C-GGREDCICCIILGCGIRGIARC-IAADHKQKQHQNIIH-H-HAKKQ-H-NN-H--HHAD-KQIK-HQQHI-AAANQ-QD-D-DDAAI-II--I-IIAAIEEIKHNQQKQHHNIQNHHKN--E 'Colletotrichum truncatum CBS_112998' LGCCLGLLCGRGDGLCRIIICRRCDCICRRGCIDIHQKKHHIHKKHGG-G-C-IC-L-R---CG---E-I-I-E-A-Q--H--K---N-HH-Q---QQIIAAAGGLAELGGC----GGRCCCL-CIC-GGREDCICCIILGCGIRGIAADAIIIDEIQKQHQNIIH-H-HAKKQ-H-HN-H--HHAD-KQKA-HQQHI-AAANQ-QD-D-D-AAI-II--IADIAA-EEIKHNQQKQHHNIQNHHKN--E 'Colletotrichum truncatum CBS_125327' LGCCLGLLCGRGDGLCRIIICRRCDCICRRGCIDIHQKKHHIHKKHGG-G-C-IC-L-R---CG---E-I-I-E-A-Q--H--K---N-HH-Q---QQIIAAAGGLAELGGC----GGRCCCL-CIC-GGREDCICCIILGCGIRGIAADAIIIDEIQKQHQNIIH-H-HAKKQ-H-HN-H--HHAD-KQKA-HQQHI-AAANQ-QD-D-DDAAI-II--IADIAA-EEIKHNQQKQHHNIQNHHKN--E 'Colletotrichum truncatum CBS_136.30' LGCCLGLLCGRGDGLCRIIICRRCDCICRRGCIDIHQKKHHIHKKHGG-G-C--CDL-R---CG---E-I-I-E-A-Q--H--K---N-HH-Q---QQIIAAAGGLAELGGC----GGRCCCL-CIC-GGREDCICCIILGCGIRGIAADAIIIDEIQKQHQNIIH-H-HAKKQ-H-HN-H--HHAD-KQKA-HQQHI-AAANQ-QD-D-D-AAI-II--IADIAA-EEIKHNQQKQHHNIQNHHKN--E 'Colletotrichum verruculosum IMI_45525' LGCCLGLLCGRGDGLCRIILCRADDDICRRGCIDIHQKKHELGLLGGG-G-C--CDL-R---CG---E-I-I-E-A-Q--H--K---N-HH-Q---QQKIAAAHHQNEIGGC----GGRCCCLDL-C-GGREDCICCIILGCGIRGIARC-IAADHKQKQHQNIIH-H-HAKQQ-H-NN-H--HHAD-KQIK-HQQEI-AAAAD-DD-D-DDAAI-II--I-DIAAKHHIKHNQQKQHHNIQNHHKN--E 'Leptosphaeria errabunda CBS_125978' LGCCLGLLCGRGDGLCRIIIGLRDDDLCRRGCIIIHQKKHHIEIIGGGLG-RIIG-L-C--D-GCGCI-I-III-H-Q--H--Q---A-HN-QKQHQQKIAAAIDAAILGGDAGCCGG--CRL-GLL--RGCD-I-GG-AGCGCRGDA---DAII-KKHQHQAQQI-I-H-Q-K-H-HQ-EH-KHKK-HHQD-DQQNIDAA-EI--D-D---A-I-AI-AI-IKHQ-IDIKHNQQKQHHNIQNHHKNE-E 'Leptosphaeria macrocapsa CBS_640.93' LGCCLGLLCGRGDGLCRIIIGLRDDDLCRRGCIIIHQKKHHIEIIGGGLG-RIIG-L-C--D-GCGCI-I-III-H-Q--H--Q---A-HN-QKQHQQKIAAAIDAAILGGDAGCCGG--CRL-GLL--RGCD-I-GG-AGCGCRGDA---DAII-KKHQHQAQQI-I-H-Q-K-H-HQ-EH-KHKK-HHQD-DQQNIDAA-EI--D-D---A-I-AI-AI-IKHQ-IDIKHNQQKQHHNIQNHHKNE-E 'Stagonosporopsis actaeae CBS_106.96' LGCCLGLLCGRGDGLCRIILGLRDDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--D---N-HN-QIDHQQKQNNANQEALLGGDAEDCGE--CGL-EIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-DA-N--QHAQ-HADE-IQQNN-AAAEI--A-DDA-I-I-II--IKNQND-IDIKHNQQKQHHNIQNHHKNE-E 'Stagonosporopsis ajacis CBS_176.93' LGCCLGLLCGRGDGLCRIILGLRCDILCRRGCIDIHQKKHHIELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--D---N-HN-QIDHQQKQNNAAIEALLGGDAEDCGE--CGL-ALL--GAII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKHID-A-A-Q-N-NA-N--QHAQ-HADEAIQQNN-AAAHK--N-Q-N-I-I-II--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Stagonosporopsis ajacis CBS_177.93' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--D---N-HN-QIDHQQKQNNANQEALLGGDAEDCGE--CGL-ALL--GAII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKHID-A-A-Q-N-NA-N--QHAQ-HADEAIQQNN-AAAHK--N-Q-N-I-I-II--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Stagonosporopsis andigena CBS_101.80' LGCCLGLLCGRGDGLCRIILGLRCDILCRRGCIDIHQKKHHIEIIGGGLG-IIIG-L-CL--CGC--D-IDI-EDH-Q--H--D---N-HN-QIQHQQKIAAAAIEALLGGCREDCGE--CGL-EIL--GRII-LCGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-H-IDK-Q-N-DA-N--QHAQ-HAKH-IQQNN-AAAHK--N-Q-N-I-I-II--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Stagonosporopsis andigena CBS_269.80' LGCCLGLLCGRGDGLCRIILGLRCDILCRRGCIDIHQKKHHIEIIGGGLG-IIIG-L-CL--CGC--D-IDI-EDH-Q--H--D---N-HN-QIQHQQKIAAAAIEALLGGCAEDCGE--CGL-EIL--GRII-LCGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-H-IDK-Q-N-DA-N--QHAQ-HADH-IQQNN-AAAHK--N-Q-N-I-I-II--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Stagonosporopsis astragali CBS_178.25' LGCCLGLLCGRGDGLCRIILGLRCDILCRRGCIIIHQKKHHIGLLGGGLG-IIIG-L-CL--CGC--D-IDI-EDH-Q--H--D---N-HN-QIQHQQKIAANNQEALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AAAHK--N-Q-N-I-IIII--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Stagonosporopsis caricae CBS_248.90' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--D---N-HN-QIDHQQKQNNANQEALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-DA-N--QHAQ-HADE-IQQNN-AAAHK--N-Q-N-I-I-II--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Stagonosporopsis chrysanthemi ATCC_10748' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--D---N-HN-QIDHQQKQNNANQEALLGGDAEDCGE--CGL-ALL--GAII-LCGG-RGCGCRGIA---DAIQ-KDHQHQKKKHND-A-A-Q-N-NA-N--QHAQ-HADE-IQQNN-AAAHK--N-Q-N-I-I-II--IIADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Stagonosporopsis crystalliniformis CBS_713.85' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--D---N-HN-QIDHQQKQNNANQEALLGGDAEDCGE--CGL-EIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AAAHK--N-Q-N-I-I-DI--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Stagonosporopsis cucurbitacearum PD_91.310' LGCCLGLLCGRGDGLCRIILGLRCDILCRRGCIIIHQKKHHIELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--D---N-HN-QIDHQQKQNNAADEALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-DA-N--QHAQ-HADE-IQQNN-AAAHK--N-Q-N-I-I-II--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Stagonosporopsis dennisii CBS_135.96' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--D---N-HN-QIDHQQKQNNANQEALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-DA-N--QHAQ-HADE-IQQNN-AAAHK--N-Q-N-I-I-II--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Stagonosporopsis heliopsidis CBS_109182' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--D---N-HN-QIDHQQKQNNANQEALLGGDAEDCGE--CGL-AIL--GRDI-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-I-IKQ-N-DA-N--QHAQ-HADE-IQQNN-AAAHK--N-Q-N-I-I-II--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Stagonosporopsis hortensis CBS_104.42' LGCCLGLLCGRGDGLCRIILGLRCDILCRRGCIIIHQKKHHIGLLGGGLG-IIIG-L-CL--CGC--D-IDI-EDH-Q--H--D---N-HN-QIQHQQKIAANNQEALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AAAHK--N-Q-N-I-IIIA--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Stagonosporopsis hortensis CBS_572.85' LGCCLGLLCGRGDGLCRIILGLRCDILCRRGCIIIHQKKHHIGLLGGGLG-IIIG-L-CL--CGC--D-IDI-EDH-Q--H--D---N-HN-QIQHQQKIAANNQEALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AAAHK--N-Q-N-I-LGIA--I-AQND-IDIKHNQQKQHHNIQNHHKNE-E 'Stagonosporopsis ligulicola var. inoxydabilis CBS_425.90' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--D---N-HN-QIDHQQKQNNANQEALLGGDAEDCGE--CGL-ALL--GAII-LCGG-RGCGCRGIA---DAIQ-KDHQHQKKKHND-A-A-Q-N-NA-N--QHAQ-HADE-IQQNN-AAAHK--N-Q-N-I-I-II--IIADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Stagonosporopsis loticola CBS_562.81' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--D---N-HN-QIDHQQKQNNANQAALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AAAHK--N-Q-N-I-I-II--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Stagonosporopsis lupini CBS_101494' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIIIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-III-EDH-Q--H--D---N-HN-QIDHQQKQNNANQEALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-ADK-Q-N-IA-N--QHAQ-HADE-IQQNN-AAAHK--N-Q-N-I-I-II--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Stagonosporopsis oculo-hominis CBS 634.92' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--D---N-HN-QIDHQQKQNNANQEALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKQKH-D-ADK-Q-N-DD-N--QHAQ-HADE-IQQNN-AAAHK--N-Q-N-I-IIII--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Stagonosporopsis rudbeckiae CBS_109180' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--D---N-HN-QIDHQQKQNNANQEALLGGDAEDCGE--CGL-ALL--GAII-LCGG-RGCGCRGIA---DAIQ-KDHQHQKKKHND-A-A-Q-N-NA-N--QHAQ-HADE-IQQNN-AAAHK--N-Q-N-I-I-II--IIADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Stagonosporopsis trachelii CBS_379.91' IECCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--D---N-HN-QIDHQQKQNNANQEALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKQKH-D-ADK-Q-N-DA-N--QHAQ-HADE-IQQNN-AAAHK--N-Q-N-I-I-DI--I-ADAD-ID-KHNQQKQHHNKDAEINHH-E 'Stagonosporopsis trachelii CBS_384.68' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--D---N-HN-QIDHQQKQNNANQEALLGGDAEDCGE--CGL-AIL--GRII-ICGG-RGCGCRGIA---DAIQ-KDHQHQKQKH-D-ADK-Q-N-DA-N--QHAQ-HADE-IQQNN-AAAHK--N-Q-N-I-IIDI--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E 'Stagonosporopsis valerianellae CBS_273.92' LGCCLGLLCGRGDGLCRIILGLRCDIICRRGCIDIHQKKHGLELLGGGIG-LIIG-L-CL--CGC--D-IDI-EDH-Q--H--D---N-HN-QIDHQQKQNNANQEALLGGDAEDCGE--CGL-ALL--GALL-ICGG-RGCGCRGIA---DAIQ-KDHQHQKKKH-D-N-N-D-Q-NH-N--QHAQ-HADE-IQQNN-AAAHK--N-Q-N-I-I-II--I-ADAD-IDIKHNQQKQHHNIQNHHKNE-E ; END; BEGIN TREES; TITLE Leptosphaeria_and_Peyronellaea_MLT; LINK TAXA = Taxa2; TRANSLATE 1 'Leptosphaeria conoidea CBS_125977', 2 'Leptosphaeria doliolum CBS_125979', 3 'Leptosphaeria errabunda CBS_125978', 4 'Leptosphaeria etheridgei CBS_125980', 5 'Leptosphaeria macrocapsa CBS_640.93', 6 'Leptosphaeria pedicularis CBS_126582', 7 'Leptosphaeria rubefaciens CBS_223.77', 8 'Leptosphaeria sclerotioides CBS_144.84', 9 'Leptosphaeria slovacica CBS_125975', 10 'Leptosphaeria slovacica CBS_389.80', 11 'Leptosphaeria sydowii CBS_125976', 12 'Leptosphaeria veronicae CBS_126583', 13 'Leptosphaeria veronicae CBS_145.84', 14 'Peyronellaea alectorolophi CBS_132.96', 15 'Peyronellaea americana CBS_112525', 16 'Peyronellaea americana PD_80.1143', 17 'Peyronellaea anserina CBS_360.84', 18 'Peyronellaea arachidicola CBS_315.90', 19 'Peyronellaea aurea CBS_269.93', 20 'Peyronellaea australis CBS_444.81', 21 'Peyronellaea calorpreferens CBS_109.92', 22 'Peyronellaea coffeae-arabicae CBS 123380', 23 'Peyronellaea curtisii CBS_251.92', 24 'Peyronellaea curtisii PD_71.6', 25 'Peyronellaea eucalyptica CBS_377.91', 26 'Peyronellaea gardeniae CBS_302.79', 27 'Peyronellaea glomerata CBS_112448', 28 'Peyronellaea obtusa CBS_377.93', 29 'Peyronellaea musae CBS_463.69', 30 'Peyronellaea pinodella CBS_100580', 31 'Peyronellaea pinodella CBS_531.66', 32 'Peyronellaea pomorum var. circinata CBS_285.76', 33 'Peyronellaea pomorum var. cyanea CBS_388.80', 34 'Peyronellaea pomorum CBS_115.67', 35 'Peyronellaea pomorum var. pomorum CBS_539.66', 36 'Peyronellaea protuberans CBS_381.96', 37 'Peyronellaea sancta CBS_281.83', 38 'Peyronellaea subglomerata CBS_110.92', 39 'Peyronellaea zeae-maydis CBS_588.69', 40 'Plenodomus congestus CBS_244.64', 41 'Plenodomus lupini CBS_248.92'; TREE tree1 = [&R] ((40:0.08109623681,41:0.2016023283)94.0:0.019240333175,((((9:0.005678362032,10:1.0E-8)100.0:0.0684286715,(11:0.01757338968,(3:0.0,5:0.0)100.0:1.0E-8)100.0:0.02998364959)100.0:0.1391310198,(6:0.02190696522,((4:0.05756121882,7:0.01681759421)97.0:0.04348725915,((1:0.002329368884,8:0.002501415342)100.0:0.04329738118,(2:1.0E-8,(12:1.0E-8,13:0.009950323037)66.0:0.004945868902)96.0:0.02807481936)92.0:0.05965549913)80.0:0.02660967474)80.0:0.03189484384)90.0:0.0680524995,((32:0.0,34:0.0)100.0:1.0E-8,(17:0.01085833722,(((19:0.0,27:0.0)63.0:0.005380540764,(21:0.01666173324,(31:1.0E-8,(14:0.0,18:0.0,20:0.0,28:0.0,30:0.0,36:0.0)61.0:1.0E-8)95.0:0.005336398269)79.0:0.0114607078)60.0:1.0E-8,((25:1.0E-8,(24:0.0,33:0.0,35:0.0,37:0.0)15.0:1.0E-8)100.0:1.0E-8,((26:0.01623923955,(23:1.0E-8,29:0.005377952055)63.0:1.0E-8)54.0:0.005387427843,(16:1.0E-8,(15:0.0,22:0.0,38:0.0,39:0.0)40.0:1.0E-8)62.0:0.00531490308)43.0:1.0E-8)23.0:1.0E-8)50.0:1.0E-8)85.0:0.05007696348)100.0:0.4631709832)100.0:0.019240333175); END; BEGIN TREES; TITLE Colletotrichum_and_Stagonosporopsis_MLT; LINK TAXA = Taxa1; TRANSLATE 1 'Colletotrichum anthrisci CBS_125334', 2 'Colletotrichum chlorophyti CBS_142.79', 3 'Colletotrichum circinans CBS_111.21', 4 'Colletotrichum curcumae IMI_288937', 5 'Colletotrichum dematium CBS_115524', 6 'Colletotrichum dematium CBS_123728', 7 'Colletotrichum fructi CBS_346.37', 8 'Colletotrichum lilii CBS_109214', 9 'Colletotrichum lineola CBS_109228', 10 'Colletotrichum liriopes CBS_119444', 11 'Colletotrichum rusci CBS_119206', 12 'Colletotrichum spaethianum CBS_100063', 13 'Colletotrichum spinaciae CBS_108.40', 14 'Colletotrichum tofieldiae CBS_168.49', 15 'Colletotrichum truncatum CBS_112998', 16 'Colletotrichum truncatum CBS_125327', 17 'Colletotrichum truncatum CBS_136.30', 18 'Colletotrichum verruculosum IMI_45525', 19 'Leptosphaeria errabunda CBS_125978', 20 'Leptosphaeria macrocapsa CBS_640.93', 21 'Stagonosporopsis actaeae CBS_106.96', 22 'Stagonosporopsis ajacis CBS_176.93', 23 'Stagonosporopsis ajacis CBS_177.93', 24 'Stagonosporopsis valerianellae CBS_273.92', 25 'Stagonosporopsis andigena CBS_101.80', 26 'Stagonosporopsis andigena CBS_269.80', 27 'Stagonosporopsis caricae CBS_248.90', 28 'Stagonosporopsis astragali CBS_178.25', 29 'Stagonosporopsis chrysanthemi ATCC_10748', 30 'Stagonosporopsis crystalliniformis CBS_713.85', 31 'Stagonosporopsis cucurbitacearum PD_91.310', 32 'Stagonosporopsis dennisii CBS_135.96', 33 'Stagonosporopsis heliopsidis CBS_109182', 34 'Stagonosporopsis hortensis CBS_104.42', 35 'Stagonosporopsis hortensis CBS_572.85', 36 'Stagonosporopsis ligulicola var. inoxydabilis CBS_425.90', 37 'Stagonosporopsis loticola CBS_562.81', 38 'Stagonosporopsis lupini CBS_101494', 39 'Stagonosporopsis oculo-hominis CBS 634.92', 40 'Stagonosporopsis rudbeckiae CBS_109180', 41 'Stagonosporopsis trachelii CBS_379.91', 42 'Stagonosporopsis trachelii CBS_384.68'; TREE tree1 = [&R] ((19:0.0,20:0.0)100.0:0.16076062605,(((18:0.01248918267,(3:0.0,13:0.0)100.0:0.04376316302)96.0:0.1009260799,((4:0.07466602639,(2:0.05555292094,11:0.06598173106)93.0:0.04208195549)91.0:0.03340484585,(((8:0.01702747026,12:1.0E-8)97.0:1.0E-8,(10:1.0E-8,14:0.01085763479)82.0:0.01084948708)95.0:0.002417025968,((15:1.0E-8,(16:1.0E-8,17:1.0E-8)55.0:1.0E-8)100.0:0.03729599007,(7:0.005493928631,(1:1.0E-8,(5:0.005550943726,(6:0.0,9:0.0)59.0:1.0E-8)63.0:1.0E-8)87.0:0.00573404585)100.0:0.03987045747)89.0:0.01240274776)99.0:0.05566253096)83.0:0.006658310085)100.0:0.4599476363,((25:0.01069136278,26:1.0E-8)100.0:0.01179460714,((28:1.0E-8,(34:1.0E-8,35:0.02105331399)63.0:0.005130518571)100.0:0.02649114791,((22:0.02658594419,31:0.004981771954)69.0:0.003757880987,((33:0.01582461142,(24:0.03815168416,(23:1.0E-8,(29:0.0,36:0.0,40:0.0)98.0:0.01104527045)63.0:1.0E-8)98.0:0.02160500516)93.0:1.0E-8,(((21:0.05644386336,30:0.005041360917)57.0:0.005700329683,(37:0.005202528836,38:0.0104270525)78.0:1.0E-8)79.0:0.005443869592,((27:0.0,32:0.0)73.0:1.0E-8,(39:0.005232287494,(41:0.05410226949,42:1.0E-8)83.0:0.005155486388)91.0:0.005156849717)100.0:1.0E-8)78.0:1.0E-8)98.0:0.02187410736)98.0:0.03239816444)92.0:0.04044839704)98.0:0.2152138817)97.0:0.16076062605); END; BEGIN TREES; TITLE Boeremia_and_Plenodomus_MLT; LINK TAXA = Taxa3; TRANSLATE 1 'Colletotrichum fructi CBS_346.37', 2 'Colletotrichum lilii CBS_109214', 3 'Boeremia crinicola CBS_109.79', 4 'Boeremia diversispora CBS_531.86', 5 'Boeremia exigua var. coffeae CBS_109183', 6 'Boeremia exigua var. exigua CBS_101150', 7 'Boeremia exigua var. forsythiae CBS_101197', 8 'Boeremia exigua var. forsythiae CBS_101212', 9 'Boeremia lycopersici CBS_101199', 10 'Boeremia gilvescens CBS_101156', 11 'Boeremia exigua var. heteromorpha CBS_101196', 12 'Boeremia exigua var. lilacis CBS_101206', 13 'Boeremia exigua var. linicola CBS_109.49', 14 'Boeremia exigua var. linicola CBS_112.28', 15 'Boeremia exigua var. populi CBS_100167', 16 'Boeremia exigua var. pseudolilacis CBS_101207', 17 'Boeremia exigua var. viburni CBS_100354', 18 'Boeremia foveata CBS_109176', 19 'Boeremia hedericola CBS_366.91', 20 'Boeremia lycopersici CBS_101200', 21 'Boeremia lycopersici CBS_109172', 22 'Boeremia noackiana CBS_101216', 23 'Boeremia sambuci-nigrae CBS_109170', 24 'Boeremia strasseri CBS_126.93', 25 'Boeremia telephii CBS_109175', 26 'Plenodomus agnitus CBS_121.89', 27 'Plenodomus agnitus CBS_126584', 28 'Plenodomus chrysanthemi CBS_539.63', 29 'Plenodomus confertus CBS_375.64', 30 'Plenodomus congestus CBS_244.64', 31 'Plenodomus enteroleucus CBS_142.84', 32 'Plenodomus hendersoniae CBS_113702', 33 'Plenodomus hendersoniae CBS_139.78', 34 'Plenodomus influorescens CBS_143.84', 35 'Plenodomus lindquistii CBS_381.67', 36 'Plendomus lingam CBS_260.94', 37 'Plenodomus lupini CBS_248.92', 38 'Plenodomus pimpinellae CBS_101637', 39 'Plenodomus tracheiphilus CBS_127250'; TREE tree1 = [&R] ((1:1.0E-8,2:0.05790489219)100.0:0.47334201205,((30:0.1346963359,((36:0.02364700506,37:0.1128550244)73.0:0.02584277469,((29:0.0252920461,(28:1.0E-8,39:1.0E-8)100.0:0.07468679191)98.0:0.02945517799,((38:0.04780010019,(32:0.004942316845,33:1.0E-8)100.0:0.00460043678)92.0:0.00923607151,(31:0.0459268689,(34:0.01565133833,(35:0.06871443795,(26:1.0E-8,27:0.01064963015)100.0:0.06041821129)68.0:0.01229820848)66.0:0.02056937748)98.0:0.02597208159)92.0:0.01361883049)99.0:0.05130307736)92.0:0.0205807147)100.0:0.1854167558,((13:0.02860376213,14:1.0E-8)100.0:0.03922464966,(5:0.05962760437,((22:0.005516045527,(3:0.0,4:0.0,12:0.0,19:0.0,23:0.0,24:0.0)59.0:1.0E-8)63.0:0.005537592364,((20:0.04494243451,21:1.0E-8)67.0:0.005567495286,((8:0.0,9:0.0)60.0:1.0E-8,(6:0.0,7:0.0,10:0.0,11:0.0,15:0.0,16:0.0,17:0.0,18:0.0,25:0.0)25.0:1.0E-8)100.0:1.0E-8)41.0:1.0E-8)55.0:1.0E-8)98.0:0.0187504599)91.0:0.1468731267)74.0:0.47334201205); END;