#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on March 28, 2024; 19:25 GMT TreeBASE (cc) 1994-2008 Study reference: Christova P., Kostov K.V., Lyubenova A., & Slavov S. 2020. Phytophthora sp. kelmania x P. sansomeana – a new hybrid from subclade 8a found in Bulgaria. Mycologia, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S26232] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=17; TAXLABELS Phytophthora_cryptogea_CBS113.19 Phytophthora_cryptogea_CBS290.35 Phytophthora_drechsleri_CBS292.35 Phytophthora_erythroseptica_CBS129.23 Phytophthora_medicaginis_CBS117685 Phytophthora_primulae_P10333 Phytophthora_pseudocryptogea_VHS16118 Phytophthora_ramorum_P10301 Phytophthora_samsomeana_NBRC31624 Phytophthora_sansomeana_CBS957.87 Phytophthora_sp._RLKam2016_61c_Tub_allele_1 Phytophthora_sp._RLKam2016_61c_Tub_allele_2 Phytophthora_sp._RLKam2016_61c_Tub_allele_3 Phytophthora_sp._RLKam2016_61c_Tub_allele_4 Phytophthora_sp._RLKam2016_63b Phytophthora_sp._kelmania_10613 Phytophthora_sp._kelmania_GF543 ; END; BEGIN TAXA; TITLE Taxa2; DIMENSIONS NTAX=14; TAXLABELS Phytophthora_cryptogea_CBS113.19 Phytophthora_cryptogea_CBS290.35 Phytophthora_drechsleri_CBS292.35 Phytophthora_erythroseptica_CBS129.23 Phytophthora_medicaginis_CBS117685 Phytophthora_primulae_P10333 Phytophthora_pseudocryptogea_VH16118 Phytophthora_ramorum_P10301 Phytophthora_samsomeana_NBRC31624 Phytophthora_sansomeana_CBS957.87 Phytophthora_sp._RLKam2016_61c Phytophthora_sp._RLKam2016_63b Phytophthora_sp._kelmania_GF543 Phytophthora_sp._kelmania_P10613 ; END; BEGIN TAXA; TITLE Taxa3; DIMENSIONS NTAX=23; TAXLABELS Phytophthora_cryptogea_CBS113.19 Phytophthora_cryptogea_CBS290.35 Phytophthora_drechsleri_CBS292.35 Phytophthora_erythroseptica_CBS129.23 Phytophthora_medicaginis_CBS117685 Phytophthora_primulae_P10333 Phytophthora_pseudocryptogea_VH16118 Phytophthora_ramorum_P10301 Phytophthora_sansomeana_CBS957.87 Phytophthora_sansomeana_NBRC31624 Phytophthora_sp._RLKam_61c_allele_1 Phytophthora_sp._RLKam_61c_allele_10 Phytophthora_sp._RLKam_61c_allele_2 Phytophthora_sp._RLKam_61c_allele_3 Phytophthora_sp._RLKam_61c_allele_4 Phytophthora_sp._RLKam_61c_allele_5 Phytophthora_sp._RLKam_61c_allele_6 Phytophthora_sp._RLKam_61c_allele_7 Phytophthora_sp._RLKam_61c_allele_8 Phytophthora_sp._RLKam_61c_allele_9 Phytophthora_sp._RLKam2016_63b Phytophthora_sp._kelmania_GF543 Phytophthora_sp._kelmania_P10613 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M55859] TITLE Phytophthora_ITS; LINK TAXA = Taxa3; DIMENSIONS NCHAR=716; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Phytophthora_cryptogea_CBS113.19 TTTTAATTTGGGGGCTTCCGTCTGGCCGGCCGGTTTTCGGCTGGCTGGGTGGCGGCTCTATCATGGCGACCGCTTGGGCCTC--GGCCTGGGCTAGTAGCGTATTTTT-AAACCCATTCCTAATTACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACACTAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGG-ACGCGCAGATGTGAAGTGTCTTGCGGCTGGTCTTCGGTCCGGCTGCGAGTCCTTTGAAATGTACTACACTGTACTTCTCTTTGCTCGAAAAGCGTGACGTTGCTGGTTGTGGAGGCTGCCTGTGTGGCATGTCGGCGACCGGTTTGTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAG-ACGCTTATTGGGTGCTTTTCCTGCTGTGGCTGGATGGACTGGTGAACCGTAGCTGTGCTAGGCTTGGCGTTTGAACCGGCGGTGTGGTGCGAAGTAGGGTG---TCTGTTCTGGCGTAAGCTGGGGTGGACG Phytophthora_cryptogea_CBS290.35 TTTTAATTTGGGGGCTTCCGTCTGGCCGGCCGGTTTTCGGCTGGCTGGGTGGCGGCTCTATCATGGCGACCGCTTGGGCCTC--GGCCTGGGCTAGTAGCGTATTTTT-AAACCCATTCCTAATTACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACACTAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGG-ACGCGCAGATGTGAAGTGTCTTGCGGCTGGTCTTCGGTCCGGCTGCGAGTCCTTTGAAATGTACTACACTGTACTTCTCTTTGCTCGAAAAGCGTGACGTTGCTGGTTGTGGAGGCTGCCTGTGTGGCATGTCGGCGACCGGTTTGTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAG-ACGCTTATTGGGTGCTTTTCCTGCTGTGGCTGGATGGACTGGTGAACCGTAGCTGTGCTAGGCTTGGCGTTTGAACCGGCGGTGTGGTGCGAAGTAGGGTG---TCTGTTCTGGCGTAAGCTGGGGTGGACG Phytophthora_drechsleri_CBS292.35 TTTTAAATTGGGGGCTTCCGTCTGGCCGGCCGGTTCTCGGCTGGCTGGGTGGCGGCTCTATCATGGCGACCGCCTGGGCCTC--GGCCTGGGTTAGTAGCGTATTTTTTAAACC-ATTCCTAATTACTGAAAAAACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACGCTAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGG-ACGCGCAGATGTGAAGTATCTTGCGGCTGGTCTTCGGTCCGGCTGCGAGTCCTTTTAAATGTACTACACTGTACTTCTCTATGCTCGAAAAGCGTGACGTTGCTGGTTGTGGAGGCTGCCTGTGTGGCATGTCGGCGACCGGTTTGTCTGCTGCGGCGTTTTAATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAG-ACGCTTATTGGGTGCTTTTTCTGCTGCGGCGGGATGGACTGGTGAACCGTAGCTGTGCTAGGCTTGGCGTTTGAACCGGCGGTATTGTGCGAAGTAGGGTG---TCTGTCTCGGCGCAAGCTGGGGTGGGCG Phytophthora_erythroseptica_CBS129.23 TTTTAATTTGGGGGCTTCCGTCTGGCCGGCCGGTTTTCGGCTGGCTGGGTGGCGGCTCTATCATGGCGACCGCTTGGGCCTC--GGCCTGGGCTAGTAGCGTATTTTT-AAACCCATTCCTAATTACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACACTAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGCGCAGATGTGAAGTGTCTTGCGGCTGGTCTTCGGTCCGGCTGCGAGTCCTTTGAAATGTACTACACTGTACTTCTCTTTGCTCGAAAAGCGTGACGTTGCTGGTTGTGGAGGCTGCCTGTGTGGCATGTCGGCGACCGGTTTGTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAG-ACGCTTATTGGGTGCTTTTCCTGCTGTGGCTGGATGGACTGGTGAACCGTAGCTGTGCTAGGCTTGGCGTTTGAACCGGCGGTGTGGTGCGAAGTAGGGTG---TCTGTTCTGGCGTAAGCTGGGGTGGACG Phytophthora_medicaginis_CBS117685 TTTTAAATTGGGGGCTTCCGTCTGGCCGGCCGGCTTTCGGCTGACTGGGTGGCGGCTCTATCATGGCGACCGCTTGGGCCTC--GGCTTGGGCTAGTAGCTT--CTTTTAAACCCATTCCTAATTACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACAATAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGCGCAGATGTGAAGTGTCTTGCGGCTGGTCTTCGGTCCGGCTGCGAGTCCTTTGAAATGTACTAAACTGTACTTCTCTTTGCTCGAAAAGCGTGACGTTGCTGGTTGTGGAGGCTGCCTGTGTGGCATGTCGGCGACCGGTTTGTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAG-ACGCTTATTGGGTGCTTTTCCTGCTGTGGTGGGACGGACTGGTGAACCGTAGCTGTACTAGGCTTGGCGTTTGAACTGGCGGTGTGGTGCGAAGTAGGGTG---TCTGTTCCGGCGCAAGCTGGGGTGGGCG Phytophthora_primulae_P10333 TTTTTTATTGGGGGCTGCTGACTGG---ACTGGCTTCGGCTGGACTGGGTGGCGGCTCTAGC---GCGACCGTTCTGGGCTTCGGCTTGGGGCTAGTAGCTTTCTTTTTAAACCCATTCTTAATTTACTGAAATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTCGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACAATAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGATGC-CAGATGTGAAGTGTCTTGCGACTGGACTTTGATCTAGATGCGAGTCCTTTTAAATGTACTAAAACTGTATTCTCTTTGCTCGAAAAGCGTGACGTTGCTGGTTGTGGAGGCTGCCTGTATGGCCAGTCGGCGACCGGTTTGTCTGCTGCGGTGTTT--ATGGAGAAGTGTTTAATTCGCGGTATGGTTGGCTTCGGCTGAACAATGCGCTTATTAAATGTTTTTCTTACTGTGGC-GGATAGACTGGTGAACCGTAGCTGTG-TAGGCTTGGCCTTTGAACCGGTGATATTGTGCGAAGTAGAGTGACGGCTGTTCCGGCGCAAGCTGGGGTGGCTG Phytophthora_pseudocryptogea_VH16118 TTTTAAATTGGGGGCTCCCGTCTGGCCGGCCGGTT{CT}TCGGCTGGCTGGGTGGCGGCTCTATCATGGCGACCGCTTGGGCCTC--GGCCTGGGCTAGTAGCGTATTTTTTAAACCCATTCCTAATTACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACACTAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGCGCAGATGTGAAGTGTCTTGCGGCTGGTCTTCGGTCCGGCTGCGAGTCCTTTGAAATGTACTACACTGTACTTCTCTTTGCTCGAAAAGCGTGACGTTGCTGGTTGTGGAGGCTGCCTGTGTGGCATGTCGGCGACCGGTTTGTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGATTGGCTTCGGCTGAACAG-ACGCTTATTGGGTGCTTTTCCTGCTGTGGCTGGATGGACTGGTGAACCGTAGCTGTGCTAGGCTTGGCGTTTGAACCGGCGGTGTGGTGCGAAGTAGGGTG---TCTGTTCCGGCGCAAGCTGGGGTGGACG Phytophthora_ramorum_P10301 CCCTTAGTTGGGGGCTTCTGTTCGGCTGGC-----TTCGGCTGGCTGGGCGGCGGCTCTATCATGGCGAGCGCTTGAGCCTTCGGGTCTGAGCTAGTAGCCCACTTTTTAAACCCATTCCTAAATACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGCCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGTGCAGACGTGAAGTGTCTTGCGATTGGTCTTCGGGCCGGCTGCGAGTCCTTTGAAATGTACAGAACTGTACTTCTCTTTGCTCGAAAAGCATGACGTTGTTGGTTGTGGAGGCTGCCCGTGTGGCCAGTCGGCGACCGGTTTGTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTAGCTTCGGCTGAACAATGCGCTTATTGGATGCTTTTTCTGCTGTGGCGGTAATGACTGGTGAACCGTAGCTGTGCAGGGCTTGGCTTTTGAATCGACGGTGTTGTGCGAAGTAGAGTG---GCGGTTC-GGCGCAAGCTGGGCTGTCGA Phytophthora_sansomeana_CBS957.87 TTTTAAATTGGGGGCTTCCGTCTGGCCGGCCGGTTTTCGGCTGGCTGGGTGGCGGCTCTATCATGGCGACCGCTTGGGCCTC--GGCCTGGGCTAGTAGCTTCTCTTTTAAACCCATTCCTAATGACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACACTAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGCGCAGATGTGAAGTGTCTTGCGGCTGGTCTTCGGTCCGGCTGCGAGTCCTTTGAAATGTACTAAACTGTACTTCTCTTTGCTCGAAAAGCGTGACGTTGCTGGTTGTGGAGGCTGCCTGTGTGGCATGTCGGCGACCGGTTTGTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAG-ACGCTTATTGGGTGCTTTTCCTGCTGTGGCGGGACGGACTGGTGAACCGTAGCTGTGCTAGGCTTGGCGTTTGAACCGGTGGTGTGGTGCGAAGTAGGGTG---TCTGTCTTGGCGCAAGCTGGGGTGGGCG Phytophthora_sansomeana_NBRC31624 TTTTAAATTGGGGGCTTCCGTCTGGCCGGCCGGTTTTCGGCTGGCTGGGTGGCGGCTCTATCATGGCGACCGCTTGGGCCTC--GGCCTGGGCTAGTAGCTTCTCTTTTAAACCCATTCCTAATGACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACACTAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGCGCAGATGTGAAGTGTCTTGCGGCTGGTCTTCGGTCCGGCTGCGAGTCCTTTGAAATGTACTAAACTGTACTTCTCTTTGCTCGAAAAGCGTGACGTTGCTGGTTGTGGAGGCTGCCTGTGTGGCATGTCGGCGACCGGTTTGTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAG-ACGCTTATTGGGTGCTTTTCCTGCTGTGGCGGGACGGACTGGTGAACCGTAGCTGTGCTAGGCTTGGCGTTTGAACCGGTGGTGTGGTGCGAAGTAGGGTG---TCTGTCTTGGCGCAAGCTGGGGTGGGCG Phytophthora_sp._RLKam_61c_allele_1 TTTTAAATTGGGGGCTTCCGTCTGGCCGGCCGGTTTTCGGCTGGCTGGGTGGCGGCTCTATCATGGCGACCGCTTGGGCCTC--GGCCTGGGCTAGTAGCTTCTCTTTTAAACCCATTCCTAATGACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACACTAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGCGCAGATGTGAAGTGTCTTGCGGCTGGTCTTCGGTCCGGCTGCGAGTCCTTTGAAATGTACTAAACTGTACTTCTCTTTGCTCGAAAAGCGTGACGTTGCTGGTTGTGGAGGCTGCCTGTGTGGCATGTCGGCGACCGGTTTGTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAG-ACGCTTATTGGGTGCTTTTCCTGCTGTGGCGGGACGGACTGGTGAACCGTAGCTGTGCTAGGCTTGGCGTTTGAACCGGTGGTGTGGTGCGAAGTAGGGTG---TCTGTCTTGGCGCAAGCTGGGGTGGGCG Phytophthora_sp._RLKam_61c_allele_10 TTTTAAATTGGGGGCTTCCGTCTGGCCGGCCGGTTTTCGGCTGGCTGGGTGGCGGCTCTATCATGGCGACCGCTTGGGCCTC--GGCCTGGGCTAGTAGCTTCTCTTTTAAACCCATTCCTAATGACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACACTAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGCGCAGATGTGAAGTGTCTTGCGGCTGGTCTTCGGTCCGGCTGCGAGTCCTTTGAAATGTACTACACTGTACTTCTCTTTGCTCGAAAAGCGTGACGTTGCTGGTTGTGGAGGCTGCCTGTGTGGCATGTCGGCGACCGGTTTGTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGATCGGCTTCGGCTGAACAG-ACGCTTATTGGGTGCTTTTCCTGCTGTGGCTGGATGGACTGGTGAACCGTAGCTGTGCTAGGCTTGGCTTTTGAACCGGCGGTGTGGTGCGAAGTAGGGTG---TCTGTTCCGGCGCAAGCTGGGGTGGACG Phytophthora_sp._RLKam_61c_allele_2 TTTTAAATTGGGGGCTTCCGTCTGGCCGGCCGGTTTTCGGCTGGCTGGGTGGCGGCTCTATCATGGCGACCGCTTGGGCCTC--GGCCTGGGCTAGTAGCTTCTCTTTTAAACCCATTCCTAATGACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGCCCTGGGAGTATGCCTGTATCAGTGTCCGTACACTAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGCGCAGATGTGAAGTGTCTTGCGGCTGGTCTTCGGTCCGGCTGCGAGTCCTTTGAAATGTACTAAACTGTACTTCTCTTTGCTCGAAAAGCGTGACGTTGCTGGTTGTGGAGGCTGCCTGTGTGGCATGTCGGCGACCGGTTTGTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAG-ACGCTTATTGGGTGCTTTTCCTGCTGTGGCGGGACGGACTGGTGAACCGTAGCTGTGCTAGGCTTGGCGTTTGAACCGGTGGTGTGGTGCGAAGTAGGGTG---TCTGTCTTGGCGCAAGCTGGGGTGGGCG Phytophthora_sp._RLKam_61c_allele_3 TTTTAAATTGGGGGCTTCCGTCTGGCCGGCCGGTTTTCGGCTGGCTGGGTGGCGGCTCTATCATGGCGACCGCTTGGGCCTC--GGCCTGGGCTAGTAGCTTCTCTTTTAAACCCATTCCTAATGACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGGTTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACACTAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGCGCAGATGTGAAGTGTCTTGCGGCTGGTCTTCGGTCCGGCTGCGAGTCCTTTGAAATGTACTAAACTGTACTTCTCTTTGCTCGAAAAGCGTGACGTTGCTGGTTGTGGAGGCTGCCTGTGTGGCATGTCGGCGACCGGTTTGTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAG-ACGCTTATTGGGTGCTTTTCCTGCTGTGGCGGGACGGACTGGTGAACCGTAGCTGTGCTAGGCTTGGCGTTTGAACCGGTGGTGTGGTGCGAAGTAGGGTG---TCTGTCTTGGCGCAAGCTGGGGTGGGCG Phytophthora_sp._RLKam_61c_allele_4 TTTTAAGTTGGGGGCTTCCGTCTGGCCGGCCGGTTTTCGGCTGGCTGGGTGGCGGCTCTATCATGGCGACCGCTTGGGCCTC--GGCCTGGGCTAGTAGCTTCTCTTTTAAACCCATTCCTAATGACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACACTAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGCGCAGATGTGAAGTGTCTTGCGGCTGGTCTTCGGTCCGGCTGCGAGTCCTTTGAAATGTACTAAACTGTACTTCTCTTTGCTCGAAAAGCGTGACGTTGCTGGTTGTGGAGGCTGCCTGTGTGGCATGTCGGCGACCGGTTTGTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAG-ACGCTTATTGGGTGCTTTTCCTGCTGTGGCGGGACGGACTGGTGAACCGTAGCTGTGCTAGGCTTGGCGTTTGAACCGGTGGTGTGGTGCGAAGTAGGGTG---TCTGTCTTGGCGCAAGCTGGGGTGGGCG Phytophthora_sp._RLKam_61c_allele_5 TTTTAAATTGGGGGCTTCCGTCTGGCCGGCCGGTTTTCGGCTGGCTGGGTGGCGGCTCTATCATGGCGACCGCTTGGGCCTC--GGCCTGGGCTAGTAGCTTCTCTTTTAAACCCATTCCTAATGACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACACTAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGCGCAGATGTGAAGTGTCTTGCGGCTGGTCTTCGGTCCGGCTGCGAGTCCTTTGAAATGTACTAAACTGTACTTCTCTTTGCTCGAAAAGCGTGACGTTGCTGGTTGTGGAGGCTGCCTGTGTGGCATGTCGGCGACCGGTTTGTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAG-ACGCTTATTGGGTGCTTTTCCTGCTGTAGCGGGACGGACTGGTGAACCGTAGCTGTGCTAGGCTTGGCGTTTGAACCGGTGGTGTGGTGCGAAGTAGGGTG---TCTGTCTTGGCGCAAGCTGGGGTGGGCG Phytophthora_sp._RLKam_61c_allele_6 TTTTAAATTGGGGGCTTCCGTCTGGCCGGCCGGTTTTCGGCTGGCTGGGTGGCGGCTCTATCATGGCGACCGCTTGGGCCTC--GGCCTGGGCTAGTAGCTTCTCTTTTAAACCCATTCCTAATGACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTCTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACACTAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGCGCAGATGTGAAGTGTCTTGCGGCTGGTCTTCGGTCCGGCTGCGAGTCCTTTGAAATGTACTAAACTGTACTTCTCTTTGCTCGAAAAGCGTGACGTTGCTGGTTGTGGAGGCTGCCTGTGTGGCATGTCGGCGACCGGTTTGTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAG-ACGCTTATTGGGTGCTTTTCCTGCTGTGGCGGGACGGACTGGTGAACCGTAGCTGTGCTAGGCTTGGCGTTTGAACCGGTGGTGTGGTGCGAAGTAGGGTG---TCTGTCTTGGCGCAAGCTGGGGTGGGCG Phytophthora_sp._RLKam_61c_allele_7 TTTTAAATTGGGGGCTTCCGTCTGGCCGGCCGGTTTTCGGCTGGCTGGGTGGCGGCTCTATCATGGCGACCGCTTGGGCCTC--GGCCTGGGCTAGTAGCTTCTCTTTTAAACCCATTCCTAATGACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTCTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCGTATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACACTAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGCGCAGATGTGAAGTGTCTTGCGGCTGGTCTTCGGTCCGGCTGCGAGTCCTTTGAAATGTACTAAACTGTACTTCTCTTTGCTCGAAAAGCGTGACGTTGCTGGTTGTGGAGGCTGCCTGTGTGGCATGTCGGCGACCGGTTTGTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAG-ACGCTTATTGGGTGCTTTTCCTGCTGTGGCGGGACGGACTGGTGAACCGTAGCTGTGCTAGGCTTGGCGTTTGAACCGGTGGTGTGGTGCGAAGTAGGGTG---TCTGTCTTGGCGCAAGCTGGGGTGGGCG Phytophthora_sp._RLKam_61c_allele_8 TTTTAAATTGGGGGCCTCCGTCTGGCCGGCCGGTTCTCGGCTGGCTGGGTGGCGGCTCTATCATGGCGACCGCTTGGGCCTC--GGCCTGGGCTAGTAGCGTATTTTTTAAACCCATTCCTAATTACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACACTAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGCGCAGATGTGAAGTGTCTTGCGGCTGGTCTTCGGTCCGGCTGCGAGTCCTTTGAAATGTACTAAACTGTACTTCTCTTTGCTCGAAAAGCGTGACGTTGCTGGTTGTGGAGGCTGCCTGTGTGGCATGTCGGCGACCGGTTTGTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAG-ACGCTTATTGGGTGCTTTTCCTGCTGTGGCGGGACGGACTGGTGAACCGTAGCTGTGCTAGGCTTGGCGTTTGAACCGGTGGTGTGGTGCGAAGTAGGGTG---TCTGTCTTGGCGCAAGCTGGGGTGGGCG Phytophthora_sp._RLKam_61c_allele_9 TTTTAAATTGGGGGCTTCCGTCTGGCCGACCGGTTCTCGGCTGGCTGGGTGGCGGCTCTATCATGGCGACCGCTTGGGCCTC--GGCCTGGGCTAGTAGCGTATTTTTTAAACCCATTCCTAATTACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACACTAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGCGCAGATGTGAAGTGTCTTGCGGCTGGTCTTCGGTCCGGCTGCGAGTCCTTTGAAATGTACTACACTGTACTTCTCTTTGCTCGAAAAGCGTGACGTTGCTGGTTGTGGAGGCTGCCTGTGTGGCATGTCGGCGACCGGTTTGTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGATTGGCTTCGGCTGAACAG-ACGCTTATTGGGTGCTTTTCCTGCTGTGGCTGGATGGACTGGTGAACCGTAGCTGTGCTAGGCTTGGCGTTTGAACCGGCGGTGTGGTGCGAAGTAGGGTG---TCTGTTCCGGCGCAAGCTGGGGTGGACG Phytophthora_sp._RLKam2016_63b TTTTAAATTGGGGGCTCCCGTCTGGCCGGCCGGTTTTCGGCTGGCTGGGTGGCGGCTCTATCATGGCGACCGCTTGGGCCTC--GGCCTGGGCTAGTAGCGTATTTTTTAAACCCATTCCTAATTACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACACTAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGCGCAGATGTGAAGTGTCTTGCGGCTGGTCTTCGGTCCGGCTGCGAGTCCTTTGAAATGTACTACACTGTACTTCTCTTTGCTCGAAAAGCGTGACGTTGCTGGTTGTGGAGGCTGCCTGTGTGGCATGTCGGCGACCGGTTTGTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGATTGGCTTCGGCTGAACAG-ACGCTTATTGGGTGCTTTTCCTGCTGTGGCTGGATGGACTGGTGAACCGTAGCTGTGCTAGGCTTGGCGTTTGAACCGGCGGTGTGGTGCGAAGTAGGGTG---TCTGTTCCGGCGCAAGCTGGGGTGGACG Phytophthora_sp._kelmania_GF543 TTTTAAATTGGGGGCTTCCGTCTGGCCGGCCGGTTCTCGGCTGGCTGGGTGGCGGCTCTATCATGGCGACCGCTTGGGCCTC--GGCCTGGGCTAGTAGCGTATTTTTTAAACCCATTCCTAATTACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACACTAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGCGCAGATGTGAAGTGTCTTGCGGCTGGTCTTCGGTCCGGCTGCGAGTCCTTTGAAATGTACTACACTGTACTTCTCTTTGCTCGAAAAGCGTGACGTTGCTGGTTGTGGAGGCTGCCTGTGTGGCATGTCGGCGACCGGTTTGTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGATCGGCTTCGGCTGAACAG-ACGCTTATTGGGTGCTTTTCCTGCTGTGGCTGGATGGACTGGTGAACCGTAGCTGTGCTAGGCTTGGCGTTTGAACCGGCGGTGTGGTGCGAAGTAGGGTG---TCTGTTCCGGCGCAAGCTGGGGTGGACG Phytophthora_sp._kelmania_P10613 TTTTAAATTGGGGGCTTCCGTCTGGCCGGCCGGTTCTCGGCTGGCTGGGTGGCGGCTCTATCATGGCGACCGCTTGGGCCTC--GGCCTGGGCTAGTAGCGTATTTTTTAAACCCATTCCTAATTACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACACTAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGCGCAGATGTGAAGTGTCTTGCGGCTGGTCTTCGGTCCGGCTGCGAGTCCTTTGAAATGTACTACACTGTACTTCTCTTTGCTCGAAAAGCGTGACGTTGCTGGTTGTGGAGGCTGCCTGTGTGGCATGTCGGCGACCGGTTTGTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGATCGGCTTCGGCTGAACAG-ACGCTTATTGGGTGCTTTTCCTGCTGTGGCTGGATGGACTGGTGAACCGTAGCTGTGCTAGGCTTGGCTTTTGAACCGGCGGTGTGGTGCGAAGTAGGGTG---TCTGTTCCGGCGCAAGCTGGGGTGGACG ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M55860] TITLE Phytophthora_COXI; LINK TAXA = Taxa2; DIMENSIONS NCHAR=619; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Phytophthora_cryptogea_CBS113.19 GTTGGTACAACATTATCTCTTTTAATCCGAATGGAATTAGCACAACCAGGTAATCAAATTTTTATGGGAAATCATCAATTATATAATGTTGTTGTTACCGCCCACGCTTTTATAATGGTTTTCTTTTTAGTTATGCCTGCATTAATTGGTGGTTTTGGTAATTGGTTTGTTCCTTTAATGATAGGTGCTCCTGATATGGCGTTTCCACGTATGAATAATATAAGTTTTTGGTTATTACCACCAGCATTATTATTATTAGTTTCTTCAGCTATTGTTGAATCAGGAGCAGGTACAGGTTGGACTGTTTATCCACCATTATCTAGTGTACAAGCACACTCAGGACCATCAGTAGATTTAGCTATTTTTAGTTTACATTTAACAGGTATTTCTTCGTTATTAGGTGCAATTAACTTTATTTCAACTATTTATAACATGAGAGCTCCAGGTTTAAGTTTTCATCGATTACCTTTATTTGTTTGGTCTGTATTAATTACAGCTTTTCTTTTATTATTAACGTTACCTGTATTAGCCGGAGCAATTACCATGTTGTTAACTGATAGAAATTTAAATACTTCTTTTTATGATCCATCTGGTGGAGGTGATCCTGTATTATATCAA- Phytophthora_cryptogea_CBS290.35 GTTGGTACAACATTATCTCTTTTAATCCGAATGGAATTAGCACAACCAGGTAATCAAATTTTTATGGGAAATCATCAATTATATAATGTTGTTGTTACCGCCCACGCTTTTATAATGGTTTTCTTTTTAGTTATGCCTGCATTAATTGGTGGTTTTGGTAATTGGTTTGTTCCTTTAATGATAGGTGCTCCTGATATGGCGTTTCCACGTATGAATAATATAAGTTTTTGGTTATTACCACCAGCATTATTATTATTAGTTTCTTCAGCTATTGTTGAATCAGGAGCAGGTACAGGTTGGACTGTTTATCCACCATTATCTAGTGTACAAGCACACTCAGGACCATCAGTAGATTTAGCTATTTTTAGTTTACATTTAACAGGTATTTCTTCGTTATTAGGTGCAATTAACTTTATTTCAACTATTTATAACATGAGAGCTCCAGGTTTAAGTTTTCATCGATTACCTTTATTTGTTTGGTCTGTATTAATTACAGCTTTTCTTTTATTATTAACGTTACCTGTATTAGCCGGAGCAATTACCATGTTGTTAACTGATAGAAATTTAAATACTTCTTTTTATGATCCATCTGGTGGAGGTGATCCTGTATTATATCAA- Phytophthora_drechsleri_CBS292.35 GTTGGTACAACATTATCTCTTTTAATCCGAATGGAATTAGCACAACCAGGTAATCAAATTTTTATGGGAAATCATCAATTATATAATGTTGTTGTTACCGCCCACGCTTTTATTATGGTTTTTTTTTTAGTTATGCCTGCATTAATTGGTGGTTTTGGTAATTGGTTTGTTCCTTTAATGATAGGTGCTCCTGATATGGCATTTCCACGTATGAATAATATAAGTTTTTGGTTATTACCACCAGCATTATTATTATTAGTTTCTTCAGCTATTGTTGAATCGGGTGCCGGTACCGGTTGGACTGTTTATCCACCATTATCAAGTGTACAAGCACACTCAGGACCATCAGTAGATTTAGCTATTTTTAGTTTACATTTAACAGGTATTTCTTCATTATTAGGTGCAATTAATTTTATTTCAACTATTTATAATATGAGAGCACCTGGTTTAAGTTTTCATAGATTACCTTTATTTGTTTGGTCTGTATTAATTACAGCTTTTCTTTTATTATTAACCTTACCTGTATTAGCTGGAGCAATTACTATGTTATTAACTGATAGAAATTTAAATACGTCTTTTTATGATCCATCAGGTGGGGGTGATCCAGTATTATATCAA- Phytophthora_erythroseptica_CBS129.23 GTTGGTACAACATTATCTCTTTTAATCCGAATGGAATTAGCACAACCAGGTAATCAAATTTTTATGGGAAATCATCAATTATATAATGTTGTTGTTACCGCCCACGCTTTTATAATGGTTTTCTTTTTAGTTATGCCTGCATTAATTGGTGGTTTTGGTAATTGGTTTGTTCCTTTAATGATAGGTGCTCCTGATATGGCGTTTCCACGTATGAATAATATAAGTTTTTGGTTATTACCACCAGCATTATTATTATTAGTTTCTTCAGCTATTGTTGAATCAGGAGCAGGTACAGGTTGGACTGTTTATCCACCATTATCTAGTGTACAAGCACACTCAGGACCATCAGTAGATTTAGCTATTTTTAGTTTACATTTAACAGGTATTTCTTCGTTATTAGGTGCAATTAACTTTATTTCAACTATTTATAACATGAGAGCTCCAGGTTTAAGTTTTCATCGATTACCTTTATTTGTTTGGTCTGTATTAATTACAGCTTTTCTTTTATTATTAACGTTACCTGTATTAGCCGGAGCAATTACCATGTTGTTAACTGATAGAAATTTAAATACTTCTTTTTATGATCCATCTGGTGGAGGTGATCCTGTATTATATCAA- Phytophthora_medicaginis_CBS117685 GTAGGTACAACATTATCCCTTTTAATCCGAATGGAATTAGCACAACCTGGTAATCAAATTTTTATGGGAAATCATCAATTATATAATGTTGTTGTTACTGCTCACGCTTTTATCATGGTTTTCTTCTTAGTTATGCCCGCATTAATTGGTGGTTTTGGTAATTGGTTTGTTCCTTTAATGATAGGTGCTCCTGATATGGCATTTCCACGTATGAATAATATAAGTTTTTGGTTATTACCCCCGGCATTATTATTATTAGTTTCTTCTGCTATTGTTGAATCTGGTGCTGGTACTGGTTGGACCGTTTATCCACCATTATCTAGTGTACAAGCACACTCAGGACCTTCAGTAGATTTAGCTATTTTTAGTTTACATTTAACAGGTATTTCTTCATTATTAGGTGCAATTAATTTTATTTCAACTATTTATAATATGAGAGCACCTGGTTTAAGTTTTCACAGATTACCCTTATTCGTTTGGTCTGTATTAATTACAGCTTTTCTTTTATTATTAACCTTACCGGTATTAGCTGGAGCAATTACTATGTTGTTAACTGATAGAAATTTAAATACTTCGTTTTATGATCCATCAGGTGGAGGTGATCCAGTATTATATCAA- Phytophthora_primulae_P10333 ATTGGTACAACATTATCTCTTTTAATTCGAATGGAATTAGCACAACCAGGTAATCAGATTTTTATGGGAAATCATCAATTATATAATGTTGTAGTTACAGCACATGCATTTATTATGGTTTTTTTTTTAGTAATGCCCGCTTTAATTGGTGGATTTGGTAATTGGTTTGTTCCTTTAATGATAGGTGCTCCTGATATGGCATTTCCACGTATGAATAATATTAGTTTTTGGTTATTACCTCCAGCATTATTACTGTTAGTTTCTTCAGCAATTGTTGAATCCGGCGCAGGTACTGGTTGGACTGTTTATCCACCATTATCAAGTGTACAAGCACATTCAGGACCTTCTGTAGATTTAGCAATTTTTAGTTTACATTTAACAGGGATTTCTTCATTATTAGGAGCAATTAATTTTATTTCAACTATTTATAATATGAGAGCTCCTGGTTTAAGTTTTCATCGTTTACCTTTATTTGTATGGTCGATCTTAATTACGGCTTTTCTTTTATTATTAACTTTACCTGTATTAGCTGGCGCTATTACGATGCTATTAACAGATAGAAATTTAAATACTTCTTTTTATGACCCATCAGGTGGAGGTGATCCTGTATTATATCAA- Phytophthora_pseudocryptogea_VH16118 GTTGGTACAACATTATCTCTTTTAATCCGAATGGAATTAGCACAACCAGGTAATCAAATTTTTATGGGAAATCATCAATTATATAATGTTGTTGTTACCGCCCACGCTTTTATCATGGTTTTCTTTTTAGTTATGCCTGCATTAATTGGTGGTTTTGGTAATTGGTTTGTTCCTTTAATGATAGGTGCTCCTGATATGGCATTTCCACGTATGAATAATATAAGTTTTTGGTTATTACCACCAGCATTATTATTATTAGTTTCTTCAGCTATTGTTGAATCAGGTGCTGGTACAGGTTGGACCGTTTATCCACCATTATCTAGTGTACAAGCACACTCAGGACCCTCAGTAGATTTAGCTATTTTTAGTTTACATTTAACAGGTATTTCTTCGTTATTAGGTGCAATTAACTTTATTTCAACTATTTATAACATGAGAGCTCCAGGTTTAAGTTTTCATCGATTACCTTTATTTGTTTGGTCTGTATTAATTACAGCTTTTCTTTTATTATTAACATTACCCGTATTAGCAGGAGCAATTACTATGTTGTTAACTGATAGAAATTTAAATACTTCTTTTTATGATCCATCTGGTGGAGGTGATCCAGTATTATATCAA- Phytophthora_ramorum_P10301 GTTGGTACAACCTTATCTCTTTTAATTAGAATGGAATTAGCACAACCAGGTAATCAAATTTTTATGGGTAATCATCAATTATATAATGTTGTTGTTACTGCACATGCTTTTATCATGGTTTTTTTTTTAGTTATGCCTGCTTTAATTGGTGGGTTTGGTAACTGGTTTGTACCTTTAATGATAGGTGCTCCAGATATGGCATTTCCTCGTATGAATAATATAAGTTTTTGGTTATTACCTCCGGCTTTATTATTATTAGTTTCATCAGCTATTGTAGAATCTGGAGCTGGTACTGGTTGGACAGTTTATCCACCTTTATCAAGTGTACAAGCACATTCAGGACCTTCTGTAGATTTAGCTATTTTTAGTTTACATTTAACAGGTATTTCTTCATTATTAGGTGCAATTAATTTTATTTCAACTATTTATAATATGCGAGCTCCTGGTTTAAGTTTCCATAGATTACCTTTATTTGTTTGGTCTGTATTAATTACAGCTTTTCTTTTATTATTAACATTACCTGTTTTAGCTGGTGCAATTACTATGTTATTAACTGATAGAAATTTAAATACTTCTTTTTATGATCCATCAGGCGGAGGTGATCCTGTGTTATATCAA- Phytophthora_samsomeana_NBRC31624 GTTGGTACAACATTATCTCTTTTAATAAGAATGGAATTAGCACAACCAGGTAATCAAATTTTTATGGGAAATCATCAATTATATAATGTTGTTGTTACAGCCCACGCTTTTATCATGGTTTTCTTTTTAGTTATGCCAGCATTAATCGGTGGTTTTGGTAATTGGTTTGTTCCTTTAATGATAGGTGCTCCTGATATGGCATTTCCACGTATGAATAATATAAGTTTTTGGTTATTACCACCAGCATTATTATTATTAGTTTCTTCAGCTATTGTTGAATCAGGTGCTGGTACTGGTTGGACTGTTTATCCACCATTATCTAGTGTACAAGCACACTCAGGACCTTCAGTAGATTTAGCTATTTTTAGTTTACATTTAACGGGTATTTCTTCATTATTAGGTGCAATTAATTTTATTTCAACTATTTATAATATGAGAGCACCTGGTTTAAGTTTTCATAGATTACCTTTATTTGTTTGGTCTGTATTAATTACAGCTTTTCTTTTATTATTAACATTACCCGTATTAGCTGGGGCAATTACTATGTTGTTAACTGATAGAAATTTAAATACTTCTTTTTATGACCCATCTGGTGGAGGTGATCCAGTATTATATCAA- Phytophthora_sansomeana_CBS957.87 GTTGGTCCAACATTATCTCTTTTAATCAGCATGGAATTAGCACAACCAGGT{AC}ATCAAATTTTTATGGGAAATCATCAATTATATAATGTTGTTGTTACAGCCCACGCTTTTATCATGGTTTTCTTTTTAGTTATGCCAGCATTAATCGGTGGTTTTGGTAATTGGTTTGTTCCTTTAATGATAGGTGCTCCTGATATGGCATTTCCACGTATGAATAATATAAGTTTTTGGTTATTACCACCAGCATTATTATTATTAGTTTCTTCAGCTATTGTTGAATCAGGTGCTGGTACTGGTTGGACTGTTTATCCACCATTATCTAGTGTACAAGCACACTCAGGACCTTCAGTAGATTTAGCTATTTTTAGTTTACATTTAACGGGTATTTCTTCATTATTAGGTGCAATTAATTTTATTTCAACTATTTATAATATGAGAGCACCTGGTTTAAGTTTTCATAGATTACCTTTATTTGTTTGGTCTGTATTAATTACAGCTTTTCTTTTATTATTAACATTACCCGTATTAGCTGGGGCAATTACTATGTTGTTAACTGATAGAAATTTAAATACTTCTTTTTATGACCCATCTGGTGGAGGTGATCCAGTATTATATCAA- Phytophthora_sp._RLKam2016_61c GTTGGTACAACATTATCTCTTTTAATCCGAATGGAATTAGCACAACCAGGTAATCAAATTTTTATGGGAAATCATCAATTATATAATGTTGTTGTGACCGCCCACGCTTTTATCATGGTTTTCTTTTTAGTTATGCCTGCATTAATTGGTGGTTTTGGTAATTGGTTTGTTCCTTTAATGATAGGTGCTCCTGATATGGCATTTCCACGTATGAATAATATAAGTTTTTGGTTATTACCACCAGCATTATTATTATTAGTTTCTTCAGCTATTGTTGAATCTGGTGCTGGTACAGGTTGGACCGTTTATCCACCATTATCTAGTGTACAAGCACACTCAGGACCTTCAGTAGATTTAGCTATTTTTAGTTTACATTTAACAGGTATTTCTTCGTTATTAGGTGCAATTAACTTTATTTCAACTATTTATAACATGAGAGCTCCAGGTTTAAGTTTTCATCGATTACCTTTATTTGTTTGGTCTGTATTAATTACAGCTTTTCTTTTATTATTAACATTACCTGTATTAGCCGGAGCAATTACTATGTTGTTAACTGATAGAAATTTAAATACTTCTTTTTATGATCCATCTGGTGGAGGTGATCCAGTATTATATCAA- Phytophthora_sp._RLKam2016_63b GTTGGTACAACATTATCTCTTTTAATCCGAATGGAATTAGCACAACCAGGTAATCAAATTTTTATGGGAAATCATCAATTATATAATGTTGTTGTTACCGCCCACGCTTTTATCATGGTTTTCTTTTTAGTTATGCCTGCATTAATTGGTGGTTTTGGTAATTGGTTTGTTCCTTTAATGATAGGTGCTCCTGATATGGCATTTCCACGTATGAATAATATAAGTTTTTGGTTATTACCACCAGCATTATTATTATTAGTTTCTTCAGCTATTGTTGAATCAGGTGCTGGTACAGGTTGGACCGTTTATCCACCATTATCTAGTGTACAAGCACACTCAGGACCCTCAGTAGATTTAGCTATTTTTAGTTTACATTTAACAGGTATTTCTTCGTTATTAGGTGCAATTAACTTTATTTCAACTATTTATAACATGAGAGCTCCAGGTTTAAGTTTTCATCGATTACCTTTATTTGTTTGGTCTGTATTAATTACAGCTTTTCTTTTATTATTAACATTACCCGTATTAGCAGGAGCAATTACTATGTTGTTAACTGATAGAAATTTAAATACTTCTTTTTATGATCCATCTGGTGGAGGTGATCCAGTATTATATCAA- Phytophthora_sp._kelmania_GF543 GTTGGTACAACATTATCTCTTTTAATCCGAATGGAATTAGCACAACCAGGTAATCAAATTTTTATGGGAAATCATCAATTATATAATGTTGTTGTGACCGCCCACGCTTTTATCATGGTTTTCTTTTTAGTTATGCCTGCATTAATTGGTGGTTTTGGTAATTGGTTTGTTCCTTTAATGATAGGTGCTCCTGATATGGCATTTCCACGTATGAATAATATAAGTTTTTGGTTATTACCACCAGCATTATTATTATTAGTTTCTTCAGCTATTGTTGAATCTGGTGCTGGTACAGGTTGGACCGTTTATCCACCATTATCTAGTGTACAAGCACACTCAGGACCTTCAGTAGATTTAGCTATTTTTAGTTTACATTTAACAGGTATTTCTTCGTTATTAGGTGCAATTAACTTTATTTCAACTATTTATAACATGAGAGCTCCAGGTTTAAGTTTTCATCGATTACCTTTATTTGTTTGGTCTGTATTAATTACAGCTTTTCTTTTATTATTAACATTACCTGTATTAGCCGGAGCAATTACTATGTTGTTAACTGATAGAAATTTAAATACTTCTTTTTATGATCCATCTGGTGGAGGTGATCCAGTATTATATCAA- Phytophthora_sp._kelmania_P10613 GTTGGTACAACATTATCTCTTTTAATCCGAATGGAATTAGCACAACCAGGTAATCAAATTTTTATGGGAAATCATCAATTATATAATGTTGTGGTGACCGCCCACGCTTTTATCATGGTTTTCTTTTTAGTTATGCCTGCATTAATTGGTGGTTTTGGTAATTGGTTTGTTCCTTTAATGATAGGTGCTCCTGATATGGCATTTCCACGTATGAATAATATAAGTTTTTGGTTATTACCACCAGCATTATTATTATTAGTTTCTTCAGCTATTGTTGAATCTGGTGCTGGTACAGGTTGGACCGTTTATCCACCATTATCTAGTGTACAAGCACACTCAGGACCTTCAGTAGATTTAGCTATTTTTAGTTTACATTTAACAGGTATTTCTTCGTTATTAGGTGCAATTAACTTTATTTCAACTATTTATAACATGAGAGCTCCAGGTTTAAGTTTTCATCGATTACCTTTATTTGTTTGGTCTGTATTAATTACAGCTTTTCTTTTATTATTAACATTACCTGTATTAGCCGGAGCAATTACTATGTTGTTAACTGATAGAAATTTAAATACTTCTTTTTATGATCCATCTGGTGGAGGTGATCCAGTATTATATCAA- ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M55858] TITLE 'Phytophthora B-tub'; LINK TAXA = Taxa1; DIMENSIONS NCHAR=822; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Phytophthora_cryptogea_CBS113.19 GTCGTCCGCAAGGAGGCCGAGAGCTGTGACTGCCTGCAGGGTTTCCAGATCACGCACTCGCTGGGTGGCGGTACCGGCTCCGGTATGGGCACGCTTCTTATCTCAAAGATCCGTGAAGAGTACCCGGACCGTATCATGTGCACGTACTCCGTGTGCCCGTCCCCCAAGGTGTCGGACACGGTCGTGGAGCCCTACAACGCCACGCTGTCGGTGCACCAGCTTGTTGAGAACGCCGATGAGGTCATGTGCCTGGATAACGAGGCCCTGTACGACATTTGCTTCCGTACGCTCAAGCTCACGACCCCCACGTACGGTGACCTGAACCACCTGGTGTGTGCCGCCATGTCCGGCATCACAACGTGCCTGCGTTTCCCCGGTCAGCTGAACTCGGACCTGCGTAAGCTGGCGGTGAACCTGATTCCGTTCCCGCGTCTTCACTTCTTCATGATTGGTTTCGCCCCGCTGACCTCGCGTGGCTCGCAGCAGTACCGTGCCCTGACGGTGCCCGAGCTGACGCAGCAGCAGTTCGACGCCAAGAACATGATGTGCGCCGCTGACCCTCGCCACGGTCGCTATTTAACTGCCGCGTGTATGTTCCGCGGACGTATGAGCACGAAGGAGGTCGACGAGCAGATGCTGAACGTGCAGAACAAGAACTCGTCGTACTTCGTCGAGTGGATCCCTAACAACATCAAGGCTAGCGTGTGTGACATCCCGCCTAAGGGTCTCAAGATGAGTACCACGTTCATCGGTAACTCGACCGCTATCCAGGAGATGTTCAAGCGTGTGTCCGAACAGTTTACGGCAATGTTCCGTCGTAAG Phytophthora_cryptogea_CBS290.35 GTCGTCCGCAAGGAGGCCGAGAGCTGTGACTGCCTGCAGGGTTTCCAGATCACGCACTCGCTGGGTGGCGGTACCGGCTCCGGTATGGGCACGCTTCTTATCTCAAAGATCCGTGAAGAGTACCCGGACCGTATCATGTGCACGTACTCCGTGTGCCCGTCCCCCAAGGTGTCGGACACGGTCGTGGAGCCCTACAACGCCACGCTGTCGGTGCACCAGCTTGTTGAGAACGCCGATGAGGTCATGTGCCTGGATAACGAGGCCCTGTACGACATTTGTTTCCGTACGCTCAAGCTCACGACCCCCACGTACGGTGACCTGAACCACCTGGTGTGTGCCGCCATGTCCGGCATCACAACGTGCCTGCGTTTCCCCGGTCAGCTGAACTCGGACCTGCGTAAGCTGGCGGTGAACCTGATTCCGTTCCCGCGTCTTCACTTCTTCATGATTGGTTTCGCCCCGCTGACCTCGCGTGGCTCGCAGCAGTACCGTGCCCTGACGGTGCCCGAGCTGACGCAGCAGCAGTTCGACGCCAAGAACATGATGTGCGCCGCTGACCCTCGCCACGGTCGCTATTTAACTGCCGCGTGTATGTTCCGCGGACGTATGAGCACGAAGGAGGTCGACGAGCAGATGCTGAACGTGCAGAACAAGAACTCGTCGTACTTCGTCGAGTGGATCCCTAACAACATCAAGGCTAGCGTGTGTGACATCCCGCC{CT}AAGGGTCTCAAGATGAGTACCACGTTCATCGGTAACTCGACCGCTATCCAGGAGATGTTCAAGCGTGTGTCCGAACAGTTTACGGCAATGTTCCGTCGTAAG Phytophthora_drechsleri_CBS292.35 GTTGTCCGCAAGGAGGCCGAGAGCTGTGACTGCCTGCAGGGTTTCCAGATCACGCACTCGCTCGGTGGCGGTACCGGCTCCGGTATGGGCACGCTTCTTATCTCCAAGATCCGTGAAGAGTACCCGGACCGTATCATGTGCACGTACTCCGTGTGCCCGTCCCCCAAGGTGTCGGACACAGTCGTGGAGCCCTACAACGCCACGCTGTCGGTGCACCAGCTTGTCGAGAACGCCGATGAGGTCATGTGCCTGGACAACGAGGCCCTGTACGACATTTGCTTCCGCACGCTCAAGCTCACGACCCCCACGTACGGTGACCTGAACCACTTGGTGTGTGCCGCCATGTCCGGCATCACCACGTGCCTGCGATTCCCCGGTCAGCTGAACTCGGACCTGCGTAAGCTGGCGGTGAACCTGATCCCGTTCCCGCGTCTTCACTTCTTCATGATTGGTTTCGCCCCGCTGACCTCGCGTGGCTCGCAGCAGTACCGTGCCCTGACGGTGCCCGAGCTGACGCAGCAGCAGTTCGACGCCAAGAACATGATGTGCGCCGCTGACCCTCGCCACGGTCGCTATTTAACTGCCGCGTGTATGTTCCGCGGACGTATGAGCACGAAGGAGGTCGATGAGCAGATGCTGAACGTGCAGAACAAGAACTCGTCGTACTTCGTCGAGTGGATCCCTAACAACATCAAGGCTAGCGTGTGTGACATCCCGCCCAAGGGTCTCAAGATGAGCACCACGTTCATCGGTAACTCGACCGCTATCCAGGAGATGTTCAAGCGTGTGTCCGAACAGTTTACGGCAATGTTCCGTCGTAAG Phytophthora_erythroseptica_CBS129.23 GTCGTCCGCAAGGAGGCCGAGAGCTGTGACTGCCTGCAGGGTTTCCAGATCACGCACTCGCTGGGTGGCGGTACCGGCTCCGGTATGGGCACGCTTCTTATCTCAAAGATCCGTGAAGAGTACCCGGACCGTATCATGTGCACGTACTCCGTGTGCCCGTCCCCCAAGGTGTCGGACACGGTCGTGGAGCCCTACAACGCCACGCTGTCGGTGCACCAGCTTGTTGAGAACGCCGATGAGGTCATGTGCCTGGATAACGAGGCCCTGTACGACATTTGCTTCCGTACGCTCAAGCTCACGACCCCCACGTACGGTGACCTGAACCACCTGGTGTGTGCCGCCATGTCCGGCATCACAACGTGCCTGCGTTTCCCCGGTCAGCTGAACTCGGACCTGCGTAAGCTGGCGGTGAACCTGATTCCGTTCCCGCGTCTTCACTTCTTCATGATTGGTTTCGCCCCGCTGACCTCGCGTGGCTCGCAGCAGTACCGTGCCCTGACGGTGCCCGAGCTGACGCAGCAGCAGTTCGACGCCAAGAACATGATGTGCGCCGCTGACCCTCGCCACGGTCGCTATTTAACTGCCGCGTGTATGTTCCGCGGACGTATGAGCACGAAGGGGGTCGACGAGCAGATGCTGAACGTGCAGAACAAGAACTCGTCGTACTTCGTCGAGTGGATCCCTAACAACATCAAGGCTAGCGTGTGTGACATCCCGCCCAAGGGTCTCAAGATGAGTACCACTTTCATCGGTAACTCGACCGCTATCCAGGAGATGTTCAAGCGTGTGTCCGAACAGTTTACGGCAATGTTCCGTCGTAAG Phytophthora_medicaginis_CBS117685 GTCGTCCGCAAGGAGGCTGAGAGCTGTGACTGCCTGCAGGGTTTCCAGATCACACACTCGCTCGGTGGCGGTACCGGCTCCGGTATGGGCACGCTTCTTATCTCCAAGATCCGTGAAGAGTACCCGGACCGTATCATGTGCACGTACTCCGTGTGCCCGTCCCCCAAGGTGTCGGACACGGTTGTGGAGCCCTACAACGCCACGCTGTCCGTGCACCAGCTCGTCGAGAACGCCGATGAGGTCATGTGCCTGGATAACGAGGCCCTGTACGACATTTGCTTCCGCACGCTCAAGCTCACGACCCCTACGTACGGTGACCTGAACCACTTGGTGTGTGCCGCCATGTCCGGTATCACGACGTGCCTGCGTTTCCCGGGTCAGCTGAACTCGGACCTGCGTAAGCTGGCGGTGAACCTGATTCCGTTCCCGCGTCTTCACTTCTTCATGATTGGTTTCGCCCCGCTGACCTCGCGTGGCTCGCAGCAGTACCGGGCCCTGACGGTGCCCGAGCTGACGCAGCAGCAGTTCGATGCCAAGAACATGATGTGCGCCGCTGACCCTCGCCATGGTCGCTATTTAACTGCCGCGTGTATGTTCCGCGGACGCATGAGCACGAAGGAGGTCGATGAGCAGATGCTGAACGTGCAGAACAAGAACTCGTCGTACTTCGTCGAGTGGATTCCTAACAACATCAAGGCTAGCGTGTGTGACATCCCGCCCAAGGGTCTCAAGATGAGCACCACGTTCATCGGTAACTCGACCGCTATCCAGGAGATGTTCAAGCGTGTGTCCGAACAGTTTACGGCAATGTTCCGTCGTAAG Phytophthora_primulae_P10333 GTCGTCCGCAAGGAGGCGGAGAGCTGTGATTGCCTGCAGGGATTCCAGATCACCCACTCGCTTGGTGGAGGTACTGGTTCCGGTATGGGAACGCTTTTGATTTCCAAGATTCGTGAAGAGTACCCAGACCGTATCATGTGCACATACTCTGTGTGTCCGTCGCCCAAAGTGTCAGACACAGTTGTGGAGCCCTACAACGCCACCCTCTCTGTACACCAGCTTGTCGAAAACGCTGATGAAGTCATGTGCCTGGATAACGAGGCCTTGTACGACATTTGCTTCCGTACGCTTAAGCTCACCACCCCTACGTACGGTGACCTGAACCACTTGGTGTGTGCTGCCATGTCCGGCATCACCACGTGTCTGCGTTTCCCTGGTCAGTTGAACTCGGACTTGCGAAAGCTGGCTGTGAACCTGATTCCGTTCCCGCGTCTTCACTTCTTCATGATTGGTTTCGCCCCGCTGACCTCGCGTGGCTCGCAGCAGTACCGTGCCCTGACGGTGCCTGAACTGACCCAACAGCAGTTCGACGCTAAGAACATGATGTGTGCCGCTGACCCTCGCCACGGCCGTTATTTAACTGCCGCGTGTATGTTCCGCGGGCGTATGAGTACGAAGGAAGTTGATGAGCAGATGCTGAACGTGCAGAACAAGAACTCTTCGTACTTCGTCGAGTGGATCCCTAACAACATCAAGGCAAGTGTGTGTGACATCCCGCCTAAGGGACTGAAGATGAGCACCACATTCATTGGTAACTCCACCGCTATCCAAGAGATGTTCAAGCGTGTGTCTGAGCAGTTCACGGCAATGTTCCGTCGTAAG Phytophthora_pseudocryptogea_VHS16118 GTCGTCCGCAAGGAGGCCGAGAGCTGTGACTGCCTGCAGGGTTTCCAGATCACGCACTCGCTGGGTGGCGGTACCGGCTCCGGTATGGGCACGCTTCTTATCTCCAAGATCCGTGAAGAGTACCCGGACCGTATCATGTGCACGTACTCCGTGTGCCCGTCCCCCAAGGTGTCGGACACGGTCGTGGAGCCCTACAACGCTACGCTGTCGGTGCACCAGCTTGTTGAGAACGCCGATGAGGTCATGTGCCTGGATAACGAGGCCCTGTACGACATTTGCTTCCGTACGCTCAAGCTCACGACCCCCACGTACGGTGACCTGAACCACCTGGTGTGTGCCGCCATGTCCGGCATCACCACGTGCCTGCGTTTCCCGGGTCAGCT{AG}AACTCGGACCTGCGTAAGCTGGCGGTGAACCTGATCCCGTTCCCGCGTCTTCACTTCTTCATGATTGGTTTCGCCCCGCTGACCTCGCGTGGCTCGCAGCAGTACCGTGCCTTGACGGTGCCCGAGCTGACGCAGCAGCAGTTCGACGCCAAGAACATGATGTGCGCCGCTGACCCTCGCCACGGTCGCTATTTAACTGCCGCGTGTATGTTCCGCGGACGTATGAGCACGAAGGAGGTCGATGAGCAGATGCTGAACGTGCAGAACAAGAACTCGTCGTACTTCGTCGAGTGGATCCCTAACAACATCAAGGCTAGCGTGTGTGACATCCCGCCCAAGGGTCTCAAGATGAGCACCACGTTCATCGGTAACTCGACCGCTATCCAGGAGATGTTCAAGCGTGTGTCCGAACAGTTTACGGCAATGTTCCGTCGTAAG Phytophthora_ramorum_P10301 GTCGTCCGCAAGGAGGCCGAGAGCTGTGACTGCCTGCAGGGGTTCCAGATCACGCACTCGCTTGGTGGCGGTACCGGTTCTGGTATGGGCACGCTTCTGATCTCCAAGATCCGTGAGGAGTACCCGGACCGTATCATGTGCACGTACTCGGTGTGCCCGTCGCCCAAGGTGTCGGACACGGTCGTGGAGCCCTACAACGCCACGCTGTCGGTGCACCAGCTTGTCGAGAACGCCGACGAGGTCATGTGCCTGGATAACGAGGCGCTGTACGACATTTGCTTCCGCACGCTCAAGCTCACCACCCCCACCTACGGTGACCTGAACCACCTGGTGTGCGCCGCTATGTCCGGCATCACCACGTGCCTGCGTTTCCCGGGTCAGCTGAACTCGGACCTGCGGAAGCTGGCGGTGAACTTGATTCCGTTCCCGCGTCTTCACTTCTTCATGATTGGTTTCGCCCCGCTGACCTCGCGTGGCTCGCAGCAGTACCGTGCCCTGACGGTGCCCGAGCTGACCCAGCAGCAGTTCGACGCAAAGAACATGATGTGCGCCGCCGACCCTCGTCACGGCCGCTATTTAACTGCCGCGTGTATGTTCCGCGGACGTATGAGCACGAAGGAGGTTGA{CT}GAGCAGATGCTGAACGTGCAGAACAAGAACTCGTCGTACTTCGTCGAGTGGATCCCTAACAACATCAAGGCTAGCGTGTGTGACATCCCGCCCAAGGGCCTGAAGATGAGCACTACGTTCATCGGTAACTCGACCGCTATCCAGGAGATGTTCAAGCGTGTGTCTGAGCAGTTTACGGCTATGTTCCGTCGTAAG Phytophthora_samsomeana_NBRC31624 GTTGTCCGCAAGGAGGCCGAGAGCTGTGACTGCCTGCAGGGTTTCCAGATCACGCACTCGCTGGGTGGCGGTACCGGCTCCGGTATGGGCACGCTTCTTATCTCCAAGATCCGTGAAGAGTACCCGGACCGTATCATGTGCACGTACTCCGTGTGCCCGTCCCCGAAGGTGTCGGACACGGTCGTGGAGCCCTACAACGCCACGCTGTCGGTGCACCAGCTTGTCGAGAACGCCGATGAGGTCATGTGCCTCGATAACGAGGCCCTGTACGACATTTGCTTCCGCACGCTCAAGCTCACGACCCCCACGTACGGTGACCTGAACCACTTGGTGTGTGCCGCCATGTCCGGCATCACCACGTGCCTGCGTTTCCCGGGTCAGCTGAACTCGGACCTGCGTAAGCTGGCGGTGAACCTGATTCCGTTCCCGCGTCTTCACTTCTTCATGATTGGTTTCGCCCCGCTGACCTCGCGTGGCTCGCAGCAGTACCGTGCCCTGACGGTGCCCGAGCTGACGCAGCAGCAGTTCGACGCCAAGAACATGATGTGCGCCGCTGACCCTCGCCACGGTCGCTATTTAACTGCCGCGTGTATGTTCCGTGGACGTATGAGCACGAAGGAGGTCGATGAGCAGATGCTGAACGTGCAGAACAAGAACTCGTCGTACTTCGTCGAGTGGATCCCTAACAACATCAAGGCTAGCGTGTGTGACATCCCGCCCAAGGGTCTCAAGATGAGCACCACGTTCATCGGTAACTCGACCGCTATCCAGGAGATGTTCAAGCGTGTGTCTGAACAGTTTACGGCAATGTTCCGTCGTAAG Phytophthora_sansomeana_CBS957.87 GTTGTCCGCAAGGAGGCCGAGAGCTGTGACTGCCTGCAGGGTTTCCAGATCACGCACTCGCTGGGTGGCGGTACCGGCTCCGGTATGGGCACGCTTCTTATCTCCAAGATCCGTGAAGAGTACCCGGACCGTATCATGTGCACGTACTCCGTGTGCCCGTCCCCGAAGGTGTCGGACACGGTCGTGGAGCCCTACAACGCCACGCTGTCGGTGCACCAGCTTGTCGAGAACGCCGATGAGGTCATGTGCCTCGATAACGAGGCCCTGTACGACATTTGCTTCCGCACGCTCAAGCTCACGACCCCCACGTACGGTGACCTGAACCACTTGGTGTGTGCCGCCATGTCCGGCATCACCACGTGCCTGCGTTTCCCGGGTCAGCTGAACTCGGACCTGCGTAAGCTGGCGGTGAACCTGATTCCGTTCCCGCGTCTTCACTTCTTCATGATTGGTTTCGCCCCGCTGACCTCGCGTGGCTCGCAGCAGTACCGTGCCCTGACGGTGCCCGAGCTGACGCAGCAGCAGTTCGACGCCAAGAACATGATGTGCGCCGCTGACCCTCGCCACGGTCGCTATTTAACTGCCGCGTGTATGTTCCGTGGACGTATGAGCACGAAGGAGGTCGATGAGCAGATGCTGAACGTGCAGAACAAGAACTCGTCGTACTTCGTCGAGTGGATCCCTAACAACATCAAGGCTAGCGTGTGTGACATCCCGCCCAAGGGTCTCAAGATGAGCACCACGTTCATCGGTAACTCGACCGCTATCCAGGAGATGTTCAAGCGTGTGTCTGAACAGTTTACGGCAATGTTCCGTCGTAAG Phytophthora_sp._RLKam2016_61c_Tub_allele_1 GTCGTCCGCAAGGAGGCCGAGAGCTGTGATTGCCTGCAGGGTTTCCAGATCACGCACTCGCTGGGTGGCGGTACCGGCTCCGGTATGGGCACGCTTCTTATCTCCAAGATCCGTGAAGAGTACCCGGACCGTATCATGTGCACGTACTCCGTGTGCCCGTCCCCCAAGGTGTCGGACACGGTCGTGGAGCCCTACAACGCTACGCTGTCGGTGCACCAGCTTGTTGAGAACGCCGATGAGGTCATGTGCCTGGATAACGAGGCTCTGTACGACATTTGCTTCCGTACGCTCAAGCTCACGACCCCCACGTACGGTGACCTGAACCACCTGGTGTGTGCCGCCATGTCCGGCATCACCACGTGCCTGCGTTTCCCGGGTCAGCTGAACTCGGACCTGCGTAAGCTGGCGGTGAACCTGATCCCGTTCCCGCGTCTTCACTTCTTCATGATTGGTTTCGCCCCGCTGACCTCGCGTGGCTCGCAGCAGTACCGTGCCCTGACGGTGCCCGAGCTGACGCAGCAGCAGTTCGACGCCAAGAACATGATGTGCGCCGCTGACCCTCGCCACGGTCGCTATTTAACTGCCGCGTGTATGTTTCGCGGACGTATGAGCACGAAGGAGGTCGATGAGCAGATGCTGAACGTGCAGAACAAGAACTCGTCGTACTTCGTCGAGTGGATCCCTAACAACATCAAGGCTAGCGTGTGTGACATCCCGCCCAAGGGTCTCAAGATGAGCACCACGTTCATCGGTAACTCGACCGCTATCCAGGAGATGTTCAAGCGTGTGTCCGAACAGTTTACGGCAATGTTCCGTCGTAAG Phytophthora_sp._RLKam2016_61c_Tub_allele_2 GTCGTCCGCAAGGAGGCCGAGAGCTGTGATTGCCTGCAGGGTTTCCAGATCACGCACTCGCTGGGTGGCGGTACCGGCTCCGGTATGGGCACGCTTCTTATCTCCAAGATCCGTGAAGAGTACCCGGACCGTATCATGTGCACGTACTCCGTGTGCCCGTCCCCCAAGGTGTCGGACACGGTCGTGGAGCCCTACAACGCTACGCTGTCGGTGCACCAGCTTGTTGAGAACGCCGATGAGGTCATGTGCCTGGATAACGAGGCTCTGTACGACATTTGCTTCCGTACGCTCAAGCTCACGACCCCCACGTACGGTGACCTGAACCACCTGGTGTGTGCCGCCATGTCCGGCATCACCACGTGCCTGCGTTTCCCGGGTCAGCTGAACTCGGACCTGCGTAAGCTGGCGGTGAACCTGATCCCGTTCCCGCGTCTTCACTTCTTCATGATTGGTTTCGCCCCGCTGACCTCGCGTGGCTCGCAGCAGTACCGTGCCCTGACGGTGCCCGAGCTGACGCAGCAGCAGTTCGACGCCAAGAACATGATGTGCGCCGCTGACCCTCGCCACGGTCGCTATTTAACTGCCGCGTGTATGTTTCGCGGACGTATGAGCACGAAGGAGGTCGATGAGCAGATGCTGAACGTGCAGAACAAGAACTCGTCGTACTTCGTCGAGTGGATCCCTAACAACATCAAGGCTAGTGTGTGTGACATCCCGCCCAAGGGGCTCAAGATGAGCACCACGTTCATCGGTAACTCGACCGCTATCCAGGAGATGTTCAAGCGTGTGTCCGAACAGTTTACGGCAATGTTCCGTCGTAAG Phytophthora_sp._RLKam2016_61c_Tub_allele_3 GTCGTCCGCAAGGAGGCCGAGAGCTGTGATTGCCTGCAGGGTTTCCAGATCACGCACTCGCTGGGTGGCGGTACCGGCTCCGGTATGGGCACGCTTCTTATCTCCAAGATCCGTGAAGAGTACCCGGACCGTATCATGTGCACGTACTCAGTGTGCCCGTCCCCCAAGGTGTCGGACACGGTCGTGGAGCCCTACAACGCCACGCTGTCGGTGCACCAGCTTGTTGAGAACGCCGATGAGGTCATGTGCCTGGATAACGAGGCCCTGTACGACATTTGCTTCCGTACGCTCAAGCTCACGACCCCCACGTACGGTGACCTGAACCACCTGGTGTGTGCCGCTATGTCCGGCATCACCACGTGCCTGCGTTTCCCGGGTCAGCTGAACTCGGACCTGCGTAAGCTGGCGGTGAACCTGATCCCGTTCCCGCGTCTTCACTTCTTCATGATTGGTTTCGCCCCGCTGACCTCGCGTGGCTCGCAGCAGTACCGTGCCCTGACGGTGCCCGAGCTGACGCAGCAGCAGTTCGACGCCAAGAACATGATGTGCGCCGCTGACCCTCGCCACGGTCGCTATTTAACTGCCGCGTGTATGTTCCGCGGACGTATGAGCACGAAGGAGGTCGATGAGCAGATGCTGAACGTGCAGAACAAGAACTCGTCGTACTTCGTCGAGTGGATCCCTAACAACATCAAGGCTAGTGTGTGTGACATCCCGCCCAAGGGGCTCAAGATGAGCACCACGTTCATCGGTAACTCGACCGCTATCCAGGAGATGTTCAAGCGTGTGTCCGAACAGTTTACGGCAATGTTCCGTCGTAAG Phytophthora_sp._RLKam2016_61c_Tub_allele_4 GTTGTCCGCAAGGAGGCCGAGAGCTGTGACTGCCTGCAGGGTTTCCAGATCACGCACTCGCTGGGTGGCGGTACCGGCTCCGGTATGGGCACGCTTCTTATCTCCAAGATCCGTGAAGAGTACCCGGACCGTATCATGTGCACGTACTCCGTGTGCCCGTCCCCGAAGGTGTCGGACACGGTCGTGGAGCCCTACAACGCCACGCTGTCGGTGCACCAGCTTGTCGAGAACGCCGATGAGGTCATGTGCCTCGATAACGAGGCCCTGTACGACATTTGCTTCCGCACGCTCAAGCTCACGACCCCCACGTACGGTGACCTGAACCACTTGGTGTGTGCCGCCATGTCCGGCATCACCACGTGCCTGCGTTTCCCGGGTCAGCTGAACTCGGACCTGCGTAAGCTGGCGGTGAACCTGATTCCGTTCCCGCGTCTTCACTTCTTCATGATTGGTTTCGCCCCGCTGACCTCGCGTGGCTCGCAGCAGTACCGTGCCCTGACGGTGCCCGAGCTGACGCAGCAGCAGTTCGACGCCAAGAACATGATGTGCGCCGCTGACCCTCGCCACGGTCGCTATTTAACTGCCGCGTGTATGTTCCGTGGACGTATGAGCACGAAGGAGGTCGATGAGCAGATGCTGAACGTGCAGAACAAGAACTCGTCGTACTTCGTCGAGTGGATCCCTAACAACATCAAGGCTAGCGTGTGTGACATCCCGCCCAAGGGTCTCAAGATGAGCACCACGTTCATCGGTAACTCGACCGCTATCCAGGAGATGTTCAAGCGTGTGTCTGAACAGTTTACGGCAATGTTCCGTCGTAAG Phytophthora_sp._RLKam2016_63b GTCGTCCGCAAGGAGGCCGAGAGCTGTGACTGCCTGCAGGGTTTCCAGATCACGCACTCGCTGGGTGGCGGTACCGGCTCCGGTATGGGCACGCTTCTTATCTCCAAGATCCGTGAAGAGTACCCGGACCGTATCATGTGCACGTACTCCGTGTGCCCGTCCCCCAAGGTGTCGGACACGGTCGTGGAGCCCTACAACGCTACGCTGTCGGTGCACCAGCTTGTTGAGAACGCCGATGAGGTCATGTGCCTGGATAACGAGGCCCTGTACGACATTTGCTTCCGTACGCTCAAGCTCACGACCCCCACGTACGGTGACCTGAACCACCTGGTGTGTGCCGCCATGTCCGGCATCACCACGTGCCTGCGTTTCCCGGGTCAGCTGAACTCGGACCTGCGTAAGCTGGCGGTGAACCTGATCCCGTTCCCGCGTCTTCACTTCTTCATGATTGGTTTCGCCCCGCTGACCTCGCGTGGCTCGCAGCAGTACCGTGCCTTGACGGTGCCCGAGCTGACGCAGCAGCAGTTCGACGCCAAGAACATGATGTGCGCCGCTGACCCTCGCCACGGTCGCTATTTAACTGCCGCGTGTATGTTCCGCGGACGTATGAGCACGAAGGAGGTCGATGAGCAGATGCTGAACGTGCAGAACAAGAACTCGTCGTACTTCGTCGAGTGGATCCCTAACAACATCAAGGCTAGCGTGTGTGACATCCCGCCCAAGGGTCTCAAGATGAGCACCACGTTCATCGGTAACTCGACCGCTATCCAGGAGATGTTCAAGCGTGTGTCCGAACAGTTTACGGCAATGTTCCGTCGTAAG Phytophthora_sp._kelmania_10613 GTCGTCCGCAAGGAGGCCGAGAGCTGTGACTGCCTGCAGGGTTTCCAGATCACGCACTCGCTGGGTGGCGGTACCGGCTCCGGTATGGGCACGCTTCTTATCTCCAAGATCCGTGAAGAGTACCCGGACCGTATCATGTGCACGTACTCCGTGTGCCCGTCTCCCAAGGTGTCGGACACGGTCGTGGAGCCCTACAACGCCACGCTGTCGGTGCACCAGCTTGTTGAGAACGCCGATGAGGTCATGTGCCTGGATAACGAGGCCCTGTACGACATTTGCTTCCGTACGCTCAAGCTCACGACCCCCACGTACGGTGACCTGAACCACCTGGTGTGTGCCGCCATGTCCGGCATCACCACGTGCCTGCGTTTCCCGGGTCAGCTGAACTCGGACCTGCGTAAGCTGGCGGTGAACCTGATCCCGTTCCCGCGTCTTCACTTCTTCATGATTGGTTTCGCCCCGCTGACCTCGCGTGGCTCGCAGCAGTACCGTGCCCTGACGGTGCCCGAGCTGACGCAGCAGCAGTTCGACGCCAAGAACATGATGTGCGCCGCTGACCCTCGCCACGGTCGCTATTTAACTGCCGCGTGTATGTTCCGCGGACGTATGAGCACGAAGGAGGTCGATGAGCAGATGCTGAACGTGCAGAACAAGAACTCGTCGTACTTCGTCGAGTGGATCCCTAACAACATCAAGGCTAGCGTGTGTGACATCCCGCCCAAGGGTCTCAAGATGAGCACCACGTTCATCGGTAACTCGACCGCTATCCAGGAGATGTTCAAGCGTGTGTCCGAACAGTTTACGGCAATGTTCCGTCGTAAG Phytophthora_sp._kelmania_GF543 GTCGTCCGCAAGGAGGCCGAGAGCTGTGATTGCCTGCAGGGTTTCCAGATCACGCACTCGCTGGGTGGCGGTACCGGCTCCGGTATGGGCACGCTTCTTATCTCCAAGATCCGTGAAGAGTACCCGGACCGTATCATGTGCACGTACTCAGTGTGCCCGTCCCCCAAGGTGTCGGACACGGTCGTGGAGCCCTACAACGCCACGCTGTCGGTGCACCAGCTTGTTGAGAACGCCGATGAGGTCATGTGCCTGGATAACGAGGCCCTGTACGACATTTGCTTCCGTACGCTCAAGCTCACGACCCCCACGTACGGTGACCTGAACCACCTGGTGTGTGCCGCTATGTCCGGCATCACCACGTGCCTGCGTTTCCCGGGTCAGCTGAACTCGGACCTGCGTAAGCTGGCGGTGAACCTGATCCCGTTCCCGCGTCTTCACTTCTTCATGATTGGTTTCGCCCCGCTGACCTCGCGTGGCTCGCAGCAGTACCGTGCCCTGACGGTGCCCGAGCTGACGCAGCAGCAGTTCGACGCCAAGAACATGATGTGCGCCGCTGACCCTCGCCACGGTCGCTATTTAACTGCCGCGTGTATGTTCCGCGGACGTATGAGCACGAAGGAGGTCGATGAGCAGATGCTGAACGTGCAGAACAAGAACTCGTCGTACTTCGTCGAGTGGATCCCTAACAACATCAAGGCTAGTGTGTGTGACATCCCGCCCAAGGGGCTCAAGATGAGCACCACGTTCATCGGTAACTCGACCGCTATCCAGGAGATGTTCAAGCGTGTGTCCGAACAGTTTACGGCAATGTTCCGTCGTAAG ; END; BEGIN TREES; TITLE Phytophthora_COXI; LINK TAXA = Taxa2; TRANSLATE 1 Phytophthora_sp._kelmania_GF543, 2 Phytophthora_sp._RLKam2016_63b, 3 Phytophthora_sp._RLKam2016_61c, 4 Phytophthora_sp._kelmania_P10613, 5 Phytophthora_pseudocryptogea_VH16118, 6 Phytophthora_cryptogea_CBS113.19, 7 Phytophthora_cryptogea_CBS290.35, 8 Phytophthora_erythroseptica_CBS129.23, 9 Phytophthora_samsomeana_NBRC31624, 10 Phytophthora_sansomeana_CBS957.87, 11 Phytophthora_medicaginis_CBS117685, 12 Phytophthora_drechsleri_CBS292.35, 13 Phytophthora_ramorum_P10301, 14 Phytophthora_primulae_P10333; TREE con_50_majrule = [&R] (14:0.03559208,(13:0.05135467,(12:0.01281016,(11:0.02803329,((9:0.002536346,10:0.003914072):0.01456986,((2:0.001018809,5:0.00102979):0.004147798,(1:9.820391E-4,3:9.23426E-4,4:0.002433909):0.004315716,(6:9.750337E-4,7:9.506171E-4,8:0.001115134):0.01464051):0.01473297):0.00435752):0.008018598):0.01794459):0.03559208); END; BEGIN TREES; TITLE Phytophthora_ITS; LINK TAXA = Taxa3; TRANSLATE 1 Phytophthora_sansomeana_CBS957.87, 2 Phytophthora_sansomeana_NBRC31624, 3 Phytophthora_sp._kelmania_GF543, 4 Phytophthora_sp._kelmania_P10613, 5 Phytophthora_cryptogea_CBS113.19, 6 Phytophthora_cryptogea_CBS290.35, 7 Phytophthora_erythroseptica_CBS129.23, 8 Phytophthora_sp._RLKam2016_63b, 9 Phytophthora_pseudocryptogea_VH16118, 10 Phytophthora_medicaginis_CBS117685, 11 Phytophthora_drechsleri_CBS292.35, 12 Phytophthora_ramorum_P10301, 13 Phytophthora_primulae_P10333, 14 Phytophthora_sp._RLKam_61c_allele_1, 15 Phytophthora_sp._RLKam_61c_allele_2, 16 Phytophthora_sp._RLKam_61c_allele_6, 17 Phytophthora_sp._RLKam_61c_allele_7, 18 Phytophthora_sp._RLKam_61c_allele_3, 19 Phytophthora_sp._RLKam_61c_allele_4, 20 Phytophthora_sp._RLKam_61c_allele_5, 21 Phytophthora_sp._RLKam_61c_allele_8, 22 Phytophthora_sp._RLKam_61c_allele_9, 23 Phytophthora_sp._RLKam_61c_allele_10; TREE con_50_majrule = [&R] (13:0.044647635,(12:0.05958492,(10:0.007848194,((21:0.002796126,(1:8.214574E-4,2:8.566029E-4,14:8.875443E-4,15:0.002015913,18:0.001997485,19:0.002068191,20:0.002090235,(16:8.76364E-4,17:0.002059191):0.002030338):0.004825144):0.00474534,(11:0.01777743,((5:8.300511E-4,6:8.04975E-4,7:8.361847E-4):0.005052571,((8:9.951861E-4,9:8.295639E-4):0.002237331,(22:0.001941252,(3:8.347641E-4,(4:8.666968E-4,23:0.006739073):0.002004274):0.002064449):0.001761421):0.002174881):0.005048451):0.004495766):0.006455197):0.02335345):0.044647635); END; BEGIN TREES; TITLE 'Phytophthora B-tub'; LINK TAXA = Taxa1; TRANSLATE 1 Phytophthora_sp._RLKam2016_61c_Tub_allele_1, 2 Phytophthora_sp._RLKam2016_61c_Tub_allele_2, 3 Phytophthora_sp._RLKam2016_61c_Tub_allele_3, 4 Phytophthora_sp._RLKam2016_61c_Tub_allele_4, 5 Phytophthora_samsomeana_NBRC31624, 6 Phytophthora_sansomeana_CBS957.87, 7 Phytophthora_sp._kelmania_GF543, 8 Phytophthora_pseudocryptogea_VHS16118, 9 Phytophthora_sp._RLKam2016_63b, 10 Phytophthora_sp._kelmania_10613, 11 Phytophthora_cryptogea_CBS290.35, 12 Phytophthora_cryptogea_CBS113.19, 13 Phytophthora_erythroseptica_CBS129.23, 14 Phytophthora_drechsleri_CBS292.35, 15 Phytophthora_medicaginis_CBS117685, 16 Phytophthora_ramorum_P10301, 17 Phytophthora_primulae_P10333; TREE con_50_majrule = [&R] (17:0.03793928,(16:0.01958364,(14:0.006788837,15:0.01527003,(4:7.245807E-4,5:7.762928E-4,6:6.749141E-4):0.005773037,((11:0.001723743,12:0.001439485,13:0.002853129):0.006608938,(10:0.001727768,((8:7.304389E-4,9:7.195034E-4):0.001909569,(1:9.123018E-4,(2:0.001516406,(3:6.876077E-4,7:6.880727E-4):0.00570537):0.00309071):0.003485313):0.001690752):0.001667523):0.004325515):0.01726456):0.03793928); END;