#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on March 29, 2024; 9:40 GMT TreeBASE (cc) 1994-2008 Study reference: Puliga F., Illice M., Iotti M., Baldo D., & Zambonelli A. 2020. Tuber iranicum sp. nov., a truffle species belonging to the Excavatum clade. Mycologia, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S26449] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=21; TAXLABELS Tuber_badium_KY013652 Tuber_depressum_KY013653 Tuber_depressum_KY013654 Tuber_depressum_KY013655 Tuber_excavatum_DQ191677 Tuber_excavatum_FJ809824 Tuber_excavatum_FJ809825 Tuber_excavatum_GU979140 Tuber_excavatum_JQ925689 Tuber_excavatum_JQ925690 Tuber_fulgens_JQ925691 Tuber_iranicum_4939_MN856154 Tuber_iranicum_4965_MN856155 Tuber_neoexcavatum_KY013641 Tuber_neoexcavatum_KY013642 Tuber_neoexcavatum_KY013644 Tuber_neoexcavatum_KY013645 Tuber_neoexcavatum_KY013647 Tuber_pseudoexcavatum_MG871325 Tuber_verrucosivolvum_KY013650 Tuber_verrucosivolvum_KY013651 ; END; BEGIN TAXA; TITLE Taxa2; DIMENSIONS NTAX=38; TAXLABELS Tuber_badium_KX904889 Tuber_depressum_KX904890 Tuber_depressum_KX904891 Tuber_depressum_KX904892 Tuber_excavatum_FJ748899 Tuber_excavatum_FM205555 Tuber_excavatum_FM205556 Tuber_excavatum_FM205561 Tuber_excavatum_FM205662 Tuber_excavatum_FN433140 Tuber_excavatum_FN433141 Tuber_excavatum_FN433142 Tuber_excavatum_HM152012 Tuber_excavatum_HM152013 Tuber_excavatum_HM152018 Tuber_excavatum_HM485355 Tuber_excavatum_KC330227 Tuber_excavatum_KJ524533 Tuber_excavatum_Var_intermedium_HM151977 Tuber_excavatum_Var_longisporum_HM152005 Tuber_fulgens_FM205568 Tuber_fulgens_HM152021 Tuber_fulgens_HM152024 Tuber_fulgens_HM485358 Tuber_fulgens_JQ288917 Tuber_iranicum_4939_MN854634 Tuber_iranicum_4965_MN854635 Tuber_neoexcavatum_KY013625 Tuber_neoexcavatum_KY013626 Tuber_neoexcavatum_KY013632 Tuber_neoexcavatum_KY013633 Tuber_neoexcavatum_KY013634 Tuber_neoexcavatum_KY013637 Tuber_pseudoexcavatum_MG871289 Tuber_sinoexcavatum_JX458717 Tuber_sinoexcavatum_JX458718 Tuber_verrucosivolvum_KX904887 Tuber_verrucosivolvum_KX904888 ; END; BEGIN TAXA; TITLE Taxa3; DIMENSIONS NTAX=16; TAXLABELS Tuber_badium_KX904889 Tuber_depressum_KX904890 Tuber_depressum_KX904891 Tuber_depressum_KX904892 Tuber_excavatum_FJ748899 Tuber_excavatum_HM485355 Tuber_fulgens_HM485358 Tuber_iranicum_4939_MN854634 Tuber_iranicum_4965_MN854635 Tuber_neoexcavatum_KY013625 Tuber_neoexcavatum_KY013626 Tuber_neoexcavatum_KY013633 Tuber_neoexcavatum_KY013634 Tuber_pseudoexcavatum_MG871289 Tuber_verrucosivolvum_KX904887 Tuber_verrucosivolvum_KX904888 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M54828] TITLE Tuber_ITS_Alignment; LINK TAXA = Taxa2; DIMENSIONS NCHAR=899; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Tuber_badium_KX904889 AAGGATCATTAAAAA---GTGTAGGGGACCGGCGTGTTCG------------------------------------GTCCCCGACCCCAAACCT-CCCCGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCAGCCCTT-----------------GCTG-------------------------------------------------------------------------------------------------CCCGTCC---------------------------------------------CACCATGCCC-AGTGG---CAGGACGGAGGTGCCTGGGGAAGGGCCCAAA--------CA-GAAACTCT-----------------------------------GGTGC-ACACGGACT----------GTCTGAGT--------GGGCCATGTG------CCCGGTAAATT--GAA------CAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAGCAACCTTCTCACGGATCCC-GTGGTGTTGGTGGAAG-------CTCC-CCGTGG-CCCTGGGGGCTGCGTC---ACAGCTCCGCCAAAATGCATAGGCAGGACAAGTGGGTCTC-AGCGAGCGACTTAGTAA-GTGTCGTGAAGACGTACAGCAGTCCGCA-GCTAGGCC-T--TGCCCTG--CGCATCCAGATCCACCCCCCCCCCCTATCTGGTGTGATCTCTCTCTAGGTTGACCTC Tuber_depressum_KX904890 AAGGATCATTAAAAA---GTGTAGGGGACCCGTGTGTTCG------------------------------------GTCCCCCACCCCAAACCT-CCCCGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCAGCCCTT-----------------GCTG-------------------------------------------------------------------------------------------------CCCGTCC---------------------------------------------CACCATGCCC-AGTGG---CAGGACGGAGGTGCCTGGGGAAGGGCCCAAA--------CT-GAAACTCT-----------------------------------TGTGG-ACACAGGCT----------GTCTGAGT--------GGGCCATGTG------CCCGGCAAATT--GAA------CAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAGCAACCTTCTCACGCATCCC-GTGGTGTTGGTGGAAG-------CTCC-CCGTGG-CCCTCCTGGTCGCGCG---GCAGCTCCGCTGAAATGCATAGGCAGGACAAGTTGGCCTC-AGCGAGCGACTTAGTAG-GTGTCGTCAAGACGTACAGCAGTCCCCA-GCTAGGCC-T--CGCCCTG--CACATCCAGATCC------CCCCCCTATCTGGTGTGATCTCTCTCTAGGTTGACCTC Tuber_depressum_KX904891 AAGGATCATTAAAAA---GTGTAGGGGACCCGTGTGTTCG------------------------------------GTCCCCCACCCCAAACCT-CCCCGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCACCCCTT-----------------GCTG-------------------------------------------------------------------------------------------------CCCGTCC---------------------------------------------CACCATGCCC-AGTGG---CAGGACGGAGGTGCCTGGGGAAGGGCCCAAA--------CT-GAAACTCT-----------------------------------TGTGG-ACACAGGCT----------GTCTGAGT--------GGGCCATGTG------CCCGGCAAATT--GAA------CAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCATTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAGCAACCTTCTCACGCATCCC-GTGGTGTTGGTGGAAG-------CTCC-CCGTGG-CCCTCCTGGTCGCGCG---GCAGCTCCGCTGAAATGCATAGGCAGGACAAGTTGGCCTC-AGCGAGCGACTTAGTAG-GTGTCGTCAAGACGTACAGCAGTCCCCA-GCTAGGCC-T--CGCCCTG--CACATCCAGATCC------CCCCCCTATCTGGTGTGATCTCTCTCTAGGTTGACCTC Tuber_depressum_KX904892 AAGGATCATTAAAAA---GTGTAGGGGACCCGTGTGTTCG------------------------------------GTCCCCCACCCCAAACCT-CCCCGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCAGCCCTT-----------------GCTG-------------------------------------------------------------------------------------------------CCCGTCC---------------------------------------------CACCATGCCC-AGTGG---CAGGACGGAGGTGCCTGGGGAAGGGCCCAAA--------CT-GAAACTCT-----------------------------------TGTGG-ACACAGGCT----------GTCTGAGT--------GGGCCATGTG------CCCGGCAAATT--GAA------CAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAGCAACCTTCTCACGCATCCC-GTGGTGTTGGTGGAAG-------CTCC-CCGTGG-CCCTCCTGGTCGCGCG---GCAGCTCCGCTGAAATGCATAGGCAGGACAAGTTGGCCTC-AGCGAGCGACTTAGTAG-GTGTCGTCAAGACGTACAGCAGTCCCCA-GCTAGGCC-T--CGCCCTG--CACATCCAGATCC------CCCCCCTATCTGGTGTGATCTCTCTCTAGGTTGACCTC Tuber_excavatum_FJ748899 ???????????????---??????????????????TGTGC----------------------------------GGTTCCCGGGTTC?AACCC--TCCGAGTACCCA-TCCATGTTGCTTCCCCAGGCCGGCAGTCCTT-----------------GCTG-------------------------------------------------------------------------------------------------CCCGTCTCC-------------------------------------------CTCCATGTCT-GGTCG---TGGGATGGAGGTGTCTGGGGAGGGGTCCAAA--------CA-GAAACTCT-----------------------------------TGTGA-ACACAGGCA----------GTCTGAGCG-------GGCCCATGTG------CCCTGTGAATATTGAA------CAAGTTATAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAACAACCTCCTCACGCACCCC-GTGGTATTGGTGGAAG--------CTAGCCGTGGGCCATCTCGGCTGCGGC---GCTGCTCTGCTGAAATGCATAAGCAGGACAACTGGGCCTC-AGCGAGTGACTTAGTAAAGTGTCATCAAGACCTAGAGCAGTCATCA-GCTATGGCTT---GCCCTG--CCCACCCGGACAC---------TCCCATCCGGCGTGAACCCTT----GGTTGACCTC Tuber_excavatum_FM205555 AAGGATCATTAAACA---A-GTGTGTGACTTGCATATCCGCTCCCCGACCTGTGGGGAGGTCTAAGTGTATGTGCAGTCCCCGACCTTAAACCT-CTCTGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCAGCCATT-----------------GCTG-------------------------------------------------------------------------------------------------CCTGTCCCC-------------------------------------------GATCATGTGT-GGTTG---TGGGATGGAGGTGCCTGGGGAAGGGCCCGAA--------CA-GAAACTCT-----------------------------------GGTGC-ACACATGCT----------GTCTGAGT--------GGGCCATGTG------CCCGGCATATTTTGAA------CAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAGAAACCTCCTCATGGATCCT-GTGGTGTTGGTGGAAG-------CTTT-CTGTGG-CCCCGCTGGCTGCATC---ACTGCTCCACCGAAATGCATAAGCAGGACAAGTGGGCCTT-AGCGAGTGACTTAGTAA-GTGTCGTGAAGACGTAGAGCAGTCAGCA-GCTAGGCCCTAGTACCCTGTACACATCCAGACCC------CCTCCGTATCTGGTGTGATCTCTC----GGTTGACCTC Tuber_excavatum_FM205556 AAGGATCATTAAACA---ATGTGTG-GACTTGCATATCCGCTCCCCGACCTGTGGGGAGGTCTAAGTGTATGTGCAGTCCCCGACCTTAAACCT-CTCTGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCAGCCATT-----------------GCTG-------------------------------------------------------------------------------------------------CCTGTCCCC-------------------------------------------GATCATGTGT-GGTTG---TGGGATGGAGGTGCCTGGGGAAGGGCCCGAA--------CA-GAAACTCT-----------------------------------GGTGC-ACACATGCT----------GTCTGAGT--------GGGCCATGTG------CCCGGCATATTTTGAA------CAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAGAAACCTCCTCATGGATCCT-GTGGTGTTGGTGGAAG-------CTTT-CTGTGG-CCCCGCTGGCTGCATC---ACTGCTCCACCGAAATGCATAAGCAGGACAAGTGGGCCTT-AGCGAGTGACTTAGTAA-GTGTCGTGAAGACGTAGAGCAGTCAGCA-GCTAGGCCCTAGTACCCTGTACACATCCAGACCC------CCTCCGTATCTGGTGTGATCTCTC----GGTTGACCTC Tuber_excavatum_FM205561 AAGGATCATTAGTATACAGTATCGG-GACCGTCATGTACG------------------------------------GTTCCCGGGTTCAAACCC--TCCGTGTACCCA-TCCATGTTGCTTCCCCAGGCCGGCAGTCCTT-----------------GCTG-------------------------------------------------------------------------------------------------CCCGTCTCC-------------------------------------------CTCCATGTCT-GGTCG---TGGGACGGAGGTGTCTGGGGAGGGGTCCAAA--------CA-GAAACTCT-----------------------------------TGTGA-ACACAGGCA----------GTCTGAGCG-------GGCCCATGTG------CCCTGTGAATATTGAA------CAAGTTATAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAACAACCTCCTCACGCACCCC-GTGGTATTGGTGGAAG--------CTAGCCGTGGGCCATCTCGGCTGCGGC---GCTGCTCTGCTGAAATGCATAAGCAGGACAACTGGGCCTC-AGCGAGTGACTTAGTAAAGTGTCATCAAGACCTAGAGCAGTCATCA-GCTATGGCTT---GCCCTG--CCCACCCGGACAC---------TCCCATCCGGCGTGAACCCTT----GGTTGACCTC Tuber_excavatum_FM205662 AAGGATCATTAAACA---ATGTGTG-GACTCGCATATCCGCTCCCCGACCTGTGGGGAGGTCTAAGTGCATGTGCAGTCCCCGATCTCAAACCT-CTCTGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCAGCCATT-----------------GCTG-------------------------------------------------------------------------------------------------CCTGTCCCC-------------------------------------------GACCATGTAT-GGTTG---TGGGATGGAGGTGCCTGGGGAAGGGCCCGAA--------CA-GAAACTCT-----------------------------------GGTGC-ACACATGCT----------GTCTGAGT--------GGGCCATGTG------CCCGGCATATTTTGAA------CAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGTGTCACTAGAAACCTCCTCATGGATCCC-GTGGTATTGGTGGAAG-------CTCT-CTGTGG-CCCTGTGGGCTGCGTC---ACTGCTCCGCCGAAATGCATAAGCAGGATAAGTGGGCCTC-AGCGAGTGACTTAGTAA-GTGTCGTGAAGACGTAGAGCAGTCAGCA-GCTAGGCTCTAGTACCTTGTATACATCCAGACCT------CCTCCGTATCTGGTGTGATCTCTT----GGTTGACCTC Tuber_excavatum_FN433140 AAGGATCATTAAACA---ATGTGTG-GACTCGCATATCCGCTCCCCGACCTGTGGGGAGGTCTAAGTGCATGTGCAGTCCCCGATCTCAAACCT-CTCTGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCAGCCATT-----------------GCTG-------------------------------------------------------------------------------------------------CCTGTCCCC-------------------------------------------GACCATGTAT-GGTTG---TGGGATGGAGGTGCCTGGGGAAGGGCCCGAA--------CA-GAAACTCT-----------------------------------GGTGC-ACACATGCT----------GTCTGAGT--------GGGCCATGTG------CCCGGCATATTTTGAA------CAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGTGTCACTAGAAACCTCCTCATGGATCCC-GTGGTATTGGTGGAAG-------CTCT-CTGTAG-CCCTGTGGGCTGCGTC---ACTGCTCCGCCGAAATGCATAAGCAGGATAAGTGGGCCTC-AGCGAGTGACTTAGTAA-GTGTCGTGAAGACGTAGAGCAGTCAGCA-GCTAGGCTCTAGTACCTTGTATACATCCAGACCT------CCTCCGTATCTGGTGTGATCTCTT----GGTTGACCTC Tuber_excavatum_FN433141 AAGGATCATTAAACA---ATGTGTG-GACTCGCATATCCGCTCCCCGACCTGTGGGGAGGTCTAAGTGCATGTGCAGTCCCCGATCTCAAACCT-CTCTGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCAGCCATT-----------------GCTG-------------------------------------------------------------------------------------------------CCTGTCCCC-------------------------------------------GACCATGTAT-GGTTG---TGGGATGGAGGTGCCTGGGGAAGGGCCCGAA--------CA-GAAACTCT-----------------------------------GGTGC-ACACATGCT----------GTCTGAGT--------GGGCCATGTG------CCCGGCATATTTTGAA------CAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGTGTCACTAGAAACCTCCTCATGGATCCC-GTGGTATTGGTGGAAG-------CTCT-CTGTAG-CCCTGTGGGCTGCGTC---ACTGCTCCGCCGAAATGCATAAGCAGGATAAGTGGGCCTC-AGCGAGTGACTTAGTAA-GTGTCGTGAAGACGTAGAGCAGTCAGCA-GCTAGGCTCTAGTACCTTGTATACATCCAGACCT------CCTCCGTATCTGGTGTGATCTCTT----GGTTGACCTC Tuber_excavatum_FN433142 AAGGATCATTAAAAA---GTATCGG-GACCCCCATATCCG------------------------------------GTCCCCGAGCTCCAAACCCCTCCGAGTACCCA-TCCATGTTGCTTCCCCAGGCCAGCAGCCATT-----------------GCTG-------------------------------------------------------------------------------------------------CCTGTCC---------------------------------------------GACCATGCCC-GGTCA---CAGGACGGAGGTGCCTGGGGAGGGGCTCAAA--------CA-GAAACTCT-----------------------------------GGTAC-ACACAGGCT----------GTCTGAGT--------GGGCCATGTGC-----CCTGCAAGATT--GAA------CGAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAACAACCTTCTCACGGATCCC-GTGGTAGTGGCGGAAG-------CTCCACTGTGT-CCCTCTGGGCTGCGGT---GCAGCTCCGCTGAAATGCATAAGCAGGACAAGTGGGCCTC-AGCGAGTGACTTAGTAA-GTGTCTTGAAGACGTAGAGCAGTCAGCA-GCTAGGCCAT---ACCCTG--CCCACCAGGACTCC-----TCCCCC-ATCTGGTGTGAACTCTT----GGTTGACCTC Tuber_excavatum_HM152012 AAGGATCATTAAACA---ATGTGTG-GACTTGCATATCCGCTCCCCGACCTGTGGGGAGGTCTAAGTGTATGTGCAGTCCCCGACCTTAAACCT-CTCTGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCAGCCATT-----------------GCTG-------------------------------------------------------------------------------------------------CCTGTCCCC-------------------------------------------GATCATGTGT-GGTTG---TGGGATGGAGGTGCCTGGGGAAGGGCCCGAA--------CA-GAAACTCT-----------------------------------GGTGC-ACACATGCT----------GTCTGAGT--------GGGCCATGTG------CCCGGCATATTTTGAA------CAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAGAAACCTCCTCATGGATCCT-GTGGTGTTGGTGGAAG-------CTTT-CTGTGG-CCCCGCTGGCTGCATC---ACTGCTCCACCGAAATGCATAAGCAGGACAAGTGGGCCTT-AGCGAGTGACTTAGTAA-GTGTCGTGAAGACGTAGAGCAGTCAGCA-GCTAGGCCCTAGTACCCTGTACACATCCAGACCC------CCTCCGTATCTGGTGTGATCTCTC----GGTTGACCTC Tuber_excavatum_HM152013 AAGGATCATTAAACA---ATGTGTG-GACTTGCATATCCGCTCCCCGACCTGTGGGGAGGTCTAAGTGTATGTGCAGTCCCCGACCTTAAACCT-CTCTGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCAGCCATT-----------------GCTG-------------------------------------------------------------------------------------------------CCTGTCCCC-------------------------------------------GATCATGTGT-GGTTG---TGGGATGGAGGTGCCTGGGGAAGGGCCCGAA--------CA-GAAACTCT-----------------------------------GGTGC-ACACATGCT----------GTCTGAGT--------GGGCCATGTG------CCCGGCATATTTTGAA------CAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAGAAACCTCCTCATGGATCCT-GTGGTGTTGGTGGAAG-------CTTT-CTGTGG-CCCCGCTGGCTGCATC---ACTGCTCCACCGAAATGCATAAGCAGGACAAGTGGGCCTT-AGCGAGTGACTTAGTAA-GTGTCGTGAAGACGTAGAGCAGTCAGCA-GCTAGGCCCTAGTACCCTGTACACATCCAGACCC------CCTCCGTATCTGGTGTGATCTCTC----GGTTGACCTC Tuber_excavatum_HM152018 AAGGATCATTAAAAA---GTGTGGGTGCCCCA-ATGTCGG------------------------------------GTCCCCAACCTCAAACCT-CTCTGAGTACCTA-TCCATGTTGCTTTCCCAGGCCAGCAGCCCCT-----------------GCTG-------------------------------------------------------------------------------------------------CCCGTTC---------------------------------------------GACCATGCCC-GGTTG---CAGGACGGAGGTGCCTGGGGAAGGGCCCGAA--------CA-GATACCCT-----------------------------------GGTGA-ACACGGACT----------GTCTGAGT--------GGGCCATGTG------CCTGACAAATT--GAA------CAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTATCAACCATCTCACGGATCCCCGTGGTATTGGTGGAAGTGCTCCCCCCC-CCGTGG-CCATGCTGGCCGGGCC---GTAGCTCCACCAAAATGCATGAGCAGGACAAGGAGGCCTC-AGCGAGTGACTTAGTAA-CTGTCGTGAAGACGTAGAGCAGTCAGCAAGCTAGGCCAT--TGCCCTG--CACACCCAGATAT------CCCCCCATTCTGGCGTGATCTCTC----GGTTGACCTC Tuber_excavatum_HM485355 ???????????????---????????????????????CG------------------------------------GTCCCCGAGCTCCAAACCCCTCCGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCAGCCATT-----------------GCTG-------------------------------------------------------------------------------------------------CCTGTCT---------------------------------------------GACCATGCCC-GGTCA---CAGGACAGAGGTGCCTGGGGAGGGGCTCAAA--------CA-GAAACTCT-----------------------------------AGTAC-ACACAGGCT----------GTCTGAGT--------GGGCCATGTGC-----CCTGCAAGATT--GAA------CGAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAACAACCTTCTCACGGATCCC-GTGGTAGTGGCG-AAG-------CTCCACTGTGC-CCCTCTGGGCTGCGGT---GCAGCTCCGCTGAAATGCATAAGCAGGACAAGTGGGCCTC-AGCGAGTGACTTAGTAA-GTGTCTTGAAGACGTAGAGCAGTCAGCA-GCTAGGCCAT---GCCCTG--CCCACCAGGACTC------CTCCCCCATCTGGTGTGAACTCTT----GGTTGACCTC Tuber_excavatum_KC330227 AAGGATCATTAAAAAA--GTATCGG-GACCCCCATATCCG------------------------------------GTCCCCGAGCTCCAAACCCCTCCGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCAGCCATT-----------------GCTG-------------------------------------------------------------------------------------------------CCTGTCT---------------------------------------------GACCATGCCC-GGTCA---CAGGACAGAGGTGCCTGGGGAGGGGCTCAAA--------CA-GAAACTCT-----------------------------------AGTAC-ACACAGGCT----------GTCTGAGT--------GGGCCATGTGC-----CCTGCAAGATT--GAA------CGAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAACAACCTTCTCACGGATCCC-GTGGTAGTGGCGGAAG-------CTCCACTGTGC-CCCTCTGGGCTGCGGT---GCAGCTCCGCTGAAATGCATAAGCAGGACAAGTGGGCCTC-AGCGAGTGACTTAGTAA-GTGTCTTGAAGACGTAGAGCAGTCAGCA-GCTAGGCCAT---GCCCTG--CCCACCAGGACTCC-----TCCCCC-ATCTGGTGTGAACTCTT----GGTTGACCTC Tuber_excavatum_KJ524533 AAGGATCATTAAAAAA--GTATCGG-GACCCCCATATCCG------------------------------------GTCCCCGAGCTCCAAACCCCTCCGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCAGCCATT-----------------GCTG-------------------------------------------------------------------------------------------------CCTGTCT---------------------------------------------GACCATGCCC-GGTCA---CAGGACAGAGGTGCCTGGGGAGGGGCTCAAA--------CA-GAAACTCT-----------------------------------AGTAC-ACACAGGCT----------GTCTGAGT--------GGGCCATGTGC-----CCTGCAAGATT--GAA------CGAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAACAACCTTCTCACGGATCCC-GTGGTAGTGGCGGAAG-------CTCCACTGTGC-CCCTCTGGGCTGCGGT---GCAGCTCCGCTGAAATGCATAAGCAGGACAAGTGGGCCTC-AGCGAGTGACTTAGTAA-GTGTCTTGAAGACGTAGAGCAGTCAGCA-GCTAGGCCAT---GCCCTG--CCCACCAGGACTCC-----TCCCCC-ATCTGGTGTGAACTCTT----GGTTGACCTC Tuber_excavatum_Var_intermedium_HM151977 AAGGATCATTAAAAA---GTATCGG-GACCCCCATATCCG------------------------------------GTCCCCGAGCTCCAAACCCCTCCGAGTACCCA-TCCATGTTGCTTCCCCAGGTCAGCAGCCATT-----------------GCTG-------------------------------------------------------------------------------------------------CCTGTCC---------------------------------------------GACCATGCCC-GGTCA---CAGGACGGAGGTGCCTGGGGAGGGGCTCAAA--------CA-GAAACTCT-----------------------------------GGTAC-ACACAGGCT----------GTCTGAGT--------GGGCCATGTGC-----CCTGCAAGATT--GAA------CGAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAACAACCTTCTCACGGATCCC-GTGGTAGTGGCGGAAG-------CTCCACTGTGC-CCCTCTGGGCTGCGGT---GCAGCTCCGCTGAAATGCATAAGCAGGACAAGTGGGCCTC-AGCGAGTGACTTAGTAA-GTGTCTTGAAGACGTAGAGCAGTCAGCA-GCTAGGCCAT---GCCCTG--CCCACCAGGACTCC-----CCCCCCCATCTGGTGTGAACTCTT----GGTTGACCTC Tuber_excavatum_Var_longisporum_HM152005 AAGGATCATTAAAAA---GTATCGG-GACCCCCATATCCG------------------------------------GTCCCCGAGCTCCAAACCCCTCCGAGTACCCA-TCCATGTTGCTTCCCCAGGTCAGCAGCCATT-----------------GCTG-------------------------------------------------------------------------------------------------C{CT}TGTCC---------------------------------------------GACCATGCCC-GGTCA---CAGGACGGAGGTGCCTGGGGAGGGGCTCAAA--------CA-GAAACTCT-----------------------------------GGTAC-ACACAGGCT----------GTCTGAGT--------GGGCCATGTGC-----CCTGCAAGATT--GAA------CGAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAACAACCTTCTCACGGATCCC-GTGGTAGTGGCGGAAG-------CTCCACTGTGC-CCCTCTGGGCTGCGGT---GCAGCTCCGCTGAAATGCATAAGCAGGACAAGTGGGCCTC-AGCGAGTGACTTAGTAA-GTGTCTTGAAGACGTAGAGCAGTCAGCA-GCTAGGCCAT---GCCCTG--CCCACCAGGACTCC-----CCCCCCCATCTGGTGTGAACTCTT----GGTTGACCTC Tuber_fulgens_FM205568 AAGGATCATTAAACA---ATGTGTG-GACTCGCATATCCGCTCCCCGACCTGTGGGGAGGTCTAAGTGCATGTGCAGTCCCCGATCTCAAACCT-CTCTGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCAGCCATT-----------------GCTG-------------------------------------------------------------------------------------------------CCTGTCCCC-------------------------------------------GACCATGTAT-GGTTG---TGGGATGGAGGTGCCTGGGGAAGGGCCCGAA--------CA-GAAACTCT-----------------------------------GGTGC-ACACATGCT----------GTCTGAGT--------GGGCCATGTG------CCCGGCATATTTTGAA------CAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGTGTCACTAGAAACCTCCTCATGGATCCC-GTGGTATTGGTGGAAG-------CTCT-CTGTAG-CCCTGTGGGCTGCGTC---ACTGCTCCGCCGAAATGCATAAGCAGGATAAGTGGGCCTC-AGCGAGTGACTTAGTAA-GTGTCGTGAAGACGTAGAGCAGTCAGCA-GCTAGGCTCTAGTACCTTGTATACATCCAGACCT------CCTCCGTATCTGGTGTGATCTCTT----GGTTGACCTC Tuber_fulgens_HM152021 AAGGATCATTAAAAA---ATGGTTGGGACCCCCACA?TTAA----------------------------------GGTCCCCCAGCGCAAACCT-CCTTGAGTACCAA-TCCATGTTGCTTCCCCAGGCCAGCAGCCATT-----------------GCTG-------------------------------------------------------------------------------------------------CCCATCC---------------------------------------------TACCGTGCCT-GGTCA---CAGGATGGAGGTGCCTGGGGAGGGGTCCAAAAG------CA-GAAACTCT-----------------------------------GGTGC-ACACATGCT----------GTCTGAGTTGG----TGGGCCATGTG------CCCTGTTAATT--GAA------TTATTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCATCACTAGCAACCATCTCACGGATGCCCGTGGTCTTGGTGGAAG-------CTTC-CTGCGC-CCCCTTTGGGTGCAGC---AAAGCTCCGCTGAAATGTATAAGCAGGACAAACAGGTCCC-GGCGAGTGACTTAGTAA-GTGTCGTGAAGACGTAGACCAGTCAGCA-GCCAGGCCTT---GCCCTG--TTCACCCAGAC---------CTCCCCATCTGGTGTGATCTCTT----GGTTGACCTC Tuber_fulgens_HM152024 AAGGATCATTAAAAA---ATGGTTTGGTCCCCT-CA?TAAA----------------------------------GGTCCTCCAGGGCAAACCTTCCTTGAGTAGCAA-TTCATGTTGTTTCTCCAGGCCAGCAGCCATT-----------------GCTG-------------------------------------------------------------------------------------------------CCCATCC---------------------------------------------TACCGTGCCTTGGTCA---CAGGATTGAGGTGCCTGGGGAGGGGTCCAAAAG------CA-GAAACTTT-----------------------------------GGTGC-ACACATGCT----------GTCTGAGTTGG----TGGGCCATGTGG-----CCCTGTTAATT--GAA------TTATTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCATCACTAGCAACCATCTCACGGAT-CCCGTGGTCTTGGTGGAAG-------CTTC-CTGCGC-CCCGTTTGGGTGCAGC---AAAGCTCCGCTGAAATGTATAAGCAGGACAAACAGGTCCC-GGCGAGTGACTTAGTAA-GTGTCGTGAAGACGTAGACCAGTCAGCA-GACAGGCCTT---GCCCTG--TTCACCCAGAC---------CTCCCCATCTGGTGTGATCTCTT----GGTTGACCTC Tuber_fulgens_HM485358 AAGGATCATTAAAAA---ATGGTTGGGACCCCC-CACATAA----------------------------------GGTCCCCGAGCCCAAACCT-CCCTGAGTACCAA-TCCATGTTGCTTCCCCAGGCCAGCAGCCATT-----------------GCTG-------------------------------------------------------------------------------------------------CCCGTCC---------------------------------------------GGCCGTTCCTGGGTCA---CAGGACGGAGGTGCCTGGGGAGGGGTCCAAAAG------CA-GAAACTCT-----------------------------------GGTGC-ACACATGCT----------GTCTGAGTTGG----TGGGCCATGTG------CCCGGTTAATT--GAA------TTATTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAGCAACCATCTCACGGAT-CCCGTGGTCTTGGTGGAAG-------CTTC-CTGCGG-CCCCTTTGGCTGCAGC---AAAGCTCCGCTGAAATGTATAAGCAGGACAAACAGGCCCC-GGCGAGTGACTTAGTAA-GTGTCGTGAAGACGTAGACCAGTCAGCA-GCCAGGCCTT---GCCCTG--TTCACCCAGACAC------CCCCCCCATCTGGTGTGATCTCTT----GGTTGACCTC Tuber_fulgens_JQ288917 AAGGATCATTAAAAA---GTGTGGGTGCCCCA-ATGTCGG------------------------------------GTCCCCAACCTCAAACCT-CTCTGAGTACCTA-TCCATGTTGCTTTCCCAGGCCAGCAGCCCCT-----------------GCTG-------------------------------------------------------------------------------------------------CCCGTTC---------------------------------------------GACCATGCTC-GGTCG---CAGGACGGAGGTGCCTGGGGAAGGGCCCGAA--------CA-GATACCCT-----------------------------------GGTGA-ACACGGACT----------GTCTGAGT--------GGGTCATGTG------CCCGGCAAATT--GAA------CAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTATCAACCATCTCACGGATCCC-GTGGTATTGGTGGAAGTGCTCCCCCCC-C-ATGG-CCATGCTGGCCGGGCC---GTAGCTCCACCGAAATGCATGAGCAGGACAAGGGGGCCTC-AGCGAGTGACTTAGTAA-CTGTCGTCAAGACGTAGAGCAGTCAGCAAGCTAGGCCAT--TGCCCTG--CACACCCAGATAT------CCCCCCAT-CTGGCGTGATCTCTC----GGTTGACCTC Tuber_iranicum_4939_MN854634 AAGGATCATTAAACA---ATGTGTG-GACTTGCATATCCGCTCCCCGACCTGTGGGGAGGTCTAAGTGCATGTGCAGTCCCCGATCTTAAACCT-CTCTGAGTACCTA-TCCATGTTGCTTTCCCAGGCCAGCAGCCATT-----------------GCTG-------------------------------------------------------------------------------------------------CCTGTCCCC-------------------------------------------GACCATGTGT-GGTTG---CGGGATGGAGGTGCCTGGGGAAGGGCCCGAA--------CA-GAAACTCTT----------------------------------GGTGC-ACACATGCT----------GTCTGAGT--------GGGCCATGTG------CCCAGCATATTTTGAA------CAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAGAAACCTCCTCACGGATCCC-GTGGTGTTGGTGGAAG-------CTCT-CTGTAG-CCCCGCTGGCTGCGTC---ACTGCTCCGCCGAAATGCATAACCAGGACAAGTGTGCCTC-AGCGATTGACTTAGTAA-GTGTCGTGAAGACGTAGAGCAGTCAGCA-GCTAGGACCTAGTACCCTGTACACATCCAGACCC------CCTCCGTATCTGGTGTGATCTCTC----GGTTGACCTC Tuber_iranicum_4965_MN854635 AAGGATCATTAAACA---ATGTGTG-GACTTGCATATCCGCTCCCCGACCTGTGGGGAGGTCTAAGTGCATGTGCAGTCCCCGATCTTAAACCT-CTCTGAGTACCTA-TCCATGTTGCTTTCCCAGGCCAGCAGCCATT-----------------GCTG-------------------------------------------------------------------------------------------------CCTGTCCCC-------------------------------------------GACCATGTGT-GGTTG---CGGGATGGAGGTGCCTGGGGAAGGGCCCGAA--------CA-GAAACTCTT----------------------------------GGTGC-ACACATGCT----------GTCTGAGT--------GGGCCATGTG------CCCAGCATATTTTGAA------CAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAGAAACCTCCTCACGGATCCC-GTGGTGTTGGTGGAAG-------CTCT-CTGTAG-CCCCGCTGGCTGCGTC---ACTGCTCCGCCGAAATGCATAACCAGGACAAGTGTGCCTC-AGCGATTGACTTAGTAA-GTGTCGTGAAGACGTAGAGCAGTCAGCA-GCTAGGACCTAGTACCCTGTACACATCCAGACCC------CCTCCGTATCTGGTGTGATCTCTC----GGTTGACCTC Tuber_neoexcavatum_KY013625 AAGGATCATTAAACA---GTGTGGGGGACCCGCGTGTCTG------------------------------------GTCCCCGACCTCAAACCT-CCCCGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCAGCCATT-----------------GCCG-------------------------------------------------------------------------------------------------CCCGTCC---------------------------------------------GACCATGCCC-AGTGGTGGCAGGACGGAGGTGCCTGGGGAAGGGCCCAAA--------CAAGAAACTCT-----------------------------------GGTGC-ACACAGGCT----------GTCTGAGT--------GGGCCATGTG------CCCGGCAAATT--GAA------CAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAGCAACCTTCTCACGCATCCC-GTGGTGTTGGTGGAAG-------CTCC-CTGTGG-CCAGCAGGGCCACGTG---ACAGCTCCGCCGAAATGCATAAGCAGGACAAGTGGGCCTC-AGCGAGCGACTTAGTAA-GTGTCATGAAGACGTACAGCAGTCTGCA-GCTAGGCC-T--CGCCCTG--CAAACCCAGATCC------CCCCCCGATCTGGTATGATCCTCCT--AGGTTGACCTC Tuber_neoexcavatum_KY013626 AAGGATCATTAAACA---GTGTGGGGGACCCGCGTGTCTG------------------------------------GTCCCCGACCTCAAACCT-CCCCGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCAGCCATT-----------------GCCG-------------------------------------------------------------------------------------------------CCCGTCC---------------------------------------------GACCATGCCC-AGTGGTGGCAGGACGGAGGTGCCTGGGGAAGGGCCCAAA--------CAAGAAACTCT-----------------------------------GGTGC-ACACAGGCT----------GTCTGAGT--------GGGCCATGTG------CCCGGCAAATT--GAA------CAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAGCAACCTTCTCACGCATCCC-GTGGTGTTGGTGGAAG-------CTCC-CTGTGG-CCAGCAGGGCCACGTG---ACAGCTCCGCCGAAATGCATAAGCAGGACAAGTGGGCCTC-AGCGAGCGACTTAGTAA-GTGTCATGAAGACGTACAGCAGTCTGCA-GCTAGGCC-T--CGCCCTG--CAAACCCAGATCC------CCCCCCGATCTGGTATGATCCTCCT--AGGTTGACCTC Tuber_neoexcavatum_KY013632 AAGGATCATTAAACA---GTGTGGGGGACCCGCGTGTCTG------------------------------------GTCCCCGACCTCAAACCT-CCCCGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCAGCCATT-----------------GCCG-------------------------------------------------------------------------------------------------CCCGTCC---------------------------------------------GACCATGCCC-AGTGGTGGCAGGACGGAGGTGCCTGGGGAAGGGCCCAAA--------CAAGAAACTCT-----------------------------------GGTGC-ACACAGGCT----------GTCTGAGT--------GGGCCATGTG------CCCGGCAAATT--GAA------CAAGTAAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAGCAACCTTCTCACGCATCCC-GTGGTGTTGGTGGAAG-------CTCC-CCGTGG-CCAGCAGGGCCACGTG---ACAGCTCCGCCGAAATGCATAAGCAGGACAAGTGGGCCTC-AGCGAGCGACTTAGTAA-GTGTCATGAAGACGTACAGCAGTCTGCA-GCTAGGCC-T--CGCCCTG--CAAACCCAGATCC------CCCCCCGATCTGGTATGATCCTCCT--AGGTTGACCTC Tuber_neoexcavatum_KY013633 AAGGATCATTAAACA---GTGTGGGGGACCCGCGTGTCTG------------------------------------GTCCCCGACCTCAAACCT-CCCCGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCAGCCATT-----------------GCCG-------------------------------------------------------------------------------------------------CCCGTCC---------------------------------------------GACCATGCCC-AGTGGTGGCAGGACGGAGGTGCCTGGGGAAGGGCCCAAA--------CAAGAAACTCT-----------------------------------GGTGC-ACACAGGCT----------GTCTGAGT--------GGGCCATGTG------CCCGGCAAATT--GAA------CAAGTAAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAGCAACCTTCTCACGCATCCC-GTGGTGTTGGTGGAAG-------CTCC-CCGTGG-CCAGCAGGGCCACGTG---ACAGCTCCGCCGAAATGCATAAGCAGGACAAGTGGGCCTC-AGCGAGCGACTTAGTAA-GTGTCATGAAGACGTACAGCAGTCTGCA-GCTAGGCC-T--CGCCCTG--CAAACCCAGATCC------CCCCCCGATCTGGTATGATCCTCCT--AGGTTGACCTC Tuber_neoexcavatum_KY013634 AAGGATCATTAAACA---GTGTGGGGGACCCGCGTGTCTG------------------------------------GTCCCCGACCTCAAACCT-CCCCGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCAGCCATT-----------------GCCG-------------------------------------------------------------------------------------------------CCCGTCC---------------------------------------------GACCATGCCC-AGTGGTGGCAGGACGGAGGTGCCTGGGGAAGGGCCCAAA--------CAAGAAACTCT-----------------------------------GGTGC-ACACAGGCT----------GTCTGAGT--------GGGCCATGTG------CCCGGCAAATT--GAA------CAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAGCAACCTTCTCACGCATCCC-GTGGTGTTGGTGGAAG-------CTCC-CTGTGG-CCAGCAGGGCCACGTG---ACAGCTCCGCCGAAATGCATAAGCAGGACAAGTGGGCCTC-AGCGAGCGACTTAGTAA-GTGTCATGAAGACGTACAGCAGTCTGCA-GCTAGGCC-T--CGCCCTG--CAAACCCAGATCC------CCCCCCGATCTGGTATGATCCTCCT--AGGTTGACCTC Tuber_neoexcavatum_KY013637 AAGGATCATTAAACA---GTGTGGGGGACCCGCGTGTCTG------------------------------------GTCCCCGACCTCAAACCT-CCCCGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCAGCCATT-----------------GCCG-------------------------------------------------------------------------------------------------CCCGTCC---------------------------------------------GACCATGCCC-AGTGGTGGCAGGACGGAGGTGCCTGGGGAAGGGCCCAAA--------CAAGAAACTCT-----------------------------------GGTGC-ACACAGGCT----------GTCTGAGT--------GGGCCATGTG------CCCGGCAAATT--GAA------CAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAGCAACCTTCTCACGCATCCC-GTGGTGTTGGTGGAAG-------CTCC-CCGTGG-CCAGCAGGGCCACGTG---ACAGCTCCGCCGAAATGCATAAGCAGGACAAGTGGGCCTC-AGCGAGCGACTTAGTAA-GTGTCATGAAGACGTACAGCAGTCTGCA-GCTAGGCC-T--CGCCCTG--CAAACCCAGATCC------CCCCCCGATCTGGTATGATCCTCCT--AGGTTGACCTC Tuber_pseudoexcavatum_MG871289 AAGGATCATTATTGA----TATCTGGGATATCTTTACAGA-------------------------------------TTCCCAATTACAAACCT-CTCTGGGTTTATACTCCATGTTGCTTTCACAAGTTAAGAGACATTCTTGCTTGCCAGTTGTAGCTGTCATTCATACTTGGTCAACTGTGTTACTGTTATTTTTCTTTCTCACTAGCCAGCAGGTGTAGTTCCCTGAGGTTTCTCCTTATTTGCTTTCCCATAACCCATCTCTGCTAGCAGTTTGCAACAAGCTGGTAGTTATGTTTGTCATGGCGAACCATATTTGCATTGCCTCAGCCCCTATCTGTTCGCTGACCGGTTAGGATAGCAGATCATTACATTGTAACCAATTCATGTATGCTACTACTGCTTGCGCTTTAGTACTATACAGGCACTTGTGAAAGGTCTCAACCAAGCTTTAAATTATGTGGTCTGACTTGGCCAAGTGCCATATCTCTTAAGTGAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGCTCGAGCGTCACAGAAAACCCCATCACAGTTCCT-GTGGTCTTGGTATGAG--------TGGGTTGTTAGTATGTGGAGACATGCTTATAACACTCTACCGAAATTTATAGACAGGATA-CCAGATATG-GGCAATAGACTTTGTAA-ATGTCCACAGGATATATATCAGTCA-CGTGTCATGTTTGG--TCCCTG-ATATTATTGGACTC-----------CTATTCTATACAAACATTG----GGTTGACCTC Tuber_sinoexcavatum_JX458717 AAGGATCATTAGGGTTT-GTCGTCGGGACCCC---ACATAG----------------------------------GGTCCCCGAGCTCAAACCT-CCCCGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCAGCCATTT----------------GCTG-------------------------------------------------------------------------------------------------CCCGTCC---------------------------------------------GACCATGCCT-GGTCA---CAGGACGGAGGTGCCTGGGGAGGGGCCCAAA--------CA-GAAACTCT-----------------------------------GGTGC-ACACAGGCT----------GTCTGAGTTGG----TGGGCCACGTG------CCCCGTGAATT--AAA------CAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATCCCTTAGGGCATGCCTGTTCGAGCGTCACTATCAACCCTCTCACGGAT-CCCGTGGTATTGGTGGAAG-------CTCC-CCGTGG-CCCCTTTGGCTGCGGC---ACAGCTCCGCTGAAATGCATAAGCAGGACAAACAGGCCCCCGGCGAGTGACTTAGTAA-GTGTCGTGAAGACGTAGACCAGTCAGCA-GCCAGGCCTT---GCCCTG--CCCACCCAGATCCC-----TCCCCCAATCTGGTGTTATCTCTT----GGTTGACCTC Tuber_sinoexcavatum_JX458718 AAGGATCATTAAAA----ATCGTCGGGACCCCC-CACATAG----------------------------------GGTCCACGAGGTCAAACCT-CCCCGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCAGCCATTT----------------GCTG-------------------------------------------------------------------------------------------------CCCGTCC---------------------------------------------GACCATGCCT-GGTCA---CAGGACGGAGGTGCCTGGGGAGGGGCCCAAA--------CA-GAAACTCT-----------------------------------GGTGC-ACACAGGCT----------GTCTGAGTTGG----TGGGCCACGTG------CCCCGTGAATT--AAA------CAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTCCGAGCGTCACTATCAACCCTCTCACGGAT-CCCGTGGTATTGGTGGAAG-------CTCC-CCGTGG-CCCCTTTGGCTGCGGC---ACAGCTCCGCTGAAATGCATAAGCAGGACAAACAGGCCCCCGGCGAGTGACTTAGTAA-GTGTCGTGAAGACGTAGACCAGTCAGCA-GCCAGGCCTT---GCCCTG--CCCACCCAGATCCC-----TCCCCCAATCTGGTGTTATCTCTT----GGTTGACCTC Tuber_verrucosivolvum_KX904887 AAGGATCATTAAAAAAAAATCATCGGGACCCTC-CACATAG----------------------------------GGTCCCCAAGCTCAAACCT-CCCCGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCAGCCATT-----------------GCTG-------------------------------------------------------------------------------------------------CCCGTCC---------------------------------------------AACCACGTCA-GGTGA---CAGGACGGAGGTGTCTGGGGAGGGGCCCAAA--------CA-GAAACTCT-----------------------------------GGTAT-ATACAGGCT----------GTCTGAGTTGG----TGGGCCATGTG------CCCGGTCAATT--GAA------CAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAGCAACCCTCTCACGCAT-CCTGTGGTATTGGTGGAAG-------CTTC-CCGTGG-CCCCTTGGGCTACGCC---ACAGCTCCGCTGAAATGCATAAGCAGGACAAACAGGCCCCCGGTGAGTGACTTAGTAA-CTGTCATGAAGACGTAGACCAGTCACCA-GCCAGGCCTT---GCCCTG--CCCACCCAGATC-------TCCCCCAATCTGGTGTGATGTCTT----GGTTGACCTC Tuber_verrucosivolvum_KX904888 AAGGATCATTAAAAAAAAATCATCGGGACCCTC-CACATAG----------------------------------GGTCCCCAAGCTCAAACCT-CCCCGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCAGCCATT-----------------GCTG-------------------------------------------------------------------------------------------------CCCGTCC---------------------------------------------AACCACGTCA-GGTGA---CAGGACGGAGGTGTCTGGGGAGGGGCCCAAA--------CA-GAAACTCT-----------------------------------GGTAT-ATACAGGCT----------GTCTGAGTTGG----TGGGCCATGTG------CCCGGTCAATT--GAA------CAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAGCAACCCTCTCACGCAT-CCTGTGGTATTGGTGGAAG-------CTTC-CCGTGG-CCCCTTGGGCTACGCC---ACAGCTCCGCTGAAATGCATAAGCAGGACAAACAGGCCCCCGGTGAGTGACTTAGTAA-CTGTCATGAAGACGTAGACCAGTCACCA-GCCAGGCCTT---GCCCTG--CCCACCCAGATC-------TCCCCCAATCTGGTGTGATGTCTT----GGTTGACCTC ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M54830] TITLE Tuber_Combined_matrix; LINK TAXA = Taxa3; DIMENSIONS NCHAR=1720; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 1710 1720] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Tuber_badium_KX904889 AAGGATCATTAAAAAG-------------------------------TGTAGGGGACCG-----GCGTGTTCGGTCCCCGACCCC-AAACCTCCCCGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCAGCCCTTGCTGCCCGTCC------------CACCATGCCCAGT------------------------------------GGCAGGA--------CGGAGGTGCCT-----------------------------------------------------------------------------------------------------------------------GGGGAAGGGCCCA-------------AA--CA-GAA----------------ACTCT-GGTGC-ACACGGACT------------------------------------GTCTGAGT----GGGCCATGTGCCCGGTAAATT--GAACAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAGCAACCTTCTCACGGATCCCGTGGTGTTGGTGGAAGCTCCCCGTGG-CCCTGGGGGCTGCGTC---ACAGCTCCGCCAAAATGCATAGGCAGGACAAGTGGGTCTC-AGCGAGCGACTTAGTAA-GTGTCGTGAAGACGTACAGCAGTCCGCAGCTAGGCCTTG---CCCTG--CGCATCCAGATCCACCCCCCCCCCCTATCTGGTGTGATCTCTCTCTAGGTTGACCTCGTAACGGCGAGTGAAGCGGCAA-GAGCTCAAATTTGAAATCTGGCGCCTCCGGTGTCCGAGTTGTAATTTGGAGAGGCATCTTTGGGAGGGGCCCAGTCTAAGCTCCTTGGAACAGCACGTCATAGAGGGTGAGAATCCCGTCCTCGGCCGGATGTTCCCTCCCGTAAAAAGCGCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTCTGACAAACAACCGTCCTTCTGGGCGGTGCACTTGTCCTGGGCTGGGCCAGCATCAGTTGGGACGGCGGGACAAAGGCCTGGGGAATGTGACTCCTCTGCGGAGCGTTATAGCCCCGAGCGCAATGCCGCCCGACCCGACTGTGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTCCAAA-CCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCCCGTCAGGGGTGCACCATCGACCGATCCTGATGTCCTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG Tuber_depressum_KX904890 AAGGATCATTAAAAAG-------------------------------TGTAGGGGACCC-----GTGTGTTCGGTCCCCCACCCC-AAACCTCCCCGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCAGCCCTTGCTGCCCGTCC------------CACCATGCCCAGT------------------------------------GGCAGGA--------CGGAGGTGCCT-----------------------------------------------------------------------------------------------------------------------GGGGAAGGGCCCA-------------AA--CT-GAA----------------ACTCT-TGTGG-ACACAGGCT------------------------------------GTCTGAGT----GGGCCATGTGCCCGGCAAATT--GAACAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAGCAACCTTCTCACGCATCCCGTGGTGTTGGTGGAAGCTCCCCGTGG-CCCTCCTGGTCGCGCG---GCAGCTCCGCTGAAATGCATAGGCAGGACAAGTTGGCCTC-AGCGAGCGACTTAGTAG-GTGTCGTCAAGACGTACAGCAGTCCCCAGCTAGGCCTCG---CCCTG--CACATCCAGATCC------CCCCCCTATCTGGTGTGATCTCTCTCTAGGTTGACCTCGTAACGGCGAGTGAAGCGGCAA-GAGCTCAAATTTGAAATCTGGCGCCTCCGGTGTCCGAGTTGTAATTTGGAGAGGCATCTTTGGGAGGGGCCCAGTCTAAGCTCCTTGGAACAGCACGTCATAGAGGGTGAGAATCCCGTCCTCGGCCGGATGTTCCCTCCCGTAAAAAGCGCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTCTGACAAACAACCGTCCTTCTGGGCGGTGCACTTGTCCTGGGCTGGGCCAGCATCAGTTGGGACGGCGGGACAAAGGCCTGGGGAATGTGACTCCTCTGAGGAGCGTTATAGCCCCGAGCGCAATGCCGCCCGACCCGACTGTGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTCCAAA-CCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCCCGTCAGGGGTGCACCATCGACCGATCCTGATGTCCTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG Tuber_depressum_KX904891 AAGGATCATTAAAAAG-------------------------------TGTAGGGGACCC-----GTGTGTTCGGTCCCCCACCCC-AAACCTCCCCGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCACCCCTTGCTGCCCGTCC------------CACCATGCCCAGT------------------------------------GGCAGGA--------CGGAGGTGCCT-----------------------------------------------------------------------------------------------------------------------GGGGAAGGGCCCA-------------AA--CT-GAA----------------ACTCT-TGTGG-ACACAGGCT------------------------------------GTCTGAGT----GGGCCATGTGCCCGGCAAATT--GAACAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCATTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAGCAACCTTCTCACGCATCCCGTGGTGTTGGTGGAAGCTCCCCGTGG-CCCTCCTGGTCGCGCG---GCAGCTCCGCTGAAATGCATAGGCAGGACAAGTTGGCCTC-AGCGAGCGACTTAGTAG-GTGTCGTCAAGACGTACAGCAGTCCCCAGCTAGGCCTCG---CCCTG--CACATCCAGATCC------CCCCCCTATCTGGTGTGATCTCTCTCTAGGTTGACCTCGTAACGGCGAGTGAAGCGGCAA-GAGCTCAAATTTGAAATCTGGCGCCTCCGGTGTCCGAGTTGTAATTTGGAGAGGCATCTTTGGGAGGGGCCCAGTCTAAGCTCCTTGGAACAGCACGTCATAGAGGGTGAGAATCCCGTCCTCGGCCGGATGTTCCCTCCCGTAAAAAGCGCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTCTGACAAACAACCGTCCTTCTGGGCGGTGCACTTGTCCTGGGCTGGGCCAGCATCAGTTGGGACGGCGGGACAAAGGCCTGGGGAATGTGACTCCTCTGAGGAGCGTTATAGCCCCGAGCGCAATGCCGCCCGACCCGACTGTGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTCCAAA-CCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCCCGTCAGGGGTGCACCATCGACCGATCCTGATGTCCTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG Tuber_depressum_KX904892 AAGGATCATTAAAAAG-------------------------------TGTAGGGGACCC-----GTGTGTTCGGTCCCCCACCCC-AAACCTCCCCGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCAGCCCTTGCTGCCCGTCC------------CACCATGCCCAGT------------------------------------GGCAGGA--------CGGAGGTGCCT-----------------------------------------------------------------------------------------------------------------------GGGGAAGGGCCCA-------------AA--CT-GAA----------------ACTCT-TGTGG-ACACAGGCT------------------------------------GTCTGAGT----GGGCCATGTGCCCGGCAAATT--GAACAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAGCAACCTTCTCACGCATCCCGTGGTGTTGGTGGAAGCTCCCCGTGG-CCCTCCTGGTCGCGCG---GCAGCTCCGCTGAAATGCATAGGCAGGACAAGTTGGCCTC-AGCGAGCGACTTAGTAG-GTGTCGTCAAGACGTACAGCAGTCCCCAGCTAGGCCTCG---CCCTG--CACATCCAGATCC------CCCCCCTATCTGGTGTGATCTCTCTCTAGGTTGACCTCGTAACGGCGAGTGAAGCGGCAA-GAGCTCAAATTTGAAATCTGGCGCCTCCGGTGTCCGAGTTGTAATTTGGAGAGGCATCTTTGGGAGGGGCCCAGTCTAAGCTCCTTGGAACAGCACGTCATAGAGGGTGAGAATCCCGTCCTCGGCCGGATGTTCCCTCCCGTAAAAAGCGCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTCTGACAAACAACCGTCCTTCTGGGCGGTGCACTTGTCCTGGGCTGGGCCAGCATCAGTTGGGACGGCGGGACAAAGGCCTGGGGAATGTGACTCCTCTGAGGAGCGTTATAGCCCCGAGCGCAATGCCGCCCGACCCGACTGTGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTCCAAA-CCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCCCGTCAGGGGTGCACCATCGACCGATCCTGATGTCCTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG Tuber_excavatum_FJ748899 ?????????????????-----------------------------?????????????-----???TGTGCGGTTCCCGGGTTC--?AACCCTCCGAGTACCCA-TCCATGTTGCTTCCCCAGGCCGGCAGTCCTTGCTGCCCGTCTC----------CCTCCATGTCTGGT------------------------------------CGTGGGA--------TGGAGGTGTCT-----------------------------------------------------------------------------------------------------------------------GGGGAGGGGTCCA-------------AA--CA-GAA----------------ACTCT-TGTGA-ACACAGGCA------------------------------------GTCTGAGCG---GGCCCATGTGCCCTGTGAATATTGAACAAGTTATAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAACAACCTCCTCACGCACCCCGTGGTATTGGTGGAAGCTAGCCGTGGGCCATCTCGGCTGCGGC---GCTGCTCTGCTGAAATGCATAAGCAGGACAACTGGGCCTC-AGCGAGTGACTTAGTAAAGTGTCATCAAGACCTAGAGCAGTCATCAGCTATGGCTTG---CCCTG--CCCACCCGGACAC---------TCCCATCCGGCGTGAACCCTT----GGTTGACCTCGTAACGGCGAGTGAAGCGGCAA-GAGCTCAAATTTGAAATCTGACGTCCACGGCGTCCGAGTTGTAATTTGGAGAGGCATCTTTGGGAGGGGCCCAGTCTAAGCTCCTTGGAACAGCACGTCACAGAGGGTGAGAATCCCGTTCTTGGCTGGATGTTCCCTCCCGGAAAAAGCGCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGAGTCAACCTCTGACAAACAACTGTCCTTCTGGGCGGTGCACTTGTCCGGGGTTGGGCCAGCATCAGTTGGGACGGCGGGACAAAGGCCTGGGGAATGTGACTCCCCTGAGGAGTGTTATAGCCCCGGGCGCAATGCCGCCCGACCCGACTGTGGACCGCGCTTCGGCTAGGATGCTGACGTAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTCCAAA-CCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCCCTTCTGGGGTGCACCATCGACCGATCCTGATGTCCTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAACGGTTCTGACGTGCAA-TCGATCGTCAAATTTGGGTATAGG Tuber_excavatum_HM485355 ????????????????-------------------------------????????????-----???????CGGTCCCCGAGCTCCAAACCCCTCCGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCAGCCATTGCTGCCTGTCT------------GACCATGCCCGGT------------------------------------CACAGGA--------CAGAGGTGCCT-----------------------------------------------------------------------------------------------------------------------GGGGAGGGGCTCA-------------AA--CA-GAA----------------ACTCT-AGTAC-ACACAGGCT------------------------------------GTCTGAGT----GGGCCATGTGCCCTGCAAGATT-GAACGAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAACAACCTTCTCACGGATCCCGTGGTAGTGGCGAAGCTCCACTGTGC-CCCTCTGGGCTGCGGT---GCAGCTCCGCTGAAATGCATAAGCAGGACAAGTGGGCCTC-AGCGAGTGACTTAGTAA-GTGTCTTGAAGACGTAGAGCAGTCAGCAGCTAGGCCATG---CCCTG--CCCACCAGGACTC------CTCCCCCATCTGGTGTGAACTCTT----GGTTGACCTCGTAACGGCGAGTGAAGCGGCAA-AAGCTCAAATTTGAAATCTGGCGCCTCCGGCGTCCGAGTTGTAATTTGGAGAGGCATCTTTGGGAGGGGCCCAGCCTAAGCTCCTTGGAACAGCACGTCACAGAGGGTGAGAATCCCGTTCTTGGCTGGATGTTCCCTCCCCTATAAAGCGCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCCCTGACAAACAACTGTCCTTCTGGGCGGTGCACTTGTCCTGGGCTGGGCCAGCATCAGTTGGGACGGTGGGATAAAGGCCTCGGGAATGTGACTCCGCTCAGGAGTGTTATAGCCCTTGGTGCAATGCCGCCCGACCCGACTGTGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTCCAAA-CCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAATCCCGTCAGGGATGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG Tuber_fulgens_HM485358 AAGGATCATTAAAAAA------------------------------TGGTTGGGACCCC-----CCACATAAGGTCCCCGAGCCC-AAACCTCCCTGAGTACCAA-TCCATGTTGCTTCCCCAGGCCAGCAGCCATTGCTGCCCGTCC------------GGCCGTTCCTGGG-----------------------------------TCACAGGA--------CGGAGGTGCCT-----------------------------------------------------------------------------------------------------------------------GGGGAGGGGTCCA-------------AAAGCA-GAA----------------ACTCT-GGTGC-ACACATGCT------------------------------------GTCTGAGTTGGTGGGCCATGTGCCCGGTTAATT--GAATTATTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAGCAACCATCTCACGGATCCCGTGGTCTTGGTGGAAGCTTCCTGCGG-CCCCTTTGGCTGCAGC---AAAGCTCCGCTGAAATGTATAAGCAGGACAAACAGGCCCC-GGCGAGTGACTTAGTAA-GTGTCGTGAAGACGTAGACCAGTCAGCAGCCAGGCCTTG---CCCTG--TTCACCCAGACAC------CCCCCCCATCTGGTGTGATCTCTT----GGTTGACCTCGTAACGGCGAGTGAAGCGGCAAAGAGCTCAAATTTGAAATCTGATGCCTACGGTGTCCGAGTTGTAATTTGGAGAGGCATCTTTGGGATGGGCCCAGCCTAAGCGCCTTGGAACAGCGTGTCATAGAGGGTGAGAATCCCGTTCTCGGCTGGATGTTCCCTCCCGTAAAAAGCGCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTCTGACAAACAACTGTCCTTCTGGGCGGTGCACTTGTCTTGGGCTGGGCCAGCATCAGTTGGGACGGCGGGACAAAGGCCTGGGGAATGTGACTCCCCTGAGGAGTGTTATAGCCCTGGGTGCAATGCTGCCCGACCTGACTGTGGACCGCGCTTCGGCTAGGATGCTGGCTTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTCCAAA-CCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCCCGTCAGGGGCGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG Tuber_iranicum_4939_MN854634 AAGGATCATTAAACAATGTGTGGACTT-GCATATCCGCTCCCCGACCTGTGGGGAGGTCTAAGTGCATGTGCAGTCCCCGATCTT-AAACCTCTCTGAGTACCTA-TCCATGTTGCTTTCCCAGGCCAGCAGCCATTGCTGCCTGTCCC----------CGACCATGTGTGGT------------------------------------TGCGGGA--------TGGAGGTGCCT-----------------------------------------------------------------------------------------------------------------------GGGGAAGGGCCCG-------------AA--CA-GAA----------------ACTCTTGGTGC-ACACATGCT------------------------------------GTCTGAGT----GGGCCATGTGCCCAGCATATTTTGAACAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAGAAACCTCCTCACGGATCCCGTGGTGTTGGTGGAAGCTCTCTGTAG-CCCCGCTGGCTGCGTC---ACTGCTCCGCCGAAATGCATAACCAGGACAAGTGTGCCTC-AGCGATTGACTTAGTAA-GTGTCGTGAAGACGTAGAGCAGTCAGCAGCTAGGACCTAGTACCCTGTACACATCCAGACCC------CCTCCGTATCTGGTGTGATCTCTC----GGTTGACCTCGTAACGGCGAGTGAAGCGGCAA-GAGCTCAAATTTGAAATCTGGCGTCTCCAGCGTCCGAGTTGTAATTTGGAGAGGCATCTTTGGGAGGGGCCCAGTCTAAGCTCCTTGGAACAGCACGTCATAGAGGGTGAGAATCCCGTTCTTGGCTGGATGTTCCCTCCTGTAAAAAGCGCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTCTGACAAACAACTGTCCTTCTGGGCGGTGCACTTGTCCTGGGCTGGGCCAGCATCAGTTGGGATGGCGGGATAAAGGCCTGGGGAATGTGACTCCTCTGAGGAGTGTTATAGCCCTGAGTGCAATGCCGTCCGATCCGACTGTGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTCTAAAACCCTCATGCGTAATGAAAGTGAACGGAGGTGGGAATCCCGTCAGGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG Tuber_iranicum_4965_MN854635 AAGGATCATTAAACAATGTGTGGACTTTGCATATCCGCTCCCCGACCTGTGGGGAGGTCTAAGTGCATGTGCAGTCCCCGATCTT-AAACCTCTCTGAGTACCTA-TCCATGTTGCTTTCCCAGGCCAGCAGCCATTGCTGCCTGTCCC----------CGACCATGTGTGGT------------------------------------TGCGGGA--------TGGAGGTGCCT-----------------------------------------------------------------------------------------------------------------------GGGGAAGGGCCCG-------------AA--CA-GAA----------------ACTCTTGGTGC-ACACATGCT------------------------------------GTCTGAGT----GGGCCATGTGCCCAGCATATTTTGAACAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAGAAACCTCCTCACGGATCCCGTGGTGTTGGTGGAAGCTCTCTGTAG-CCCCGCTGGCTGCGTC---ACTGCTCCGCCGAAATGCATAACCAGGACAAGTGTGCCTC-AGCGATTGACTTAGTAA-GTGTCGTGAAGACGTAGAGCAGTCAGCAGCTAGGACCTAGTACCCTGTACACATCCAGACCC------CCTCCGTATCTGGTGTGATCTCTC----GGTTGACCTCGTAACGGCGAGTGAAGCGGCAA-GAGCTCAAATTTGAAATCTGGCGTCTCCAGCGTCCGAGTTGTAATTTGGAGAGGCATCTTTGGGAGGGGCCCAGTCTAAGCTCCTTGGAACAGCACGTCATAGAGGGTGAGAATCCCGTTCTTGGCTGGATGTTCCCTCCTGTAAAAAGCGCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTCTGACAAACAACTGTCCTTCTGGGCGGTGCACTTGTCCTGGGCTGGGCCAGCATCAGTTGGGATGGCGGGATAAAGGCCTGGGGAATGTGACTCCTCTGAGGAGTGTTATAGCCCTGAGTGCAATGCCGTCCGATCCGACTGTGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTCTAAAACCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAATCCCGTCAGGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG Tuber_neoexcavatum_KY013625 AAGGATCATTAAACAG-------------------------------TGTGGGGGACCC-----GCGTGTCTGGTCCCCGACCTC-AAACCTCCCCGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCAGCCATTGCCGCCCGTCC------------GACCATGCCCAGTGG---------------------------------TGGCAGGA--------CGGAGGTGCCT-----------------------------------------------------------------------------------------------------------------------GGGGAAGGGCCCA-------------AA--CAAGAA----------------ACTCT-GGTGC-ACACAGGCT------------------------------------GTCTGAGT----GGGCCATGTGCCCGGCAAATT--GAACAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAGCAACCTTCTCACGCATCCCGTGGTGTTGGTGGAAGCTCCCTGTGG-CCAGCAGGGCCACGTG---ACAGCTCCGCCGAAATGCATAAGCAGGACAAGTGGGCCTC-AGCGAGCGACTTAGTAA-GTGTCATGAAGACGTACAGCAGTCTGCAGCTAGGCCTCG---CCCTG--CAAACCCAGATCC------CCCCCCGATCTGGTATGATCCTCCT--AGGTTGACCTCGTAACGGCGAGTGAAGCGGCAT-GAGCTCAAATTTGAAATCTGGCGCCTCCGGCGTCCGAGTTGTAATTTGGAGAGGCATCTTTGGGAGGGGCCCAGCCTAAGCTCCTTGGAACAGCACGTCACAGAGGGTGAGAATCCCGTTCTCGGCCGGATGTTCCCTCCCGTAAAAAGCGCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTCTGACAAACAACCGTCCTTCTGGGCGGTGCACTTGTCCTGGGCTGGGCCAGCATCAGTTGGGACGGCGGGATAAAGGCCTGGGGAATGTGACTCCTCTGAGGAGCGTTATAGCCCCGGGTGCAATGCCGCCCGACCCGACTGTGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCTCCAAA-CCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCCCGTCAGGGGTGCACCATCGACCGATCCTGATGTCCTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG Tuber_neoexcavatum_KY013626 AAGGATCATTAAACAG-------------------------------TGTGGGGGACCC-----GCGTGTCTGGTCCCCGACCTC-AAACCTCCCCGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCAGCCATTGCCGCCCGTCC------------GACCATGCCCAGTGG---------------------------------TGGCAGGA--------CGGAGGTGCCT-----------------------------------------------------------------------------------------------------------------------GGGGAAGGGCCCA-------------AA--CAAGAA----------------ACTCT-GGTGC-ACACAGGCT------------------------------------GTCTGAGT----GGGCCATGTGCCCGGCAAATT--GAACAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAGCAACCTTCTCACGCATCCCGTGGTGTTGGTGGAAGCTCCCTGTGG-CCAGCAGGGCCACGTG---ACAGCTCCGCCGAAATGCATAAGCAGGACAAGTGGGCCTC-AGCGAGCGACTTAGTAA-GTGTCATGAAGACGTACAGCAGTCTGCAGCTAGGCCTCG---CCCTG--CAAACCCAGATCC------CCCCCCGATCTGGTATGATCCTCCT--AGGTTGACCTCGTAACGGCGAGTGAAGCGGCAT-GAGCTCAAATTTGAAATCTGGCGCCTCCGGCGTCCGAGTTGTAATTTGGAGAGGCATCTTTGGGAGGGGCCCAGCCTAAGCTCCTTGGAACAGCACGTCACAGAGGGTGAGAATCCCGTTCTCGGCCGGATGTTCCCTCCCGTAAAAAGCGCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTCTGACAAACAACCGTCCTTCTGGGCGGTGCACTTGTCCTGGGCTGGGCCAGCATCAGTTGGGACGGCGGGATAAAGGCCTGGGGAATGTGACTCCTCTGAGGAGCGTTATAGCCCCGGGTGCAATGCCGCCCGACCCGACTGTGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCTCCAAA-CCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCCCGTCAGGGGTGCACCATCGACCGATCCTGATGTCCTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG Tuber_neoexcavatum_KY013633 AAGGATCATTAAACAG-------------------------------TGTGGGGGACCC-----GCGTGTCTGGTCCCCGACCTC-AAACCTCCCCGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCAGCCATTGCCGCCCGTCC------------GACCATGCCCAGTGG---------------------------------TGGCAGGA--------CGGAGGTGCCT-----------------------------------------------------------------------------------------------------------------------GGGGAAGGGCCCA-------------AA--CAAGAA----------------ACTCT-GGTGC-ACACAGGCT------------------------------------GTCTGAGT----GGGCCATGTGCCCGGCAAATT--GAACAAGTAAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAGCAACCTTCTCACGCATCCCGTGGTGTTGGTGGAAGCTCCCCGTGG-CCAGCAGGGCCACGTG---ACAGCTCCGCCGAAATGCATAAGCAGGACAAGTGGGCCTC-AGCGAGCGACTTAGTAA-GTGTCATGAAGACGTACAGCAGTCTGCAGCTAGGCCTCG---CCCTG--CAAACCCAGATCC------CCCCCCGATCTGGTATGATCCTCCT--AGGTTGACCTCGTAACGGCGAGTGAAGCGGCAT-GAGCTCAAATTTGAAATCTGGCGCCTCCGGCGTCCGAGTTGTAATTTGGAGAGGCATCTTTGGGAGGGGCCCAGCCTAAGCTCCTTGGAACAGCACGTCACAGAGGGTGAGAATCCCGTTCTCGGCCGGATGTTCCCTCCCGTAAAAAGCGCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTCTGACAAACAACCGTCCTTCTGGGCGGTGCACTTGTCCTGGGCTGGGCCAGCATCAGTTGGGACGGCGGGATAAAGGCCTGGGGAATGTGACTCCTCTGAGGAGCGTTATAGCCCCGGGTGCAATGCCGCCCGACCCGACTGTGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCTCCAAA-CCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCCTGTCAGGGGTGCACCATCGACCGATCCTGATGTCCTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG Tuber_neoexcavatum_KY013634 AAGGATCATTAAACAG-------------------------------TGTGGGGGACCC-----GCGTGTCTGGTCCCCGACCTC-AAACCTCCCCGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCAGCCATTGCCGCCCGTCC------------GACCATGCCCAGTGG---------------------------------TGGCAGGA--------CGGAGGTGCCT-----------------------------------------------------------------------------------------------------------------------GGGGAAGGGCCCA-------------AA--CAAGAA----------------ACTCT-GGTGC-ACACAGGCT------------------------------------GTCTGAGT----GGGCCATGTGCCCGGCAAATT--GAACAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAGCAACCTTCTCACGCATCCCGTGGTGTTGGTGGAAGCTCCCTGTGG-CCAGCAGGGCCACGTG---ACAGCTCCGCCGAAATGCATAAGCAGGACAAGTGGGCCTC-AGCGAGCGACTTAGTAA-GTGTCATGAAGACGTACAGCAGTCTGCAGCTAGGCCTCG---CCCTG--CAAACCCAGATCC------CCCCCCGATCTGGTATGATCCTCCT--AGGTTGACCTCGTAACGGCGAGTGAAGCGGCAT-GAGCTCAAATTTGAAATCTGGCGCCTCCGGCGTCCGAGTTGTAATTTGGAGAGGCATCTTTGGGAGGGGCCCAGCCTAAGCTCCTTGGAACAGCACGTCACAGAGGGTGAGAATCCCGTTCTCGGCCGGATGTTCCCTCCCGTAAAAAGCGCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTCTGACAAACAACCGTCCTTCTGGGCGGTGCACTTGTCCTGGGCTGGGCCAGCATCAGTTGGGACGGCGGGATAAAGGCCTGGGGAATGTGACTCCTCTGAGGAGCGTTATAGCCCCGGGTGCAATGCCGCCCGACCCGACTGTGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCTCCAAA-CCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCCCGTCAGGGGTGCACCATCGACCGATCCTGATGTCCTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG Tuber_pseudoexcavatum_MG871289 AAGGATCATTATTGATA------------------------------TCTGGGATATCT-----TTACA---GATTCCCAATTAC-AAACCTCTCTGGGTTTATACTCCATGTTGCTTTCACAAGTTAAGAGACATTCTTGCTTGCCAGTTGTAGCTGTCATTCATACTTGGTCAACTGTGTTACTGTTATTTTTCTTTCTCACTAGCCAGCAGGTGTAGTTCCCTGAGGTTTCTCCTTATTTGCTTTCCCATAACCCATCTCTGCTAGCAGTTTGCAACAAGCTGGTAGTTATGTTTGTCATGGCGAACCATATTTGCATTGCCTCAGCCCCTATCTGTTCGCTGACCGGTTAGGATAGCAGATCATTACATTGTAACCAATTCATGTATGCTACTACTGCTTGCGCTTT-AGTACTATACAGGCACTTGTGAAAGGTCTCAACCAAGCTTTAAATTATGTGGTCTGACTT----GGCCAAGTGCCATATCTCTT------AAGTGAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGCTCGAGCGTCACAGAAAACCCCATCACAGTTCCTGTGGTCTTGGTATGAGTGGGTTGTTAGTATGTGGAGACATGCTTATAACACTCTACCGAAATTTATAGACAGGATA-CCAGATATG-GGCAATAGACTTTGTAA-ATGTCCACAGGATATATATCAGTCACGTGTCATGTTTGG--TCCCTG-ATATTATTGGACTC-----------CTATTCTATACAAACATTG----GGTTGACCTCGTAACGGCGAGTGAAGCGGCAA-AAGCTCAAATTTGAAATCTGACACCTCTGGTGTTCGAGTTGTAATTTGGAGAGGCAACTTCAGGTAGAATCCAGCCTATGTTCCTTGGAACAGGAGGTCATAGAGGGTGAGAATCCCGTTTGTGGCTGGATGATTCTACTAGTATGTAGTGCCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTTTGGCAAACAATAGTCCTTTAGGATTGTGCACTTGTCTTGGGCTGGGCCAGCATCAGTTAGGATGGTAGGAGAAAGGTTGGGAAAATGTGACTCCAATTTGGAGTGTTATAGATCCCAGCGTCATGCTATCTATCCTGACTGTGGACCGCGCTTTGGCTAGGATGCTGGCGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTACACA-CCCTTACGCGTAATGAAAGTAAACGGAGGTGGGAATCCTGTAAAGGTTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG Tuber_verrucosivolvum_KX904887 AAGGATCATTAAAAAAA---------------------------AATCATCGGGACCCT-----CCACATAGGGTCCCCAAGCTC-AAACCTCCCCGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCAGCCATTGCTGCCCGTCC------------AACCACGTC-AGG-----------------------------------TGACAGGA--------CGGAGGTGTCT-----------------------------------------------------------------------------------------------------------------------GGGGAGGGGCCCA-------------AA--CA-GAA----------------ACTCT-GGTAT-ATACAGGCT------------------------------------GTCTGAGTTGGTGGGCCATGTGCCCGGTCAATT--GAACAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAGCAACCCTCTCACGCATCCTGTGGTATTGGTGGAAGCTTCCCGTGG-CCCCTTGGGCTACGCC---ACAGCTCCGCTGAAATGCATAAGCAGGACAAACAGGCCCCCGGTGAGTGACTTAGTAA-CTGTCATGAAGACGTAGACCAGTCACCAGCCAGGCCTTG---CCCTG--CCCACCCAGAT-C------TCCCCCAATCTGGTGTGATGTCTT----GGTTGACCTCGTAACGGCGAGTGAAGCGGCAA-GAGCTCAAATTTGAAATCTGACGCCTCCGGTGTCCGAGTTGTAATTTGGAGAGGCATCTTTGTGAGGGGCCCAGCCTAAGCGCCTTGGAACAGCGCGTCACAGAGGGTGAGAATCCCGTTCTTGGCTGGATGTCCCCTCCCATAAAAAGCGCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCCGTGACAAACAACCGTCCTCCGGGTCGGTGCTCTTGTTCTGGGCTGGGCCAGCATCAGTTGGGACGGCGGGACAAAGGCCTGGGGAATGTGACTCCTCTGAGGAGTGTTATAGCCCTGGGTGCAATGCTGCCTGACCCGACTGTGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTCCAAA-CCCTCACGCGTAATGAAAGTGAATGGAGGTGGGAACCCCGTCAGGGGCGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG Tuber_verrucosivolvum_KX904888 AAGGATCATTAAAAAAA---------------------------AATCATCGGGACCCT-----CCACATAGGGTCCCCAAGCTC-AAACCTCCCCGAGTACCCA-TCCATGTTGCTTTCCCAGGCCAGCAGCCATTGCTGCCCGTCC------------AACCACGTC-AGG-----------------------------------TGACAGGA--------CGGAGGTGTCT-----------------------------------------------------------------------------------------------------------------------GGGGAGGGGCCCA-------------AA--CA-GAA----------------ACTCT-GGTAT-ATACAGGCT------------------------------------GTCTGAGTTGGTGGGCCATGTGCCCGGTCAATT--GAACAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAGCAACCCTCTCACGCATCCTGTGGTATTGGTGGAAGCTTCCCGTGG-CCCCTTGGGCTACGCC---ACAGCTCCGCTGAAATGCATAAGCAGGACAAACAGGCCCCCGGTGAGTGACTTAGTAA-CTGTCATGAAGACGTAGACCAGTCACCAGCCAGGCCTTG---CCCTG--CCCACCCAGAT-C------TCCCCCAATCTGGTGTGATGTCTT----GGTTGACCTCGTAACGGCGAGTGAAGCGGCAA-GAGCTCAAATTTGAAATCTGACGCCTCCGGTGTCCGAGTTGTAATTTGGAGAGGCATCTTTGTGAGGGGCCCAGCCTAAGCGCCTTGGAACAGCGCGTCACAGAGGGTGAGAATCCCGTTCTTGGCTGGATGTCCCCTCCCATAAAAAGCGCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCCGTGACAAACAACCGTCCTCCGGGTCGGTGCTCTTGTTCTGGGCTGGGCCAGCATCAGTTGGGACGGCGGGACAAAGGCCTGGGGAATGTGACTCCTCTGAGGAGTGTTATAGCCCTGGGTGCAATGCTGCCTGACCCGACTGTGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTCCAAA-CCCTCACGCGTAATGAAAGTGAATGGAGGTGGGAACCCCGTCAGGGGCGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M54829] TITLE Tuber_LSU_Alignment; LINK TAXA = Taxa1; DIMENSIONS NCHAR=823; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Tuber_badium_KY013652 GTAACGGCGAGTGAAGCGGCAA-GAGCTCAAATTTGAAATCTGGCGCCTCCGGTGTCCGAGTTGTAATTTGGAGAGGCATCTTTGGGAGGGGCCCAGTCTAAGCTCCTTGGAACAGCACGTCATAGAGGGTGAGAATCCCGTCCTCGGCCGGATGTTCCCTCCCGTAAAAAGCGCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTCTGACAAACAACCGTCCTTCTGGGCGGTGCACTTGTCCTGGGCTGGGCCAGCATCAGTTGGGACGGCGGGACAAAGGCCTGGGGAATGTGACTCCTCTGCGGAGCGTTATAGCCCCGAGCGCAATGCCGCCCGACCCGACTGTGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTCCAAA-CCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCCCGTCAGGGGTGCACCATCGACCGATCCTGATGTCCTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG Tuber_depressum_KY013653 GTAACGGCGAGTGAAGCGGCAA-GAGCTCAAATTTGAAATCTGGCGCCTCCGGTGTCCGAGTTGTAATTTGGAGAGGCATCTTTGGGAGGGGCCCAGTCTAAGCTCCTTGGAACAGCACGTCATAGAGGGTGAGAATCCCGTCCTCGGCCGGATGTTCCCTCCCGTAAAAAGCGCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTCTGACAAACAACCGTCCTTCTGGGCGGTGCACTTGTCCTGGGCTGGGCCAGCATCAGTTGGGACGGCGGGACAAAGGCCTGGGGAATGTGACTCCTCTGAGGAGCGTTATAGCCCCGAGCGCAATGCCGCCCGACCCGACTGTGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTCCAAA-CCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCCCGTCAGGGGTGCACCATCGACCGATCCTGATGTCCTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG Tuber_depressum_KY013654 GTAACGGCGAGTGAAGCGGCAA-GAGCTCAAATTTGAAATCTGGCGCCTCCGGTGTCCGAGTTGTAATTTGGAGAGGCATCTTTGGGAGGGGCCCAGTCTAAGCTCCTTGGAACAGCACGTCATAGAGGGTGAGAATCCCGTCCTCGGCCGGATGTTCCCTCCCGTAAAAAGCGCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTCTGACAAACAACCGTCCTTCTGGGCGGTGCACTTGTCCTGGGCTGGGCCAGCATCAGTTGGGACGGCGGGACAAAGGCCTGGGGAATGTGACTCCTCTGAGGAGCGTTATAGCCCCGAGCGCAATGCCGCCCGACCCGACTGTGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTCCAAA-CCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCCCGTCAGGGGTGCACCATCGACCGATCCTGATGTCCTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG Tuber_depressum_KY013655 GTAACGGCGAGTGAAGCGGCAA-GAGCTCAAATTTGAAATCTGGCGCCTCCGGTGTCCGAGTTGTAATTTGGAGAGGCATCTTTGGGAGGGGCCCAGTCTAAGCTCCTTGGAACAGCACGTCATAGAGGGTGAGAATCCCGTCCTCGGCCGGATGTTCCCTCCCGTAAAAAGCGCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTCTGACAAACAACCGTCCTTCTGGGCGGTGCACTTGTCCTGGGCTGGGCCAGCATCAGTTGGGACGGCGGGACAAAGGCCTGGGGAATGTGACTCCTCTGAGGAGCGTTATAGCCCCGAGCGCAATGCCGCCCGACCCGACTGTGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTCCAAA-CCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCCCGTCAGGGGTGCACCATCGACCGATCCTGATGTCCTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG Tuber_excavatum_DQ191677 GTAACGGCGAGTGAAGCGGCAA-AAGCTCAAATTTGAAATCTGGCGCCTCCGGCGTCCGAGTTGTAATTTGGAGAGGCATCTTTGGGAGGGGCCCAGCCTAAGCTCCTTGGAACAGCACGTCACAGAGGGTGAGAATCCCGTTCTTGGCTGGATGTTCCCTCCCCTATAAAGCGCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCCCTGACAAACAACTGTCCTTCTGGGCGGTGCACTTGTCCTGGGCTGGGCCAGCATCAGTTGGGACGGTGGGATAAAGGCCTCGGGAATGTGACTCCGTTCAGGAGTGTTATAGCCCTGGGTGCAATGCCGCCCGACCCGACTGTGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTCCAAA-CCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAATCCCGTCAGGGATGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG Tuber_excavatum_FJ809824 GTAACGGCGAGTGAAGCGGCAA-AAGCTCAAATTTGAAATCTGGCGCCTCCGGCGTCCGAGTTGTAATTTGGAGAGGCATCTTTGGGAGGGGCCCAGCCTAAGCTCCTTGGAACAGCACGTCACAGAGGGTGAGAATCCCGTTCTTGGCTGGATGTTCCCTCCCCTATAAAGCGCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCCCTGACAAACAACTGTCCTTCTGGGCGGTGCACTTGTCCTGGGCTGGGCCAGCATCAGTTGGGACGGTGGGATAAAGGCCTCGGGAATGTGACTCCGCTCAGGAGTGTTATAGCCCTTGGTGCAATGCCGCCCGACCCGACTGTGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTCCAAA-CCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAATCCCGTCAGGGATGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG Tuber_excavatum_FJ809825 GTAACGGCGAGTGAAGCGGCAA-GAGCTCAAATTTGAAATCTGACGTCCACGGCGTCCGAGTTGTAATTTGGAGAGGCATCTTTGGGAGGGGCCCAGTCTAAGCTCCTTGGAACAGCACGTCACAGAGGGTGAGAATCCCGTTCTTGGCTGGATGTTCCCTCCCGGAAAAAGCGCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGAGTCAACCTCTGACAAACAACTGTCCTTCTGGGCGGTGCACTTGTCCGGGGTTGGGCCAGCATCAGTTGGGACGGCGGGACAAAGGCCTGGGGAATGTGACTCCCCTGAGGAGTGTTATAGCCCCGGGCGCAATGCCGCCCGACCCGACTGTGGACCGCGCTTCGGCTAGGATGCTGACGTAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTCCAAA-CCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCCCTTCTGGGGTGCACCATCGACCGATCCTGATGTCCTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAACGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG Tuber_excavatum_GU979140 GTAACGGCGAGTGAAGCGGCAA-GAGCTCAAATTTGAAATCTGGCGCCTCCGGTGTCCGAGTTGTAATTTGGAGAGGCATCTTTGGGAGGGGCCCAGTCTAAGCTCCTTGGAACAGCACGTCATAGAGGGTGAGAATCCCGTCCTCGGCCGGATGTTCCCTCCCGTAAAAAGCGCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTCTGACAAACAACCGTCCTTCTGGGCGGTGCACTTGTCCTGGGCTGGGCCAGCATCAGTTGGGACGGCGGGACAAAGGCCTGGGGAATGTGACTCCTCTGAGGAGCGTTATAGCCCCGAGCGCAATGCCGCCCGACCCGACTGTGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTCCAAA-CCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCCCGTCAGGGGTGCACCATCGACCGATCCTGATGTCCTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG Tuber_excavatum_JQ925689 GTAACGGCGAGTGAAGCGGCAA-GAGCTCAAATTTGAAATCTGACGTCCACGGCGTCCGAGTTGTAATTTGGAGAGGCATCTTTGGGAGGGGCCCAGTCTAAGCTCCTTGGAACAGCACGTCACAGAGGGTGAGAATCCCGTTCTTGGCTGGATGTTCCCTCCCGGAAAAAGCGCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGAGTCAACCTCTGACAAACAACTGTCCTTCTGGGCGGTGCACTTGTCCGGGGTTGGGCCAGCATCAGTTGGGACGGCGGGACAAAGGCCTGGGGAATGTGACTCCCCTGAGGAGTGTTATAGCCCCGGGCGCAATGCCGCCCGACCCGACTGTGGACCGCGCTTCGGCTAGGATGCTGACGTAATGGTCTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTCCAAA-CCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCCCTTCTGGGGTGCACCATCGACCGATCCTGATGTCCTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAACGGTTCTGACGTGCAA-TCGATCGTCAAATTTGGGTATAGG Tuber_excavatum_JQ925690 GTAACGGCGAGTGAAGCGGCAA-AAGCTCAAATTTGAAATCTGGCGCCTCCGGCGTCCGAGTTGTAATTTGGAGAGGCATCTTTGGGAGGGGCCCAGCCTAAGCTCCTTGGAACAGCACGTCACAGAGGGTGAGAATCCCGTTCTTGGCTGGATGTTCCCTCCCCTATAAAGCGCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCCCTGACAAACAACTGTCCTTCTGGGCGGTGCACTTGTCCTGGGCTGGGCCAGCATCAGTTGGGACGGTGGGATAAAGGCCTCGGGAATGTGACTCCGCTCAGGAGTGTTATAGCCCTTGGTGCAATGCCGCCCGACCCGACTGTGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTCCAAA-CCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAATCCCGTCAGGGATGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG Tuber_fulgens_JQ925691 GTAACGGCGAGTGAAGCGGCAAAGAGCTCAAATTTGAAATCTGATGCCTACGGTGTCCGAGTTGTAATTTGGAGAGGCATCTTTGGGATGGGCCCAGCCTAAGCGCCTTGGAACAGCGTGTCATAGAGGGTGAGAATCCCGTTCTCGGCTGGATGTTCCCTCCCGTAAAAAGCGCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTCTGACAAACAACTGTCCTTCTGGGCGGTGCACTTGTCTTGGGCTGGGCCAGCATCAGTTGGGACGGCGGGACAAAGGCCTGGGGAATGTGACTCCCCTGAGGAGTGTTATAGCCCTGGGTGCAATGCTGCCCGACCTGACTGTGGACCGCGCTTCGGCTAGGATGCTGGCTTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTCCAAA-CCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCCCGTCAGGGGCGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG Tuber_iranicum_4939_MN856154 GTAACGGCGAGTGAAGCGGCAA-GAGCTCAAATTTGAAATCTGGCGTCTCCAGCGTCCGAGTTGTAATTTGGAGAGGCATCTTTGGGAGGGGCCCAGTCTAAGCTCCTTGGAACAGCACGTCATAGAGGGTGAGAATCCCGTTCTTGGCTGGATGTTCCCTCCTGTAAAAAGCGCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTCTGACAAACAACTGTCCTTCTGGGCGGTGCACTTGTCCTGGGCTGGGCCAGCATCAGTTGGGATGGCGGGATAAAGGCCTGGGGAATGTGACTCCTCTGAGGAGTGTTATAGCCCTGAGTGCAATGCCGTCCGATCCGACTGTGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTCTAAAACCCTCATGCGTAATGAAAGTGAACGGAGGTGGGAATCCCGTCAGGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG Tuber_iranicum_4965_MN856155 GTAACGGCGAGTGAAGCGGCAA-GAGCTCAAATTTGAAATCTGGCGTCTCCAGCGTCCGAGTTGTAATTTGGAGAGGCATCTTTGGGAGGGGCCCAGTCTAAGCTCCTTGGAACAGCACGTCATAGAGGGTGAGAATCCCGTTCTTGGCTGGATGTTCCCTCCTGTAAAAAGCGCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTCTGACAAACAACTGTCCTTCTGGGCGGTGCACTTGTCCTGGGCTGGGCCAGCATCAGTTGGGATGGCGGGATAAAGGCCTGGGGAATGTGACTCCTCTGAGGAGTGTTATAGCCCTGAGTGCAATGCCGTCCGATCCGACTGTGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTCTAAAACCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAATCCCGTCAGGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG Tuber_neoexcavatum_KY013641 GTAACGGCGAGTGAAGCGGCAT-GAGCTCAAATTTGAAATCTGGCGCCTCCGGCGTCCGAGTTGTAATTTGGAGAGGCATCTTTGGGAGGGGCCCAGCCTAAGCTCCTTGGAACAGCACGTCACAGAGGGTGAGAATCCCGTTCTCGGCCGGATGTTCCCTCCCGTAAAAAGCGCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTCTGACAAACAACCGTCCTTCTGGGCGGTGCACTTGTCCTGGGCTGGGCCAGCATCAGTTGGGACGGCGGGATAAAGGCCTGGGGAATGTGACTCCTCTGAGGAGCGTTATAGCCCCGGGTGCAATGCCGCCCGACCCGACTGTGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCTCCAAA-CCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCCCGTCAGGGGTGCACCATCGACCGATCCTGATGTCCTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG Tuber_neoexcavatum_KY013642 GTAACGGCGAGTGAAGCGGCAT-GAGCTCAAATTTGAAATCTGGCGCCTCCGGCGTCCGAGTTGTAATTTGGAGAGGCATCTTTGGGAGGGGCCCAGCCTAAGCTCCTTGGAACAGCACGTCACAGAGGGTGAGAATCCCGTTCTCGGCCGGATGTTCCCTCCCGTAAAAAGCGCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTCTGACAAACAACCGTCCTTCTGGGCGGTGCACTTGTCCTGGGCTGGGCCAGCATCAGTTGGGACGGCGGGATAAAGGCCTGGGGAATGTGACTCCTCTGAGGAGCGTTATAGCCCCGGGTGCAATGCCGCCCGACCCGACTGTGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCTCCAAA-CCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCCCGTCAGGGGTGCACCATCGACCGATCCTGATGTCCTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG Tuber_neoexcavatum_KY013644 GTAACGGCGAGTGAAGCGGCAT-GAGCTCAAATTTGAAATCTGGCGCCTCCGGCGTCCGAGTTGTAATTTGGAGAGGCATCTTTGGGAGGGGCCCAGCCTAAGCTCCTTGGAACAGCACGTCACAGAGGGTGAGAATCCCGTTCTCGGCCGGATGTTCCCTCCCGTAAAAAGCGCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCCCTGACAAACAACCGTCCTTCTGGGCGGTGCACTTGTCCTGGGCTGGGCCAGCATCAGTTGGGACGGCGGGATAAAGGCCTGGGGAATGTGACTCCTCTGAGGAGCGTTATAGCCCCGGGTGCAATGCCGCCCGACGCGACTGTGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCTCCAAA-CCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCCCGTCAGGGGTGCACCATCGACCGATCCTGATGTCCTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG Tuber_neoexcavatum_KY013645 GTAACGGCGAGTGAAGCGGCAT-GAGCTCAAATTTGAAATCTGGCGCCTCCGGCGTCCGAGTTGTAATTTGGAGAGGCATCTTTGGGAGGGGCCCAGCCTAAGCTCCTTGGAACAGCACGTCACAGAGGGTGAGAATCCCGTTCTCGGCCGGATGTTCCCTCCCGTAAAAAGCGCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTCTGACAAACAACCGTCCTTCTGGGCGGTGCACTTGTCCTGGGCTGGGCCAGCATCAGTTGGGACGGCGGGATAAAGGCCTGGGGAATGTGACTCCTCTGAGGAGCGTTATAGCCCCGGGTGCAATGCCGCCCGACCCGACTGTGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCTCCAAA-CCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCCTGTCAGGGGTGCACCATCGACCGATCCTGATGTCCTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG Tuber_neoexcavatum_KY013647 GTAACGGCGAGTGAAGCGGCAT-GAGCTCAAATTTGAAATCTGGCGCCTCCGGCGTCCGAGTTGTAATTTGGAGAGGCATCTTTGGGAGGGGCCCAGCCTAAGCTCCTTGGAACAGCACGTCACAGAGGGTGAGAATCCCGTTCTCGGCCGGATGTTCCCTCCCGTAAAAAGCGCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTCTGACAAACAACCGTCCTTCTGGGCGGTGCACTTGTCCTGGGCTGGGCCAGCATCAGTTGGGACGGCGGGATAAAGGCCTGGGGAATGTGACTCCTCTGAGGAGCGTTATAGCCCCGGGTGCAATGCCGCCCGACCCGACTGTGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCTCCAAA-CCCTCACGCGTAATGAAAGTGAACGGAGGTGGGAACCCCGTCAGGGGTGCACCATCGACCGATCCTGATGTCCTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG Tuber_pseudoexcavatum_MG871325 GTAACGGCGAGTGAAGCGGCAA-AAGCTCAAATTTGAAATCTGACACCTCTGGTGTTCGAGTTGTAATTTGGAGAGGCAACTTCAGGTAGAATCCAGCCTATGTTCCTTGGAACAGGAGGTCATAGAGGGTGAGAATCCCGTTTGTGGCTGGATGATTCTACTAGTATGTAGTGCCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCTTTGGCAAACAATAGTCCTTTAGGATTGTGCACTTGTCTTGGGCTGGGCCAGCATCAGTTAGGATGGTAGGAGAAAGGTTGGGAAAATGTGACTCCAATTTGGAGTGTTATAGATCCCAGCGTCATGCTATCTATCCTGACTGTGGACCGCGCTTTGGCTAGGATGCTGGCGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTACACA-CCCTTACGCGTAATGAAAGTAAACGGAGGTGGGAATCCTGTAAAGGTTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG Tuber_verrucosivolvum_KY013650 GTAACGGCGAGTGAAGCGGCAA-GAGCTCAAATTTGAAATCTGACGCCTCCGGTGTCCGAGTTGTAATTTGGAGAGGCATCTTTGTGAGGGGCCCAGCCTAAGCGCCTTGGAACAGCGCGTCACAGAGGGTGAGAATCCCGTTCTTGGCTGGATGTCCCCTCCCATAAAAAGCGCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCCGTGACAAACAACCGTCCTCCGGGTCGGTGCTCTTGTTCTGGGCTGGGCCAGCATCAGTTGGGACGGCGGGACAAAGGCCTGGGGAATGTGACTCCTCTGAGGAGTGTTATAGCCCTGGGTGCAATGCTGCCTGACCCGACTGTGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTCCAAA-CCCTCACGCGTAATGAAAGTGAATGGAGGTGGGAACCCCGTCAGGGGCGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG Tuber_verrucosivolvum_KY013651 GTAACGGCGAGTGAAGCGGCAA-GAGCTCAAATTTGAAATCTGACGCCTCCGGTGTCCGAGTTGTAATTTGGAGAGGCATCTTTGTGAGGGGCCCAGCCTAAGCGCCTTGGAACAGCGCGTCACAGAGGGTGAGAATCCCGTTCTTGGCTGGATGTCCCCTCCCATAAAAAGCGCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCAGCCCGTGACAAACAACCGTCCTCCGGGTCGGTGCTCTTGTTCTGGGCTGGGCCAGCATCAGTTGGGACGGCGGGACAAAGGCCTGGGGAATGTGACTCCTCTGAGGAGTGTTATAGCCCTGGGTGCAATGCTGCCTGACCCGACTGTGGACCGCGCTTCGGCTAGGATGCTGGCGTAATGGTCTTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCAAGTGTTTGGGCTCCAAA-CCCTCACGCGTAATGAAAGTGAATGGAGGTGGGAACCCCGTCAGGGGCGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAGGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG ; END; BEGIN TREES; TITLE Tuber_ITS; LINK TAXA = Taxa2; TRANSLATE 1 Tuber_pseudoexcavatum_MG871289, 2 Tuber_neoexcavatum_KY013632, 3 Tuber_neoexcavatum_KY013634, 4 Tuber_neoexcavatum_KY013637, 5 Tuber_sinoexcavatum_JX458717, 6 Tuber_sinoexcavatum_JX458718, 7 Tuber_fulgens_HM485358, 8 Tuber_excavatum_KJ524533, 9 Tuber_verrucosivolvum_KX904887, 10 Tuber_verrucosivolvum_KX904888, 11 Tuber_badium_KX904889, 12 Tuber_depressum_KX904890, 13 Tuber_depressum_KX904891, 14 Tuber_depressum_KX904892, 15 Tuber_excavatum_HM152018, 16 Tuber_excavatum_Var_longisporum_HM152005, 17 Tuber_excavatum_Var_intermedium_HM151977, 18 Tuber_excavatum_FN433142, 19 Tuber_excavatum_KC330227, 20 Tuber_iranicum_4939_MN854634, 21 Tuber_iranicum_4965_MN854635, 22 Tuber_excavatum_FN433141, 23 Tuber_excavatum_FN433140, 24 Tuber_excavatum_FM205561, 25 Tuber_fulgens_JQ288917, 26 Tuber_fulgens_HM152024, 27 Tuber_fulgens_HM152021, 28 Tuber_neoexcavatum_KY013626, 29 Tuber_neoexcavatum_KY013625, 30 Tuber_neoexcavatum_KY013633, 31 Tuber_excavatum_FJ748899, 32 Tuber_excavatum_HM485355, 33 Tuber_excavatum_HM152012, 34 Tuber_excavatum_HM152013, 35 Tuber_excavatum_FM205556, 36 Tuber_excavatum_FM205555, 37 Tuber_fulgens_FM205568, 38 Tuber_excavatum_FM205662; TREE Imported_tree_1 = [&R] (1:0.39793041,((7:0.00359571,(26:0.02721449,27:1.0E-6)100:0.02663933)97:0.04074685,(((5:0.01055888,6:0.00543519)99:0.01380595,(9:1.0E-6,10:1.0E-6)98:0.04789527)72:0.0038377,(((24:0.00459951,31:0.00326994)100:0.13940271,((32:0.00395444,(8:1.0E-6,19:1.0E-6):1.0E-6)88:0.00695963,(18:0.00365954,(16:1.0E-6,17:1.0E-6)91:0.00359752)54:2.9459E-4)91:0.04760125)100:0.01733634,(((11:0.02050902,(13:0.00356348,(12:1.0E-6,14:1.0E-6)69:1.0E-6)100:0.03368844)63:0.01381024,((4:1.0E-6,(2:1.0E-6,30:1.0E-6)70:0.00181695)42:1.0E-6,(3:1.0E-6,(28:1.0E-6,29:1.0E-6)27:1.0E-6)67:0.00181117)97:0.03752196)90:0.02138996,((15:0.00825592,25:0.00827022)100:0.07630938,((38:1.0E-6,(23:1.0E-6,(22:1.0E-6,37:1.0E-6)28:1.0E-6)69:0.00163672)96:0.01795673,((20:1.0E-6,21:1.0E-6)100:0.01735412,(33:1.0E-6,(34:1.0E-6,(35:1.0E-6,36:1.0E-6)24:1.0E-6)27:1.0E-6)100:0.01376454)66:0.00692967)90:0.0578004)53:0.00671954)76:0.02880151)52:0.05122529)43:0.01235962)21:0.39793041); END; BEGIN TREES; TITLE Tuber_LSU; LINK TAXA = Taxa1; TRANSLATE 1 Tuber_pseudoexcavatum_MG871325, 2 Tuber_fulgens_JQ925691, 3 Tuber_verrucosivolvum_KY013650, 4 Tuber_verrucosivolvum_KY013651, 5 Tuber_badium_KY013652, 6 Tuber_depressum_KY013653, 7 Tuber_depressum_KY013654, 8 Tuber_depressum_KY013655, 9 Tuber_neoexcavatum_KY013641, 10 Tuber_iranicum_4939_MN856154, 11 Tuber_iranicum_4965_MN856155, 12 Tuber_excavatum_DQ191677, 13 Tuber_excavatum_GU979140, 14 Tuber_neoexcavatum_KY013644, 15 Tuber_neoexcavatum_KY013647, 16 Tuber_neoexcavatum_KY013642, 17 Tuber_excavatum_JQ925689, 18 Tuber_excavatum_JQ925690, 19 Tuber_excavatum_FJ809824, 20 Tuber_neoexcavatum_KY013645, 21 Tuber_excavatum_FJ809825; TREE Imported_tree_1 = [&R] (1:0.095094015,((18:1.0E-6,19:1.0E-6)53:1.0E-6,(12:0.00109892,((10:0.00122249,11:1.0E-6):0.01353354,(((17:1.0E-6,21:1.0E-6)100:0.02752405,(2:0.0133911,(3:1.0E-6,4:1.0E-6)100:0.01970779)82:0.00742702)35:0.0022314,((5:0.00125148,(6:1.0E-6,(13:1.0E-6,(7:1.0E-6,8:1.0E-6)21:1.0E-6)15:1.0E-6)63:1.0E-6)84:0.00848235,(14:0.0025164,(20:0.00123802,(15:1.0E-6,(9:1.0E-6,16:1.0E-6)29:1.0E-6)52:1.0E-6)63:1.0E-6)92:0.0033464)60:0.00747293)49:0.00116537)100:0.013687)69:0.00133449)41:0.095094015); END; BEGIN TREES; TITLE Tuber_Combined; LINK TAXA = Taxa3; TRANSLATE 1 Tuber_pseudoexcavatum_MG871289, 2 Tuber_iranicum_4939_MN854634, 3 Tuber_iranicum_4965_MN854635, 4 Tuber_fulgens_HM485358, 5 Tuber_verrucosivolvum_KX904887, 6 Tuber_verrucosivolvum_KX904888, 7 Tuber_badium_KX904889, 8 Tuber_depressum_KX904890, 9 Tuber_depressum_KX904891, 10 Tuber_depressum_KX904892, 11 Tuber_neoexcavatum_KY013634, 12 Tuber_neoexcavatum_KY013625, 13 Tuber_neoexcavatum_KY013626, 14 Tuber_excavatum_FJ748899, 15 Tuber_excavatum_HM485355, 16 Tuber_neoexcavatum_KY013633; TREE Imported_tree_1 = [&R] (1:0.19677400232026715,(15:0.02142231609409334,(14:0.06813941277407876,((4:0.029850295916244166,(5:1.00000050002909E-6,6:1.00000050002909E-6):0.035736347052273215):0.02420365925542346,((2:7.093026496149345E-4,3:1.00000050002909E-6):0.04319693633686581,((7:0.009199671493649645,(9:0.0014776325026539486,(8:1.00000050002909E-6,10:1.00000050002909E-6):1.00000050002909E-6):0.013129850338981343):0.010195584271590234,(16:0.002258884540771402,(12:1.00000050002909E-6,(11:1.00000050002909E-6,13:1.00000050002909E-6):1.00000050002909E-6):1.00000050002909E-6):0.017995283383510405):0.016011642780534716):0.010139177040713048):0.008179949932479008):0.01310185530777033):0.19677400232026715); END;