#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on March 29, 2024; 7:56 GMT TreeBASE (cc) 1994-2008 Study reference: Li J., & Zhang Y. 2006. Phylogenetic relationships of Pythium and Phytophthora species based on ITS rDNA, cytochrome oxidase II and beta-tubulin gene sequences. Mycologia, 98(3): 410-422. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S25489] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=20; TAXLABELS 'Globisporangium ultimum ultimum DBC755_MN727090' Pythium_acanthophoron_KJ524516 Pythium_acrogynum_MK794932 Pythium_aphanidermatum_AJ233438 Pythium_aquatile_HQ643445 Pythium_catenulatum_FJ917394 Pythium_cylindrosporum_AY083591 Pythium_diclinum_GU233301 Pythium_dissotocum_HQ643529 Pythium_heterothallicum_GU645206 Pythium_intermedium_AB512966 Pythium_irregulare_MF765706 Pythium_mastophorum_MG593942 Pythium_middletonii_KT247396 Pythium_periplocum_HQ643743 Pythium_prolatum_HQ643754 Pythium_spinosum_KU208343 Pythium_torulosum_JN630493 Pythium_ultimum_ultimum_MK326541 Pythium_violae_HQ643967 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M52666] TITLE Pythium_and_Phytophthora_ITS; LINK TAXA = Taxa1; DIMENSIONS NCHAR=1119; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] 'Globisporangium ultimum ultimum DBC755_MN727090' -----------------------------------------------------------------TGCGGAAGGATCATTACCACACTTTAAAAAAACTGTCCACGTGAACTGTAAGCAAGTCTAGCGCTGTCACTGAGCTGGTGTTTTCCAATATATA-TATATTGGACACTGGAACG-GGAGTCAGCAGGACG---AAGGTTGGTCTCTTGTAATGCAAGT--------TATGAGAGACTAGCTGATGAACTTTTCTTTTT-AAACCCTTCTTACCTAAATATACTGATTTATAGTGTGGGGACGAAAGTCCGTGCTTTTA-CTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGACATCGAAATTTTGAACGCATATTGCACTTTCGGGTTATGCGTGGAAGTGTGTGTGTCTCAGTGTCCGTAAATCAAACTTGCCTTTCTTTTT-CTGTGTA-------------------------GACAGGGATGGA-ATGTGCAGATGTGAAGTGTCTCGCAT------GGTTGCGTTCGTTTTTC--------GAGCGACAATCTGTCGAGCCCTTTTAAATGGACAC--GGTCTTTTCTAT-GGTCTCTATGAAGTGTAATGCTCGGAAGGCAGTGATTT---TCGGATCGCTG--GCGGCTTTTGGCGACTT-CTGTATGAACGTGT-------ATGGAGACTACCTCAATTCGCGGTATGTTAGGCT----------------------TCGGCTCGACAATGTTGCGTAATTGT-ATGTGTGGTCT-TT--------------GTTTGTGCCTTGAGGTGTACTA----GAGGT--TGTCGGTTTGAACCGTAGGTGA--TTG--TTTAGTAGA-GCATTTTCGCGATGTATGGAGAC-------GCTGC---ATTTGGTTGC--GTAGAG-AGA------TTGATTTGGGA-AATTTTGTATCA---TT-AGCAATTGCAAG---ATTGTGTATGGTATCTCAATTGGACCTGATATCAGACAAGACTACCCGCTGAACTTAAGC------ Pythium_acanthophoron_KJ524516 ---------------------------------------------------------------CCTGCGGAAGGATCATTACCACACTT--AAAAA-CTTTCCACGTGAACCGTTA-------TAACTATGT-TCTGTGCTTCGTCTTC---------------ATCGTAAGATTT--------GAGGCTGAACG---AAGGTGAGTCTGCGTCTATTT----------TGGATGCGGATT-TGCTGAT-----GTT-ATTTT-AAACACCTATTACT---TAATACTGAACTATACTCCGAATACGAAAGTTTTTGGTTTTAACAA-TTAACAACTTTCAGCAGTGGATGTTTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTTCGGGTTATGCCTGGAAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGTCTTTCTTTTT-TTGTGTA-------------------------GTCAAAATTAGAGATGGCAGAATGTGAGGTGTCTCGC--------GCTGT-----CTTTTTT----------AAAAAGATGGTTCGAGTCCCTTTAAATGTACGTTGATTCTTTCTTGT-GTCTG---CGAATTGCGACGCTATGCTCTTTGTGATCGGTTT-AGATTGCTT-TGCGCTGGTGGGCGACTT-CGGTTAGGACAT---------ATGGAAGCAACCTCAATTGGCGGTATGTTCGGCT----------------------TTG-CCTGACGTTA-AGC-TAAGCG---AGTGTGGTTTTCT--------------GTCTTTTCCTTGAGGTGTACCT----ATTGTG-TGTGAGGT--TGGTTTAGGCTAT-ATGGTTGCTTGGTT-GTGTGGTTTAGC-GTTTTCAGAC-------GCCTG----CTTCGG--TAGGTAAAG-G---------AGACAACACC-AATTTGGGACTG---AGAGTT-------TA--------CTCTCTTTTTCACTTTGGACCTGATATCAGGTAAGACTACCCGC-GAGTACGG-------- Pythium_acrogynum_MK794932 -------------------------------------------------------------------ACTATCCACGTGAACCGTTTGTA-CCCAGATTTGCGCCGAGATTTTCGTGCGTGTTTGTTTGTATCACTGTGTATTCGTACGCGGTGTG---------TGGCAAATATGTATGGAGCTTGGCTGATCG---AAGGTCGTATCGCACTTTAT-------------TGTGTGTGTC-GGCTGAC-----TTATT-TTT-CAAACCCATTACTT----ACTACTGATT-ATACTGTGAAGACGAAAGTCTTTGCTTTTA-CTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTTCGGGTTATACCTGGAAGTATGTCTGTATCAGTGTCCGTACATCAAACTTGCCTCTCTTTAT-TGGTGTA-------------------------GTCCAATATCGAGCAGAGCAGATCTGAGGTGTCTCGCGGCTGTTGTGTATAGAAGGTTTGTATGAACTTTATATACCAAGCTT-CGAGTCCCTTTAAAACGACAC--GATCTTTCTATTTGCTTTCTACAGAGCGCATATTTCGAA-CGCGGCGGTCC---TCGGATCACTC--GCAGTCGACAGCGATTT-CGGCAGAGACGT---------ATGGGAGAAACCTCTATTCGCGGTACGTTAGGCT----------------------TCGGCTCGACAATGTTGCGATAT-A--GTGTGTGGCTC-TC--------------GTCTTTGTCTTGAGGTGTACTG----TTGGT--TGTGGGTTTGAACCTTGTGTATT-GTTTTGTTAGTAGA-ATTGTGTTGTTTTTTTCTGTGGTTG-----GATTCCATATGCACGCAAGTGTTTT--GTGG----GTAGAGAGATTC-TATTTGGGA-AA---T-TTGTACTGCATGA-GCTTTTTGGCTAGTGTATGTATCTCAATTGGA------------------------------------ Pythium_aphanidermatum_AJ233438 ---------------------------------------------------------------------------------CCACACCA--TAAAAACTTTCCACGTGAACCGTTG-------AAATCATGT-TCTGTGCTCTCT-TTC-----------------GG-GAGG--------------GCTGAACG---AAGGTGG-GCTGCTT-----------------AATTGTAGTCT--GCCGAT-----GTA-TTTTT-CAAACCCATTTACC---TAATACTGATCTATACTCCAAAAACGAAAGTTTATGGTTTTAATCT-ATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCACATTGCACTTTCGGGTTATGCCTGGAAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGCCTTTCTTTTT-CTGTGTA-------------------------GTCAGGGAGAGAGATGGCAGAATGTGAGGTGTCTCGCTG------GCTCC-----CTTTTCG----------GAGGAGAAGACGCGAGTCCCTTTAAATGTACGTTCGCTCTTTCTTGT-GTCTAAGATGAAGTGTGATTCTCGAATCGCGGTGATCTGTTT-GGATCGCTT-TGCGCATTTGGGCGACTT-CGGTTAGGACATTA-------AAGGAAGCAACCTCTATTGGCGGTATGTTAGGCT----------------------TCGGCCCGACGTTGCAGC-TGACAG---AGTGTGGTTTTCT--------------GTTCTTTCCTTGAGGTGTACCT----GAATTG-TGTGAGGCAATGGTCTGGGCAA--ATGGTTGCTGTGTA-GTAGGGTTTTGCTGCTCTTGGAC-------GCCCTG--TTTTCGGATAGGGTAAAG-G---------AGGCAACACC-AATTTGGGACTG---TTT-GCAATTTATTGTG------AACA-ACTTTCTAA----------------------------------------------- Pythium_aquatile_HQ643445 --------------------------------------------------------------------------------------CCA--AAAAAACTTTCCACGTGAACCGTTG-------TAACTATGT-TCTGTGCGATCTCCTC-----------------GGAGAGA--------------GCTGAACG---AAGGTGG-GCTGCTT-----------------AATTGTAGTCT--GCCGAT-----GTA-CTTTT--AAACCCATTACAC---TAATACTGAACTATACTCCAAAAACGAAAGTATTTGGTTTTAATCA-ATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCACATTGCACTTTCGGGTTATGCCTGGAAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGCCTTTCTTTTT-TTGTGTA-------------------------GTCAAGAAAAGAGATGGCAGACTGTGAGGTGTCTCGCTG------ACTCC-----CTCCTCG----------GAGGAGAAGACGCGAGTCCCTTTAAATGTACGTTCGCTCTTTCTTGT-GTTTAAGATGAAGTGTGACTTTCGAA-CGCAGTGATCTGTTT-GGATCGCTT-TGCTCGAGTGGGCGACTT-CGGTTAGGACATTA-------AAGGAAGCAACCTCTATTGGCGGTATGTTAGGCT----------------------TCGGCCCGACTTTGCAGC-TGACAG---TGTGTGGTTTTCT--------------GTTCTTTCCTTGAGGTGTACCT----GTCTTG-TGTGAGGCAATGGTCTGGGCAA--ATGATTATTGTGTA-GTAGGAAGTTGCTGCTCTTAAGC-------GCTCT---GTCTCGGC-AGAGTAAAG-A---------AGGCAACACC-AATTTGGGA-TA---GT--TTACTTTACTGTA------AGCGCTCTTTCTAATTGGACCTGATATCAGGCAAGACTACCCGCTGAACTTAAG------- Pythium_catenulatum_FJ917394 ----------------------------------------------------------------------AAGGATCATTACCACACCT--AAAAAACTTTCCACGTGAACCGTTA-------CAATTATGT-TCTGTGCTCTCT-CTC-----------------GG-GAGG--------------GCTGAACG---AAGGTAGAGCTGCATGTTA-------------AAGTGCGGTTTCTGCCGAT-----GTA-CTTTT--AAACCCATTACAC---TAATACTGAACTATACTCCGAGAACGAAAGTTTTTGGTTTTAATCA-ATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCACATTGCACTTTCGGGATATTCCTGGAAGTATGCTTGTATCAGTGTCCGTACATCAAACTTGCCTTTCTTTTT-TTGTGTA-------------------------GTCAAGGAGAGAAATGGCAGAATGTGAGGTGTCTCGCTG------ACTCC-----CTCTTCG----------GAGGAGAAGACGCGAGTCCCTTTAAATGTACGTTCGCTCTTTCTTGT-GTCTAAGATGAAGTGTGACTTTCGAA-CGCAGTGATCTGTTT-GGATCGCTT-TGCGCGAGTGGGCGACTT-CGGTTAGAACATTA-------AAGGAAGCAACCTCTATTGGCGGTATGTTAGGCT----------------------TCGGCCCGACTTTGCAGC-TGACAG---TGTGTTGTTTTCT--------------GTTCTTTCCTTGAGGTGTACCT----GTCTTG-TGTGAGGCAATGGTCTGGGCAA--ATGGTTATTGTGTA-GTAGAATTTTGCTGCTCTTGGGC-------GCCCT----ACTCG--TAGGGTAAAG-G---------AGGCAACACC-AATTTGGGACTA---GT--CTGTTTCGGCA--------GGCGCATTTTCAATTTGGACCTGATATCAAGCAAGATTACCCGCTGAACTTAA-------- Pythium_cylindrosporum_AY083591 CCACACCTAAAAAAACTTTCCACGTGAACTGTCGTTATTTGTTGTGTGTGTGCGCGTTGGTAGCATGCGCGTTTGCTTACGCTTCGGTGT-TTGCGAGTGCGCGTGCTGGCGGTGCGCAGACTGAACGAAGGTCGTGTGTTTGCTGTGTGCCTGCTGCA-----CCGCTGACTTTT----GCATTGATTTGCATGATGTTGGCGGAGCGGCGGGTGCT------------GTGCGTGCGCGCGGCTGAC-----CTATTTTTTTCAAACCCCATACCT--AAATGACTGATT-ATACTGTGAGAACGAAAGTTCTTGCTTTAAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAAACTTGCGTTTCTTCCTTCCGTGTA-------------------------GTCGGTGGAGGATCGTTGCAGATGTGAAGTGTCTCGCTGT-----GGTTG--GCGTTCGTTGTTTGCAATGAATGCACAGCTTGCGAGTCCTTTTAAATGGACACG-ACTTTCTCTTTTTTGTATGTGCGCGGTGCTGTGCGTGAA-CGCGGTGGTTT---TCGGATCGCTC--GCGGCTGTCGGCGACTT-CGGTGAATGCATA--------ATGGAGTGGACCTCGATTCGCGGTATGTTGGGCT----------------------TCGGCTGGACAATGTTGC-TTATTG--TTGTGTCTGTT-CC--------------GCGTTCGCCTTGAGGTGTACTG----GTGGC--TGTGGGATTGAACTGGTTACTG--TTGTTAGTAGTGTGTGTGGCACGTTGTCGTGGATGCATCTGTGTTTTTTTTGCATACTT-TGTGTGTGCAGTTGAGGGCAGAAGAGAAGTCTCAATTTGGGAAAAGTTTTGTATACTCCGGGTTGATCCTGCGTGTATATCTCAA----------------------------------------------- Pythium_diclinum_GU233301 --------------------------------------------CAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACCACACCA--AAAAAACTTTCCACGTGAACCGTTG-------TAACTATGT-TCTGTGCTCTCTTCTC-----------------GGAGAGA--------------GCTGAACG---AAGGTGG-GCTGCTT-----------------AATTGTAGTCT--GCCGAT-----GTA-CTTTT--AAACCCATTAAAC---TAATACTGAACTATACTCCGAAAACGAAAGTCTTTGGTTTTAATCA-ATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCACATTGCACTTTCGGGTTATGCCTGGAAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGCCTTTCTTTTT-TTGTGTA-------------------------GTCAAGAAGAGAGATGGCAGACTGTGAGGTGTCTCGCTG------ACTCC-----CTCTTCG----------GAGGAGAAGACGCGAGTCCCTTTAAATGTACGTTCGCTCTTTCTTGT-GTTTAAGATGAAGTGTGACTTTCGAA-CGCAGTGATCTGTTT-GGATCGCTT-TGCTCGAGTGGGCGACTT-CGGTTAGGACATTA-------AAGGAAGCAACCTCTATTGGCGGTATGTTAGGCT----------------------TCGGCCCGACTTTGCAGC-TGACTG----GAGTTGTTTTCT--------------GTTCTTTCCTTGAGGTGTACCT----GTCTTG-TGTGAGGCAATGGTCTGGGCAA--ATGGTTATTGTGTA-GTAGGAAGTTGCTGCTCTTAAGC-------GCTCTA--GCTTCGGTTAGAGTAAAG-G---------AGGCAACACC-AATTTGGGA-TA---GTCGTTGATTTATCAAT------GGCGCTCTTTCTAA----------------------------------------------- Pythium_dissotocum_HQ643529 ---------------------------------------------------------------------------------CCACACCA--AAAAAACTTTCCACGTGAACCGTTG-------TAACTATGT-TCTGTGCTCTCTTCTC-----------------GGAGAGA--------------GCTGAACG---AAGGTGG-GCTGCTT-----------------AATTGTAGTCT--GCCGAT-----GTA-CTTTT--AAACCCATTAAAC---TAATACTGAACTATACTCCGAAAACGAAAGTCTTTGGTTTTAATCA-ATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCACATTGCACTTTCGGGTTATGCCTGGAAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGCCTTTCTTTTT-TTGTGTA-------------------------GTCAAGAAGAGAGATGGCAGACTGTGAGGTGTCTCGCTG------ACTCC-----CTCTTCG----------GAGGAGAAGACGCGAGTCCCTTTAAATGTACGTTCGCTCTTTCTTGT-GTTTAAGATGAAGTGTGACTTTCGAA-CGCAGTGATCTGTTTTGGATCGCTT-TGCTCGAGTGGGCGACTTTCGGTTAGGACATTA-------AAGGAAGCAACCTCTATTGGCGGTATGTTAGGCT----------------------TCGGCCCGACTTTGCAGC-TGACTG----GAGTTGTTTTCT--------------GTTCTTTCCTTGAGGTGTACCT----GTCTTG-TGTGAGGCAATGGTCTGGGCAA--ATGGTTATTGTGTA-GTAGGAAGTTGCTGCTCTTAAGC-------GCTCTA--GCTTCGGTTAGAGTAAAG-G---------AGGCAACACC-AATTTGGG--TT---TTCGTTGATTTATCAAT------GGCGCTCTTTCTAATGGACCTGAATCAGGC------------------------------- Pythium_heterothallicum_GU645206 ----------------------------------------------------------------------AAGGATCATTACCACACCT--AAAAAACTTTCCACGTGAACTGTCAA---ACCTGTT-CTGTGCTTGTGCTGGGTCTG---CGTTT--------TCGGACGCGGA--CACGGCAGAGGCTGAACG---AAGGCTGGTTTCATT------------------TGTATGAGATCAGCTGAT-----ATATTTTTC-AAACCCCTTTTAC--AAAATGACTGATCAATACTGTGAGAACGAAAGTTCTTGCTTTAAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTTCGGGTTAGACCTGGAAGTATGTCTGTATCAGTGTCCGTACATCAAACTTGCCTCTCTTTTTTCTGTGTA-------------------------GTCAGGATTGGAGATGTGCAGATGTGAAGTGTCTCGCGC------ACTTGCGTCTTC-------------GGACGACAAGCTGTCGAGTCCTTTTAAAACGACAC--GATCTTT-CTAT-TGTTTCTGTGAAGCGTATTGCTCG-AACGCGGTGATTT---TCGGATCGCTC--GCAGTCGTCGGCGACTT-CGGCGAGAACATAA-------A-GGAGGAAACCTCAATTCGCGGTATGTTCGGCT----------------------TCGGCTCGACAATGTTGCTT-ATTG---TGTGTGGAAT-CT--------------GTTTTCGCCTTGAGGTGTACTG----ATGGT--TGTGTGCTTGAACTGGGAGTTG--GTG--TGTAGTAGA-GTGGTGC-AGCATGCATGGTTAC-------GCC------TTTTAT-----ATAGAG-AGAT----GTCTATTTGGGA-AAGTT-GTACTG---TTTGGCAAGCATC------TTGCCGACTGTATCTCAATGGA------------------------------------------- Pythium_intermedium_AB512966 ---------------------------------------------------------------------------------CCACACCT--AAAAAACTTTCCACGTGAACTGTCATTATTTGTTGTGCGCTCTCTGCGGTGTCGGTGGCGTCTGTTGGCTGTATTTGATACTGCTGGCGGGTGCGAGCCGGATGCA-GAGGCTGAACGAAGGTCGAGTT-----------GCTTTGCTCTCGGCTGAC------TTATTTTT-CAAACCCAATACCC--AACTTACTGATT-ATACTGTGAGAACGAAAGTTCTTGCTTTTAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTCCTTCTGTGTA-------------------------GTCAGTGGAGGATGTGG-CAGACGTGAAGTGTCTCGCTGTGGCTGGTTTTTGGTCGTTTCGGCT------ATGAATACAGTTTGCGAGTCCTTTTAAATGGACACG-ACTTTCTCTTTTTTGTTTCTGCGAGGTGCTGTGCTCGAA-CGCGGTGGTTT---TCGGATCGCTC--GCGGCTGTTGGCGACTT-CGGTGAATGCATT--------ATGGAGTG{GT}ACCTCGATTCGCGGTATGTTGGGCT----------------------TCGGCTGGACAATGTTGC-TTATTG---TGTGTTTGTT-CC--------------GCGTTCGCCTTGAGGTGTACTT----TCTGC--TGTGTGCTTGAACTGGGATCTGCTTTGTTAGTAGTGCG-CGGTGATCGTTATTCGCGGGGACATCTGTTGTTGTGCATGCTCTTAGTGTGTGCTTGAGCA----GAAGAGAGGTTTGAATTTGGGAAAG---TAGTGTACTGTGGCGTTAATC--GCTGTGTGTACATCTCAA------------------------------------------- Pythium_irregulare_MF765706 ---------------------------------------------------------------------------------CTTTGGTGT-TTGCGAGTGTGTGTGTTGTCGGTGCGCAGACTGAACGAAGGTCGTGTGTT-GCTGTGTGCCTGCTGCA-----CTGCTGACTTT-----GCATTGATTTGCATGGTGTTGGCGGAGCGGCGGGTGCT------------GT-TGCATGCGCGGCTGAC-----CTATTTTTTTCAAACCCCATACCT--AAATGACTGATT-ATACTGTGAGAACGAAAGTTCTTGCTTTTAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAAACTTGCGTTTCTTCCTTCCGTGTA-------------------------GTCGGTGGAGGAGAGTTGCAGATGTGAAGTGTCTCGCTGT-----GGTTG--GTGTTTGTTGTTTGCAATGAATGCACAGCTTGCGAGTCCTTTTAAATGGACACG-ACTTTCTCTTTTTTGTATGTGCGCGGTGCTGTGCGTGAA-CGCGGTGGTTT---TCGGATCGCTC--GCGGCTGTCGGCGACTT-CGGTGAATGCATA--------ATGGAGTGGACCTCGATTCGCGGTATGTTGGGCT----------------------TCGGCTGGACAATGTTGC-TTATTG--T-GTGTCTGTT-CC--------------GTGTTCGCCTTGAGGTGTACTG----ATGGC--TGTGGGATTGAACTGGTTACTG--TTGTTAGTAGTGTGTGTAGCACGTTGTCGTGGATGCATCTGTGTTTT---TGCATACTTGTGTGTGTGCAATTGT--ACAGAAGAGGAGTCTCAATTT---------------------------------------------------------------------------------------------- Pythium_mastophorum_MG593942 ---------------------------------------------------------------------------------------------------------GAAACTAGTTT-------TGTGCCGGGTTGTGTGCGTTCTTAAC-----------------GGAACAAGC-----GCGGCCTGGTAAACG---AAGGCGAGTTGTTTTTCCTTTATTG-------GAGAGACGGCGTGGCTGAT-----TTATTTTTC--AAACCCATTACCT---AAATACTGATG-ATACTGTGAGGACGAAAGTCTTTGCTTTTA-CTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAACCA-CCTTGCCTCTCTTTGTTTTGTGTGTGTTGCTCTTTATTGGGCGATGCGTGCGGGGTATCGAGATGG-CAGATTTGAAGTGTCTCGCCTGTTGGGTGTTTTTTTCATTTTTGAATG--AAATGCCACAACTGGGCGAGTCCTTTTAAACGAACAC--GACTGTTCTGCTGTTTTCTGCAAAAGTGCGGCGCTCGAAAAGC-GTGGTTCCATTGGGAT-GCTG---CAGTCGGCCGGGACCT-TGGCGGATGCGTGTGGGATGGAGAGAGACAGACTCGACTCGCGGTACGTTAGGGTGAGTGCTTTATTCGTAAGGCGTTCGTTCGAACAATGTTGCGTGTTGGGTGTTTGTTTTTTTCTTTCTCGCGTGAAGCGCGTTTGCTTTGAGGTGTACTGTGCCATTGTACTGTGGGTTTGAACCTGGTGTGTGACTGTTTAGCGAAGTAGCGTGCTGTTTTTGTTTTGTGGAAATA--CGCTGTTTGTTTCTGCCAAGTGTGGAGACGAG---TGGAGTAAAGCGTTCGGTTGGAATATTTGGGAAATAAATGTGCATGTGTATCACTGCGGTAATCCTTGCGGACTCTTTGATTTAATTATTGAAAGGTGTGCGAGTTTT----- Pythium_middletonii_KT247396 ------------------------------------------------------------------------------------TGTCTT-ACGAGATTCGCGCCGTGACGTGTGT-TGTCGCTGTGTGTGC-----TGTATTTATATCGTGCGCA---------TGGTGTCGAC-TGCGTGGGTCGGCTGATCG---AAGGTCGCGTTGTGCTTTAT-------------TGCGCATTGT-GGCTGAC-----TTATTCTTT-CAAACCCATTTCTT---TATTACTGATTCATACTGTGAGGACGAAAGTCTTTGCTTTTA-CTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTTCGGGTTATACCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAAACTTGCCTCTCTTTGT-CGGTGTA-------------------------GTCCGGCTTGGAGT-GCGCAGATGTGAAGTGTCTCGCG----CTACGTC-----AGTCTTTAT--------TGTACTAGGCGCGCGAGTCCTTTTAAATGGACAC--GATCTTTCTATT-GCTTTCTGCGGAGCGCATCATTTGAA-CGCGGCGGTCT---TGGGATCGCCT--GCAGTCGATAGCGACTT-TGGTAGAGACAT---------ATGGAAGAACCCTCATTTCGCGGTACGTTAGGCT----------------------TCGGCTCGACAATGTTGCGTAGTGA--GTGTGTTGTT--TC--------------GTCTTTGCTTTGAGGTGTACTG----TCGGT--TGTGGGCTTGAACCCAA-GTATT-GTGT-GTTAGTAGA-GT-GTGTCGAT---TTCTGTGGTTA-----GCGTCTATGTGTGGCTTTATGTCGTACGTAG----GTAGAAGGGTAT-CATTTGGGA-AA---CATTGTACTGCGC---GCTGCAAGGCGTGTGTGT-------------------------------------------------- Pythium_periplocum_HQ643743 ---------------------------------------------------------------------------------CCACACCT--AAAAAACTTTCCACGTGAACCGTTA-------TAACTATGT-TCTGTGCTTCGTCTTC----------------TTGTAAGATTT--------GAGGCTGAACG---AAGGTGAGTCTGCGTCTATTT----------TGGATGCGGATT-TGCTGAT-----GTT-ATTTT-AAACACCTATTACT---TAATACTGAACTATACTCCGAATACGAAAGTTTTTGGTTTTAACAA-TTAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTTCGGGTTATGCCTGGAAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGTCTTTCTTTTT-TTGTGTA-------------------------GTCAAAATTAGAGATGGCAGAATGTGAGGTGTCTCGC--------GTTGT-----CTTTTTT----------AA---GATGGTTCGAGTCCCTTTAAATGTACGTTGATTCTTTCTTGT-GTCTG---CGAATTGCGACGCTATGCTCTTTGTGATCGGTTT-AGATTGCTT-TGCGCTGGTGGGCGACTT-CGGTTAGGACAT---------ATGGAAGCAACCTCAATTGGCGGTATGTTCGGCT----------------------TTG-CCTGACGTTA-AGC-TAAGCG---AGTGTGGTTTTCT--------------GTCTTTTCCTTGAGGTGTACCT----ATTGTG-TGTGAGGT--TGATGTAGACTAT-ATGGTTGCTTGGTT-GTGTGGTTTAGC-GTTTTCAGAC-------GCCTG----CTTCGG--TAGGTAAAG-G---------AGACAACACC-AATTTGGGACTG---AGAGTTATTTTGTTT--------CTCTCTTTTTCACTTTGGACCTGATATCAGGTAAGACTACCCGCTGAACTTAAG------- Pythium_prolatum_HQ643754 ---------------------------------------------------------------------------------CCACACC----AAAAACTTTCCACGTGAACTGTCT-------TAAC-ATGT-TTTGTGCCTTTAATTA-----------------GG--------------------CTAAACG---AAGGTCG-------------------------GAGTAAAATCT-GGCTGAT-----TTATCTTTT-TAAACCCCTTACTT---AATTACTGATTTATACTGTGAGGACGAAAGTCTTTGCTTTTAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTTCGGGTTATACCTGGAAGTATGTCTGTATCAGTGTCCGTACAATAAACTTGCCTTTCTTTTT-CTGTGTA-------------------------GTCAGTGAGAGAGATGGCCGA-TGTGAAGTGTCTCGATC------TGTGCATATATTTTTTA----------TGACACATTGATCGAGTCCTTTTAAATGTACACT-GTTTTTTCTCTG-GTTTCT-ATGAGGTAC--TGCTCGAA-CGGAGTGATCT-TGT--GATTGCTTGCATGTTTGGTGGCAACTT-CGGTTTAGACGCT--------AGGGGTTAATGCTCGATTCGCGGTATGTTAGGCT----------------------TCGGCTGGACAATGTTGC-TTATTA---GGCGTTGACT-CT--------------GTTTTTACCTTGAGGTACCATT----AT-TTG-TGTGAGATGTGTCTATGGATTGC-TTGCAAGTAAGGTG-TTGCTTGATAGTTACGCTTTGAT-------GTTGCT--TTTCGGAGCGGTATTAAG-GTT------GAGATAAGCAC-AATTTGGGAAAA---TTTTGTACACTGTTATGTATGTAACTGTGTATCTCAATTGGACCTGATATCAGACAAGACTACCCGCT---------------- Pythium_spinosum_KU208343 ------------------------------------------------------------------------------------TGGTGT-TTG-GAGT---CGTGTGGCAGTTGC---GACTGA-CGAAGGTTGTGTGT--GTTATGT-CCTGCTGCA-----CTGCTGACTT------GCATC-ATTTGTATGGT-CTGGCGGAGTGGCGGGTCCT------------GT--GCATGCGCAGCTGAC-----TTATTTTTT-CAAACCCCATACCT--AAATGACTGATT-ATACTGTGAGAACGAAAGTTCTTGCTTTAAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATACCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAAACTTGGCTTTCTTCCTTCCGTGTA-------------------------GTCGGTGGAGGAGAGTTGCAGATGTGAAGTGTCTCGCTAT-----GGTTG--GCATTTGT-------AATGAATGCACAGCTTGCGAGTCCTTTTAAATGGACACG-ACTTTCTCTTTTTTGTATCTGCGTGGTGCTGTGTATGAA-CGCGGTGGTTT---TCGGATCGCTC--GCGGCTGTCGGCGACTT-CGGTGAATGCATT--------ATGGAGTGGACCTCGATTCGCGGTATGTTGGGCT----------------------TCGGCTGGACAATGTTGC-TTATTG--T-GTGTTTGTT-CC--------------GTGTTCGCCTTGAGGTGTACTG----GTAGT--TGTGGGATTGAACTGGTTACTG--TTGTTAGTAGTGTG--TAGTGCGTTGTCGTGGATGCATCTGTCTTTT----GTGCACTTTTGTGTGTGCAGTTGA---TAGAAGAGGAGTTTGAATTTGGGAAA---TTAGTGTACTGTGGGTTAATCCTGCGTGTATATCTCAATGGAC------------------------------------------ Pythium_torulosum_JN630493 ---------------------------------------------------------------------------------CCACACCA--TAAAAACTTTCCACGTGAACCGTTA-------CAATTATGT-TCTGTGCTCTCT-CTC-----------------GG-GAGG--------------GCTGAACG---AAGGTAGAGCTGCATGTAA-------------AAGTGCGGTTT-TGCCGAT-----GTA-CTTTT--AAACCCATTACAC---TAATACTGAACTATACTCCGAGAACGAAAGTTTTTGGTTTTAATCA-ATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCACATTGCACTTTCGGGATATTCCTGGAAGTATGCTTGTATCAGTGTCCGTACATCAAACTTGCCTTTCTTTTT-TTGTGTA-------------------------GTCAAGGAGAGAAATGGCAGAATGTGAGGTGTCTCGCTG------ACTCC-----CTCTTCG----------GAGGAGAAGACGCGAGTCCCTTTAAATGTACGTTCGCTCTTTCTTGT-GTCTGAGATGAAGTGTGACTTTCGAA-CGCAGTGATCTGTTT-GGATCGCTT-TGCGCGAGTGGGCGACTT-CGGTTAGAACATTA-------AAGGAAGCAACCTCTATTGGCGGTATGTTAGGCT----------------------TCGGCCCGACTTTGCAGC-TGACAG---TGTGTTGTTTTCT--------------GTTCTTTCCTTGAGGTGTACCT----GTCTTG-TGTGAGGCAACGGTCTGAGCAA--ATGGTTATTGTGTA-GTAGAATTTTGCTGCTCTTGGAC-------GCCCT----ACTCG--TAGGGTAAAG-G---------AGGCAACACC-AATTTGGGACTA---GT--CTGTTTCGGCA--------GGCGCATTTTCAATTTGGACCTGATATCAAGCAAGATTACCCGCTGAACTTAAG------- Pythium_ultimum_ultimum_MK326541 -----------------------------------------GTACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACCACACTTTAAAAAAACTGTCCACGTGAACTGTAAGCAAGTCTAGCGCTGTCACTGAGCTGGTGTTTTCCAATATATA-TATATTGGACACTGGAACG-GGAGTCAGCAGGACG---AAGGTTGGTCTCTTGTAATGCAAGT--------TATGAGAGACTAGCTGATGAACTTTTCTTTTT-AAACCCTTCTTACCTAAATATACTGATTTATACTGTGGGGACGAAAGTCCTTGCTTTTA-CTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTTCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAAACTTGCCTTTCTTTTT-CTGTGTA-------------------------GTCAGGGATGGA-ATGTGCAGATGTGAAGTGTCTCGCAT------GGTTGCGTTCGTTTTTC--------GAGCGACAATCTGTCGAGTCCTTTTAAATGGACAC--GGTCTTTTCTAT-GGTTTCTATGAAGTGTAATGCTCGGAAGGCAGTGATTT---TCGGATCGCTG--GCGGCTTTTGGCGACTT-CGGTATGAACGTGT-------ATGGAGACTACCTCAATTCGCGGTATGTTAGGCT----------------------TCGGCTCGACAATGTTGCGTAATTGT-ATGTGTGGTCT-TT--------------GTTTGTGCCTTGAGGTGTACTA----GAGGT--TGTCGGTTTGAACCGTAGGTGA--TTG--TTTAGTAGA-GCATTTTCGCGATGTATGGAGAC-------GCTGC---ATTTGGTTGC--GTAGAG-AGA------TTGATTTGGGA-AATTTTGTATCA---TT-AGCAATTGCAAG---ATTGTGTATGGTATCTCAATTGGACCTGATATCAGACAAGACTACCCGCTGAACTTAAGCATACAT Pythium_violae_HQ643967 ---------------------------------------------------------------------------------CCACACCT--AAAAA-CTTTCCACGTGAACCGTCAAGTAATAGATT-CAGTGCCTCTGCTGTGGCTGTGGCGTTT--------TCGGACGCTGCGCTGTGGCGGAGGAGGAACG---AAGGTTGGTCTTGTGCGTGCACAGCAATGTGTGTGTGCGGGACTGGCTGAT-----CTATTTTTT-TCAAACCCCATAC--AAAATGACTGATTTATACTGTGAGAACGAAAGTTCTTGCTTTTAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTCGTCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAAACTTGCCTTTCTTTTT-CTGTGTA-------------------------GTCAGGAGAAGATGAGTGCAGATGTGAAGTGTCTCGCTG------GCCTGCTTCTCTCTTTGGG------GAGTGGACAGGTATCGAGTCCTTTTAAAACGACAC--GATCTTT-CTAC-TGTTACTGAGAAGTGTGACGCTCG-AATGCGGTGGTCT---TCGGATCGCGT--GCAGTTGTCGGGGTCCT-CGGCGTGAACATAT---------GGAGGAAGCCTCGATTCGCGGTATGTTATGCT----------------------TCGGCTGTACAATGTTGCGTGATTG---GGAGTGGAAT-TC--------------GTTTGTGCCTTGAGGTGTACTG----ACGGT--TGTGTGCTTGAACTGGAGGTTG--TTG--TGTAGTAGA-GTGTTGT-GTGATGTACAGCGAC-------GCCACTTCATTTTGTTGTGGGTAGAG--GAC----GTCTATTTGGGA-AAGAA-GTAGTA---TC-GGCAGCTTTTGGTA-GTTGAAGGTAGTATCTCAATTGGACCTGATATCAGACAAGACTACCC------------------- ; END; BEGIN TREES; TITLE Pythium_and_Phytophthora; LINK TAXA = Taxa1; TRANSLATE 1 Pythium_acanthophoron_KJ524516, 2 Pythium_acrogynum_MK794932, 3 Pythium_aphanidermatum_AJ233438, 4 Pythium_aquatile_HQ643445, 5 Pythium_catenulatum_FJ917394, 6 Pythium_cylindrosporum_AY083591, 7 'Globisporangium ultimum ultimum DBC755_MN727090', 8 Pythium_diclinum_GU233301, 9 Pythium_dissotocum_HQ643529, 10 Pythium_heterothallicum_GU645206, 11 Pythium_intermedium_AB512966, 12 Pythium_irregulare_MF765706, 13 Pythium_mastophorum_MG593942, 14 Pythium_middletonii_KT247396, 15 Pythium_periplocum_HQ643743, 16 Pythium_prolatum_HQ643754, 17 Pythium_spinosum_KU208343, 18 Pythium_torulosum_JN630493, 19 Pythium_ultimum_ultimum_MK326541, 20 Pythium_violae_HQ643967; TREE Imported_tree_1 = [&R] (((((6:0.01120525,12:0.0052233):0.01123737,17:0.01966246):0.07280897,11:0.06606435):0.07151198,((7:0.02234526,19:0.0):0.08119222,(10:0.06036147,20:0.08848444):0.02291315):0.02643401):0.00537119,(13:0.17223604,(2:0.08454719,14:0.0616866):0.05084203):0.02580438,(16:0.12126559,((1:0.0047102,15:0.00510075):0.09051038,(3:0.02598356,((5:8.8891E-4,18:0.00400257):0.02229574,(4:0.00680136,(8:0.0,9:0.0):0.00632955):0.01137347):0.01345282):0.0334335):0.09136861):0.03288268); END;