#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 25, 2024; 7:52 GMT TreeBASE (cc) 1994-2008 Study reference: Laroche-johnston F., Bosan R., & Cousineau B. 2020. Group II introns generate functional chimeric relaxase enzymes with modified specificities through exon shuffling at both the RNA and DNA level. Molecular Biology and Evolution, 38(3): 1075-1089. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S27000] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=17; TAXLABELS Enterococcus_faecalis_pTEF4 'Lactococcus lactis 1064_C11' Lactococcus_lactis_1AA59 Lactococcus_lactis_CF103 Lactococcus_lactis_CF112 Lactococcus_lactis_DmW198 Lactococcus_lactis_HP Lactococcus_lactis_KLDS Lactococcus_lactis_LMG9447 Lactococcus_lactis_pAF12 Lactococcus_lactis_pAH82 Lactococcus_lactis_pJM4A Lactococcus_lactis_pRS01 Lactococcus_lactis_pSK11P Lactococcus_lactis_pUC063C Lactococcus_lactis_pUC77B 'Lactococcus raffinolactis Str_4877' ; END; BEGIN TAXA; TITLE Taxa2; DIMENSIONS NTAX=22; TAXLABELS Enterococcus_faecalis_pTEF4 Lactococcus_lactis_1064.C11 Lactococcus_lactis_1AA59 Lactococcus_lactis_CF103 Lactococcus_lactis_CF112 Lactococcus_lactis_DmW198 Lactococcus_lactis_G50 Lactococcus_lactis_HP Lactococcus_lactis_KLDS Lactococcus_lactis_LMG9447 Lactococcus_lactis_p275D Lactococcus_lactis_pAF12 Lactococcus_lactis_pAH82 Lactococcus_lactis_pCV56A Lactococcus_lactis_pIL6 Lactococcus_lactis_pJM4A Lactococcus_lactis_pNZ712 Lactococcus_lactis_pRS01 Lactococcus_lactis_pSK11P Lactococcus_lactis_pUC063C Lactococcus_lactis_pUC77B 'Lactococcus raffinolactis Str_4877' ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M58879] TITLE Lactococcus_lactis_Alignment_of_17_Relaxases_Exon2; LINK TAXA = Taxa1; DIMENSIONS NCHAR=1369; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Enterococcus_faecalis_pTEF4 CATATTATTTTTAGTTCAACCAATTTAAAAAC---------------------------------------AGGTAAAGCCTTTCGCTGGCAAAAAGGAACCAAAAAAGTCTTTGAACAAATTTCGGATAAAATTGCAGCGAAGGAAGGCGCAAAAATTATTGAAAA---------ATCACCGAAGCAAACTCATACAAAATATACAAAATGGCAAACAGAGTCCATTTATAAACAAAAAATAAAAAGTCGGTTAGACTTTTTATTAGAACAAAGTTCTTCAATTAATGACTTCCTAGAAAAAGCAGAAGCTTTGAATTTATCGGCAGACTTTTCTAATAAGTGGACGATCTATCGATTGCTTGACGAACCA------------------CAAATAAAAAATACTCGTAGTCGAAGCTTG---TCAAAAAG---------------------------TGACCCCACTAGATATAATTATGAAAAGATTATTGAACGATTGAAAGAAAATAAAAA------------CGTTCTAACAGTGGAAGAATGTGTCAAAAGATACGAAGAAAAAAATGAACAAGAAAAAAATAATTTTGACTATCAATTTACAATAGAACCATGGCAACTGTCTCACAAAACAGAAAGAGGATATTATATAAATATCGATTATGGCTATGGTA---------ATTCTGGAAAGCTCTTTGTAGGAGGGTATAAGGTTGATCCATTAGACAACGGTAATTACAATATCTATATTAAAAGAAATGAGTATTTTTATTTTATGAGCGACAAGGATGCTACTAAAAGTAAATACTTAATAGGGGCTTCGTTGATTAAACAATTACGACTGTATAATGGACAAACACCACTGAAAAGAGAACCTGTGATGCAAACCATTGATGAATTAGTTAGTGCCATTAACTTTTTAGCGGCGAATGAAATCGAGGACACAAGACAACTAAAATTAT---TAGAAGAAAAATTAGAAGTTGCTTTTCTTGAAGCAGAAAAAACTTTAGAGACTCTTGACGAGAAGATGTTAGAGCTGCACCAATTAAGTAACCTCTTATTAGAAAATGAACTGCAGGGAGATCCAGAGTTAATTCAGAAAAAATTGAAAACATTGTTACCAGACGCAACGCTTGCGGAATTTTCTTAT---GAAGATGTTCGAGGAGAAATAGAAGCAATTAAAACCAGTCAAACTTTGTTAGAGAGTAAACTGGAACGAACTCGAAATGAAATTAATCAGCTTCATGAAATACAAGCCGTACAGGAAAAAGAGCCAGAGA----AGC-------------------AAACCGACATTAAGCCCAAACTAT-----------------------AA 'Lactococcus lactis 1064_C11' CATATTATTTTGAATGCCACAAATCCAAAGACACTCAAAAAATTT---------------------------------------CAACAATCTAAAAGCCAGCTAGAAGAATTGAAAGAAATATCTGATGTTATTTCTAAAGAGTATGGCTGTAAAATTATTGACCGTTCTTTAAA---------AAATTCTCACAAAAAATATCAAGTCTACCTTGCTAAAAATTCTTATCGAAAAGAAATAAAAAGCAAAATTAAATTCTTACTTTCTCATGCCAGCAATTGGACCGACTTTAAAAATAAAGCAAATGCTTTAGGGCTGATTGTTGATGATAAAGGAAA-GTACACCA----------CTTACCAATTGA-GTGGCACTAGT------CAAGAAAGAAAAGTCAGAGATAGAAGC------CTAAAAAATC---------------------------------AAGCATTCATGAAAGAAGCCATTTCTGAACGCTTGAAAGAAAATGAAGT------GGTTTATACAGAATCAGAAGTCAAAGAACTATGGGCAGAGAATCAAACCATTCAAGACAAGGAACAAGAAACAGAAATTGAAATGCTTATAGAAGATTGGCAAGTCGAAAAAGAAACAGCCGATTATTTATATGTGAATATCAACATTGGTTTAGAAAGAGCGCAACGAAAATCCGCAATCAAAATTCCAGCACGTTGTGTGGACAAATTAGAAAATGGCAATTACCAAGTTTTTCTCAAAAAACAAGACCGCTTTTATTTTGTTGATAGTAAAAATCCAGAGAACAACAAAATTATGCTTGGAAAAACCGTTGCGAAAAACCTACAAAATCAAAGCGGAAGCGTACCGCTTTATTCTAACAATACCAAAATCAAGTTGAAACAACTGTTTAATGAGTTTGATTTTCTTATTTCTAAAGGATTAGATTTTGATACTTCTTTTGAAGCTA---TCGGAAAAGAATTAGAACAAACCTATTACCAAACAGAAAGCATTTTAGAAAACCTAGATAAGAAAATTCTTGAGTATGTCGAAGAAAATAAAGCCTATGCACGACCAAACACAAGAATA------TTAAAAACAATTGA---------------------------------------------------------------------------AAACCTACAAAAGGAACGAACAGACTTACACAAGACCTTAAAACAAGTCGAAAAAGAAATGCTTTACTATGACAAGTCCGTTGACCGTTACGAAGATTACCAGCAAG----AACACACCA-AAAATAAAAGCCACCATTCCCCACGTTTGTAA----------------------------- Lactococcus_lactis_1AA59 CATATTGTGCTTAATGCAACTGACCCTTTGACTTTAAATAAATTT---------------------------------------CAACAATCAAAAAATGATTTGGAACGATTGAAAGAAATTTCTGATAAGATTTCTAAAGAATATGGTTGTAAAATTATTGACCGTCCTGAACAAAAATTAGGAAACTCTCACAAAAATTATTTGGTCTATCTTGCTCAAAATTCTTACCGGAAAGAGATTAAAAACAAACTTGAATTTTTAATGAACCATTCTCACACTTGGGAAGATTTTAAAACAAAAGCAAGAGCCTTAAATTTAAAAGTGGACGACACAAAA-AAATATACCA----------CTTATCTTTTAGAGGGAAGCGAAC------AA-ACCAAAAAAATTAGAGATAGAAGT------TTAAAAAATG---------------------------------ATAAATTTTTAATGGAAAATCTCAAAGAACGGATAGAAAGAAACACCAT------TGGTTATTCCGTTGAGGAAGTCGTGAAACTTTGGAATGACAAAGAAAGCATTCAAGAAAAAGGACAAGAAAAAGAAATTGAAATTTTACTTGAACATTGGCAAGTAACAAAAGAAACTGAAAAAGATTTAGTTGTAACCATTGATACTGCATTTGATA---------ATGAAGCAACGATTAAGATACCTGCACGCTGTGTTGACAAATTAGAAAACGGACACTATAAAATATTTATTAAAAAGGGCGACCGCTTTTCGTATATTGATAAAAGAAGTCCGGCAAACCATAAAATCATGTACGGGGCAACCGTTGCTAAAAATTTACAAAGACAAAGTGGAAATATCCCTCTTTATTCTGACAATGTCAATATCAAACTCAAACAAGTTTTTCATGAGTTCGATTTCTTAATCAGTCAAGGGCTTGGTTTTGATAGAAGTTTTGAAACCA---TAGGAGAAGAGTTAAAAGCCACCTATCAAGAAACACAACATCAATTAGACAAGCTAGACACAAAGATTTTAGAATACGTGAAAACAACAAAAACGTTACCTTATGAAGATACCTCAATC------AGAGATACCATTAA---------------------------------------------------------------------------AAACTTAACAAAAGAACGTGATGATTTGCGAGATACTTTATATAAAGTCGATAAAAACATTCAATACTATCAAAAATCAGAACAGCGATTAGAAGCCTATCAAAAAA----ATCAAAGTC-CAAAAAATAAAGCACGTGATGATGATTTTGAAATTT-----------------------AG Lactococcus_lactis_CF103 CATATTGTTTTAAATGCAACCAACCCCTTGACCTTAAACAAATTT---------------------------------------CAACAAAATAAAAATGATTTGGAACGATTGAAAGAAATTTCTGATAAGATTTCTAAAGAATATGGTTGTAAAATTATTGACCGTCCTGAACAAAAATTAGGAAACTCTCACAAAAATTATTTGGTTTATCTTGCTCAAAATTCTTACCGGAAAGAGATTAAAAACAAACTTGAATTTTTAGTGAGCCATTCTCACACTTGGGAAGATTTTAAAACAAAAGCAAGAGCCTTAAATTTAAAAGTGGACGACACCAAAAAAATATACCA----------CTTATCTTTTAGAGGGAAGCGAGC------AA-ACCAAAAAAATTAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Lactococcus_lactis_CF112 CATATTATTTTTAATGCGACCTCTTCAGTTGATTTAAAAAAATTT---------------------------------------CGTTGGCAAAAAGGGACAACAAATCTTCTGAGAAATATTTCTGACAAAATAGCAGATTATCATGGAGCAATGATTTTAGATGCTCCAAAA---------AGAACCTCTCATGCCAAGTATGAAAAATACAAACGAGAAAATAATTATCGTCAAATTTTAAAAGAGCGATTAGATTTTTTGTTAAGACACTCTTTAAATTTTGAGGACTTCAAACAAAAAGCACATGCGCTTAATATCCAAGTTGACGAGCATCACAAGTCAAAAGATTATGGCCAAGTCATCAATTATCAACTCACAGATTTGCCTCAACAACGACCTGCACGTGATTATACTTTGAACAAAAAAAGTC---------------------------------GAAAATATTCTTTTGATAAACTAGTAGAGCGCTTTGAAAATAATCATATCGAAGGGGTTTATCATGTTGACCAAATCAAACAAGCCTTT------CAAGATGAGCATCAAAAAATTGAAAAAGAGCCTGATCTTGAGTTCGTGATTGAGCCCTGGCAAATTGAAAAAGATACAATGAATGCTATTTATGTTCGTATTGAATATGGCCGCTA---------TGAGGAAGGTGTGATTAAAATTCCTGATTATAAATTAGATAAGCTAGAAGACGGTTCTTACAAGGCTTATTTTAAAAATAAAGACACATTTTATTTTATTAATGATGAAGTAAATAAAA---GTAAGTTTTTAAAAGGTTCTGTGCTTTCTAAAATTTTATCTGGTGAAAGTGGTACAATTCTTCAGCGCAAAAATTCAGCCATTCAAAATGTACGCGAAATGGTTGCTGCGTTGAATTTAATTTCAGAACGCCAGGTTAACGGTGAAAAAGCAGTTGAAGTGC---TTGGTCAAAAATTTATGGATGATGTGGAACAAATTAAGCAAGCCCTACAAAATTTAGATGCTCATATTTTAAAACAGAATGAGCAATTAAAATA---CGAAAATCCAACTGAAGAGAAT------AAACTCAAAATTAA---------------------------------------------------------------------------AGCTCTTCAACTTGAGCGAAAAGATTTGCAAGCTCAATATCAAAAAGTGATTAAAAAGATGAAAACTTATGATGCAGGACAAGATA----------TTATGAACGAA----AAAATTCATGAAAATGTCCAGACTGCAGATAAGGATATGCAAATAT-----------------------AA Lactococcus_lactis_DmW198 CATATTATTTTTAATGCGACTTCAAGCACTGATTTTAGAAATTAT---------------------------------------CGATGGCAAAAAGACACGCTACAGTTAGCACGTGAACTCTCTGATAAAATTGCAGAAAAACATGGCGCAATCTTAGAAAAAAC---AA---AACCCTATCAAAATTATCATCGAAACTATCAAAAATATTTATCAGATAATCCTATACGACCCGAACTCAAACAACGTTTAAATTTTCTTTTAAAACATTCTCTTAGTCTATCTGATTTTCTTCAAAAAGCAAAGTTACTTCATGTTGAAGTTGATGCATCTGGAAAATACACGACTTATCGA------------------TTGACGGATTTTGATCAAAAACGTCCGATTCGAGATTGTAGTTTAATCTCAAAAGAAGATAAAAAAAGAATGGATGCTCATCCTGAAAAAAGAATCTTCTCAAAAGAAGAAATTGAGAGACGGTGCGAAAAAAATGTGCAGAATCATTCAATTGTCTTTGGTCAGTCAGAAATTTTTAAAGAGTATCAAAAACAACAAAAGTGGTTTAAAGAAAATTCAGATATTCGATTAGTCATCGAACCTTGGCAAATTGAATCGAAAACACCTGATGCCATTCGAGTTTTTGTGGAGGCAGGG------------CATCGGAAAGGAACTGTAAAAATTGAATCGACTTTTTTTGATAAATTAGGAGAAAATTTT---GAGCTTCATCTTAATAATTTTTCAAAATTTAAGTTTTTAGACGAGAGAAACCAAAACTATTCATCTATTCTTTTAGGAAAAGAAATTATCGGTCAACTCTCAAAAGAAAATGAACGTATCCCTGCTAGAAAAAATTATGGAATGAACTATGTGCATGACTTATTTGAAGCAACAAACTTACTAAGTCGACATGGAATTAGTGGGCAAGAATCTTTCAAACATC---TCGGAGAAGAGTTTATCACGAATATGGAAAAAGTAGAATTAGCACTTGAACAATTAGATAAAGAAATACTTACTCAAACAGAACGAGTGAAATTCAATCAA---GGGAAT---------------------------------------------------------------------------------CCTCAACTCATTGAACAGCTCAAACAATTACAAAATGAACATAAATCTTTAGAATCAGCCTACAAAGAACTCACAGATGAACTTGAAATTTACGATCAAATTGAAAAC---TTGCAAGCTCAAAAAACAAGAAAAACGAACTT-CACAAGAACAGGAGAAGCAACCGCATGTCAGAAGATAACTTTCAATCCCTCGATAAATTAG Lactococcus_lactis_HP CATATTGTTTTAAATGCAACCAACCCCTTGACCTTAAACAAATTT---------------------------------------CAACAAAATAAAAATGATTTGGAACGATTGAAAGAAATTTCTGATAACATTTCTAAAGAATATGGCTGTAAAATTATTGTCCGTCCTGAACAAAAACTAGGGAACTCTCACAAAAATTATTTGGTTTATCTTGCTAAAAATTCTTACCGAAAAGAGATTAAAAACAAACTTGATTTTTTAATGAACCATTCTCACACTTGGGAAGATTTTAAAGAAAAAGCAAGAGCCTTAAATTTAAAAGTGGACGACACAAAA-AAATATACCA----------CTTATCTTTTAGAGGGAAGCGAGC------AA-ACCAAAAAAATTAGAGATAGAAGT------TTAAAAAATG---------------------------------ATAAATTTTTAAAAGAAAATCTCAAAGAACGGATAGAAAAAAATACCAT------TGGTTATTCAGTAGATGAAGTCGTGAAACTTTGGAAAGACAAAGAAAGCATTCAAGAAAAAGGACGAGAAAAAGAAATTGAAATTTTACTTGAACATTGGCAAGTAACAAAAGAAACTGAAAAAGATTTAGTTGTAACCATTGATACTGCATTTGATA---------ATGAAGCAACGATTAAGATACCTGCACGCTGTGTTGATAAATTAGAAAACGGACAGTATAAAATATTTATTAAAAAGGGCGACCGCTTTTCGTATCTTGATAAAAAAAGTCCGGCAAACCATAAAATCATGTATGGGGCAACCGTTGCTAAAAATTTACAAAGACAAAGTGGAAATATCCCTCTTTATTCTGACAATGTCAATATCAAACTCAAACAAGTCTTTCATGAGTTCGATTTCTTAATCAGTCAAGGGCTTAGTTTTGATAGAAGTTTTGAAACCA---TAGGAGAAGAGTTAAAAGCCACCTATCAAGAAACACAACATCAATTAGACAAGCTAGACACAAAGATTTTAGAGTACGTGGAAACAACAAAAACCTTGCCTTATGAAGATACCTCTATC------AGAGATACCATTAA---------------------------------------------------------------------------AAACTTAACAAAAGAACGTGATGATTTGCGAGATACTTTATATAAAGTCGATAAAAACATTCAATATTATCAAAAATCAGAACAGCGATTAGAAGCCTATCAAAAAA----ATCAAAGTC-CAAAACATAAAGCACGTGATGATGACTTTGAAATTT-----------------------AG Lactococcus_lactis_KLDS CATATTGTCTTTAACTCAACGAATGCGATGACGGGAAAACAGTTTGAGTGGCAGTTGCCGCG---------CTTAAAAAATGGCAAGACTAAAGATATGACTTATGAAGCTTTTCAAAAAATCTCGGATCGGATTGCCTCAAAGGCAGGTGCCAAAATCATTGAGTT---------CTCGCCTAAAAATTCTCATGCCAAGTACACCAAGTGGCAGACCGAAAATATTTTTAAATCACGGATTAAATCCCGTTTGGATTTTTTGTTGGAGCATTCCCTTGACTTAGATGATTTCAAAACAAAGGCTAAAGCTCTCAACTTAGCAGTGGATTTTTCGGGGAAGTGGGCAACCTATCGTTTGTTAGATGATGTG------------------CAAGTGAGAAATACCCGCGGACGTAACTTG---GTCAAGTC---------------------------TGACCCAGAGCGCTATAATCTGGATCGGATTGAAGCTCATCTGAAAAAGAATACGGG------------GATGTTTTCGGTGGCAGATGTTGTCAATCAGTACGAAGAAAAAATCGAAACCATTAAAAATGATTTCGATTATCAAGTGACGATTGAACCTTGGCAGATTGACCATGTGACGACCAAAGGACTTTATATCAATGTGGACTTTGGTCTCTCTC---------AACATGGTGTCATCTTCATCGGTGCTTACAAGACCGACTTGCTAGAGGACGGTAATTATAATCTTTACCTCAAAACCAATGACTATTTTTACTTCATAGACATGGCAGGTGCAGCCAATAATCGGTTTATGATGGGACCAACCCTCATGCGGCAGCTTAGCCTTTATAATGGCACTGTTCCTATCGCCAAAGAAAAAGTGATTTCGACGATTGACGAATTGACCGAGGCGATTAACTTTTTGGCGAGCCATGGTGTGACGGAGGGCGGCGAGCAACTGGTGCGATTAGAGCAGCAACTGCTCGAAGCGGTGCAAGAGGCAAAAAAACGACTGAAAGCATTAGAACAGAAAATCAGAGACTTGAATGTCTTAGCAAAAGAACGAATTGTCA--------------------GCAGTAATGAAAGAACTAAAGA----------------CGAAGAACTTGAGCAAATTAAAAAT------------------CAAATTGCTTCGGTCAAGGTTAGCCAAAGATTGTTAAAAGGAAGGTACAATGAGACAATATCGCAAATTGATGAGTATCAAGAAATTCTACAAGCTAGGAAAAAT---------A----AGG-------------------GAAAGTAA----------------------------------------- Lactococcus_lactis_LMG9447 CATATTATTTTTAATGCGACTTCAAGCGCTGATTTTAGAAATTAT---------------------------------------CGTTGGAAAAAAGACACACTACAATTAGCTCGTGAACTCTCTGATAAAATTGCTGAAAAGCACGGTGCAATTTTAGAAAATAC---AA---AACCCTATCAAAATTATCATCGGAACTATCAAAAATACTTATCAGAAAATCCAATTCGCCCCGAACTCAAACAACGTTTAAATTTTCTTTTGAAACATTCTCTTAGTCTTTCTGACTTTATTCAAAAAGCTAAACACCTTAACATTGAAGTCGATACATCTGGTAAATACACGACTTACCGT------------------TTGACTGATTTTGAGCAAAAACGTCCGATTCGAGATAGTAGTTTAATCTCAAAAGAAGATAAAAAAAGAATGGATGCTCACCCTGAAAAAAGAGTTTTCTCAAAAGAAGAAATTGAGAAACGATGCCAAAAAAATGTTAAAAATCATTCCATTGTTTTTGGTCAATCAGAAATGTTAAAAGAGTATCAAAAACAACAAAAGTGGTTTAAAGAAAATTCAGACATTCGGTTAGTCATCGAACCTTGGCAAATTGAATCGAAAACACCTGATGCCATTCGAGTTTTTGTGGATGCAGGG------------CATCGGAAAGGAACCGTAAAAATTGAATCGACTTTTTTTGATAAAGTAGGAGAAAATTTT---GAGCTTCATCTTAATAATTTTTCAAAGTTTAAGTTTTTAGACGAGAGAAACCAAAACTACTCATCCATTCTTTTAGGAAAAGAAATTATCGGTCAACTTTCAAAAGAAAATGAACGTATCCCTGCTAGGAAAAATTATGGAATGAACTATGTTCATGATTTATTTGAAGCCACAAACCTACTAAGTCGTCATGGAATTAGTGGACAAGAATCTTTCAAACATC---TCGGAGAAGAGTTTATCACAAATATGGAAAAGGTGGAATTAGCCCTTGAACAATTAGATACAAAAATACTTGCTCAAACAGAGCAAGTGAAATTCAATCAA---GGGAAT---------------------------------------------------------------------------------CCTCAACTCATCGAACAGCTCAAACAATTACAAAACGAACGCAAATCTTTAGAAACAGCCTACAAAGAAATCACAGATGAACTTGAAATTTACGACCAAATCGAAAAC---TTGCAAGCTCAAAAACAAG-AAAAACAAAATT-CACAGGAACAGGAGAATCAACCACATGCCAGAAGATAA----------------------- Lactococcus_lactis_pAF12 CATATTATTTTGAATGCCACGAATCCAAAAACACTCAAAAAATTT---------------------------------------CAACAATCTAAAAGCCAGCTAGAAGAATTGAAAGAAATATCTGATGTTATTTCTAAAGAGTATGGCTGTAAAATTATTGACCGTTCTTTAAA---------AAATTCTCACAAAAAATATCAAGTCTACCTTGCTAAAAATTCTTATCGAAAAGAAATAAAAAGCAAAATCAAATTTTTACTTTCTCATGCCAACAATTGGAACGATTTTAAAAATAAAGCAACTACTTTAGGGCTGATTGTTGATGATAAAGGAAA-GTACACCA----------CTTACCAACTGA-GTGGCACTAGT------CAAGAAAGAAAAGTCAGAGATAGAAGC------CTAAAAAATC---------------------------------AAGCATTCATGAAAGAAGCCATTTCTGAACGATTGAAAGAAAATGAAGT------GGTTTATACAGAATCAGAAGTCAAAGAACTGTGGGAAGATAATCAAACCATTCAAGACAAGGAACAAGAAACAGAAATTGAAATGCTTATAGAAGATTGGCAAGTCGAAAAAGAAACAGCCGATTATTTATATGTAAATATCAATATTGGTTTAGAAAGGGAGCAACGAAAATCTGCAATCAAAATTCCAGCACGTTGCGTTGACAAATTAGAAAATGGCAATTATCAAGTTTTTCTCAAAAAACAAGACCGCTTTTATTTTGTTGATAGTAAGAATCCAGAGAACAACAAAATCATGCTAGGAAAAACCGTTGCGAAAAACCTACAAAATCAAAGCGGAAGCGTACCGCTTTATTCTAACAATGCCAAAATCAAGTTAAAACAACTGTTTAATGAGTTTGATTTTCTTATTTCTAAAGGATTAGATTTTGATACTTCTTTTGAAGCTA---TCGGAAAAGAATTAGAACAAACATATTACCAAACAGAAAGCATTTTAGAAAACCTAGATAAGAAAATTCTGGAGTATGTCGAAGAAAATAAAGCCTATGCACGACCAAACACAAGAATA------TTAAAAACAATTGA---------------------------------------------------------------------------AAACCTACAAAAGGAACGAGCAGACTTACACAAGACCTTAAAACAAGTCGAAAAAGAAATGCTTTACTATGATAAATCCGTTGACCGTTACGAAGATTACCAGCAAG----AACACACCA-AAAATAAAAGTCAACATTCCCCACGTTTATAA----------------------------- Lactococcus_lactis_pAH82 CATATTATTTTAAATGCCACGAATCCAAAAACACTCAAAAAATTT---------------------------------------CAACAATCTAAAAGTCAGTTAGAAGAATTGAAAGAAATATCTGATGTTATCTCTAAAGAGTATGGCTGTAAAATTATTGACCGTTCTTTAAA---------AAATTCTCACAAAAAATATCAAGTCTATCTTGCGAAAAATTCTTACCGAAAAGAAATAAAAAGCAAAATCAAATTTTTACTTTCTCATGCAAACAGCTGGAACGATTTTAAAAATAAAGCAACTGCTTTAGGGCTGATTGTTGATGATAAAGGAAA-GTACACCA----------CTTACCAATTGA-GTGGCACAAGT------CAAGAAAGAAAAGTTAGAGATAGAAGC------CTAAAAAATC---------------------------------AAGCATTCATGAAAGAAGCCATTTCTGAACGCTTGAAAGAAAATGAAGT------GTTTTATACAGAATCAGAAGTCAAAGAACTATGGGAAGAGAATCAAACTATTCAAGACAAGGAGCAGGAAACCGAAATTGAAATGCTTATAGAAGATTGGCAAGTCGAAAAAGAAACACCCGATTATTTATATGTGAATATCAATATTGGTTTAGAAAGAGAGCAACGAAAATCTGCAATCAAAATTCCAGCACGTTGCGTTGACAAATTAGAAAATGGCAATTACCAAGTTTTTCTCAAAAAACAAGACCGCTTTTATTTTGTTGATAGTAAGAATCCAGAGAACAACAAAATCATGCTAGGAAAAACCGTTGCGAAAAATCTACAAAATCAAAGCGGAAGCGTACCGCTTTATTCTAACAATGCCAAAATCAAGTTAAAACAACTGTTTAATGAGTTTGATTTTCTTATTTCTAAAGGATTAGATTTTGATACTTCTTTTGAAGCTA---TCGGAAAAGAATTAGAACAAACCTATTACCAAACAGAAAGCATTTTAGAAAACCTAGATAAGAAAATTCTTGAGTATGTCGAAGAAAATAAAGCCTATGCACGACCAAACACAAGAATA------TTAAAAACAATTGA---------------------------------------------------------------------------AAACCTACAAAAGGAACGAACAGACTTACACAAGACCTTAAAACAAGTCGAAAAAGAAATGCTTTACTATGACAAGTCCGTTGACCGTTACGAAGATTACCAGCAAG----AACACACCA-AAAATAAAAGTCAACATTCCCCACGTTTATAA----------------------------- Lactococcus_lactis_pJM4A CATATTGTGCTTAATGCAACCAACCCCTTGACCTTAAATAAATTT---------------------------------------CATCAAAATAAAAATGATTTGGAACGATTGAAAGAAATTTCTGATAAGATTTCTAAAGAATATGGCTGTAAAATTATTGTCCGTCCTGAACAAAAATTAGGAAACTCTCACAAAAATTATTTGGTTTATCTTGCTAAAAATTCATATCGAAAAGAGATTAAAAACAAACTTGAATTTTTAATAAACCATTCTCATACGTGGGAAGATTTTAAAGAAAAAGCAAGAGCCTTAAATTTAAAAGTGGACGACACTAAA-AAATATGCCA----------CTTATCTTTTAGAGGGAAGCGAGC------AA-ACCAAAAAAATTAGAGATAGAAGT------TTAAAAAATA---------------------------------ATAAATTTTTAAAAGAAAATCTCAAAGAACGGATAGAAAAAAATACCAT------TGGTTATTCCGTTGAGGAAGTCGTGAAACTTTGGAATGACAAAGAAAGCATTCAAGAAAAAGGACGAGAAAAAGAAATTGAAATTTTACTTGAACATTGGCAAGTAACAAAAGAAACTGAAAAAGATTTAGTTGTAACCATTGATACTGCATTCGATA---------ATGAAGCAACGATTAAGATACCTGCACGCTGTGTTGACAAATTAGAAAACGGACAGTATAAAATATTTATTAAAAAGGGCGACCGCTTTTCGTATATTGATAAAAAAAGTCCGGCAAACCATAAAATCATGGTTGGGGCAACCGTTGCTAAAAATTTACAAAGACAAAGTGGAAATATCCCTCTTTATTCTGACAATGTTAATATCAAACTCAAACAAGTTTTTCATGAGTTCGATTTCTTAATCAGTCAAGGGCTTGGTTTTGATAGAAGTTTTGAAACCA---TAGGGGAAGAGTTAAAAGCCACCTATCAAGAAACACAACATCAATTAGACAAGCTAGACACAAAGATTTTAGAATACGTGGAAACAACAAAAACGTTACCTTATGAAGATACCTCAATC------AGAGATACCATTAA---------------------------------------------------------------------------AAACTTAACAAAAGAACGTGATGATTTGCGAGATACTTTATATAAAGTCGATAAAAACATTCAATACTATCAAAAATCAGAACAACGTTTAGAAGCCTATCAAAAAA----ATCAAAGTC-CAAAACACAAAGCACGTGATGATGACTTTGAAATTT-----------------------AG Lactococcus_lactis_pRS01 CATATCATTTTTAATTCTACGAATCTTTATACTGGCAAACAATTTGACTGGAAAGTCATTCCTAAAGAGAAAACAAAAAGCGGCAAAGCTTATGATGTGACCAAAAATAATTTTGAAAAAGTCTCTGATAAAATTGCTTCACGTTATGGCGCAAAAATTATTGAAAA---------GTCTCCAGGTAACTCTCACTTAAAATATACAAAATGGCAAACTCAGTCCATTTATAAAAGTCAAATCAAACAACGGTTAGACTATCTTTTAGAAATGTCATCAGATATTGAAGACTTCAAAAGAAAAGCAACGGCTTTAAATTTATCCTTTGATTTTTCTGGCAAGTGGACCACTTATCGGCTGCTTGATGAACCT------------------CAAATGAAAAACACACGTGGACGGAATCTT---GATAAAAA---------------------------TCGTCCTGAAAAATACAATTTGGAATCTATTATTGAACGGCTCGAAACAAATGAGCT------------TTCACTTACGGTTGATGAAGTAGTGGAGCGGTATGAGGAAAAAGTTGACGTAGTTAAACAAGATTTTGATTATCAAGTTACGGTTGAAAAAGGGCAAATTGACCACATGACAAGTAAAGGATTTTACCTTAACGTTGACTTTGGGATTGCGG---------ATCGTGGTCAAATTTTTATTGGCGGTTATAAAGTTGACCAACTTGAAAATAGGGACTGCGTGCTTTATCTGAAGAAGAATGAAACCTTTCGTCTTTTGAGTGAAAAGGAGGCCTCCTTCACCAAGTATTTGACTGGTCATGACCTCGCAAAACAGTTAGGGCTTTATAATGGAACTGTTCCTTTAAAGAAAGAACCTGTGATATCCACAATTAATCAGTTGGTCGATGCGATTAACTTTTTAGCTGAACACGGCGTTACTGAAGGGACTCAATTTAATAATA---TGGAGAGCCAACTCATGAGCGCTCTTGGGGAGGCGGAAGAAAAACTTTATGTTATTGATAATAAAATTATGGAGTTAACCAAAATTGCAAAGTTACTCATTGAAAAAGAGTCGGATCATTCTCAAGCGGTTATTAATGAATTAGAGAAT------------CTAGGAGTGGGTCCGTCAATAAAATAT---CAAGACATTCACCAAGAACTTCAGTCTGAAAAAATGAGTCGAAAAATACTCAAAAACAAATTTGAACAAACCGTTGATGAGATTAATACTTTCAATGAAATTAGAGTTACTACCCTTGAA--GAAAATAA----AGG-------------------AAAAATACTATAA------------------------------------ Lactococcus_lactis_pSK11P CATATTGTGCTTAATGCAACTGACCCTTTAACTTTAAATAAATTT---------------------------------------CATCAAAATAAAAATGATTTGGAACGATTGAAAGAAATTTCTGATAGAATTTCTAAAGAATATGGTTGTAAAATTATTGTCCGTCCTGAACAAAAACTAGGGAATTCTCACAAAAATTATTTGGTCTATCTTGCTCAAATTTCTTACCGGAAAGAGATTAAAAACAAACTTGAATTTTTGATGAACCATTCTCATACGTGGGAAGATTTTAAAGAAAAAGCAAGTGCCTTAAATTTAAAAGTGGACGATACTAAA-AAATATACCA----------CTTATCTTTTAGAGGGAAGCGAAC------AAACCAAAAAAAATTAGAGATAGAAGT------TTAAAAAATG---------------------------------ATAAATTTTTAAAAGAAAATCTCAAAGAACGGATAGAAAAAAATACCAT------TGGTTATTCAGTTGAGGAAGTCGTGAAACTTTGGAATGACAAAGAGAGTATTCAAGAAAAAAATCAAGAAAAAGAAATTTCAATTTTGGTAGAAGATTGGCAAATTGAGAAAGAAACTGAAAATTTTTTATACGTAACGATTGATACTGCTTTAGATA---------AAGAAGCGACAATAAAGATACCTGCACGCTGTGTCGATAAATTAGAAAATGGCGATTATCAAGTCTTTATCAAAAATAAAGACCGATTTTCTTATCTTGATAAGAAAAGTCCGGCAAACAATAAAATCATGTATGGAACAACTGTTGCTAAAAATCTACAACGACAAAGTGGAAATGTCCCTCTTTATTCTGACAATGCCAATATCAAACTCAAACAAGTCTTTCATGAGTTCGATTTCTTGATTAGTCAAGGACTTGGTTTTGATAGAAGTTTTGAAACCA---TAGGAAAGGACTTAAAAGCCACCTATCAAGAAACAGAAAACGAATTAGATAAATTAGATACAAAGATTATAGAGTATGTCGAACAAAACAAAAGTTTAGATTATGTAGATACCACTATC------AGAGATACAATAAA---------------------------------------------------------------------------AAATCTAAAACTTGAACGTGATGATTTAAGAGATACTTTATATAAAGTCGATAAAAACATTCAATACTATCAAAAATCAGAACAGCGATTAGAAGCCTATCAAAAAA----ATCAAAGTC-CAAAACATAAAGCACGTGATGATGATTTTGAAATTT-----------------------AG Lactococcus_lactis_pUC063C CATATTGTGCTTAATGCAACTGACCCTTTGACTTTAAATAAATTT---------------------------------------CAACAATCAAAAAATGATTTGGAACGATTGAAAGAAATTTCTGATAAGATTTCTAAAGAATATGGCTGTAAAATTATTGACCGTCCTGAACAAAAATTAGGAAACTCTCACAAAAATTATTTGGTCTATCTTGCTCAAAATTCTTACCGAAAAGAGATTAAAAACAAACTTGAATTTTTAATGAACCATTCTCACACGTGGGAAGATTTTAAAGAAAAAGCAAGAGCCTTAAATTTAAAAGTGGACGACACAAAA-AAATATACCA----------CTTATCTTTTAGAGGGAAGCGAAC------AA-ACCAAAAAAATTAGAGATAGAAGT------TTAAAAAATG---------------------------------ATAAATTTTTAAAGGAAAATCTAAAAGAACGGATAGAAAGAAACACCAT------TGGTTATTCAGTTGAGGAAGTCGTGAAACTTTGGAATGACAAAGAAAGCATTCGAGAAAAAGGACAAGAAAAAGAAATTGAAATGTTACTTGAACATTGGCAAGTAACAAAAGAAACTGAAAAAGATTTAGTTGTAACCATTGATACTGCATTCGATA---------ATGAAGCAACGATTAAGATACCTGCACGCTGTGTTGACAAATTAGAAAACGGACAATATAAAATATTTATTAAAAAGGGCGACCGCTTTTCGTATATTGATAAAAGAAGTCCGGCAAACCATAAAATCATGGTTGGGGCAACCGTTGCTAAAAATTTACAAAGACAAAGTGGAAATATCCCTCTTTATTCTGACAATGTCAATATCAAACTCAAACAAGTTTTTCATGAGTTCGATTTCTTAATCAGTCAAGGACTTGGTTTTGATAGAAGTTTTGAAACCA---TAGGAGAAGAGTTAAAAGCCACCTATCAAGAAACACAACATCAATTAGACAAGCTAGACACAAAGATTTTAGAATACGTGGAAACAACAAAAACCTTGCCTTATGAAGATACCTCTATC------AGAGATACCATTAA---------------------------------------------------------------------------AAACTTAACAAAAGAACGTGATGATTTGCGAGATACTTTATATAAAGTCGATAAAAACATTCAATACTATCAAAAATCAGAACAGCGATTAGAAGCCTATCAAAAAA----ATCAAAGTC-CAAAACATAAAGCACGTGATGATGATTTTGAAATTT-----------------------AG Lactococcus_lactis_pUC77B CATATTGTGCTTAATGCAACCAACCCCTTGACCTTAAACAAATTT---------------------------------------CAACAAAATAAAAATGATTTGGAAACTTTAAAAGAGATTTCTGACCGTATCTCTAAAGAATATGGCTGTAAAATTATTGTCCGTCCTGAACAAAAACTAGGGAATTCTCACAAAAATTATTTGGTCTATCTTGCTCAAAATTCTTACCGGAAAGAGATTAAAAACAAACTTGAATTTTTAATGAACCATTCTCACACGTGGGAAGATTTTAAAACAAAAGCAAGCGCCTTAAATTTAAAAGTGGACGACACAAAA-AAATATACCA----------CTTATCTTTTAGAGGGAAGCGAAC------AA-ACCAAAAAAATTAGAGATAGAAGT------TTAAAAAATG---------------------------------ATAAATTTTTAAAGGAAAATCTCAAAGAACGGATAGAAAGAAACACCAT------TGGTTATTCCGTTGAGGAAGTCGTGAAACTTTGGAATGACAAAGAAAGCATTCAAGAAAAAGGACAAGAAAAAGAAATTGAAATGTTACTTGAACATTGGCAAGTAACAAAAGAAACTGAAAAAGATTTAGTGGTAACCATTGATACTGCATTCGATA---------ATGAAGCAACGATTAAGATACCTGCACGCTGTGTTGATAAATTAGAAAACGGACAATATAAAATATTTATTAAAAAGGGCGACCGCTTTTCGTATCTTGATAAAAGAAGTCCGGCAAACCATAAAATCATGGTTGGGGCAACCGTTGCTAAAAATTTACAGAGACAAAGTGGAAATATCCCTCTTTATTCTGACAATGTCAATATCAAACTCAAACAAGTTTTTCATGAGTTCGATTTCTTAATCAGTCAAGGACTTGGTTTTGATAGAAGTTTTGAAACCA---TAGGAGAAGAGTTAAAAGCCACCTATCACGAAACAGAAAAGCAATTAGATAAATTAGATACAAAGATTATAGAGTATGTCGAACAAAACAAAAGTTTAGATTATGTAGATACCACTATC------AGAGATACAATAAA---------------------------------------------------------------------------AAATCTAAAACTTGAACGTGATGATTTAAGAGATACTTTATATAAAGTCGATAAAAACATTCAATACTATCAAAAATCAGAACAGCGATTAGAAGCCTATCAAAAAA----ATCAAAGTC-CAAAACATAAAGCACGTGATGATGATTTTGAAATTT-----------------------AG 'Lactococcus raffinolactis Str_4877' CATATTATTTTTAATACAACAAATTCTACAACCCTTAAAAAATTC---------------------------------------AGATGGCAAAAGGGTACAACTCAAAGCCTACGAAATATTTCCGATAAACATGCGGACATTGCAGGTGCTAATATTTTAAGCAA---------CACAATGAAAAACTCGCATAAGAAATATTCTGCCTATCAACGAAAAAATAATTTTAAAATTGAAATAAAGGAACGTTTAAATTTTTTACTGAAGCACTCTACTTCTATTTATGATTTTAAAGCAAAAGCTAAAGCTCTCAATCTGATAATTGATGATACAGGTAAAAATGTAAAGTATCGT------------------CTTGCAGATATGGAACAAAAAAGAAATACACGTGATGATACACT---TTCAAAACGTG---------------------------------GAAAATATTCTATATCTAATATTGAAAAAATTGTCTCTAAAAA------------TGTTTCTGTATTCTCTCAATCTGAAATAAAAAATGAATATGAAAAATTTAAAGTAGAAAAAAGTGATGATTTTGAAATGAAAATTTTAGTTGAAGATTGGCAAGTAAAAGAGGAAACAAAAAATGGTATCTATATTGACATTGATTATGGACTACTTA---------ATAGTGGGGCTATATTAGTACCCTCACACCAAGTCAATAAACTTGATGATGGTAACTATAATATTTTTATCAAGAAAAAAGATTTTTTCTATTTCACAAATTCTGATGATGCGACTAAAAATAAATTTATGACTGGTAACATAGTTGCCAAGCAATTGTCTCATGATAATCAGCATCTAGTGCTTCACAAAAATCAATATATATCAAAACTTGATCAGATCATCAAAGATTTTGAGTATCTCTCTTTAAAAGGTGTTTCAACTGGTCAACAGTTTTCAGATT---TAAAAAATCAATTTGAAAATCAGGTTCATGAAACAGAAAAAGAGCTATCTGTTTTAGATGAAAAAATTTCTCGTATGAACAAAATCATCAGTGCAATTGATGGTCTCAATTCTGATGAT------TTGAGAAAAGTTGAAACTTCTGAAGCAATTTTATCAGACTTAAAAATTGATAAATCGACTAAGAGAGGTGATCTAATTAAAACTATCGAGGAAGTAAAGTTTGAAAGACAAGTGTTAAATGAACGATTTCAAGATATTGTTGAGAAATATAAAACCTATCAGGGTGTCAAAGAAAATGTTAGAGATCGAGAAAA-------TGATACTA-------------TCAAAAATAAAGAGGTCAAGAGAT-----------------------AA ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M58880] TITLE Lactococcus_lactis_Alignment_of_22_Relaxases_Exon1; LINK TAXA = Taxa2; DIMENSIONS NCHAR=495; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Enterococcus_faecalis_pTEF4 ATGGTGTATACAAAACATTTTGTTATTCATACATTTGATAAATTAAACAATGCTTGCTCATATATTGAGAATGCAGAAAAAACTGAAGTTACGAATGATAATCCGTCTGAACACTTGGAACATTTATTTCAATATATTGTGAATGACGATAAGACGTACATGAAAAAATTAGTTTCTGGGCATGGCATTGTAGATCCAACAAATCCTTATGAAGAATTTAAATTAACAAAATTACAAGCAGCAATTCAACGAAAAATCGGGTACACATTCGATCCAAAATCAGAAC---------GATTGCTTCCGCCAACGTTAACAGAATTAGAAAAAGGCAACGCCGTTTTAGCACACCATTTAATCCAATCCTTTTCTCCAGAAGATGATTTAACGCCAGAAAAAATACATGAAATAGGGTACAACACGGTGATGGAATTGACGGGTGGAGAGTATGAATTTGTGATCGCCACACATGTCGATAAAGAACATTTACACAAT Lactococcus_lactis_1064.C11 -------------------------------------------------------ATGACTGTGATTAACATGCCTAATAAATCGAAAGGA--ACATTACACAGTAAACAAGGACTTTCTAGCGCTTTAAAATATATTACTGACCCACAAAAAACAAATAACGGTGAATTAGTATCAGGACAAAACATAAACATTCCAAGCAATGCCTATGATGAAATG------------------------------------------------------------------TTACTGACAAGAGAAATGGCAATTTTAGCTGGTAATCAACCAAAAGAAAATGAACGATTTGGTTTTCATTTTGTACAATCTTTTTCGCCAGAAGATAATTTAACACCAGAACAAGTGCATGAGATTGGCTTAAAAACCATGAAAGCTTATCTAGGCGAATCCGTAGAATTTGTTATTGCAACACATACCGACAAAGAACACTTACACAAC Lactococcus_lactis_1AA59 -------------------------------------------------------ATGACAGTCATTAAAATGCCAAAACAATCGAACGGA--ACGGTTCATTCTTCAAAAGATTTAAACCAACTCATTGATTATGTGATGAACCCTGAAAAAACAAATGACTTTGAATATGTTTCCGGTCAAAATATTTTAGATATTCACTCAACCTGTGATGAAATG------------------------------------------------------------------TTAGCGACACGAACAATGGCAAATGCTTTAAAAAACAAGCCACGAAAAAACGAAAGGTTTGGTTATCATTTTGTCCAATCTTTTTCTCCTGATGACCATTTAACGCCTGAACAAGCTCATGAAATTGGTTTAAAAACCATGAAAGAATATCTCGGAAATTCTGCGGAATTTATTATTGCCACTCATACTGATAAAGACCACTTGCATAAT Lactococcus_lactis_CF103 -------------------------------------------------------ATGACAGTCATTAAAATGCCAAAACAATCGAACGGA--ACAATTCATTCTTCAAAAGATTTAAACCAACTCATTGATTATGTGATGAACCCTGAAAAAACAAATGACTTTGAATATGTTTCCGGTCAAAACATTTTAGATATTCATTCAACCTGTGATGAAATG------------------------------------------------------------------TTAGCGACACGAACAATGGCAAATGCTTTAAAAAACAAGCCACGAAAAAACGAAAGGTTTGGTTATCATTTTGTCCAATCTTTTTCTCCTGATGACCATTTAACGCCTGAACAAGCTCATGAAATTGGTTTAAAAACCATGAAAGAATATCTAGGAAGTTCTGCGGAATTTATTATTGCCACTCATACCGATAAGCCACACCTCCATAAT Lactococcus_lactis_CF112 ----------------------------------------------------------------------ATGCCCACGACTAAATCTTTAACTATTCAAAA-TGAAAGAAAC-CTTCAAAGAGCAATTAAATACATTTTAAATCCTGAAAAAACAAATGGTCAAACTTTGACAAGTGGTTACAAAATTAACTATGTCAAT---------------------------------------------------------AATGCAGACTTCGAGATGAAACTGACTCGGAAAATGGCCCGACTTGCGTTAGGACAATCAAATAAAAAATCAGACCAAGAAGTGGTCGCTCGTCATCTCATTCAAGCGTTTGACCCAAATGATAATCTCACTCCTGAAGAAATTCATGAGATTGGTCGACAAACTGTTTTAGAGCTTACAGGTGGAAATCATGAGTTTGTTATTGCAACACACGTCGACCAAGACCATATTCACAAT Lactococcus_lactis_DmW198 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAAGGGAACCTTTTCTAATGGAAAAGGAAAAGTTTTTGCACATCATATCATTCAATCTTTTGATCCAAAAGATAATATTACTCCTGAACAAGCTCATGAGATCGGTGAAAAGATGATGCTGCAATTTACTGAAGGGAAGCATGAGTTTGTCATTGCTACACACGTTGACCAAGATCACATTCATAAT Lactococcus_lactis_G50 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAAGGGAAACTTTTCTAATGGAAAAGGAGAAGTTTTTGCACATCATATCATTCAATCTTTTGATCCAAAAGATAATATTACTCCTGAACAAGCTCATGAGATCGGTGAAAAGATGATGCTGCAATTTACTGAAGGGAAGCATGAGTTTGTCATTGCTACACACGTTGACCAAGATCACATTCATAAT Lactococcus_lactis_HP -------------------------------------------------------ATGACAGTGATTTATATGCCAAAACAATCGAACGGA--ACGGTTCATTCCGCAAAAGATTTAAAACAACTCATTGATTATGTGATGAACTCCGAAAAAACAAATGACTTTGAATATGTTTCCGGTCAAAATATTTTAGATATTCATTCAACCTGTGATGAAATG------------------------------------------------------------------TTAGCGACACGAACAATGGCAAATGCTTTAAAAAACAAGCCACAAAAAAATGAAAGGTTCGGTTATCATTTTGTCCAATCTTTTTCTCCTGATGACCATTTAACCCCTGAACAAGTTCATGAAATTGGTTGTAAAACCATGAAAGAATATCTCGGAAGTTCTGCGGAATTTATTATTGCTACTCACACCGATAAGCCACACCTCCATAAT Lactococcus_lactis_KLDS ATGGTTTACACGAAACATTTTGCGATTCACATGATTGATCGCTTGCGCAATTCCAAAGATTATATTGAGAACGCCGCAAAGACCTTGGTTGAAAAATCAGAAGTAACAGGGCATTTGGATAATCTGTTTCCTTACATGATGAATGATGCCAAGACTTTTGCTAAACAGTTGGTCTCAGGTTACATGATTCATAATGTCTATGAAGCCTCGGAAGAGTTCATTGCGACCAAACAACTTGCGGCAAAAGAAAATGGCGAGCATTTTGTCTTTAATCCTAAAACCAAGCGACTGGAGTTTTCCTTGAAAAGTTTGGAGCAAGCGAAAAATGGTAAACAAGCGGTGCTGGCTTATCACTTGATTCAGTCTTTTTCTCCTGAAGACGGTTTAAGCCCTGAAGAAGTTCATGAGTTGGGCCGACAAACGATTCTAGAATTAACAGGTGGGGAGTATGAGTTTGTCATTGCGACGCACGTTGATAAAGCCCATTTGCATAAT Lactococcus_lactis_LMG9447 ---------------------------------------------------------------ATGGTTGTTGTTCCAAAACCTAAGC------AAATTCGTTCAGAGAAAGCACTAAAAAGTGCTGTTAAATATATTTTAAATCCTGATAAAACCGATGAACAAGTTTTAACAAGTGGCTATCATATTTCTAATTTAAACTATGCGGATGTTGAAATG---------------------------------------------------------------------AATTACACCAGAATATTGGCTAGAAAAATGGTTGGACGACAAAAAAAGCAAGTTTTAGCTCATCACTTAGTTCAATCTTTTCGTCCAGAGGATGGCTTATCTGCGGAAGAAATTCATCAGATTGGAAGAGAATGGATAGAGGAGTTGACCGGTGGAAGTCATGAATATATTATTGCAACCCACGTTGACAAAAATCATATTCACAAC Lactococcus_lactis_p275D -------------------------------------------------------ATGACAGTGATTTATATGCCAAAACAATCGAACGGA--ACGGTTCATTCCGCAAAAGATTTAAAACAACTCATTGATTATGTGATGAACTCCGAAAAAACAAATGACTTTGAATATGTTTCCGGTCAAAATATTTTAGATATTCATTCAACCTGTGATGAAATG------------------------------------------------------------------TTAGCGACACGAACAATGGCAAATGCTTTAAAAAACAAGCCACAAAAAAATGAAAGGTTCGGTTATCATTTTGTCCAATCTTTTTCTCCTGATGACCATTTAACCCCTGAACAAGTTCATGAAATTGGTTGTAAAACCATGAAAGAATATCTCGGAAGTTCTGCGGAATTTATTATTGCTACTCACACCGATAAGCCACACCTGCATAAT Lactococcus_lactis_pAF12 -------------------------------------------------------ATGACTGTGATTAACATGCCTAATAAATCCAAAGGA--ACATTACACAGTAAACAAGGACTTTCTAGTGCTTTAAAATATATTATTGACCCTCAAAAAACAAATAACGGTGAATTAGTATCAGGACAAAATATAAACGTTCCAAGCAATGCCTATGATGAAATG------------------------------------------------------------------TTACTGACAAGAGAAATGGCAATTTTGAGTGGAAAAAAACCAAGAGAAAATGAAATTTTTGGTTATCATTTCACACAATCTTTTTCGCCAGAAGATAATTTAACACCAGAACAAGTGCATGAAATTGGATTAAAAACCATGAAAGCCTATCTAGGCGAATCCGCAGAATTTGTTATCGCCACACATACCGACAAAGAACACTTACACAAC Lactococcus_lactis_pAH82 -------------------------------------------------------ATGACAGTGATTTATATGCCGAAACAATCGAACGGA--ACGGTTCATTCTTCAAAAGATTTAAACCAACTCATTGATTATGTGATGAACCCTGAAAAAACAAATGACTTTGAATATGTTTCCGGTCAAAACATTTTAGATATTCATTCAACCTGTGATGAAATG------------------------------------------------------------------TTAGCGACACGAACAATGGCTATCGCTTTAAAAAACAAGCCACGAAAAAATGAAATTTACGGTTATCATTTTGTCCAATCTTTTTCTCCTGATGACCATTTAACCCCTGAACAAGTTCATGAAATTGGTTGTAAAACCATGAAAGAATATCTCGGAAATTCTGCGGAATTTATTATTGCTACTCATACCGATAAGCCACACCTCCATAAT Lactococcus_lactis_pCV56A -------------------------------------------------------ATGACCGTAATTTATATGCCGAGAGATACAAGTGGA--GTAATTCATAGTCAAGGGCAACTCTCACGAGCGCTGAATTATATTGTCAATCCAGAAAAAACAAAAGGTGGAGAGTTAGTATCAGGTCAAAATATAAACGTGCCAAGCAATGCCTATAATGAAATG------------------------------------------------------------------TTACTGACAAGAGAAATGGCAATTTTAGCTGGAAATCAACCGAAAGAAAATGAACGATTTGGTTTTCATTTTGTACAATCTTTTTCGCCAGAAGATAATTTAACACCTGAACAAGTTCATGAGATTGGATTAAAAACCATGAAAGCCTATTTAGGCGAATCCGCAGAATTTGTTATCGCCACACATACCGACAAAGAACACTTACACAAC Lactococcus_lactis_pIL6 -------------------------------------------------------ATGACCGTAATTTATATGCCGAGAGATACAAGTGGA--GTAATTCATAGTCAAGGGCAACTCTCACGAGCGCTGAATTATATTGTCAATCCAGAAAAAACAAAAGGTGGAGAGTTAGTATCAGGTCAAAATATAAACGTGCCAAGCAATGCCTATAATGAAATG------------------------------------------------------------------TTACTGACAAGAGAAATGGCAATTTTAGCTGGAAATCAACCGAAAGAAAATGAACGATTTGGTTTTCATTTTGTACAATCTTTTTCGCCAGAAGATAATTTAACACCTGAACAAGTTCATGAAATTGGATTAAAAACCATGAAAGCCTATCTAGGTGAATCCGCAGAATTTGTTATCGCCACACATACCGACAAAGAACACTTACACAAC Lactococcus_lactis_pJM4A -------------------------------------------------------ATGACAGTGATTTATATGCCAAAACAATCGAACGGA--ACAGTTCATTCTTCAAAAGATTTAAACCAACTCATTGATTATGTGATGAACCCTGAAAAAACAAATGACTTTGAATATGTTTCCGGTCAAAACATTTTAGATATTCATTCAACCTGTGATGAAATG------------------------------------------------------------------TTAGCGACACGAACAATGGCAAACACTTTAAAAAACAAGCCACAAAAAAATGAAAGGTTCGGCTATCATTTTGTACAATCTTTTTCTCCTGATGATCATTTAAC-CCTGAACAAGTTCATGAAATTGGTTTAAAAACCATGAAAGAATATCTAGGAAGTTCTGCGGAATTTATTATTGCCACTCATACCGATAAGCCACACCTCCATAAT Lactococcus_lactis_pNZ712 -------------------------------------------------------ATGACAGTGATTTATATGCCGAAACAATCGAACGGA--ACGGTTCATTCTTCAAAAGATTTAAACCAACTCATTGATTATGTGATGAACCCTGAAAAAACAAATGACTTTGAATATGTTTCCGGTCAAAACATTTTAGATATTCATTCAACCTGTGATGAAATG------------------------------------------------------------------TTAGCGACACGAACAATGGCTATCGCTTTAAAAAACAAGCCACGAAAAAATGAAATTTACGGTTATCATTTTGTACAATCTTTTTCTCCTGATGACCATTTAACCCCTGAACAAGTTCATGAAATTGGTTTAAAAACCATGAAAGAATATCTCGGAAATTCTGCGGAATTTATTATTGCTACTCATACCGATAAGCCACACCTCCATAAT Lactococcus_lactis_pRS01 ATGGTTTACACAAAACACATTATTGTTCATAAATTAAAACATTTACGCCAGGCAAAAGACTATGTAGAAAATGCGGAAAAAACTTTGGTGAATGAAAGTA---ACGAAGATCATCTCACAAATCTTTTTCCTTATATTTCAAATCCAGACAAGACAATGAGTAAGCAACTTGTTTCTGGTCATGGTATCACAAATGTTTATGATGCGGCCAATGAATTTATTGCGACAAAAAAATTAAAAGCACTATCCAAAGGAACTGACTTTAATTTTGATCCGCAAACT------------GGAAAGGTAAGATTCAATGTAGAAAGCTTAGAGAAAAATAATGCGGTGCTTGGTCATCACCTCATCCAATCATTTTCTCCTGATGACAATCTAACTCCTGAACAAATTCATGAAATAGGTCGTCAAACCATATTAGAATTTACAGGTGGCGAATATGAATTTGTGATTGCAACCCACGTCGATCGTGAACACATCCATAAC Lactococcus_lactis_pSK11P -------------------------------------------------------ATGACCGTAATTTATATGCCGAGAGATACAAGTGGA--GTAATTCATAGTCAAGGGCAACTCTCACGAGCGCTGAATTATATTGTCAATCCAGAAAAAACAAAAGGTGGAGAGTTAGTATCAGGTCAAAATATAAACGTGCCAAGCAATGCCTATAATGAAATG------------------------------------------------------------------TTACTGACAAGAGAAATGGCAATTTTAGCTGGAAATCAACCGAAAGAAAATGAACGATTTGGTTTTCATTTTGTACAATCTTTTTCGCCAGAAGATAATTTAACACCTGAACAAGTTCATGAAATTGGATTAAAAACCATGAAAGCATATCTAGGTGAATCCGCAGAATTTGTTATCGCCACACATACCGACAAAGAACACTTACACAAC Lactococcus_lactis_pUC063C -------------------------------------------------------ATGACAGTGATTTATATGCCGAAACAATCAAACGGA--ACAATTCATTCTTCAAAAGATTTAAGACAACTTATTGATTATGTGATAAACCCTGAAAAAACAAATGATTTTGAATATGTCTCCGGTCAGAATATTTTAGATGTTCAATCGACTTGTGATGAAATG------------------------------------------------------------------TTAGCCACAAGAACAATGGCAAATGCTTTAAAAAACAAGCCACGAAAAAATGAAAGGTTCGGCTATCATTTTGTCCAATCTTTTTCTCCTGATGATCATTTAACCCCTGAACAAGTTCATGAAATTGGTTGTAAAACCATGAAAGAATATCTTGGAAATTCTGCGGAATTTATTATTGCCACTCATACCGATAAGCCACACCTCCATAAT Lactococcus_lactis_pUC77B -------------------------------------------------------ATGACAGTCATTAAAATGCCAAAACAATCGAACGGA--ACGGTTCATTCTTCAAAAGATTTAAACCAACTCATTGATTATGTGATGAACCCTGAAAAAACAAATGACTTTAAATATGTTTCCGGTCAAAACATTTTAGATATTCATTCAACCTGTGATGAAATG------------------------------------------------------------------TTAGCGACTCGAACAATGGCAAATGCTTTAAAAAACAAGCCACGAAAAAATGAAATTTACGGTTATCATTTTGTCCAATCTTTTTCTCCTGATGACCATTTAACGCCTGAACAAGCTCATGAAATTGGTTGTAAAACCATGAAAGAATATCTTGGAAATTCTGCGGAGTTTATTATCGCCACTCATACTGATAAAGACCACCTGCATAAT 'Lactococcus raffinolactis Str_4877' ------------------ATGCAAATAAAAACACCTGAACGTTTAACAAGGTCTGTCAAATATATTTTAAACCCTAAAAAAACAAATGTACCTTATGTAGAA------------ACTGAAAAAGATTTTCCAGTCACAT---TTACTGAAGATAAAAAAATGATGCAATTGGTTTCAGGGCATCAAATTTCAAATGTAAATTATGCTGATCAAGAATTTTTTCTAACAAAGATAATGGCT------------------------------------------------AATGCTAGCAATGGCAATCCTGATAATTCTGACATGAACAATCCTAATCGAGTAATGGCACATCATATTGTGCAATCATTTGCCCCTGATGAAAACTTAACTCCTGAAGAAATTCATGAACTAGGGAGAAAAACAGTTTTAGAATTGACTGGTGGCGATCATGAGTTCATAGTAGCAACTCATGTTGACCAAGATCATATCCATAAT ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M58877] TITLE Lactococcus_lactis_Alignment_of_17_Full_Length_Relaxases; LINK TAXA = Taxa1; DIMENSIONS NCHAR=1850; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800 1810 1820 1830 1840 1850] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Enterococcus_faecalis_pTEF4 ATGGTGTATACAAAACATTTTGTTATTCATACATTTGATAAATTAAACAATGCTTGCTCATATATTGAGAATGCAGAAAAAACTGAAGTTACGAATGATAATCCGTCTGAACACTTGGAACATTTATTTCAATATATTGTGAATGACGATAAGACGTACATGAAAAAATTAGTTTCTGGGCATGGCATTGTAGATCCAACAAATCCTTATGAAGAATTTAAATTAACAAAATTACAAGCAGCAATTCAACGAAAAATCGGGTACACATTCGATCCAAAATCAGAACGATTGC---------TTCCGCCAACGTTAACAGAATTAGAAAAAGGCAACGCCGTTTTAGCACACCATTTAATCCAATCCTTTTCTCCAGAAGATGATTTAACGCCAGAAAAAATACATGAAATAGGGTACAACACGGTGATGGAATTGACGGGTGGAGAGTATGAATTTGTGATCGCCACACATGTCGATAAAGAACATTTACACAATCATATTATTTTTAGTTCAACCAATTTAAAAACAGGTAAAGCCTTTCGCTGGCAAAAAG---------------------------------------GAACCAAAAAAGTCTTTGAACAAATTTCGGATAAAATTGCAGCGAAGGAAGGCGCAAAAATTATTGA---------AAAATCACCGAAGCAAACTCATACAAAATATACAAAATGGCAAACAGAGTCCATTTATAAACAAAAAATAAAAAGTCGGTTAGACTTTTTATTAGAACAAAGTTCTTCAATTAATGACTTCCTAGAAAAAGCAGAAGCTTTGAATTTATCGGCAGACTTTTCTAAT-AAGTGGA------------------CGATCTATCGATTGCTTGACGAACCACAAATAAAAAATACTCGTAGTCGAAGCTTGTCAAAAAGTGACCC------------------------------CACTAGATATAATTATGAAAAGATTATTGAACGATTGAAAGAAAATAAAAAC------------GTTCTAACAGTGGAAGAATGTGTCAAAAGATACG------AAGAAAAAAATGAACAAGAAAAAAATAATTTTGACTATCAATTTACAATAGAACCATGGCAACTGTCTCACAAAACAGAAAGAGGATATTATATAAATATCGATTATGGCTATGGTAAT---------TCTGGAAAGCTCTTTGTAGGAGGGTATAAGGTTGATCCATTAGACAACGGTAATTACAATATCTATATTAAAAGAAATGAGTATTTTTATTTTATGAGCGACAAGGATGCT-ACTAAAAGTAAATACTTAATAGGGGCTTCGTTGATTAAACAATTACGACTGTATAATGGACAAACACCACTGAAAAGAGAACCTGTGATGCAAACCATTGATGAATTAGTTAGTGCCATTAACTTTTTAGCGGCGAATGAAATCGAGGACACAAGACAACTAAAATTA---TTAGAAGAAAAATTAGAAGTTGCTTTTCTTGAAGCAGAAAAAACTTTAGAGACTCTTGACGAGAAGATGTTAGAGCTGCACCAATTAAGTAACCTCTTATTAGAAAATGAACTGCAGGGAG----ATCCAGAGTT---AATTCAGAAAAAATTGAAAACATTGTTACCAGACGCAACG--------CTTGCGGAATTTTCTTATGAAGATGTTCGAGGAGAAATAGAAGCAATTAAAACCAGTCAAACTTTGTTAGAGAGTAAACTGGAACGAACTCGAAATGAAATTAATCAGC--TTCATGAAATACAAG-------CCGTAC--AGGAAAAAGAGCCAGAGAAGCAAACCGACATTAAGCCCAAACTATAA- 'Lactococcus lactis 1064_C11' ------------------------------------------------ATGACTGTGATTAACATGCCTAATAAATCGAA---------AGGAACATTACACAGTAAACAAGGACTTTCTAGCGCTTTAAAATATATTACTGACCCACAAAAAACAAATAACGGTGAATTAGTATCAGGACAAAACATAAACATTCCAAGCAATGCCTATGATGAA------------------------------------------------ATGTTACTGACAAGAGAAATGGCAATTTTAGCTG------------------GTAATCAACCAAAAGAAAATGAACGATTTGGTTTTCATTTTGTACAATCTTTTTCGCCAGAAGATAATTTAACACCAGAACAAGTGCATGAGATTGGCTTAAAAACCATGAAAGCTTATCTAGGCGAATCCGTAGAATTTGTTATTGCAACACATACCGACAAAGAACACTTACACAACCATATTATTTTGAATGCCACAAATCCAAAGACACTCAAAAAATTTCAACAATCTAAAAGCCAGCTAGAAGAATTGAAAGAAATATCTGAT---------------------------------------GTTATTTCTAAAGAGTATGGCTGTAAAATTATTGACCGTTCTTTAAA---------AAATTCTCACAAAAAATATCAAGTCTACCTTGCTAAAAATTCTTATCGAAAAGAAATAAAAAGCAAAATTAAATTCTTACTTTCTCATGCCAGCAATTGGACCGACTTTAAAAATAAAGCAAATGCTTTAGGGCTGATTGTTGATGATAAAGGA-AAGTACA------------------CCACTTACCAATTGAGTG-GCACTAGTCAAGAAA--GAAAAGTCAGAGATAGAAGCCTAAAAAA------------------------------------TCAAGCATTCATGAAAGAAGCCATTTCTGAACGCTTGAAAGAAAATGAAGTG------------GTTTATACAGAATCAGAAGTCAAAGAACTATGGGCAGAGAATCAAACCATTCAAGACAAGGAACAAGAAACAGAAATTGAAATGCTTATAGAAGATTGGCAAGTCGAAAAAGAAACAGCCGATTATTTATATGTGAATATCAACATTGGTTTAGAAAGAGCGCAACGAAAATCCGCAATCAAAATTCCAGCACGTTGTGTGGACAAATTAGAAAATGGCAATTACCAAGTTTTTCTCAAAAAACAAGACCGCTTTTATTTTGTTGATAGTAAAAATCCA-GAGAACAACAAAATTATGCTTGGAAAAACCGTTGCGAAAAACCTACAAAATCAAAGCGGAAGCGTACCGCTTTATTCTAACAATACCAAAATCAAGTTGAAACAACTGTTTAATGAGTTTGATTTTCTTATTTCTAAAGGATTAGATTTTGATACTTCTTTTGAAGCT---ATCGGAAAAGAATTAGAACAAACCTATTACCAAACAGAAAGCATTTTAGAAAACCTAGATAAGAAAATTCTTGAGTATGTCGAAGAAAATAAAGCCTATGCACGACCAAACACAAGAATATTAAAAACAATTGAA------------------------------AACCTACAA------------AAGGAACGAACAGACT---------TACACAAGACCTTAAAACAAGTCGAA-----AAAGAAATGCTTTACTATGACAAGTCCGTTGACCGTTACGAAGATTACCAGCAAGAACACACCAAAAATAAAAGCCACCATTC---------CCCACGTTTGTAA---------------------------- Lactococcus_lactis_1AA59 ------------------------------------------------ATGACAGTCATTAAAATGCCAAAACAATCGAA---------CGGAACGGTTCATTCTTCAAAAGATTTAAACCAACTCATTGATTATGTGATGAACCCTGAAAAAACAAATGACTTTGAATATGTTTCCGGTCAAAATATTTTAGATATTCACTCAACCTGTGATGAA------------------------------------------------ATGTTAGCGACACGAACAATGGCAAATGCTTTAA------------------AAAACAAGCCACGAAAAAACGAAAGGTTTGGTTATCATTTTGTCCAATCTTTTTCTCCTGATGACCATTTAACGCCTGAACAAGCTCATGAAATTGGTTTAAAAACCATGAAAGAATATCTCGGAAATTCTGCGGAATTTATTATTGCCACTCATACTGATAAAGACCACTTGCATAATCATATTGTGCTTAATGCAACTGACCCTTTGACTTTAAATAAATTTCAACAATCAAAAAATGATTTGGAACGATTGAAAGAAATTTCTGAT---------------------------------------AAGATTTCTAAAGAATATGGTTGTAAAATTATTGACCGTCCTGAACAAAAATTAGGAAACTCTCACAAAAATTATTTGGTCTATCTTGCTCAAAATTCTTACCGGAAAGAGATTAAAAACAAACTTGAATTTTTAATGAACCATTCTCACACTTGGGAAGATTTTAAAACAAAAGCAAGAGCCTTAAATTTAAAAGTGGACGACACAAAA-AAATATA------------------CCACTTATCTTTTAGAGGGAAGCGAACA-AACCA--AAAAAATTAGAGATAGAAGTTTAAAAAA------------------------------------TGATAAATTTTTAATGGAAAATCTCAAAGAACGGATAGAAAGAAACACCATT------------GGTTATTCCGTTGAGGAAGTCGTGAAACTTTGGAATGACAAAGAAAGCATTCAAGAAAAAGGACAAGAAAAAGAAATTGAAATTTTACTTGAACATTGGCAAGTAACAAAAGAAACTGAAAAAGATTTAGTTGTAACCATTGATACTGCATTTGATAAT---------GAAGCAACGATTAAGATACCTGCACGCTGTGTTGACAAATTAGAAAACGGACACTATAAAATATTTATTAAAAAGGGCGACCGCTTTTCGTATATTGATAAAAGAAGTCCG-GCAAACCATAAAATCATGTACGGGGCAACCGTTGCTAAAAATTTACAAAGACAAAGTGGAAATATCCCTCTTTATTCTGACAATGTCAATATCAAACTCAAACAAGTTTTTCATGAGTTCGATTTCTTAATCAGTCAAGGGCTTGGTTTTGATAGAAGTTTTGAAACC---ATAGGAGAAGAGTTAAAAGCCACCTATCAAGAAACACAACATCAATTAGACAAGCTAGACACAAAGATTTTAGAATACGTGAAAACAACAAAAACGTTACCTTATGAAGATACCTCAATCAGAGATACCATTAAA------------------------------AACTTAACA------------AAAGAACGTGATGATT---------TGCGAGATACTTTATATAAAGTCGAT-----AAAAACATTCAATACTATCAAAAATCAGAACAGCGATTAGAAGCCTATCAAAAAAATCAAAGTCCAAAAAATAAAGCACGTGA---------TGATGATTTTGAAATTT------AG---------------- Lactococcus_lactis_CF103 ------------------------------------------------ATGACAGTCATTAAAATGCCAAAACAATCGAA---------CGGAACAATTCATTCTTCAAAAGATTTAAACCAACTCATTGATTATGTGATGAACCCTGAAAAAACAAATGACTTTGAATATGTTTCCGGTCAAAACATTTTAGATATTCATTCAACCTGTGATGAA------------------------------------------------ATGTTAGCGACACGAACAATGGCAAATGCTTTAA------------------AAAACAAGCCACGAAAAAACGAAAGGTTTGGTTATCATTTTGTCCAATCTTTTTCTCCTGATGACCATTTAACGCCTGAACAAGCTCATGAAATTGGTTTAAAAACCATGAAAGAATATCTAGGAAGTTCTGCGGAATTTATTATTGCCACTCATACCGATAAGCCACACCTCCATAATCATATTGTTTTAAATGCAACCAACCCCTTGACCTTAAACAAATTTCAACAAAATAAAAATGATTTGGAACGATTGAAAGAAATTTCTGAT---------------------------------------AAGATTTCTAAAGAATATGGTTGTAAAATTATTGACCGTCCTGAACAAAAATTAGGAAACTCTCACAAAAATTATTTGGTTTATCTTGCTCAAAATTCTTACCGGAAAGAGATTAAAAACAAACTTGAATTTTTAGTGAGCCATTCTCACACTTGGGAAGATTTTAAAACAAAAGCAAGAGCCTTAAATTTAAAAGTGGACGACACCAAAAAAATATA------------------CCACTTATCTTTTAGAGGGAAGCGAGCA-AACCA--AAAAAATTAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Lactococcus_lactis_CF112 ------------------------------------------------------------------ATGCCCACGACTAA------ATCTTTAACTATTCAAAATGAAAGAAACCTTCAAAGAGCAATTAAATACATTTTAAATCCTGAAAAAACAAATGGTCAAACTTTGACAAGTGGTTACAAAATTAACTATGTCAATAATGCAGAC---------------------------------------------------------TTCGAGATGAAACTGACTCGGAAAATGGCCCGACTTGCGTTAGGACAATCAAATAAAAAATCAGACCAAGAAGTGGTCGCTCGTCATCTCATTCAAGCGTTTGACCCAAATGATAATCTCACTCCTGAAGAAATTCATGAGATTGGTCGACAAACTGTTTTAGAGCTTACAGGTGGAAATCATGAGTTTGTTATTGCAACACACGTCGACCAAGACCATATTCACAATCATATTATTTTTAATGCGACCTCTTCAGTTGATTTAAAAAAATTTCGTTGGCAAAAAGGGACAACAAATCTTCTGAGAAATATTTCTGACAAAATAGCAGA---------------------------------------TTATCATGGAGCAATGATTTTAGA------TGCTCCAA---AAAGAACCTCTCATGCCAAGTATGAAAAATACAAACGAGAAAATAATTATCGTCAAATTTTAAAAGAGCGATTAGATTTTTTGTTAAGACACTCTTTAAATTTTGAGGACTTCAAACAAAAAGCACATGCGCTTAATATCCAAGTTGACGAGCATCAC-AAGTCAAAAGATTATGGCCAAGTCATCAATTATCAACTCACAGATTTGCCTCAACAACGACCTGCACGTGATTATACTTTGAACAAAAAAAGTCGAAAATA-------------------------------TTCTT--TTGATAAACTAGTAGAGCGCTTTGAAAATAATCATATC------GAAGGGGTTTATCATGTTGACCAAATCAAACAAGCCTTTC------AAGATGAGCATCAAAAAATTGAAAAAGAGCCTGATCTTGAGTTCGTGATTGAGCCCTGGCAAATTGAAAAAGATACAATGAATGCTATTTATGTTCGTATTGAATATGGCCGCTATGAG---------GAAGGTGTGATTAAAATTCCTGATTATAAATTAGATAAGCTAGAAGACGGTTCTTACAAGGCTTATTTTAAAAATAAAGACACATTTTATTTTATTAATGATGAAGTA----AATAAAAGTAAGTTTTTAAAAGGTTCTGTGCTTTCTAAAATTTTATCTGGTGAAAGTGGTACAATTCTTCAGCGCAAAAATTCAGCCATTCAAAATGTACGCGAAATGGTTGCTGCGTTGAATTTAATTTCAGAACGCCAGGTTAACGGTGAAAAAGCAGTTGAAGTG---CTTGGTCAAAAATTTATGGATGATGTGGAACAAATTAAGCAAGCCCTACAAAATTTAGATGCTCATATTTTAAAACAGAATGAGCAATTAAAATACGAAAATCCA---------------------------------ACTGAAGAGAATAAACTCAAAATTAAAGCTCTTCAACTTGAGCGAAAAGATTTGCAAGCTCAATATCAAAAAGTGATTAAAAAGATGAAAACTTATGATGCAGGACAA--------------GATATT-------ATGAACGAAAAAATTCATGA-----------AAATGTC----------CAGA--CTGCAGATAAGGATA---------------TGCAAA--TATAA----- Lactococcus_lactis_DmW198 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATG------------AAGGGAACCTTTTCTAATGGAAAAGGAAAAGTTTTTGCACATCATATCATTCAATCTTTTGATCCAAAAGATAATATTACTCCTGAACAAGCTCATGAGATCGGTGAAAAGATGATGCTGCAATTTACTGAAGGGAAGCATGAGTTTGTCATTGCTACACACGTTGACCAAGATCACATTCATAATCATATTATTTTTAATGCGACTTCAAGCACTGATTTTAGAAATTATCGATGGCAAAAAGACACGCTACAGTTAGCACGTGAACTCTCTGATAAAATTGCAGA---------------------------------------AAAACATGGCGCAATCTTAGAAAA------AACAAAACCCTATCAAAATTATCATCGAAACTATCAAAAATATTTATCAGATAATCCTATACGACCCGAACTCAAACAACGTTTAAATTTTCTTTTAAAACATTCTCTTAGTCTATCTGATTTTCTTCAAAAAGCAAAGTTACTTCATGTTGAAGTTGATGCATCTGGA-AAATACA------------------CGACTTATCGATTGACGGATTTTGATCAAAAACGTCCGATTCGAGATTGTAGTTTAATCTCAAAAGAAGATAAAAAAAGAATGGATGCTCATCCTGAAAAAAGAATCTTCTCAAAAGAAGAAATTGAGAGACGGTGCGAAAAAAATGTGCAGAATCATTCAATTGTCTTTGGTCAGTCAGAAATTTTTAAAGAGTATC------AAAAACAACAAAAGTGGTTTAAAGAAAATTCAGATATTCGATTAGTCATCGAACCTTGGCAAATTGAATCGAAAACACCTGATGCCATTCGAGTTTTTGTGGAGGCAGGGCATCGGA------------AAGGAACTGTAAAAATTGAATCGACTTTTTTTGATAAATTAGGAGAAAATTTTG---AGCTTCATCTTAATAATTTTTCAAAATTTAAGTTTTTAGACGAGAGAAACCAAAACTATTCATCTATTCTTTT-AGGAAAAGAAATTATCGGTCAACTCTCAAAAGAAAATGAACGTATCCCTGCTAGAAAAAATTATGGAATGAACTATGTGCATGACTTATTTGAAGCAACAAACTTACTAAGTCGACATGGAATTAGTGGGCAAGAATCTTTCAAACAT---CTCGGAGAAGAGTTTATCACGAATATGGAAAAAGTAGAATTAGCACTTGAACAATTAGATAAAGAAATACTTACTCAAACAGAACGAGTGAAATTCAATCAAGGG---------------------------------AATCCTCAACTCATTGAACAGCTCAAACAATTACAAAATGAACATAAATCTTTAGAATCAGCCTACAAAGAACTCACAGATGAACTTGAAATTTACGATCAAATTGAAAACTTGCAAGCTCAAAAAAC-------AAGAAAAACGAACTTCACAAGA---ACAGGAGAAGCAA------CCGCATGT--CAGAAGATAACTTTC---------------AATCCCTCGATAAATTAG Lactococcus_lactis_HP ------------------------------------------------ATGACAGTGATTTATATGCCAAAACAATCGAA---------CGGAACGGTTCATTCCGCAAAAGATTTAAAACAACTCATTGATTATGTGATGAACTCCGAAAAAACAAATGACTTTGAATATGTTTCCGGTCAAAATATTTTAGATATTCATTCAACCTGTGATGAA------------------------------------------------ATGTTAGCGACACGAACAATGGCAAATGCTTTAA------------------AAAACAAGCCACAAAAAAATGAAAGGTTCGGTTATCATTTTGTCCAATCTTTTTCTCCTGATGACCATTTAACCCCTGAACAAGTTCATGAAATTGGTTGTAAAACCATGAAAGAATATCTCGGAAGTTCTGCGGAATTTATTATTGCTACTCACACCGATAAGCCACACCTCCATAATCATATTGTTTTAAATGCAACCAACCCCTTGACCTTAAACAAATTTCAACAAAATAAAAATGATTTGGAACGATTGAAAGAAATTTCTGAT---------------------------------------AACATTTCTAAAGAATATGGCTGTAAAATTATTGTCCGTCCTGAACAAAAACTAGGGAACTCTCACAAAAATTATTTGGTTTATCTTGCTAAAAATTCTTACCGAAAAGAGATTAAAAACAAACTTGATTTTTTAATGAACCATTCTCACACTTGGGAAGATTTTAAAGAAAAAGCAAGAGCCTTAAATTTAAAAGTGGACGACACAAAA-AAATATA------------------CCACTTATCTTTTAGAGGGAAGCGAGCA-AACCA--AAAAAATTAGAGATAGAAGTTTAAAAAA------------------------------------TGATAAATTTTTAAAAGAAAATCTCAAAGAACGGATAGAAAAAAATACCATT------------GGTTATTCAGTAGATGAAGTCGTGAAACTTTGGAAAGACAAAGAAAGCATTCAAGAAAAAGGACGAGAAAAAGAAATTGAAATTTTACTTGAACATTGGCAAGTAACAAAAGAAACTGAAAAAGATTTAGTTGTAACCATTGATACTGCATTTGATAAT---------GAAGCAACGATTAAGATACCTGCACGCTGTGTTGATAAATTAGAAAACGGACAGTATAAAATATTTATTAAAAAGGGCGACCGCTTTTCGTATCTTGATAAAAAAAGTCCG-GCAAACCATAAAATCATGTATGGGGCAACCGTTGCTAAAAATTTACAAAGACAAAGTGGAAATATCCCTCTTTATTCTGACAATGTCAATATCAAACTCAAACAAGTCTTTCATGAGTTCGATTTCTTAATCAGTCAAGGGCTTAGTTTTGATAGAAGTTTTGAAACC---ATAGGAGAAGAGTTAAAAGCCACCTATCAAGAAACACAACATCAATTAGACAAGCTAGACACAAAGATTTTAGAGTACGTGGAAACAACAAAAACCTTGCCTTATGAAGATACCTCTATCAGAGATACCATTAAA------------------------------AACTTAACA------------AAAGAACGTGATGATT---------TGCGAGATACTTTATATAAAGTCGAT-----AAAAACATTCAATATTATCAAAAATCAGAACAGCGATTAGAAGCCTATCAAAAAAATCAAAGTCCAAAACATAAAGCACGTGA---------TGATGACTTTGAAATTT------AG---------------- Lactococcus_lactis_KLDS ATGGTTTACACGAAACATTTTGCGATTCACATGATTGATCGCTTGCGCAATTCCAAAGATTATATTGAGAACGCCGCAAAGACCTTGGTTGAAAAATCAGAAGTAACAGGGCATTTGGATAATCTGTTTCCTTACATGATGAATGATGCCAAGACTTTTGCTAAACAGTTGGTCTCAGGTTACATGATTCATAATGTCTATGAAGCCTCGGAAGAGTTCATTGCGACCAAACAACTTGCGGCAAAAGAAAATGGCGAGCATTTTGTCTTTAATCCTAAAACCAAGCGACTGGAGTTTTCCTTGAAAAGTTTGGAGCAAGCGAAAAATGGTAAACAAGCGGTGCTGGCTTATCACTTGATTCAGTCTTTTTCTCCTGAAGACGGTTTAAGCCCTGAAGAAGTTCATGAGTTGGGCCGACAAACGATTCTAGAATTAACAGGTGGGGAGTATGAGTTTGTCATTGCGACGCACGTTGATAAAGCCCATTTGCATAATCATATTGTCTTTAACTCAACGAATGCGATGACGGGAAAACAGTTTGAGTGGCAGTTGCCGCGCTTA---------AAAAATGGCAAGACTAAAGATATGACTTATGAAGCTTTTCAAAAAATCTCGGATCGGATTGCCTCAAAGGCAGGTGCCAAAATCATTGA---------GTTCTCGCCTAAAAATTCTCATGCCAAGTACACCAAGTGGCAGACCGAAAATATTTTTAAATCACGGATTAAATCCCGTTTGGATTTTTTGTTGGAGCATTCCCTTGACTTAGATGATTTCAAAACAAAGGCTAAAGCTCTCAACTTAGCAGTGGATTTTTCGGGG-AAGTGGG------------------CAACCTATCGTTTGTTAGATGATGTGCAAGTGAGAAATACCCGCGGACGTAACTTGGTCAAGTCTGACCC------------------------------AGAGCGCTATAATCTGGATCGGATTGAAGCTCATCTGAAAAAGAATACGGGG------------ATGTTTTCGGTGGCAGATGTTGTCAATCAGTACG------AAGAAAAAATCGAAACCATTAAAAATGATTTCGATTATCAAGTGACGATTGAACCTTGGCAGATTGACCATGTGACGACCAAAGGACTTTATATCAATGTGGACTTTGGTCTCTCTCAA---------CATGGTGTCATCTTCATCGGTGCTTACAAGACCGACTTGCTAGAGGACGGTAATTATAATCTTTACCTCAAAACCAATGACTATTTTTACTTCATAGACATGGCAGGTGCA-GCCAATAATCGGTTTATGATGGGACCAACCCTCATGCGGCAGCTTAGCCTTTATAATGGCACTGTTCCTATCGCCAAAGAAAAAGTGATTTCGACGATTGACGAATTGACCGAGGCGATTAACTTTTTGGCGAGCCATGGTGTGACGGAGGGCGGCGAGCAACTGGTGCGATTAGAGCAGCAACTGCTCGAAGCGGTGCAAGAGGCAAAAAAACGACTGAAAGCATTAGAACAGAAAATCAGAGACTTGAATGTCTTAGCAAAAGAACGAATTGT------------------------CAGCAGT---AATGAAAGAACTA------------AAGACGAA----GAA--------CTTGAGCAAATTAAAA---------------ATCAAATTGCTTCGGTCAAGGTTAGCCAAAGATTGTTAAAAGGAAGGTACAATGAGACAATATCGCAAATTGATGAGT--ATCAAGAAATT-------CTACAAGCTA--GGAAAAATAAGGGAAAGTAA---------------------------- Lactococcus_lactis_LMG9447 ---------------------------------------------------------------ATGGTTGTTGTTCCAAA------ACCTAAGCAAATTCGTTCAGAGAAAGCACTAAAAAGTGCTGTTAAATATATTTTAAATCCTGATAAAACCGATGAACAAGTTTTAACAAGTGGCTATCATATTTCTAATTTAAACTATGCGGAT---------------------------------------------------------GTTGAAATGAATTACACCAGAATATTGGCT------------AGAAAAATGGTTGGACGACAAAAAAAGCAAGTTTTAGCTCATCACTTAGTTCAATCTTTTCGTCCAGAGGATGGCTTATCTGCGGAAGAAATTCATCAGATTGGAAGAGAATGGATAGAGGAGTTGACCGGTGGAAGTCATGAATATATTATTGCAACCCACGTTGACAAAAATCATATTCACAACCATATTATTTTTAATGCGACTTCAAGCGCTGATTTTAGAAATTATCGTTGGAAAAAAGACACACTACAATTAGCTCGTGAACTCTCTGATAAAATTGCTGA---------------------------------------AAAGCACGGTGCAATTTTAGAAAA------TACAAAACCCTATCAAAATTATCATCGGAACTATCAAAAATACTTATCAGAAAATCCAATTCGCCCCGAACTCAAACAACGTTTAAATTTTCTTTTGAAACATTCTCTTAGTCTTTCTGACTTTATTCAAAAAGCTAAACACCTTAACATTGAAGTCGATACATCTGGT-AAATACA------------------CGACTTACCGTTTGACTGATTTTGAGCAAAAACGTCCGATTCGAGATAGTAGTTTAATCTCAAAAGAAGATAAAAAAAGAATGGATGCTCACCCTGAAAAAAGAGTTTTCTCAAAAGAAGAAATTGAGAAACGATGCCAAAAAAATGTTAAAAATCATTCCATTGTTTTTGGTCAATCAGAAATGTTAAAAGAGTATC------AAAAACAACAAAAGTGGTTTAAAGAAAATTCAGACATTCGGTTAGTCATCGAACCTTGGCAAATTGAATCGAAAACACCTGATGCCATTCGAGTTTTTGTGGATGCAGGGCATCGGA------------AAGGAACCGTAAAAATTGAATCGACTTTTTTTGATAAAGTAGGAGAAAATTTTG---AGCTTCATCTTAATAATTTTTCAAAGTTTAAGTTTTTAGACGAGAGAAACCAAAACTACTCATCCATTCTTTT-AGGAAAAGAAATTATCGGTCAACTTTCAAAAGAAAATGAACGTATCCCTGCTAGGAAAAATTATGGAATGAACTATGTTCATGATTTATTTGAAGCCACAAACCTACTAAGTCGTCATGGAATTAGTGGACAAGAATCTTTCAAACAT---CTCGGAGAAGAGTTTATCACAAATATGGAAAAGGTGGAATTAGCCCTTGAACAATTAGATACAAAAATACTTGCTCAAACAGAGCAAGTGAAATTCAATCAAGGG---------------------------------AATCCTCAACTCATCGAACAGCTCAAACAATTACAAAACGAACGCAAATCTTTAGAAACAGCCTACAAAGAAATCACAGATGAACTTGAAATTTACGACCAAATCGAAAACTTGCAAGCTCAAAAACA-------AG-AAAAACAAAATTCACAGGA---ACAGGAGAATCAA------CCACATGC--CAGAAGATAA-------------------------------------- Lactococcus_lactis_pAF12 ------------------------------------------------ATGACTGTGATTAACATGCCTAATAAATCCAA---------AGGAACATTACACAGTAAACAAGGACTTTCTAGTGCTTTAAAATATATTATTGACCCTCAAAAAACAAATAACGGTGAATTAGTATCAGGACAAAATATAAACGTTCCAAGCAATGCCTATGATGAA------------------------------------------------ATGTTACTGACAAGAGAAATGGCAATTTTGAGTG------------------GAAAAAAACCAAGAGAAAATGAAATTTTTGGTTATCATTTCACACAATCTTTTTCGCCAGAAGATAATTTAACACCAGAACAAGTGCATGAAATTGGATTAAAAACCATGAAAGCCTATCTAGGCGAATCCGCAGAATTTGTTATCGCCACACATACCGACAAAGAACACTTACACAACCATATTATTTTGAATGCCACGAATCCAAAAACACTCAAAAAATTTCAACAATCTAAAAGCCAGCTAGAAGAATTGAAAGAAATATCTGAT---------------------------------------GTTATTTCTAAAGAGTATGGCTGTAAAATTATTGACCGTTCTTTAAA---------AAATTCTCACAAAAAATATCAAGTCTACCTTGCTAAAAATTCTTATCGAAAAGAAATAAAAAGCAAAATCAAATTTTTACTTTCTCATGCCAACAATTGGAACGATTTTAAAAATAAAGCAACTACTTTAGGGCTGATTGTTGATGATAAAGGA-AAGTACA------------------CCACTTACCAACTGAGTG-GCACTAGTCAAGAAA--GAAAAGTCAGAGATAGAAGCCTAAAAAA------------------------------------TCAAGCATTCATGAAAGAAGCCATTTCTGAACGATTGAAAGAAAATGAAGTG------------GTTTATACAGAATCAGAAGTCAAAGAACTGTGGGAAGATAATCAAACCATTCAAGACAAGGAACAAGAAACAGAAATTGAAATGCTTATAGAAGATTGGCAAGTCGAAAAAGAAACAGCCGATTATTTATATGTAAATATCAATATTGGTTTAGAAAGGGAGCAACGAAAATCTGCAATCAAAATTCCAGCACGTTGCGTTGACAAATTAGAAAATGGCAATTATCAAGTTTTTCTCAAAAAACAAGACCGCTTTTATTTTGTTGATAGTAAGAATCCA-GAGAACAACAAAATCATGCTAGGAAAAACCGTTGCGAAAAACCTACAAAATCAAAGCGGAAGCGTACCGCTTTATTCTAACAATGCCAAAATCAAGTTAAAACAACTGTTTAATGAGTTTGATTTTCTTATTTCTAAAGGATTAGATTTTGATACTTCTTTTGAAGCT---ATCGGAAAAGAATTAGAACAAACATATTACCAAACAGAAAGCATTTTAGAAAACCTAGATAAGAAAATTCTGGAGTATGTCGAAGAAAATAAAGCCTATGCACGACCAAACACAAGAATATTAAAAACAATTGAA------------------------------AACCTACAA------------AAGGAACGAGCAGACT---------TACACAAGACCTTAAAACAAGTCGAA-----AAAGAAATGCTTTACTATGATAAATCCGTTGACCGTTACGAAGATTACCAGCAAGAACACACCAAAAATAAAAGTCAACATTC---------CCCACGTTTATAA---------------------------- Lactococcus_lactis_pAH82 ------------------------------------------------ATGACAGTGATTTATATGCCGAAACAATCGAA---------CGGAACGGTTCATTCTTCAAAAGATTTAAACCAACTCATTGATTATGTGATGAACCCTGAAAAAACAAATGACTTTGAATATGTTTCCGGTCAAAACATTTTAGATATTCATTCAACCTGTGATGAA------------------------------------------------ATGTTAGCGACACGAACAATGGCTATCGCTTTAA------------------AAAACAAGCCACGAAAAAATGAAATTTACGGTTATCATTTTGTCCAATCTTTTTCTCCTGATGACCATTTAACCCCTGAACAAGTTCATGAAATTGGTTGTAAAACCATGAAAGAATATCTCGGAAATTCTGCGGAATTTATTATTGCTACTCATACCGATAAGCCACACCTCCATAATCATATTATTTTAAATGCCACGAATCCAAAAACACTCAAAAAATTTCAACAATCTAAAAGTCAGTTAGAAGAATTGAAAGAAATATCTGAT---------------------------------------GTTATCTCTAAAGAGTATGGCTGTAAAATTATTGACCGTTCTTTAAA---------AAATTCTCACAAAAAATATCAAGTCTATCTTGCGAAAAATTCTTACCGAAAAGAAATAAAAAGCAAAATCAAATTTTTACTTTCTCATGCAAACAGCTGGAACGATTTTAAAAATAAAGCAACTGCTTTAGGGCTGATTGTTGATGATAAAGGA-AAGTACA------------------CCACTTACCAATTGAGTG-GCACAAGTCAAGAAA--GAAAAGTTAGAGATAGAAGCCTAAAAAA------------------------------------TCAAGCATTCATGAAAGAAGCCATTTCTGAACGCTTGAAAGAAAATGAAGTG------------TTTTATACAGAATCAGAAGTCAAAGAACTATGGGAAGAGAATCAAACTATTCAAGACAAGGAGCAGGAAACCGAAATTGAAATGCTTATAGAAGATTGGCAAGTCGAAAAAGAAACACCCGATTATTTATATGTGAATATCAATATTGGTTTAGAAAGAGAGCAACGAAAATCTGCAATCAAAATTCCAGCACGTTGCGTTGACAAATTAGAAAATGGCAATTACCAAGTTTTTCTCAAAAAACAAGACCGCTTTTATTTTGTTGATAGTAAGAATCCA-GAGAACAACAAAATCATGCTAGGAAAAACCGTTGCGAAAAATCTACAAAATCAAAGCGGAAGCGTACCGCTTTATTCTAACAATGCCAAAATCAAGTTAAAACAACTGTTTAATGAGTTTGATTTTCTTATTTCTAAAGGATTAGATTTTGATACTTCTTTTGAAGCT---ATCGGAAAAGAATTAGAACAAACCTATTACCAAACAGAAAGCATTTTAGAAAACCTAGATAAGAAAATTCTTGAGTATGTCGAAGAAAATAAAGCCTATGCACGACCAAACACAAGAATATTAAAAACAATTGAA------------------------------AACCTACAA------------AAGGAACGAACAGACT---------TACACAAGACCTTAAAACAAGTCGAA-----AAAGAAATGCTTTACTATGACAAGTCCGTTGACCGTTACGAAGATTACCAGCAAGAACACACCAAAAATAAAAGTCAACATTC---------CCCACGTTTATAA---------------------------- Lactococcus_lactis_pJM4A ------------------------------------------------ATGACAGTGATTTATATGCCAAAACAATCGAA---------CGGAACAGTTCATTCTTCAAAAGATTTAAACCAACTCATTGATTATGTGATGAACCCTGAAAAAACAAATGACTTTGAATATGTTTCCGGTCAAAACATTTTAGATATTCATTCAACCTGTGATGAA------------------------------------------------ATGTTAGCGACACGAACAATGGCAAACACTTTAA------------------AAAACAAGCCACAAAAAAATGAAAGGTTCGGCTATCATTTTGTACAATCTTTTTCTCCTGATGATCATTTAAC-CCTGAACAAGTTCATGAAATTGGTTTAAAAACCATGAAAGAATATCTAGGAAGTTCTGCGGAATTTATTATTGCCACTCATACCGATAAGCCACACCTCCATAATCATATTGTGCTTAATGCAACCAACCCCTTGACCTTAAATAAATTTCATCAAAATAAAAATGATTTGGAACGATTGAAAGAAATTTCTGAT---------------------------------------AAGATTTCTAAAGAATATGGCTGTAAAATTATTGTCCGTCCTGAACAAAAATTAGGAAACTCTCACAAAAATTATTTGGTTTATCTTGCTAAAAATTCATATCGAAAAGAGATTAAAAACAAACTTGAATTTTTAATAAACCATTCTCATACGTGGGAAGATTTTAAAGAAAAAGCAAGAGCCTTAAATTTAAAAGTGGACGACACTAAA-AAATATG------------------CCACTTATCTTTTAGAGGGAAGCGAGCA-AACCA--AAAAAATTAGAGATAGAAGTTTAAAAAA------------------------------------TAATAAATTTTTAAAAGAAAATCTCAAAGAACGGATAGAAAAAAATACCATT------------GGTTATTCCGTTGAGGAAGTCGTGAAACTTTGGAATGACAAAGAAAGCATTCAAGAAAAAGGACGAGAAAAAGAAATTGAAATTTTACTTGAACATTGGCAAGTAACAAAAGAAACTGAAAAAGATTTAGTTGTAACCATTGATACTGCATTCGATAAT---------GAAGCAACGATTAAGATACCTGCACGCTGTGTTGACAAATTAGAAAACGGACAGTATAAAATATTTATTAAAAAGGGCGACCGCTTTTCGTATATTGATAAAAAAAGTCCG-GCAAACCATAAAATCATGGTTGGGGCAACCGTTGCTAAAAATTTACAAAGACAAAGTGGAAATATCCCTCTTTATTCTGACAATGTTAATATCAAACTCAAACAAGTTTTTCATGAGTTCGATTTCTTAATCAGTCAAGGGCTTGGTTTTGATAGAAGTTTTGAAACC---ATAGGGGAAGAGTTAAAAGCCACCTATCAAGAAACACAACATCAATTAGACAAGCTAGACACAAAGATTTTAGAATACGTGGAAACAACAAAAACGTTACCTTATGAAGATACCTCAATCAGAGATACCATTAAA------------------------------AACTTAACA------------AAAGAACGTGATGATT---------TGCGAGATACTTTATATAAAGTCGAT-----AAAAACATTCAATACTATCAAAAATCAGAACAACGTTTAGAAGCCTATCAAAAAAATCAAAGTCCAAAACACAAAGCACGTGA---------TGATGACTTTGAAATTT------AG---------------- Lactococcus_lactis_pRS01 ATGGTTTACACAAAACACATTATTGTTCATAAATTAAAACATTTACGCCAGGCAAAAGACTATGTAGAAAATGCGGAAAAAACTTTGGTGAATGAAAGTA---ACGAAGATCATCTCACAAATCTTTTTCCTTATATTTCAAATCCAGACAAGACAATGAGTAAGCAACTTGTTTCTGGTCATGGTATCACAAATGTTTATGATGCGGCCAATGAATTTATTGCGACAAAAAAATTAAAAGCACTATCCAAAGGAACTGACTTTAATTTTGATCCGCAAACTGGAAAGGTAAGATTCAA------------TGTAGAAAGCTTAGAGAAAAATAATGCGGTGCTTGGTCATCACCTCATCCAATCATTTTCTCCTGATGACAATCTAACTCCTGAACAAATTCATGAAATAGGTCGTCAAACCATATTAGAATTTACAGGTGGCGAATATGAATTTGTGATTGCAACCCACGTCGATCGTGAACACATCCATAACCATATCATTTTTAATTCTACGAATCTTTATACTGGCAAACAATTTGACTGGAAAGTCATTCCTAAAGAGAAAACAAAAAGCGGCAAAGCTTATGATGTGACCAAAAATAATTTTGAAAAAGTCTCTGATAAAATTGCTTCACGTTATGGCGCAAAAATTATTGA---------AAAGTCTCCAGGTAACTCTCACTTAAAATATACAAAATGGCAAACTCAGTCCATTTATAAAAGTCAAATCAAACAACGGTTAGACTATCTTTTAGAAATGTCATCAGATATTGAAGACTTCAAAAGAAAAGCAACGGCTTTAAATTTATCCTTTGATTTTTCTGGC-AAGTGGA------------------CCACTTATCGGCTGCTTGATGAACCTCAAATGAAAAACACACGTGGACGGAATCTTGATAAAAATCGTCC------------------------------TGAAAAATACAATTTGGAATCTATTATTGAACGGCTCGAAACAAATGAGCTT------------TCACTTACGGTTGATGAAGTAGTGGAGCGGTATG------AGGAAAAAGTTGACGTAGTTAAACAAGATTTTGATTATCAAGTTACGGTTGAAAAAGGGCAAATTGACCACATGACAAGTAAAGGATTTTACCTTAACGTTGACTTTGGGATTGCGGAT---------CGTGGTCAAATTTTTATTGGCGGTTATAAAGTTGACCAACTTGAAAATAGGGACTGCGTGCTTTATCTGAAGAAGAATGAAACCTTTCGTCTTTTGAGTGAAAAGGAGGCC-TCCTTCACCAAGTATTTGACTGGTCATGACCTCGCAAAACAGTTAGGGCTTTATAATGGAACTGTTCCTTTAAAGAAAGAACCTGTGATATCCACAATTAATCAGTTGGTCGATGCGATTAACTTTTTAGCTGAACACGGCGTTACTGAAGGGACTCAATTTAATAAT---ATGGAGAGCCAACTCATGAGCGCTCTTGGGGAGGCGGAAGAAAAACTTTATGTTATTGATAATAAAATTATGGAGTTAACCAAAATTGCAAAGTTACTCATTGAAAAAGAGTCGGATCATT----CTCAAGCGGT---TATTAATGAATTA------------GAGAATCTAGGAGTG--------GGTCCGTCAATAAAATATCAAGACATTCACCAAGAACTTCAGTCTGAAAAAATGAGTCGAAAAATACTCAAAAACAAATTTGAACAAACCGTTGATGAGATTAATACTT--TCAATGAAATTAGAGTTACTACCCTTGA--AGAAAATAAAGGAAAAATACT---------ATAA-------------- Lactococcus_lactis_pSK11P ------------------------------------------------ATGACCGTAATTTATATGCCGAGAGATACAAG---------TGGAGTAATTCATAGTCAAGGGCAACTCTCACGAGCGCTGAATTATATTGTCAATCCAGAAAAAACAAAAGGTGGAGAGTTAGTATCAGGTCAAAATATAAACGTGCCAAGCAATGCCTATAATGAA------------------------------------------------ATGTTACTGACAAGAGAAATGGCAATTTTAGCTG------------------GAAATCAACCGAAAGAAAATGAACGATTTGGTTTTCATTTTGTACAATCTTTTTCGCCAGAAGATAATTTAACACCTGAACAAGTTCATGAAATTGGATTAAAAACCATGAAAGCATATCTAGGTGAATCCGCAGAATTTGTTATCGCCACACATACCGACAAAGAACACTTACACAACCATATTGTGCTTAATGCAACTGACCCTTTAACTTTAAATAAATTTCATCAAAATAAAAATGATTTGGAACGATTGAAAGAAATTTCTGAT---------------------------------------AGAATTTCTAAAGAATATGGTTGTAAAATTATTGTCCGTCCTGAACAAAAACTAGGGAATTCTCACAAAAATTATTTGGTCTATCTTGCTCAAATTTCTTACCGGAAAGAGATTAAAAACAAACTTGAATTTTTGATGAACCATTCTCATACGTGGGAAGATTTTAAAGAAAAAGCAAGTGCCTTAAATTTAAAAGTGGACGATACTAAA-AAATATA------------------CCACTTATCTTTTAGAGGGAAGCGAACAAACCAA--AAAAAATTAGAGATAGAAGTTTAAAAAA------------------------------------TGATAAATTTTTAAAAGAAAATCTCAAAGAACGGATAGAAAAAAATACCATT------------GGTTATTCAGTTGAGGAAGTCGTGAAACTTTGGAATGACAAAGAGAGTATTCAAGAAAAAAATCAAGAAAAAGAAATTTCAATTTTGGTAGAAGATTGGCAAATTGAGAAAGAAACTGAAAATTTTTTATACGTAACGATTGATACTGCTTTAGATAAA---------GAAGCGACAATAAAGATACCTGCACGCTGTGTCGATAAATTAGAAAATGGCGATTATCAAGTCTTTATCAAAAATAAAGACCGATTTTCTTATCTTGATAAGAAAAGTCCG-GCAAACAATAAAATCATGTATGGAACAACTGTTGCTAAAAATCTACAACGACAAAGTGGAAATGTCCCTCTTTATTCTGACAATGCCAATATCAAACTCAAACAAGTCTTTCATGAGTTCGATTTCTTGATTAGTCAAGGACTTGGTTTTGATAGAAGTTTTGAAACC---ATAGGAAAGGACTTAAAAGCCACCTATCAAGAAACAGAAAACGAATTAGATAAATTAGATACAAAGATTATAGAGTATGTCGAACAAAACAAAAGTTTAGATTATGTAGATACCACTATCAGAGATACAATAAAA------------------------------AATCTAAAA------------CTTGAACGTGATGATT---------TAAGAGATACTTTATATAAAGTCGAT-----AAAAACATTCAATACTATCAAAAATCAGAACAGCGATTAGAAGCCTATCAAAAAAATCAAAGTCCAAAACATAAAGCACGTGA---------TGATGATTTTGAAATTT------AG---------------- Lactococcus_lactis_pUC063C ------------------------------------------------ATGACAGTGATTTATATGCCGAAACAATCAAA---------CGGAACAATTCATTCTTCAAAAGATTTAAGACAACTTATTGATTATGTGATAAACCCTGAAAAAACAAATGATTTTGAATATGTCTCCGGTCAGAATATTTTAGATGTTCAATCGACTTGTGATGAA------------------------------------------------ATGTTAGCCACAAGAACAATGGCAAATGCTTTAA------------------AAAACAAGCCACGAAAAAATGAAAGGTTCGGCTATCATTTTGTCCAATCTTTTTCTCCTGATGATCATTTAACCCCTGAACAAGTTCATGAAATTGGTTGTAAAACCATGAAAGAATATCTTGGAAATTCTGCGGAATTTATTATTGCCACTCATACCGATAAGCCACACCTCCATAATCATATTGTGCTTAATGCAACTGACCCTTTGACTTTAAATAAATTTCAACAATCAAAAAATGATTTGGAACGATTGAAAGAAATTTCTGAT---------------------------------------AAGATTTCTAAAGAATATGGCTGTAAAATTATTGACCGTCCTGAACAAAAATTAGGAAACTCTCACAAAAATTATTTGGTCTATCTTGCTCAAAATTCTTACCGAAAAGAGATTAAAAACAAACTTGAATTTTTAATGAACCATTCTCACACGTGGGAAGATTTTAAAGAAAAAGCAAGAGCCTTAAATTTAAAAGTGGACGACACAAAA-AAATATA------------------CCACTTATCTTTTAGAGGGAAGCGAACA-AACCA--AAAAAATTAGAGATAGAAGTTTAAAAAA------------------------------------TGATAAATTTTTAAAGGAAAATCTAAAAGAACGGATAGAAAGAAACACCATT------------GGTTATTCAGTTGAGGAAGTCGTGAAACTTTGGAATGACAAAGAAAGCATTCGAGAAAAAGGACAAGAAAAAGAAATTGAAATGTTACTTGAACATTGGCAAGTAACAAAAGAAACTGAAAAAGATTTAGTTGTAACCATTGATACTGCATTCGATAAT---------GAAGCAACGATTAAGATACCTGCACGCTGTGTTGACAAATTAGAAAACGGACAATATAAAATATTTATTAAAAAGGGCGACCGCTTTTCGTATATTGATAAAAGAAGTCCG-GCAAACCATAAAATCATGGTTGGGGCAACCGTTGCTAAAAATTTACAAAGACAAAGTGGAAATATCCCTCTTTATTCTGACAATGTCAATATCAAACTCAAACAAGTTTTTCATGAGTTCGATTTCTTAATCAGTCAAGGACTTGGTTTTGATAGAAGTTTTGAAACC---ATAGGAGAAGAGTTAAAAGCCACCTATCAAGAAACACAACATCAATTAGACAAGCTAGACACAAAGATTTTAGAATACGTGGAAACAACAAAAACCTTGCCTTATGAAGATACCTCTATCAGAGATACCATTAAA------------------------------AACTTAACA------------AAAGAACGTGATGATT---------TGCGAGATACTTTATATAAAGTCGAT-----AAAAACATTCAATACTATCAAAAATCAGAACAGCGATTAGAAGCCTATCAAAAAAATCAAAGTCCAAAACATAAAGCACGTGA---------TGATGATTTTGAAATTT------AG---------------- Lactococcus_lactis_pUC77B ------------------------------------------------ATGACAGTCATTAAAATGCCAAAACAATCGAA---------CGGAACGGTTCATTCTTCAAAAGATTTAAACCAACTCATTGATTATGTGATGAACCCTGAAAAAACAAATGACTTTAAATATGTTTCCGGTCAAAACATTTTAGATATTCATTCAACCTGTGATGAA------------------------------------------------ATGTTAGCGACTCGAACAATGGCAAATGCTTTAA------------------AAAACAAGCCACGAAAAAATGAAATTTACGGTTATCATTTTGTCCAATCTTTTTCTCCTGATGACCATTTAACGCCTGAACAAGCTCATGAAATTGGTTGTAAAACCATGAAAGAATATCTTGGAAATTCTGCGGAGTTTATTATCGCCACTCATACTGATAAAGACCACCTGCATAATCATATTGTGCTTAATGCAACCAACCCCTTGACCTTAAACAAATTTCAACAAAATAAAAATGATTTGGAAACTTTAAAAGAGATTTCTGAC---------------------------------------CGTATCTCTAAAGAATATGGCTGTAAAATTATTGTCCGTCCTGAACAAAAACTAGGGAATTCTCACAAAAATTATTTGGTCTATCTTGCTCAAAATTCTTACCGGAAAGAGATTAAAAACAAACTTGAATTTTTAATGAACCATTCTCACACGTGGGAAGATTTTAAAACAAAAGCAAGCGCCTTAAATTTAAAAGTGGACGACACAAAA-AAATATA------------------CCACTTATCTTTTAGAGGGAAGCGAACA-AACCA--AAAAAATTAGAGATAGAAGTTTAAAAAA------------------------------------TGATAAATTTTTAAAGGAAAATCTCAAAGAACGGATAGAAAGAAACACCATT------------GGTTATTCCGTTGAGGAAGTCGTGAAACTTTGGAATGACAAAGAAAGCATTCAAGAAAAAGGACAAGAAAAAGAAATTGAAATGTTACTTGAACATTGGCAAGTAACAAAAGAAACTGAAAAAGATTTAGTGGTAACCATTGATACTGCATTCGATAAT---------GAAGCAACGATTAAGATACCTGCACGCTGTGTTGATAAATTAGAAAACGGACAATATAAAATATTTATTAAAAAGGGCGACCGCTTTTCGTATCTTGATAAAAGAAGTCCG-GCAAACCATAAAATCATGGTTGGGGCAACCGTTGCTAAAAATTTACAGAGACAAAGTGGAAATATCCCTCTTTATTCTGACAATGTCAATATCAAACTCAAACAAGTTTTTCATGAGTTCGATTTCTTAATCAGTCAAGGACTTGGTTTTGATAGAAGTTTTGAAACC---ATAGGAGAAGAGTTAAAAGCCACCTATCACGAAACAGAAAAGCAATTAGATAAATTAGATACAAAGATTATAGAGTATGTCGAACAAAACAAAAGTTTAGATTATGTAGATACCACTATCAGAGATACAATAAAA------------------------------AATCTAAAA------------CTTGAACGTGATGATT---------TAAGAGATACTTTATATAAAGTCGAT-----AAAAACATTCAATACTATCAAAAATCAGAACAGCGATTAGAAGCCTATCAAAAAAATCAAAGTCCAAAACATAAAGCACGTGA---------TGATGATTTTGAAATTT------AG---------------- 'Lactococcus raffinolactis Str_4877' ------------------ATGCAAATAAAAACACCTGAACGTTTAACAAGGTCTGTCAAATATATTTTAAACCCTAAAAA---------AACAAATGTACCTTATGTAGAAACTGAAAAAGA------TTTTCCAGTCACATTTACTGAAGATAAAAAAATGATGCAATTGGTTTCAGGGCATCAAATTTCAAATGTAAATTATGCTGATCAAGAA------------------------------------------------TTTTTTCTAACAAAGATAATGGCTAATGCTAGCAATGGCAATCCTGATAATTCTGACATGAACAATCCTAATCGAGTAATGGCACATCATATTGTGCAATCATTTGCCCCTGATGAAAACTTAACTCCTGAAGAAATTCATGAACTAGGGAGAAAAACAGTTTTAGAATTGACTGGTGGCGATCATGAGTTCATAGTAGCAACTCATGTTGACCAAGATCATATCCATAATCATATTATTTTTAATACAACAAATTCTACAACCCTTAAAAAATTCAGATGGCAAAAGGGTACAACTCAAAGCCTACGAAATATTTCCGAT---------------------------------------AAACATGCGGACATTGCAGGTGCTAATATTTT---------AAGCAACACAATGAAAAACTCGCATAAGAAATATTCTGCCTATCAACGAAAAAATAATTTTAAAATTGAAATAAAGGAACGTTTAAATTTTTTACTGAAGCACTCTACTTCTATTTATGATTTTAAAGCAAAAGCTAAAGCTCTCAATCTGATAATTGATGATACAGGTAAAAATGT------------------AAAGTATCGTCTTGCAGA-TATGGAACAAAAAAGAAATACACGTGATGATACACTTTCAAAACG------------------------------------TGGAAAATATTCTATATCTAATATTGAAAAAATTGTCTCTAAAAATGTTTCT------------GTATTCTCTCAATCTGAAATAA------AAAATGAATATGAAAAATTTAAAGTAGAAAAAAGTGATGATTTTGAAATGAAAATTTTAGTTGAAGATTGGCAAGTAAAAGAGGAAACAAAAAATGGTATCTATATTGACATTGATTATGGACTACTTAAT---------AGTGGGGCTATATTAGTACCCTCACACCAAGTCAATAAACTTGATGATGGTAACTATAATATTTTTATCAAGAAAAAAGATTTTTTCTATTTCACAAATTCTGATGATGCG-ACTAAAAATAAATTTATGACTGGTAACATAGTTGCCAAGCAATTGTCTCATGATAATCAGCATCTAGTGCTTCACAAAAATCAATATATATCAAAACTTGATCAGATCATCAAAGATTTTGAGTATCTCTCTTTAAAAGGTGTTTCAACTGGTCAACAGTTTTCAGAT---TTAAAAAATCAATTTGAAAATCAGGTTCATGAAACAGAAAAAGAGCTATCTGTTTTAGATGAAAAAATTTCTCGTATGAACAAAATCATCAGTGCAATTGATGGTCTCAATTCTGATGATTTGAGAAAAGTTGAAACTTCTGAAGCAATTTTATCAG-ACTTAAAAATTGATAAATCG--------ACTAAGAGAGGTGATC---------TAATTAAAACTATCGAGGAAGTAAAGTTTGAAAGACAAGTGTTAAATGAACGATTTCAAGATATTGTTGAGAAA--TATAAAACCTATCAGGGTGTCAAAGAAAATGTTAGAGATCGAGAAAATGATACTATCAAAAATA------AAGAGGTCAAGAGATAA- ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M58881] TITLE Lactococcus_lactis_Alignment_of_22_Relaxases_Exon2; LINK TAXA = Taxa2; DIMENSIONS NCHAR=1341; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Enterococcus_faecalis_pTEF4 CATATTATTTTTAGTTCAACCAATTTAAAAAC---------------------------------------AGGTAAAGCCTTTCGCTGGCAAAAAGGAACCAAAAAAGTCTTTGAACAAATTTCGGATAAAATTGCAGCGAAGGAAGGCGCAAAAATTATTGAAAA---------ATCACCGAAGCAAACTCATACAAAATATACAAAATGGCAAACAGAGTCCATTTATAAACAAAAAATAAAAAGTCGGTTAGACTTTTTATTAGAACAAAGTTCTTCAATTAATGACTTCCTAGAAAAAGCAGAAGCTTTGAATTTATCGGCAGACTTTTCTAATAAGTGG-ACGATCTATCGATTGCTTGACGAACCACAAATAAAAAATACTCGTAGTCGAAGCTT--------------------------------GTCAAAAAGTGACCCCACTAGATATAATTATGAAAAGATTATTGAACGATTGAAAGAAAATAA------AAACGTTCTAACAGTGGAAGAATGT------GTCAAAAGATACGAAGAAAAAAATGAACAAGAAAAAAATAATTTTGACTATCAATTTACAATAGAACCATGGCAACTGTCTCACAAAACAGAAAGAGGATATTATATAAATATCGATTATGGCTATGGTAAT---------TCTGGAAAGCTCTTTGTAGGAGGGTATAAGGTTGATCCATTAGACAACGGTAATTACAATATCTATATTAAAAGAAATGAGTATTTTTATTTTATGAGCGACAAGGATGCTACTAAAAGTAAATACTTAATAGGGGCTTCGTTGATTAAACAATTACGACTGTATAATGGACAAACACCACTGAAAAGAGAACCTGTGATGCAAACCATTGATGAATTAGTTAGTGCCATTAACTTTTTAGCGGCGAATGAAATCGAGGACACAAGACAACTAAAATTAT------------TAGAAGAAAAATTAGAAGTTGCTTTTCTTGAAGCAGAAAAAACTTTAGAGACTCTTGACGAGAAGATGTTAGAGCTGCACCAATTAAGTAACCTCTTATTAGAAAATGAACTGCAGGGAGATCCAGAGTTAATTCAGAAAAAATTGAAAA------CATTGTTACCAGACGCAACGCTTGCGGAATTT---TCTTATGAAGATGTTCGAGGAGAAATAGAAGCAATTAAAACCAGTCAAACTTTGTTAGAGAGTAAACTGGAACGAACTCGAAATGAAATTAATCAG-CTTCATGAAATACAAGCCGTACAGGAAAAAGAGCCAGAGAAGCAAACCGACATTAAGCCCAAACTAT----------------AA- Lactococcus_lactis_1064.C11 CATATTATTTTGAATGCCACAAATCCAAAGACACTCAAAAA---------------------------------------ATTTCAACAATCTAAAAGCCAGCTAGAAGAATTGAAAGAAATATCTGATGTTATTTCTAAAGAGTATGGCTGTAAAATTATTGACCGTTCTTTAAA---------AAATTCTCACAAAAAATATCAAGTCTACCTTGCTAAAAATTCTTATCGAAAAGAAATAAAAAGCAAAATTAAATTCTTACTTTCTCATGCCAGCAATTGGACCGACTTTAAAAATAAAGCAAATGCTTTAGGGCTGATTGTTGATGATAAAGGAAA-GTACACCACTTACCAATTG-AGTGGCACTAGTC----------------A-----------------AGAAAGA-------AAAGTCAGAGATAGAAGCCTAAAAAATCAAGCATTCATGAAAGAAGCCATTTCTGAACGCTTGAAAGAAAATGA------AGTGGTTTATACAGAATCAGAAGTCAAAGAACTATGGGCAGAGAATCAAACCATTCAAGACAAGGAACAAGAAACAGAAATTGAAATGCTTATAGAAGATTGGCAAGTCGAAAAAGAAACAGCCGATTATTTATATGTGAATATCAACATTGGTTTAGAAAGAGCGCAACGAAAATCCGCAATCAAAATTCCAGCACGTTGTGTGGACAAATTAGAAAATGGCAATTACCAAGTTTTTCTCAAAAAACAAGACCGCTTTTATTTTGTTGATAGTAAAAATCCAGAGAACAACAAAATTATGCTTGGAAAAACCGTTGCGAAAAACCTACAAAATCAAAGCGGAAGCGTACCGCTTTATTCTAACAATACCAAAATCAAGTTGAAACAACTGTTTAATGAGTTTGATTTTCTTATTTCTAAAGGATTAGATTTTGAT------------ACTTCTTTTGAAGCTATCGGAAAAGAATTAGAACAAACCTATTACCAAACAGAAAGCATTTTAGAAAACCTAGATAAGAAAATTCTTGAGTATGTCGAAGAAAATAAAGCCTATGCACGAC------------CAAACACAAGAATATTAAAAACAATTGAAAACC---------------------TACAAAAGGA------------ACGAACAGACTTACACAAGACCTTAAAACAAGTCGAAA------AAGAAATGC------TTTACTATGACAAGTCCGTTGACCGTTACGAAGAT-TACCAGCAAGAACACACCAAAAAT---------AAAAGCCACCATTCCCCAC---GTTTGTAA----------------------- Lactococcus_lactis_1AA59 CATATTGTGCTTAATGCAACTGACCCTTTGACTTTAAATAA---------------------------------------ATTTCAACAATCAAAAAATGATTTGGAACGATTGAAAGAAATTTCTGATAAGATTTCTAAAGAATATGGTTGTAAAATTATTGACCGTCCTGAACAAAAATTAGGAAACTCTCACAAAAATTATTTGGTCTATCTTGCTCAAAATTCTTACCGGAAAGAGATTAAAAACAAACTTGAATTTTTAATGAACCATTCTCACACTTGGGAAGATTTTAAAACAAAAGCAAGAGCCTTAAATTTAAAAGTGGACGACACAAA-AAAATATACCACTTATCTTTTAGAGGGAAGCGAACA----------------A------------------ACCAAA-------AAAATTAGAGATAGAAGTTTAAAAAATGATAAATTTTTAATGGAAAATCTCAAAGAACGGATAGAAAGAAACAC------CATTGGTTATTCCGTTGAGGAAGTCGTGAAACTTTGGAATGACAAAGAAAGCATTCAAGAAAAAGGACAAGAAAAAGAAATTGAAATTTTACTTGAACATTGGCAAGTAACAAAAGAAACTGAAAAAGATTTAGTTGTAACCATTGATACTGCATTTGATAAT---------GAAGCAACGATTAAGATACCTGCACGCTGTGTTGACAAATTAGAAAACGGACACTATAAAATATTTATTAAAAAGGGCGACCGCTTTTCGTATATTGATAAAAGAAGTCCGGCAAACCATAAAATCATGTACGGGGCAACCGTTGCTAAAAATTTACAAAGACAAAGTGGAAATATCCCTCTTTATTCTGACAATGTCAATATCAAACTCAAACAAGTTTTTCATGAGTTCGATTTCTTAATCAGTCAAGGGCTTGGTTTTGAT------------AGAAGTTTTGAAACCATAGGAGAAGAGTTAAAAGCCACCTATCAAGAAACACAACATCAATTAGACAAGCTAGACACAAAGATTTTAGAATACGTGAAAACAACAAAAACGTTACCTTATG------------AAGATACCTCAATCAGAGATACCATTAAAAACT---------------------TAACAAAAGA------------ACGTGATGATTTGCGAGATACTTTATATAAAGTCGATA------AAAACATTC------AATACTATCAAAAATCAGAACAGCGATTAGAAGCC-TATCAAAAAAATCAAAGTCCAAAA---------AATAAAGCACGTGATGATG---ATTTTGAAATTT----------------AG- Lactococcus_lactis_CF103 CATATTGTTTTAAATGCAACCAACCCCTTGACCTTAAACAA---------------------------------------ATTTCAACAAAATAAAAATGATTTGGAACGATTGAAAGAAATTTCTGATAAGATTTCTAAAGAATATGGTTGTAAAATTATTGACCGTCCTGAACAAAAATTAGGAAACTCTCACAAAAATTATTTGGTTTATCTTGCTCAAAATTCTTACCGGAAAGAGATTAAAAACAAACTTGAATTTTTAGTGAGCCATTCTCACACTTGGGAAGATTTTAAAACAAAAGCAAGAGCCTTAAATTTAAAAGTGGACGACACCAAAAAAATATACCACTTATCTTTTAGAGGGAAGCGAGCA----------------A------------------ACCAAA-------AAAATTAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Lactococcus_lactis_CF112 CATATTATTTTTAATGCGACCTCTTCAGTTGATTTAAAAAA---------------------------------------ATTTCGTTGGCAAAAAGGGACAACAAATCTTCTGAGAAATATTTCTGACAAAATAGCAGATTATCATGGAGCAATGATTTTAGATGCTCCAAAAA---------GAACCTCTCATGCCAAGTATGAAAAATACAAACGAGAAAATAATTATCGTCAAATTTTAAAAGAGCGATTAGATTTTTTGTTAAGACACTCTTTAAATTTTGAGGACTTCAAACAAAAAGCACATGCGCTTAATATCCAAGTTGACGAGCATCACAAGTCA-AAAGATTATGGCCAAGTCATCAATTATCA----------------ACTCACAGATTTGCCTCAACAACGACCTGCACGTGATTATACTTTGAAC-AAAAAAAGTCGAAAATATTCTTTTGATAAACTAGTAGAGCGCTTTGAAAATAATCATATCGAAGGGGTTTATCATGTTGACCAAATCAAACAAGCCTTTCA------AGATGAGCATCAAAAAATTGAAAAAGAGCCTGATCTTGAGTTCGTGATTGAGCCCTGGCAAATTGAAAAAGATACAATGAATGCTATTTATGTTCGTATTGAATATGGCCGCTATG---------AGGAAGGTGTGATTAAAATTCCTGATTATAAATTAGATAAGCTAGAAGACGGTTCTTACAAGGCTTATTTTAAAAATAAAGACACATTTTATTTTATTAATGATGAAGTAAATAA---AAGTAAGTTTTTAAAAGGTTCTGTGCTTTCTAAAATTTTATCTGGTGAAAGTGGTACAATTCTTCAGCGCAAAAATTCAGCCATTCAAAATGTACGCGAAATGGTTGCTGCGTTGAATTTAATTTCAGAACGCCAGGTTAACGGTGAA------------AAAGCAGTTGAAGTGCTTGGTCAAAAATTTATGGATGATGTGGAACAAATTAAGCAAGCCCTACAAAATTTAGATGCTCATATTTTAAAACAGAATGAGCAATTAAAATA---CGAAAATC------------CAACTGAAGAGAATAAACTCAAAATTAAAGCTC---------------------TTCAACTTGA------------GCGAAAAGATTTGCAAGCTCAATATCAAAAAGTGATTA------AAAAGATGA------AAACTTATGATGCAGGACAAGATAT-----------TATGAACGAAAAAATTCATGAAAA-----T---GTCCAGACTGCAGATAAGG---ATATGCAAATAT----------------AA- Lactococcus_lactis_DmW198 CATATTATTTTTAATGCGACTTCAAGCACTGATTTTAGAAA---------------------------------------TTATCGATGGCAAAAAGACACGCTACAGTTAGCACGTGAACTCTCTGATAAAATTGCAGAAAAACATGGCGCAATCTTAGAAAAAAC------AAAACCCTATCAAAATTATCATCGAAACTATCAAAAATATTTATCAGATAATCCTATACGACCCGAACTCAAACAACGTTTAAATTTTCTTTTAAAACATTCTCTTAGTCTATCTGATTTTCTTCAAAAAGCAAAGTTACTTCATGTTGAAGTTGATGCATCTGGAAAATAC-ACGACTTATCGATTGACGGATTTTGATCAAAAACGTCCGATTCGAGATTGTAGTTTAATCTCAAAAGAAG--ATAAAAAAAGAATGGATGCTCATCCTGAAAAAAGAATCTTCTCAAAAGAAGAAATTGAGAGACGGTGCGAAAAAAATGTGCAGAATCATTCAATTGTCTTTGGTCAGTCAGAAATTTTTAAAGAGTATCAAAAACAACAAAAGTGGTTTAAAGAAAATTCAGATATTCGATTAGTCATCGAACCTTGGCAAATTGAATCGAAAACACCTGATGCCATTCGAGTTTTTGTGGAGGCAGGGCA------------TCGGAAAGGAACTGTAAAAATTGAATCGACTTTTTTTGATAAATTAGGAGAA---AATTTTGAGCTTCATCTTAATAATTTTTCAAAATTTAAGTTTTTAGACGAGAGAAACCAAAACTATTCATCTATTCTTTTAGGAAAAGAAATTATCGGTCAACTCTCAAAAGAAAATGAACGTATCCCTGCTAGAAAAAATTATGGAATGAACTATGTGCATGACTTATTTGAAGCAACAAACTTACTAAGTCGACATGGAATTAGTGGGCAA------------GAATCTTTCAAACATCTCGGAGAAGAGTTTATCACGAATATGGAAAAAGTAGAATTAGCACTTGAACAATTAGATAAAGAAATACTTACTCAAACAGAACGAGTGAAATTCAATCAAG---------------GGAATCCTCAACTCATTGAACAGCTCAAA-CAA---------T-----------TACAAAATGA------------ACATAAATCTTTAGAATCAGCCTACAAAGAACTCACAG------ATGAACTTG------AAATTTACGATCAAATTGAAAACTTGCAAGCTCAAAAAACAAGAAAAACGAACTTCACAAGAACAG---GAGAAGCAACCGCATGTCA---GAAGATAACTTTCAATCCCTCGATAAATTAG Lactococcus_lactis_G50 CATATCATCTTTAATTCTACATCTAACGTTGACTTAAAAAA---------------------------------------ATTTCGTTGGAAAAAAATCACTGCATCCAACCTTAGAAAAATATCAGATGAAGTAGCTTTGGAATATGGAATTCAACCTTTGAAAAA---------AACATTAGACTCTAAGTATAAAGCGTATGAAAAATATAGAAAAGAGATGACTTTCTCAAATGAGATTAAACAGCGTTTAGATTTTTTAATTTCTCAATCAAGCAGCTTTGAAGATTTTCAAAATAAATTACCGCTCTTAAATCTTCAAGGGGATTTCTTTACTAATTCGGGAAAAT-TAAAAAAATATGCCACTTACAA----------------GCTTTTAGATTTTCCTCAACAAAGAGCCAAACGTGACAATACTT----TAAATAAAAATGGAGACTATCTTTTAAAAAATCTTGAGGAACAGTTTAAACAAAATGA------AGTCGTTTTATCTGAAGATGAAATTAT------AGAGGGATATGAAAAAATTAAGCGTGATGTATTTGCATTGCCTGACGTTGAAATTGTGATAGAACCCTGGCAGATTTCTCAGCAAGATGAAGATTTTATTTATCTTACTTTTGATTATGGTATAAAAAAT---------CAAGGGGAAGTTCGGATTCATAAATCTCAATTTTTAACTCAAGATAATGGCAATTATAAGTTGCAACTGAAGCACTCGGATTTCTTCCTATTAGTCGATTCTAAACATCAAAGTAAAAGTCGTTTTATAAAGTCTAGCGTTCTAGTTGAGCAACTGACAAGCGACAATTTACGTCCAGCAACAAAATTCTATTCGGCTAGGAAAGAGTTTATTTTTGCCCTGGACTCTCTCAATTTCTTAGCACAAAAAGATATTCATACTGGAGACCAGGTGGAAAAATATTTTTCAGTTATGAAAAGTAAACTCAAAGATTCAACTGAAGCA------------ATAGAAAATGTAGAGCGCAAAATAGAGGCTGTTGTCGAGCAATATAAATA---TAAATCTC------------CAAGCCTGGAGGTCAAGAAAAAACTTGAAGGAC-------TTTATCTTCAAAACGAGGAACTTAAAAATCT-----TCACAATGAAATTATAAAAGCTATTGATCAAGTAGAAC------AAATTTCTG------AGTATTCTTTAGGTCATAAAGAAAGTCTTCAGTAT-GTTCTAAAAGATAAACAGACAGAA---AAT---CAA-----TCACGAAAACA-------------AT----------------AA- Lactococcus_lactis_HP CATATTGTTTTAAATGCAACCAACCCCTTGACCTTAAACAA---------------------------------------ATTTCAACAAAATAAAAATGATTTGGAACGATTGAAAGAAATTTCTGATAACATTTCTAAAGAATATGGCTGTAAAATTATTGTCCGTCCTGAACAAAAACTAGGGAACTCTCACAAAAATTATTTGGTTTATCTTGCTAAAAATTCTTACCGAAAAGAGATTAAAAACAAACTTGATTTTTTAATGAACCATTCTCACACTTGGGAAGATTTTAAAGAAAAAGCAAGAGCCTTAAATTTAAAAGTGGACGACACAAA-AAAATATACCACTTATCTTTTAGAGGGAAGCGAGCA----------------A------------------ACCAAA-------AAAATTAGAGATAGAAGTTTAAAAAATGATAAATTTTTAAAAGAAAATCTCAAAGAACGGATAGAAAAAAATAC------CATTGGTTATTCAGTAGATGAAGTCGTGAAACTTTGGAAAGACAAAGAAAGCATTCAAGAAAAAGGACGAGAAAAAGAAATTGAAATTTTACTTGAACATTGGCAAGTAACAAAAGAAACTGAAAAAGATTTAGTTGTAACCATTGATACTGCATTTGATAAT---------GAAGCAACGATTAAGATACCTGCACGCTGTGTTGATAAATTAGAAAACGGACAGTATAAAATATTTATTAAAAAGGGCGACCGCTTTTCGTATCTTGATAAAAAAAGTCCGGCAAACCATAAAATCATGTATGGGGCAACCGTTGCTAAAAATTTACAAAGACAAAGTGGAAATATCCCTCTTTATTCTGACAATGTCAATATCAAACTCAAACAAGTCTTTCATGAGTTCGATTTCTTAATCAGTCAAGGGCTTAGTTTTGAT------------AGAAGTTTTGAAACCATAGGAGAAGAGTTAAAAGCCACCTATCAAGAAACACAACATCAATTAGACAAGCTAGACACAAAGATTTTAGAGTACGTGGAAACAACAAAAACCTTGCCTTATG------------AAGATACCTCTATCAGAGATACCATTAAAAACT---------------------TAACAAAAGA------------ACGTGATGATTTGCGAGATACTTTATATAAAGTCGATA------AAAACATTC------AATATTATCAAAAATCAGAACAGCGATTAGAAGCC-TATCAAAAAAATCAAAGTCCAAAA---------CATAAAGCACGTGATGATG---ACTTTGAAATTT----------------AG- Lactococcus_lactis_KLDS CATATTGTCTTTAACTCAACGAATGCGATGACGGGAAAACAGTTTGAGTGGCAGTTGCCGCG---------CTTAAAAAATGGCAAGACTAAAGATATGACTTATGAAGCTTTTCAAAAAATCTCGGATCGGATTGCCTCAAAGGCAGGTGCCAAAATCATTGAGTT---------CTCGCCTAAAAATTCTCATGCCAAGTACACCAAGTGGCAGACCGAAAATATTTTTAAATCACGGATTAAATCCCGTTTGGATTTTTTGTTGGAGCATTCCCTTGACTTAGATGATTTCAAAACAAAGGCTAAAGCTCTCAACTTAGCAGTGGATTTTTCGGGGAAGTGG-GCAACCTATCGTTTGTTAGATGATGTGCAAGTGAGAAATACCCGCGGACGTAACTT--------------------------------GGTCAAGTCTGACCCAGAGCGCTATAATCTGGATCGGATTGAAGCTCATCTGAAAAAGAATAC------GGGGATGTTTTCGGTGGCAGATGTT------GTCAATCAGTACGAAGAAAAAATCGAAACCATTAAAAATGATTTCGATTATCAAGTGACGATTGAACCTTGGCAGATTGACCATGTGACGACCAAAGGACTTTATATCAATGTGGACTTTGGTCTCTCTCAA---------CATGGTGTCATCTTCATCGGTGCTTACAAGACCGACTTGCTAGAGGACGGTAATTATAATCTTTACCTCAAAACCAATGACTATTTTTACTTCATAGACATGGCAGGTGCAGCCAATAATCGGTTTATGATGGGACCAACCCTCATGCGGCAGCTTAGCCTTTATAATGGCACTGTTCCTATCGCCAAAGAAAAAGTGATTTCGACGATTGACGAATTGACCGAGGCGATTAACTTTTTGGCGAGCCATGGTGTGACGGAGGGCGGCGAGCAACTGGTGC---------GATTAGAGCAGCAACTGCTCGAAGCGGTGCAAGAGGCAAAAAAACGACTGAAAGCATTAGAACAGAAAATCAGAGACTTGAATGTCTTAGCAAAAGAACGAATTGTCA--------------------GCAGTAATGAAAGAACTAAAGA----------------------CGAAGAACTTGAGCAAATT---AAAAAT---------------CAAATTGCTTCGGTCAAGGTTAGCCAAAGATTGTTAAAAGGAAGGTACAATGAGACAATATCGCAAATTGATGAG-TATCAAGAAATTCTACAAGCTAGGAAAAAT---------AAGGGAAAGTAA----------------------------------- Lactococcus_lactis_LMG9447 CATATTATTTTTAATGCGACTTCAAGCGCTGATTTTAGAAA---------------------------------------TTATCGTTGGAAAAAAGACACACTACAATTAGCTCGTGAACTCTCTGATAAAATTGCTGAAAAGCACGGTGCAATTTTAGAAAATAC------AAAACCCTATCAAAATTATCATCGGAACTATCAAAAATACTTATCAGAAAATCCAATTCGCCCCGAACTCAAACAACGTTTAAATTTTCTTTTGAAACATTCTCTTAGTCTTTCTGACTTTATTCAAAAAGCTAAACACCTTAACATTGAAGTCGATACATCTGGTAAATAC-ACGACTTACCGTTTGACTGATTTTGAGCAAAAACGTCCGATTCGAGATAGTAGTTTAATCTCAAAAGAAG--ATAAAAAAAGAATGGATGCTCACCCTGAAAAAAGAGTTTTCTCAAAAGAAGAAATTGAGAAACGATGCCAAAAAAATGTTAAAAATCATTCCATTGTTTTTGGTCAATCAGAAATGTTAAAAGAGTATCAAAAACAACAAAAGTGGTTTAAAGAAAATTCAGACATTCGGTTAGTCATCGAACCTTGGCAAATTGAATCGAAAACACCTGATGCCATTCGAGTTTTTGTGGATGCAGGGCA------------TCGGAAAGGAACCGTAAAAATTGAATCGACTTTTTTTGATAAAGTAGGAGAA---AATTTTGAGCTTCATCTTAATAATTTTTCAAAGTTTAAGTTTTTAGACGAGAGAAACCAAAACTACTCATCCATTCTTTTAGGAAAAGAAATTATCGGTCAACTTTCAAAAGAAAATGAACGTATCCCTGCTAGGAAAAATTATGGAATGAACTATGTTCATGATTTATTTGAAGCCACAAACCTACTAAGTCGTCATGGAATTAGTGGACAA------------GAATCTTTCAAACATCTCGGAGAAGAGTTTATCACAAATATGGAAAAGGTGGAATTAGCCCTTGAACAATTAGATACAAAAATACTTGCTCAAACAGAGCAAGTGAAATTCAATCAAG---------------GGAATCCTCAACTCATCGAACAGCTCAAA-CAA---------T-----------TACAAAACGA------------ACGCAAATCTTTAGAAACAGCCTACAAAGAAATCACAG------ATGAACTTG------AAATTTACGACCAAATCGAAAACTTGCAAGCTCAAAAACAAG-AAAAACAAAATTCACAGGAACAG---GAGAATCAACCACATGCCA---GAAGATAA----------------------- Lactococcus_lactis_p275D CATATTGTTCTTAATGCGACTGACCCTTTAACTTTAAATAA---------------------------------------ATTTCAACAAAACAAAAATGATTTAGAACGATTGAAAGAAATTTCTGATAGAATTTCTAAAGAATATGGTTGTAAAATTATTGTCCGTCCTGAACAAAAACTAGGGAATTCTCACAAAAATTATTTGGTCTATCTTGCTCAAATTTCTTACCGGAAAGAGATTAAAAACAAACTTGAATTTTTGATGAACCATTCTCATACGTGGGAAGATTTTAAAGAAAAAGCAAGTGCCTTAAATTTAAAAGTGGACGATACTAAA-AAATATACCACTTATCTTTTAGAGGGAAGCGAACA----------------A-----------------ACCAAA--------AAAATTAGAGATAGAAGTTTAAAAAATGATAAATTTTTAAAGGAAAATCTCAAAGAACGGATAGAAAAAAATAC------CATTGGTTATTCAGTTGAGGAAGTCGTGAAACTTTGGAATGACAAAGAGAGTATTCAAGAAAAAAATCAAGAAAAAGAAATTTCAATTTTGGTAGAAGATTGGCAAATTGAGAAAGAAACTGAAAATTTTTTATACGTAACGATTGATACTGCTTTAGATAAA---------GAAGCGACAATAAAGATACCTGCACGCTGTGTCGATAAATTAGAAAATGGCGATTATCAAGTCTTTATCAAAAATAAAGACCGATTTTCTTATCTTGATAAGAAAAGTCCGGCAAACAATAAAATTATGTATGGAACAACTGTTGCTAAAAATCTACAACGACAAAGTGGAAATGTCCCTCTTTATTCTGACAATGCCAATATCAAACTCAAACAAGTCTTTCATGAGTTCGATTTCTTGATTAGTCAAGGACTTGGTTTTGAT------------AGAAGTTTTGAAACCATAGGAAAGGACTTAAAAGCCACCTATCAAGAAACAGAAAAGCAATTAGATAAATTAGATACAAAGATTATAGAGTATGTCGAACAAAACAAAAGTTTAGATTATG------------TAGATACCACTATCAGAGATACAATAAAAAATC---------------------TAAAACTTGA------------ACGTGATGATTTAAGAGATACTTTATATAAAGTCGATA------AAAACATTC------AATACTATCAAAAATCAGAACAGCGATTAGAAGCC-TATCAAAAAAATCAAAGTCCAAAA---------CATAAAGCACGTGATGATG---ATTTTGAAATTT----------------AG- Lactococcus_lactis_pAF12 CATATTATTTTGAATGCCACGAATCCAAAAACACTCAAAAA---------------------------------------ATTTCAACAATCTAAAAGCCAGCTAGAAGAATTGAAAGAAATATCTGATGTTATTTCTAAAGAGTATGGCTGTAAAATTATTGACCGTTCTTTAAA---------AAATTCTCACAAAAAATATCAAGTCTACCTTGCTAAAAATTCTTATCGAAAAGAAATAAAAAGCAAAATCAAATTTTTACTTTCTCATGCCAACAATTGGAACGATTTTAAAAATAAAGCAACTACTTTAGGGCTGATTGTTGATGATAAAGGAAA-GTACACCACTTACCAACTG-AGTGGCACTAGTC----------------A-----------------AGAAAGA-------AAAGTCAGAGATAGAAGCCTAAAAAATCAAGCATTCATGAAAGAAGCCATTTCTGAACGATTGAAAGAAAATGA------AGTGGTTTATACAGAATCAGAAGTCAAAGAACTGTGGGAAGATAATCAAACCATTCAAGACAAGGAACAAGAAACAGAAATTGAAATGCTTATAGAAGATTGGCAAGTCGAAAAAGAAACAGCCGATTATTTATATGTAAATATCAATATTGGTTTAGAAAGGGAGCAACGAAAATCTGCAATCAAAATTCCAGCACGTTGCGTTGACAAATTAGAAAATGGCAATTATCAAGTTTTTCTCAAAAAACAAGACCGCTTTTATTTTGTTGATAGTAAGAATCCAGAGAACAACAAAATCATGCTAGGAAAAACCGTTGCGAAAAACCTACAAAATCAAAGCGGAAGCGTACCGCTTTATTCTAACAATGCCAAAATCAAGTTAAAACAACTGTTTAATGAGTTTGATTTTCTTATTTCTAAAGGATTAGATTTTGAT------------ACTTCTTTTGAAGCTATCGGAAAAGAATTAGAACAAACATATTACCAAACAGAAAGCATTTTAGAAAACCTAGATAAGAAAATTCTGGAGTATGTCGAAGAAAATAAAGCCTATGCACGAC------------CAAACACAAGAATATTAAAAACAATTGAAAACC---------------------TACAAAAGGA------------ACGAGCAGACTTACACAAGACCTTAAAACAAGTCGAAA------AAGAAATGC------TTTACTATGATAAATCCGTTGACCGTTACGAAGAT-TACCAGCAAGAACACACCAAAAAT---------AAAAGTCAACATTCCCCAC---GTTTATAA----------------------- Lactococcus_lactis_pAH82 CATATTATTTTAAATGCCACGAATCCAAAAACACTCAAAAA---------------------------------------ATTTCAACAATCTAAAAGTCAGTTAGAAGAATTGAAAGAAATATCTGATGTTATCTCTAAAGAGTATGGCTGTAAAATTATTGACCGTTCTTTAAA---------AAATTCTCACAAAAAATATCAAGTCTATCTTGCGAAAAATTCTTACCGAAAAGAAATAAAAAGCAAAATCAAATTTTTACTTTCTCATGCAAACAGCTGGAACGATTTTAAAAATAAAGCAACTGCTTTAGGGCTGATTGTTGATGATAAAGGAAA-GTACACCACTTACCAATTG-AGTGGCACAAGTC----------------A-----------------AGAAAGA-------AAAGTTAGAGATAGAAGCCTAAAAAATCAAGCATTCATGAAAGAAGCCATTTCTGAACGCTTGAAAGAAAATGA------AGTGTTTTATACAGAATCAGAAGTCAAAGAACTATGGGAAGAGAATCAAACTATTCAAGACAAGGAGCAGGAAACCGAAATTGAAATGCTTATAGAAGATTGGCAAGTCGAAAAAGAAACACCCGATTATTTATATGTGAATATCAATATTGGTTTAGAAAGAGAGCAACGAAAATCTGCAATCAAAATTCCAGCACGTTGCGTTGACAAATTAGAAAATGGCAATTACCAAGTTTTTCTCAAAAAACAAGACCGCTTTTATTTTGTTGATAGTAAGAATCCAGAGAACAACAAAATCATGCTAGGAAAAACCGTTGCGAAAAATCTACAAAATCAAAGCGGAAGCGTACCGCTTTATTCTAACAATGCCAAAATCAAGTTAAAACAACTGTTTAATGAGTTTGATTTTCTTATTTCTAAAGGATTAGATTTTGAT------------ACTTCTTTTGAAGCTATCGGAAAAGAATTAGAACAAACCTATTACCAAACAGAAAGCATTTTAGAAAACCTAGATAAGAAAATTCTTGAGTATGTCGAAGAAAATAAAGCCTATGCACGAC------------CAAACACAAGAATATTAAAAACAATTGAAAACC---------------------TACAAAAGGA------------ACGAACAGACTTACACAAGACCTTAAAACAAGTCGAAA------AAGAAATGC------TTTACTATGACAAGTCCGTTGACCGTTACGAAGAT-TACCAGCAAGAACACACCAAAAAT---------AAAAGTCAACATTCCCCAC---GTTTATAA----------------------- Lactococcus_lactis_pCV56A CATATTATTTTGAATGCCACGAATCCAAAAACACTCAAAAA---------------------------------------ATTTCAACAATCTAAAAGTCAGTTAGAAGAATTGAAAGAAATATCTGATGTTATCTCTAAAGAGTATGGCTGTAAAATTATTGACCGTTCTTTAAA---------AAATTCTCACAAAAAATATCAAGTCTATCTTGCGAAAAATTCTTACCGAAAAGAAATAAAAAGCAAAATCAAATTTTTACTTTCTCATGCAAACAGCTGGAACGATTTTAAAAATAAAGCAACTGCTTTAGGGCTGATTGTTGATGATAAAGGAAA-GTACACCACTTACCAATTG-AGTGGCACTAGTC----------------A-----------------AGAAAGA-------AAAGTCAGAGATAGAAGCCTAAAAAATCAAGCATTCATGAAAGAAGCCATTTCTGAACGCTTGAAAGAAAATGA------AGTGGTTTATACAGAATCAGAAGTCAAAGAACTATGGGAAGATAATCAAACTATTCAAGACAAGGAGCAGGAAACAGAAATTGAAATGCTTATAGAAGATTGGCAAGTCGAAAAACAAACAGCCGATTATTTATATGTAAATATCAACATTGGTTTAGCAAGGGAGCAACGAAAATCTGCAATCAAAATTCCAGCACGTTGCGTTGACAAATTAGAAAATGGCAATTACCAAGTTTTTCTCAAAAAACAAGACCGATTTTATTTTGTTGATAGTAAGAATCCAGAGAACAACAAAATCATGCTAGGAAAAACCGTTGCGAAAAACCTACAAAATCAAAGCGGAAGCGTACCGCTTTATTCTAACAATGCCAAAATCAAGTTAAAACAACTGTTTAATGAGTTTGATTTTCTTATTTCTAAAGGATTAGATTTTGAT------------ACTTCTTTTGAAGCTATCGGAAAAGAATTAGAACAAACCTATTACCAAACAGAAAGCATTTTAGAAAACCTAGATAAGAAAATTCTTGAGTATGTCGAAGAAAATAAAGCCTATGCACGAC------------CAAACACAAGAATATTAAAAACAATTGAAAACC---------------------TACAAAAGGA------------ACGAACAGACTTACACAAGACCTTAAAACAAGTCGAAA------AAGAAATGC------TTTACTATGACAAGTCCGTTGACCGTTACGAAGAT-TACCAGCAAGAACACACCAAAAAT---------AAAAGTCAACATTCCCCAC---GTTTATAA----------------------- Lactococcus_lactis_pIL6 CATATTATTTTGAATGCCACGAATCCAAAAACACTCAAAAA---------------------------------------ATTTCAACAATCTAAAAGTCAACTAGAAGAATTGAAAGAAATATCTGATGTTATTTCTAAAGAGTATGGTTGCAAAATTATTGACCGTAACTTGAA---------AAATTCTCACAAAAAATATCAAGTCTACCTTGCTAAAAATTCTTATCGAAAAGAAATAAAAAGCAAAATCAAATTTTTACTTTCTCATGCCAGCAATTGGAACGATTTTAAAAATAAAGCAACTACTTTAGGTCTGATTGTTGATGATAAAGGAAA-GTACACCACTTACCAATTG-AGTGGCACTAGTC----------------A-----------------AGAAAGA-------AAAGTCAGAGATAGAAGCCTAAAAAATCAAGCATTCATGAAAGAAGCCATTTCTGAACGCTTGAAAGAAAATGA------AGTGGTTTATACAGAATCAGAAGTCAAAGAACTGTGGGAAGATAATCAAACCATTCAAGACAAGGAACAAGAAACAGAAATTGAAATGCTTATAGAAGATTGGCAAGTCGAAAAAGAAACAGCCGATTATTTATATGTGAATATCAACATTGGTTTAGAAAGAGAGCAACGAAAATCTGCAATCAAAATTCCAGCACGTTGTGTTGACAAATTAGAAAATGGCAATTACCAAGTTTTTCTCAAAAAACAAGACCGCTTTTATTTTGTTGATAGTAAAAATCCAGAGAACAACAAAATTATGCTTGGAAAAACCGTTGCGAAAAACCTACAAAATCAAAGCGGAAGCGTACCGCTTTATTCTAACAATGCCAAAATCAAGTTGAAACAACTGTTTAATGAGTTTGATTTTCTTATTTCTAAAGGATTAGATTTTGAT------------ACTTCTTTTGAAGCTATCGGAAAAGAATTAGAACAAACCTATTACCAAACAGAAAGCATTTTAGAAAACCTAGATAAGAAAATTCTTGAGTATGTCGAAGAAAATAAAGCCTATGCACGAC------------CAAACACAAGAATATTAAAAACAATTGAAAACC---------------------TACAAAAGGA------------ACGAACAGACTTACACAAGACCTTAAAACAAGTCGAAA------AAGAAATGC------TTTACTATGACAAGTCCGTTGACCGTTACGAAGAT-TACCAGCAAGAACATACCAAAAAT---------AAAAGTCAACATTCCCCAC---GTTTGTAA----------------------- Lactococcus_lactis_pJM4A CATATTGTGCTTAATGCAACCAACCCCTTGACCTTAAATAA---------------------------------------ATTTCATCAAAATAAAAATGATTTGGAACGATTGAAAGAAATTTCTGATAAGATTTCTAAAGAATATGGCTGTAAAATTATTGTCCGTCCTGAACAAAAATTAGGAAACTCTCACAAAAATTATTTGGTTTATCTTGCTAAAAATTCATATCGAAAAGAGATTAAAAACAAACTTGAATTTTTAATAAACCATTCTCATACGTGGGAAGATTTTAAAGAAAAAGCAAGAGCCTTAAATTTAAAAGTGGACGACACTAA-AAAATATGCCACTTATCTTTTAGAGGGAAGCGAGCA----------------A------------------ACCAAA-------AAAATTAGAGATAGAAGTTTAAAAAATAATAAATTTTTAAAAGAAAATCTCAAAGAACGGATAGAAAAAAATAC------CATTGGTTATTCCGTTGAGGAAGTCGTGAAACTTTGGAATGACAAAGAAAGCATTCAAGAAAAAGGACGAGAAAAAGAAATTGAAATTTTACTTGAACATTGGCAAGTAACAAAAGAAACTGAAAAAGATTTAGTTGTAACCATTGATACTGCATTCGATAAT---------GAAGCAACGATTAAGATACCTGCACGCTGTGTTGACAAATTAGAAAACGGACAGTATAAAATATTTATTAAAAAGGGCGACCGCTTTTCGTATATTGATAAAAAAAGTCCGGCAAACCATAAAATCATGGTTGGGGCAACCGTTGCTAAAAATTTACAAAGACAAAGTGGAAATATCCCTCTTTATTCTGACAATGTTAATATCAAACTCAAACAAGTTTTTCATGAGTTCGATTTCTTAATCAGTCAAGGGCTTGGTTTTGAT------------AGAAGTTTTGAAACCATAGGGGAAGAGTTAAAAGCCACCTATCAAGAAACACAACATCAATTAGACAAGCTAGACACAAAGATTTTAGAATACGTGGAAACAACAAAAACGTTACCTTATG------------AAGATACCTCAATCAGAGATACCATTAAAAACT---------------------TAACAAAAGA------------ACGTGATGATTTGCGAGATACTTTATATAAAGTCGATA------AAAACATTC------AATACTATCAAAAATCAGAACAACGTTTAGAAGCC-TATCAAAAAAATCAAAGTCCAAAA---------CACAAAGCACGTGATGATG---ACTTTGAAATTT----------------AG- Lactococcus_lactis_pNZ712 CATATTGTGCTTAATGCAACTGACCCTTTAACTTTAAATAA---------------------------------------ATTTCATCAAAATAAAAATGATTTGGAACGATTGAAAGAAATTTCTGATAGAATTTCTAAAGAATATGGTTGTAAAATTATTGTCCGTCCTGAACAAAAACTAGGGAATTCTCACAAAAATTATTTGGTCTATCTTGCTCAAATTTCTTACCGGAAAGAGATTAAAAACAAACTTGAATTTTTGATGAACCATTCTCATACGTGGGAAGATTTTAAAGAAAAAGCAAGTGCCTTAAATTTAAAAGTGGACGATACTAA-AAAATATACCACTTATCTTTTAGAGGGAAGCGAACA----------------A------------------ACCAAA-------AAAATTAGAGATAGAAGTTTAAAAAATGATAAATTTTTAAAAGAAAATCTCAAAGAACGGATAGAAAAAAATAC------CATTGGTTATTCCGTTGAGGAAGTCGTGAAACTTTGGAAAGACAAAGAAAGCATTCAAGAAAAAGGACAAGAAAAAGAAATTGAAATTTTACTTGAACATTGGCAAGTAACAAAAGAAACTGAAAAAGATTTAGTTGTAACCATTGATACTGCATTCGATAAT---------GAAGCAACGATTAAGATACCTGCACGCTGTGTTGACAAATTAGAAAACGGACAATATAAAATATTTATTAAAAAGGGCGACCGCTTTTCGTATATTGATAAAAGAAGTCCGGCAAACCATAAAATCATGGTTGGGGCAACCGTTGCTAAAAATTTACAAAGACAAAGTGGAAATATCCCTCTTTATTCTGACAATGTCAATATCAAACTCAAACAAGTTTTTCATGAGTTCGATTTCTTAATCAGTCAAGGGCTTGGTTTTGAT------------AGAAGTTTTGAAACCATAGGGGAAGAGTTAAAGGCCACCTATCAAGAAACACAACATCAATTAGACAAGCTAGACACAAAGATTTTAGAGTACGTGGAAACAACAAAAACCTTGCCTTATG------------AAGATACCTCTATCAGAGATACCATTAAAAACT---------------------TAACAAAAGA------------ACGTGATGATTTGCGAGATACTTTATATAAAGTCGATA------AAAACATTC------AATACTATCAAAAATCAGAACAGCGATTAGAAGCC-TATCAAAAAAATCAAAGTCCAAAA---------CACAAAGCACGTGATGATG---ACTTTGAAATTT----------------AG- Lactococcus_lactis_pRS01 CATATCATTTTTAATTCTACGAATCTTTATACTGGCAAACAATTTGACTGGAAAGTCATTCCTAAAGAGAAAACAAAAAGCGGCAAAGCTTATGATGTGACCAAAAATAATTTTGAAAAAGTCTCTGATAAAATTGCTTCACGTTATGGCGCAAAAATTATTGAAAA---------GTCTCCAGGTAACTCTCACTTAAAATATACAAAATGGCAAACTCAGTCCATTTATAAAAGTCAAATCAAACAACGGTTAGACTATCTTTTAGAAATGTCATCAGATATTGAAGACTTCAAAAGAAAAGCAACGGCTTTAAATTTATCCTTTGATTTTTCTGGCAAGTGG-ACCACTTATCGGCTGCTTGATGAACCTCAAATGAAAAACACACGTGGACGGAATCT--------------------------------TGATAAAAATCGTCCTGAAAAATACAATTTGGAATCTATTATTGAACGGCTCGAAACAAATGA------GCTTTCACTTACGGTTGATGAAGTA------GTGGAGCGGTATGAGGAAAAAGTTGACGTAGTTAAACAAGATTTTGATTATCAAGTTACGGTTGAAAAAGGGCAAATTGACCACATGACAAGTAAAGGATTTTACCTTAACGTTGACTTTGGGATTGCGGAT---------CGTGGTCAAATTTTTATTGGCGGTTATAAAGTTGACCAACTTGAAAATAGGGACTGCGTGCTTTATCTGAAGAAGAATGAAACCTTTCGTCTTTTGAGTGAAAAGGAGGCCTCCTTCACCAAGTATTTGACTGGTCATGACCTCGCAAAACAGTTAGGGCTTTATAATGGAACTGTTCCTTTAAAGAAAGAACCTGTGATATCCACAATTAATCAGTTGGTCGATGCGATTAACTTTTTAGCTGAACACGGCGTTACTGAAGGGACTCAATTTAATAATA------------TGGAGAGCCAACTCATGAGCGCTCTTGGGGAGGCGGAAGAAAAACTTTATGTTATTGATAATAAAATTATGGAGTTAACCAAAATTGCAAAGTTACTCATTGAAAAAGAGTCGGATCATTCTCAAGCGGTTATTAATGAATTAGAGAAT------------------CTAGGAGTGGGTCCGTCAATA---AAATATCAAGACATTCACCAAGAACTTCAGTCTGAAAAAATGAGTCGAAAAATACTCAAAAACAAATTTGAACAAACCGTTGATGAGATTAATACT-TTCAATGAAATTAGAGTTACTACCCTTGAA--GAAAATAAAGGAAAAATACTATAA------------------------------ Lactococcus_lactis_pSK11P CATATTGTGCTTAATGCAACTGACCCTTTAACTTTAAATAA---------------------------------------ATTTCATCAAAATAAAAATGATTTGGAACGATTGAAAGAAATTTCTGATAGAATTTCTAAAGAATATGGTTGTAAAATTATTGTCCGTCCTGAACAAAAACTAGGGAATTCTCACAAAAATTATTTGGTCTATCTTGCTCAAATTTCTTACCGGAAAGAGATTAAAAACAAACTTGAATTTTTGATGAACCATTCTCATACGTGGGAAGATTTTAAAGAAAAAGCAAGTGCCTTAAATTTAAAAGTGGACGATACTAAA-AAATATACCACTTATCTTTTAGAGGGAAGCGAACA----------------A-----------------ACCAAAA-------AAAATTAGAGATAGAAGTTTAAAAAATGATAAATTTTTAAAAGAAAATCTCAAAGAACGGATAGAAAAAAATAC------CATTGGTTATTCAGTTGAGGAAGTCGTGAAACTTTGGAATGACAAAGAGAGTATTCAAGAAAAAAATCAAGAAAAAGAAATTTCAATTTTGGTAGAAGATTGGCAAATTGAGAAAGAAACTGAAAATTTTTTATACGTAACGATTGATACTGCTTTAGATAAA---------GAAGCGACAATAAAGATACCTGCACGCTGTGTCGATAAATTAGAAAATGGCGATTATCAAGTCTTTATCAAAAATAAAGACCGATTTTCTTATCTTGATAAGAAAAGTCCGGCAAACAATAAAATCATGTATGGAACAACTGTTGCTAAAAATCTACAACGACAAAGTGGAAATGTCCCTCTTTATTCTGACAATGCCAATATCAAACTCAAACAAGTCTTTCATGAGTTCGATTTCTTGATTAGTCAAGGACTTGGTTTTGAT------------AGAAGTTTTGAAACCATAGGAAAGGACTTAAAAGCCACCTATCAAGAAACAGAAAACGAATTAGATAAATTAGATACAAAGATTATAGAGTATGTCGAACAAAACAAAAGTTTAGATTATG------------TAGATACCACTATCAGAGATACAATAAAAAATC---------------------TAAAACTTGA------------ACGTGATGATTTAAGAGATACTTTATATAAAGTCGATA------AAAACATTC------AATACTATCAAAAATCAGAACAGCGATTAGAAGCC-TATCAAAAAAATCAAAGTCCAAAA---------CATAAAGCACGTGATGATG---ATTTTGAAATTT----------------AG- Lactococcus_lactis_pUC063C CATATTGTGCTTAATGCAACTGACCCTTTGACTTTAAATAA---------------------------------------ATTTCAACAATCAAAAAATGATTTGGAACGATTGAAAGAAATTTCTGATAAGATTTCTAAAGAATATGGCTGTAAAATTATTGACCGTCCTGAACAAAAATTAGGAAACTCTCACAAAAATTATTTGGTCTATCTTGCTCAAAATTCTTACCGAAAAGAGATTAAAAACAAACTTGAATTTTTAATGAACCATTCTCACACGTGGGAAGATTTTAAAGAAAAAGCAAGAGCCTTAAATTTAAAAGTGGACGACACAAA-AAAATATACCACTTATCTTTTAGAGGGAAGCGAACA----------------A------------------ACCAAA-------AAAATTAGAGATAGAAGTTTAAAAAATGATAAATTTTTAAAGGAAAATCTAAAAGAACGGATAGAAAGAAACAC------CATTGGTTATTCAGTTGAGGAAGTCGTGAAACTTTGGAATGACAAAGAAAGCATTCGAGAAAAAGGACAAGAAAAAGAAATTGAAATGTTACTTGAACATTGGCAAGTAACAAAAGAAACTGAAAAAGATTTAGTTGTAACCATTGATACTGCATTCGATAAT---------GAAGCAACGATTAAGATACCTGCACGCTGTGTTGACAAATTAGAAAACGGACAATATAAAATATTTATTAAAAAGGGCGACCGCTTTTCGTATATTGATAAAAGAAGTCCGGCAAACCATAAAATCATGGTTGGGGCAACCGTTGCTAAAAATTTACAAAGACAAAGTGGAAATATCCCTCTTTATTCTGACAATGTCAATATCAAACTCAAACAAGTTTTTCATGAGTTCGATTTCTTAATCAGTCAAGGACTTGGTTTTGAT------------AGAAGTTTTGAAACCATAGGAGAAGAGTTAAAAGCCACCTATCAAGAAACACAACATCAATTAGACAAGCTAGACACAAAGATTTTAGAATACGTGGAAACAACAAAAACCTTGCCTTATG------------AAGATACCTCTATCAGAGATACCATTAAAAACT---------------------TAACAAAAGA------------ACGTGATGATTTGCGAGATACTTTATATAAAGTCGATA------AAAACATTC------AATACTATCAAAAATCAGAACAGCGATTAGAAGCC-TATCAAAAAAATCAAAGTCCAAAA---------CATAAAGCACGTGATGATG---ATTTTGAAATTT----------------AG- Lactococcus_lactis_pUC77B CATATTGTGCTTAATGCAACCAACCCCTTGACCTTAAACAA---------------------------------------ATTTCAACAAAATAAAAATGATTTGGAAACTTTAAAAGAGATTTCTGACCGTATCTCTAAAGAATATGGCTGTAAAATTATTGTCCGTCCTGAACAAAAACTAGGGAATTCTCACAAAAATTATTTGGTCTATCTTGCTCAAAATTCTTACCGGAAAGAGATTAAAAACAAACTTGAATTTTTAATGAACCATTCTCACACGTGGGAAGATTTTAAAACAAAAGCAAGCGCCTTAAATTTAAAAGTGGACGACACAAA-AAAATATACCACTTATCTTTTAGAGGGAAGCGAACA----------------A------------------ACCAAA-------AAAATTAGAGATAGAAGTTTAAAAAATGATAAATTTTTAAAGGAAAATCTCAAAGAACGGATAGAAAGAAACAC------CATTGGTTATTCCGTTGAGGAAGTCGTGAAACTTTGGAATGACAAAGAAAGCATTCAAGAAAAAGGACAAGAAAAAGAAATTGAAATGTTACTTGAACATTGGCAAGTAACAAAAGAAACTGAAAAAGATTTAGTGGTAACCATTGATACTGCATTCGATAAT---------GAAGCAACGATTAAGATACCTGCACGCTGTGTTGATAAATTAGAAAACGGACAATATAAAATATTTATTAAAAAGGGCGACCGCTTTTCGTATCTTGATAAAAGAAGTCCGGCAAACCATAAAATCATGGTTGGGGCAACCGTTGCTAAAAATTTACAGAGACAAAGTGGAAATATCCCTCTTTATTCTGACAATGTCAATATCAAACTCAAACAAGTTTTTCATGAGTTCGATTTCTTAATCAGTCAAGGACTTGGTTTTGAT------------AGAAGTTTTGAAACCATAGGAGAAGAGTTAAAAGCCACCTATCACGAAACAGAAAAGCAATTAGATAAATTAGATACAAAGATTATAGAGTATGTCGAACAAAACAAAAGTTTAGATTATG------------TAGATACCACTATCAGAGATACAATAAAAAATC---------------------TAAAACTTGA------------ACGTGATGATTTAAGAGATACTTTATATAAAGTCGATA------AAAACATTC------AATACTATCAAAAATCAGAACAGCGATTAGAAGCC-TATCAAAAAAATCAAAGTCCAAAA---------CATAAAGCACGTGATGATG---ATTTTGAAATTT----------------AG- 'Lactococcus raffinolactis Str_4877' CATATTATTTTTAATACAACAAATTCTACAACCCTTAAAAA---------------------------------------ATTCAGATGGCAAAAGGGTACAACTCAAAGCCTACGAAATATTTCCGATAAACATGCGGACATTGCAGGTGCTAATATTTTAAGCAA---------CACAATGAAAAACTCGCATAAGAAATATTCTGCCTATCAACGAAAAAATAATTTTAAAATTGAAATAAAGGAACGTTTAAATTTTTTACTGAAGCACTCTACTTCTATTTATGATTTTAAAGCAAAAGCTAAAGCTCTCAATCTGATAATTGATGATACAGGTAAAAAT-GTAAAGTATCGTCTTGCAGATATGGAACA----------------------------------AAAAAGAAATACACGTGATGA----TACACTTTCAAAACGTGGAAAATATTCTATATCTAATATTGAAAAAATTGTCTCTAAAAATGT------------TTCTGTATTCTCTCAATCTGAAATAAAAAATGAATATGAAAAATTTAAAGTAGAAAAAAGTGATGATTTTGAAATGAAAATTTTAGTTGAAGATTGGCAAGTAAAAGAGGAAACAAAAAATGGTATCTATATTGACATTGATTATGGACTACTTAAT---------AGTGGGGCTATATTAGTACCCTCACACCAAGTCAATAAACTTGATGATGGTAACTATAATATTTTTATCAAGAAAAAAGATTTTTTCTATTTCACAAATTCTGATGATGCGACTAAAAATAAATTTATGACTGGTAACATAGTTGCCAAGCAATTGTCTCATGATAATCAGCATCTAGTGCTTCACAAAAATCAATATATATCAAAACTTGATCAGATCATCAAAGATTTTGAGTATCTCTCTTTAAAAGGTGTTTCAACTGGT------------CAACAGTTTTCAGATTTAAAAAATCAATTTGAAAATCAGGTTCATGAAACAGAAAAAGAGCTATCTGTTTTAGATGAAAAAATTTCTCGTATGAACAAAATCATCAGTGCAATTGATGGTC------------TCAATTCTGATGATTTGAGAAAAGTTGAAACTTCTGAAGCAATTTTATCAGACTTAAAAATTGATAAATCGACTAAGAGAGGTGATCTAATTAAAACTATCGAGGAAGTAAAGT------TTGAAAGAC---AAGTGTTAAATGAACGATTTCAAGATATTGTTGAGAAA-TATAAAACCTATCAGGGTGTCAAAGAAAAT---GTTAGAGATCGAGAAAATGATACTATCAAAAATA-AAGAGGTCAAGAGATAA- ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M58878] TITLE Lactococcus_lactis_Alignment_of_17_Relaxases_Exon1; LINK TAXA = Taxa1; DIMENSIONS NCHAR=506; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Enterococcus_faecalis_pTEF4 ATGGTGTATACAAAACATTTTGTTATTCATACATTTGATAAATTAAACAATGCTTGCTCATATATTGAGAATGCAGAAAAAACTGAAGTTACGAATGATAATCCGTCTGAACACTTGGAACATTTATTTCAATATATTGTGAATGACGATAAGACGTACATGAAAAAA----TTAGTTTCTGGGCATGGCATTGTAGATCCAACAAATCCTTATGAAGAATTT-------AAATTAACAAAATTACAAGCAGCAATTCAACGAAAAATCGGGTACACATTCGATCCAAAATCAGAAC---------GATTGCTTCCGCCAACGTTAACAGAATTAGAAAAAGGCAACGCCGTTTTAGCACACCATTTAATCCAATCCTTTTCTCCAGAAGATGATTTAACGCCAGAAAAAATACATGAAATAGGGTACAACACGGTGATGGAATTGACGGGTGGAGAGTATGAATTTGTGATCGCCACACATGTCGATAAAGAACATTTACACAAT 'Lactococcus lactis 1064_C11' ----------------------------------------------------------------------------------------------------------------ATGACTGTGATTAACATGCCTAATAAATCGAAAGGAACATTACACAGTAAACAAGGACTTTCTAGCGCTTTAAAATATATTACTGACCCACAAAAAACAAATAACGGTGAATTAGTATCAGGACAAAACATAAACA----------------------TTCCAAGCAATGCCTATGATGAAATGTTACTGACAAGAGAAATGGCAATTTTAGCTGGTAATCAACCAAAAGAAAATGAACGATTTGGTTTTCATTTTGTACAATCTTTTTCGCCAGAAGATAATTTAACACCAGAACAAGTGCATGAGATTGGCTTAAAAACCATGAAAGCTTATCTAGGCGAATCCGTAGAATTTGTTATTGCAACACATACCGACAAAGAACACTTACACAAC Lactococcus_lactis_1AA59 ----------------------------------------------------------------------------------------------------------------ATGACAGTCATTAAAATGCCAAAACAATCGAACGGAACGGTTCATTCTTCAAAAGATTTAAACCAACTCATTGATTATGTGATGAACCCTGAAAAAACAAATGACTTTGAATATGTTTCCGGTCAAAATATTTTAG----------------------ATATTCACTCAACCTGTGATGAAATGTTAGCGACACGAACAATGGCAAATGCTTTAAAAAACAAGCCACGAAAAAACGAAAGGTTTGGTTATCATTTTGTCCAATCTTTTTCTCCTGATGACCATTTAACGCCTGAACAAGCTCATGAAATTGGTTTAAAAACCATGAAAGAATATCTCGGAAATTCTGCGGAATTTATTATTGCCACTCATACTGATAAAGACCACTTGCATAAT Lactococcus_lactis_CF103 ----------------------------------------------------------------------------------------------------------------ATGACAGTCATTAAAATGCCAAAACAATCGAACGGAACAATTCATTCTTCAAAAGATTTAAACCAACTCATTGATTATGTGATGAACCCTGAAAAAACAAATGACTTTGAATATGTTTCCGGTCAAAACATTTTAG----------------------ATATTCATTCAACCTGTGATGAAATGTTAGCGACACGAACAATGGCAAATGCTTTAAAAAACAAGCCACGAAAAAACGAAAGGTTTGGTTATCATTTTGTCCAATCTTTTTCTCCTGATGACCATTTAACGCCTGAACAAGCTCATGAAATTGGTTTAAAAACCATGAAAGAATATCTAGGAAGTTCTGCGGAATTTATTATTGCCACTCATACCGATAAGCCACACCTCCATAAT Lactococcus_lactis_CF112 ----------------------------------------------------------------------------------------------------------ATGCCCA---CGACTAAATCTTTAA--CTATTCAAAATG--AAAGAAACCTTCAAAGAGCAA----TTAAAT----------ACATTTTAAATCCTGAAAAAACAAATGGTCAAACTTTGACAAGTGGTTACAAAATTAACTATGTCAA-TAATGCAGACTTCGAGATGAAACTGACTCGGAAAATGG------------CCCGACTTGCGTTAGGACAATCAAATAAAAAATCAGACCAAGAAGTGGTCGCTCGTCATCTCATTCAAGCGTTTGACCCAAATGATAATCTCACTCCTGAAGAAATTCATGAGATTGGTCGACAAACTGTTTTAGAGCTTACAGGTGGAAATCATGAGTTTGTTATTGCAACACACGTCGACCAAGACCATATTCACAAT Lactococcus_lactis_DmW198 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAAGGGAACCTTTTCTAATGGAAAAGGAAAAGTTTTTGCACATCATATCATTCAATCTTTTGATCCAAAAGATAATATTACTCCTGAACAAGCTCATGAGATCGGTGAAAAGATGATGCTGCAATTTACTGAAGGGAAGCATGAGTTTGTCATTGCTACACACGTTGACCAAGATCACATTCATAAT Lactococcus_lactis_HP ----------------------------------------------------------------------------------------------------------------ATGACAGTGATTTATATGCCAAAACAATCGAACGGAACGGTTCATTCCGCAAAAGATTTAAAACAACTCATTGATTATGTGATGAACTCCGAAAAAACAAATGACTTTGAATATGTTTCCGGTCAAAATATTTTAG----------------------ATATTCATTCAACCTGTGATGAAATGTTAGCGACACGAACAATGGCAAATGCTTTAAAAAACAAGCCACAAAAAAATGAAAGGTTCGGTTATCATTTTGTCCAATCTTTTTCTCCTGATGACCATTTAACCCCTGAACAAGTTCATGAAATTGGTTGTAAAACCATGAAAGAATATCTCGGAAGTTCTGCGGAATTTATTATTGCTACTCACACCGATAAGCCACACCTCCATAAT Lactococcus_lactis_KLDS ATGGTTTACACGAAACATTTTGCGATTCACATGATTGATCGCTTGCGCAATTCCAAAGATTATATTGAGAACGCCGCAAAGACCTTGGTTGAAAAATCAGAAGTAACAGGGCATTTGGATAATCTGTTTCCTTACATGATGAATGATGCCAAGACTTTTGCTAAACAG----TTGGTCTCAGGTTACATGATTCATAATGTCTATGAAGCCTCGGAAGAGTTCATTGCGACCAAACAACT-------TGCGGCAAAAGAAAATGGCGAGCATTTTGTCTTTAATCCTAAAACCAAGCGACTGGAGTTTTCCTTGAAAAGTTTGGAGCAAGCGAAAAATGGTAAACAAGCGGTGCTGGCTTATCACTTGATTCAGTCTTTTTCTCCTGAAGACGGTTTAAGCCCTGAAGAAGTTCATGAGTTGGGCCGACAAACGATTCTAGAATTAACAGGTGGGGAGTATGAGTTTGTCATTGCGACGCACGTTGATAAAGCCCATTTGCATAAT Lactococcus_lactis_LMG9447 ------------------------------------------------------------------------------------------------------------------ATGGTTGTTGTTCCAAAACCTAAGCAAATTC------GTTCAGAGAAAGCACTA----AAAAGTGCTGTTAAATATATTTTAAATCCTGATAAAACCGATGAACAAGTTTTAACAAGTGGCTATCATATTTCTAATTTAA-------A------------------CTATGCGGATGTTGAAATGAATTACACCAGAATATTGGCTAGAAAAATGGTTGGACGACAAAAAAAGCAAGTTTTAGCTCATCACTTAGTTCAATCTTTTCGTCCAGAGGATGGCTTATCTGCGGAAGAAATTCATCAGATTGGAAGAGAATGGATAGAGGAGTTGACCGGTGGAAGTCATGAATATATTATTGCAACCCACGTTGACAAAAATCATATTCACAAC Lactococcus_lactis_pAF12 ----------------------------------------------------------------------------------------------------------------ATGACTGTGATTAACATGCCTAATAAATCCAAAGGAACATTACACAGTAAACAAGGACTTTCTAGTGCTTTAAAATATATTATTGACCCTCAAAAAACAAATAACGGTGAATTAGTATCAGGACAAAATATAAACG----------------------TTCCAAGCAATGCCTATGATGAAATGTTACTGACAAGAGAAATGGCAATTTTGAGTGGAAAAAAACCAAGAGAAAATGAAATTTTTGGTTATCATTTCACACAATCTTTTTCGCCAGAAGATAATTTAACACCAGAACAAGTGCATGAAATTGGATTAAAAACCATGAAAGCCTATCTAGGCGAATCCGCAGAATTTGTTATCGCCACACATACCGACAAAGAACACTTACACAAC Lactococcus_lactis_pAH82 ----------------------------------------------------------------------------------------------------------------ATGACAGTGATTTATATGCCGAAACAATCGAACGGAACGGTTCATTCTTCAAAAGATTTAAACCAACTCATTGATTATGTGATGAACCCTGAAAAAACAAATGACTTTGAATATGTTTCCGGTCAAAACATTTTAG----------------------ATATTCATTCAACCTGTGATGAAATGTTAGCGACACGAACAATGGCTATCGCTTTAAAAAACAAGCCACGAAAAAATGAAATTTACGGTTATCATTTTGTCCAATCTTTTTCTCCTGATGACCATTTAACCCCTGAACAAGTTCATGAAATTGGTTGTAAAACCATGAAAGAATATCTCGGAAATTCTGCGGAATTTATTATTGCTACTCATACCGATAAGCCACACCTCCATAAT Lactococcus_lactis_pJM4A ----------------------------------------------------------------------------------------------------------------ATGACAGTGATTTATATGCCAAAACAATCGAACGGAACAGTTCATTCTTCAAAAGATTTAAACCAACTCATTGATTATGTGATGAACCCTGAAAAAACAAATGACTTTGAATATGTTTCCGGTCAAAACATTTTAG----------------------ATATTCATTCAACCTGTGATGAAATGTTAGCGACACGAACAATGGCAAACACTTTAAAAAACAAGCCACAAAAAAATGAAAGGTTCGGCTATCATTTTGTACAATCTTTTTCTCCTGATGATCATTTAAC-CCTGAACAAGTTCATGAAATTGGTTTAAAAACCATGAAAGAATATCTAGGAAGTTCTGCGGAATTTATTATTGCCACTCATACCGATAAGCCACACCTCCATAAT Lactococcus_lactis_pRS01 ATGGTTTACACAAAACACATTATTGTTCATAAATTAAAACATTTACGCCAGGCAAAAGACTATGTAGAAAATGCGGAAAAAACTTTGGTGAATGAAAGTAACG---AAGATCATCTCACAAATCTTTTTCCTTATATTTCAAATCCAGACAAGACAATGAGTAAGCAA----CTTGTTTCTGGTCATGGTATCACAAATGTTTATGATGCGGCCAATGAATTTATTGCGACA----AAAAAATTAAAA---GCACTATCCAAAGGAACTGACTTTAATTTTGATCCGCAAACTG------------GAAAGGTAAGATTCAATGTAGAAAGCTTAGAGAAAAATAATGCGGTGCTTGGTCATCACCTCATCCAATCATTTTCTCCTGATGACAATCTAACTCCTGAACAAATTCATGAAATAGGTCGTCAAACCATATTAGAATTTACAGGTGGCGAATATGAATTTGTGATTGCAACCCACGTCGATCGTGAACACATCCATAAC Lactococcus_lactis_pSK11P ----------------------------------------------------------------------------------------------------------------ATGACCGTAATTTATATGCCGAGAGATACAAGTGGAGTAATTCATAGTCAAGGGCAACTCTCACGAGCGCTGAATTATATTGTCAATCCAGAAAAAACAAAAGGTGGAGAGTTAGTATCAGGTCAAAATATAAACG----------------------TGCCAAGCAATGCCTATAATGAAATGTTACTGACAAGAGAAATGGCAATTTTAGCTGGAAATCAACCGAAAGAAAATGAACGATTTGGTTTTCATTTTGTACAATCTTTTTCGCCAGAAGATAATTTAACACCTGAACAAGTTCATGAAATTGGATTAAAAACCATGAAAGCATATCTAGGTGAATCCGCAGAATTTGTTATCGCCACACATACCGACAAAGAACACTTACACAAC Lactococcus_lactis_pUC063C ----------------------------------------------------------------------------------------------------------------ATGACAGTGATTTATATGCCGAAACAATCAAACGGAACAATTCATTCTTCAAAAGATTTAAGACAACTTATTGATTATGTGATAAACCCTGAAAAAACAAATGATTTTGAATATGTCTCCGGTCAGAATATTTTAG----------------------ATGTTCAATCGACTTGTGATGAAATGTTAGCCACAAGAACAATGGCAAATGCTTTAAAAAACAAGCCACGAAAAAATGAAAGGTTCGGCTATCATTTTGTCCAATCTTTTTCTCCTGATGATCATTTAACCCCTGAACAAGTTCATGAAATTGGTTGTAAAACCATGAAAGAATATCTTGGAAATTCTGCGGAATTTATTATTGCCACTCATACCGATAAGCCACACCTCCATAAT Lactococcus_lactis_pUC77B ----------------------------------------------------------------------------------------------------------------ATGACAGTCATTAAAATGCCAAAACAATCGAACGGAACGGTTCATTCTTCAAAAGATTTAAACCAACTCATTGATTATGTGATGAACCCTGAAAAAACAAATGACTTTAAATATGTTTCCGGTCAAAACATTTTAG----------------------ATATTCATTCAACCTGTGATGAAATGTTAGCGACTCGAACAATGGCAAATGCTTTAAAAAACAAGCCACGAAAAAATGAAATTTACGGTTATCATTTTGTCCAATCTTTTTCTCCTGATGACCATTTAACGCCTGAACAAGCTCATGAAATTGGTTGTAAAACCATGAAAGAATATCTTGGAAATTCTGCGGAGTTTATTATCGCCACTCATACTGATAAAGACCACCTGCATAAT 'Lactococcus raffinolactis Str_4877' ------------------ATGCAAATAAAAACACCTGAACGTTTAACAAGGTCTGTCAAATATATTTTAAACCCTAAAAAAACAAATGTACCTTATGTAGAAA-----------CTGAAAAA-GATTTTCCA---GTCACATTTACTGAAGATAAAAAAATGATGCAA----TTGGTTTCAGGGCATCAAATTTCAAATGTAAATTATGCTGATCAAGAATTTTTTCTAACA--------------------------------------------AAGATAATGGCTAATGCT-----------AGCAATGGCAATCCTGATAATTCTGACATGAACAATCCTAATCGAGTAATGGCACATCATATTGTGCAATCATTTGCCCCTGATGAAAACTTAACTCCTGAAGAAATTCATGAACTAGGGAGAAAAACAGTTTTAGAATTGACTGGTGGCGATCATGAGTTCATAGTAGCAACTCATGTTGACCAAGATCATATCCATAAT ; END; BEGIN TREES; TITLE Lactococcus_lactis_17_Relaxases_Exon1; LINK TAXA = Taxa1; TRANSLATE 1 'Lactococcus lactis 1064_C11', 2 Lactococcus_lactis_1AA59, 3 Lactococcus_lactis_CF103, 4 Lactococcus_lactis_CF112, 5 Lactococcus_lactis_DmW198, 6 Lactococcus_lactis_HP, 7 Lactococcus_lactis_KLDS, 8 Lactococcus_lactis_LMG9447, 9 Lactococcus_lactis_pAF12, 10 Lactococcus_lactis_pAH82, 11 Lactococcus_lactis_pJM4A, 12 Lactococcus_lactis_pRS01, 13 Lactococcus_lactis_pSK11P, 14 Enterococcus_faecalis_pTEF4, 15 Lactococcus_lactis_pUC063C, 16 Lactococcus_lactis_pUC77B, 17 'Lactococcus raffinolactis Str_4877'; TREE 'Imported tree 1+' = [&R] (14:0.18876327,((17:0.87399055,(12:0.28183337,7:0.58828282):0.14110116):0.15755192,((8:0.83998659,(5:0.62123763,4:0.22800196):0.01324984):0.22160852,(13:1.375E-5,((9:0.0595515,1:0.03095642):0.11047627,(11:5.17E-6,((3:0.00539938,(16:0.03956816,2:0.00957805):0.02778444):0.0218883,(6:0.02776193,(15:0.06850049,10:0.02213623):0.00580247):0.01418924):0.02042447):0.5314216):0.09700163):1.30326087):0.37430732):0.18876327); END; BEGIN TREES; TITLE Lactococcus_lactis_22_Relaxases_Exon2; LINK TAXA = Taxa2; TRANSLATE 1 Lactococcus_lactis_1064.C11, 2 Lactococcus_lactis_1AA59, 3 Lactococcus_lactis_CF103, 4 Lactococcus_lactis_CF112, 5 Lactococcus_lactis_DmW198, 6 Lactococcus_lactis_G50, 7 Lactococcus_lactis_HP, 8 Lactococcus_lactis_KLDS, 9 Lactococcus_lactis_LMG9447, 10 Lactococcus_lactis_p275D, 11 Lactococcus_lactis_pAF12, 12 Lactococcus_lactis_pAH82, 13 Lactococcus_lactis_pCV56A, 14 Lactococcus_lactis_pIL6, 15 Lactococcus_lactis_pJM4A, 16 Lactococcus_lactis_pNZ712, 17 Lactococcus_lactis_pRS01, 18 Lactococcus_lactis_pSK11P, 19 Enterococcus_faecalis_pTEF4, 20 Lactococcus_lactis_pUC063C, 21 Lactococcus_lactis_pUC77B, 22 'Lactococcus raffinolactis Str_4877'; TREE Imported_tree_1 = [&R] (19:0.19129279,((8:0.4479691,17:0.41031802):0.14241267,(22:0.66048518,((6:0.94886091,(4:0.55100584,(9:0.0327544,5:0.05957291):0.90539092):0.04004332):0.06990267,((11:0.00405405,((12:0.00942174,13:0.00352207):0.01161542,(1:0.01539034,14:0.0097581):0.00784311):0.00625033):0.34523065,((18:0.0033208,10:0.00523177):0.01942742,(21:0.02273945,(16:0.0108926,((20:0.00545002,2:0.01434482):0.00888186,(15:0.01638061,(7:0.01084973,3:0.02637347):0.01132528):0.00933318):0.00628625):0.03628442):0.05622677):0.19416618):0.58093827):0.07878843):0.43984969):0.19129279); END; BEGIN TREES; TITLE Lactococcus_lactis_17_Full_Length_Relaxases; LINK TAXA = Taxa1; TRANSLATE 1 'Lactococcus lactis 1064_C11', 2 Lactococcus_lactis_1AA59, 3 Lactococcus_lactis_CF103, 4 Lactococcus_lactis_CF112, 5 Lactococcus_lactis_DmW198, 6 Lactococcus_lactis_HP, 7 Lactococcus_lactis_KLDS, 8 Lactococcus_lactis_LMG9447, 9 Lactococcus_lactis_pAF12, 10 Lactococcus_lactis_pAH82, 11 Lactococcus_lactis_pJM4A, 12 Lactococcus_lactis_pRS01, 13 Lactococcus_lactis_pSK11P, 14 Enterococcus_faecalis_pTEF4, 15 Lactococcus_lactis_pUC063C, 16 Lactococcus_lactis_pUC77B, 17 'Lactococcus raffinolactis Str_4877'; TREE 'Imported tree 1+' = [&R] ((5:0.07778595,8:0.08158217):0.33840597,(4:0.4122484,((7:0.41618789,(12:0.38244045,14:0.49496805):0.08293946):0.36775026,(17:0.67001834,((10:1.1334E-4,(1:0.02971834,9:0.01611562):0.10951581):0.24664481,(3:0.00587271,((13:0.18402029,16:0.01805849):0.02337626,(2:0.01790727,(15:0.02264735,(6:0.02356683,11:0.01749786):0.01114759):0.00957262):0.01528471):0.02581987):0.15357911):0.63970676):0.12359246):0.32007677):0.33840597); END; BEGIN TREES; TITLE Lactococcus_lactis_17_Relaxases_Exon2; LINK TAXA = Taxa1; TRANSLATE 1 'Lactococcus lactis 1064_C11', 2 Lactococcus_lactis_1AA59, 3 Lactococcus_lactis_CF103, 4 Lactococcus_lactis_CF112, 5 Lactococcus_lactis_DmW198, 6 Lactococcus_lactis_HP, 7 Lactococcus_lactis_KLDS, 8 Lactococcus_lactis_LMG9447, 9 Lactococcus_lactis_pAF12, 10 Lactococcus_lactis_pAH82, 11 Lactococcus_lactis_pJM4A, 12 Lactococcus_lactis_pRS01, 13 Lactococcus_lactis_pSK11P, 14 Enterococcus_faecalis_pTEF4, 15 Lactococcus_lactis_pUC063C, 16 Lactococcus_lactis_pUC77B, 17 'Lactococcus raffinolactis Str_4877'; TREE Imported_tree_1 = [&R] (14:0.24943411,(12:0.40459846,(7:0.41637945,(17:0.61908018,((4:0.46947127,(8:0.04601271,5:0.04751131):0.84335368):0.18204892,((9:0.00508415,(10:0.01813111,1:0.02095498):0.00725956):0.33020974,(13:0.02310095,(16:0.01493777,((15:0.00581628,2:0.01431361):0.00804279,(11:0.01618003,(3:0.02798614,6:0.01100449):0.01137834):0.00949293):0.04127775):0.06549895):0.22181711):0.67260991):0.13926758):0.45482059):0.10215904):0.24943411); END; BEGIN TREES; TITLE Lactococcus_lactis_22_Relaxases_Exon1; LINK TAXA = Taxa2; TRANSLATE 1 Lactococcus_lactis_1064.C11, 2 Lactococcus_lactis_1AA59, 3 Lactococcus_lactis_CF103, 4 Lactococcus_lactis_CF112, 5 Lactococcus_lactis_DmW198, 6 Lactococcus_lactis_G50, 7 Lactococcus_lactis_HP, 8 Lactococcus_lactis_KLDS, 9 Lactococcus_lactis_LMG9447, 10 Lactococcus_lactis_p275D, 11 Lactococcus_lactis_pAF12, 12 Lactococcus_lactis_pAH82, 13 Lactococcus_lactis_pCV56A, 14 Lactococcus_lactis_pIL6, 15 Lactococcus_lactis_pJM4A, 16 Lactococcus_lactis_pNZ712, 17 Lactococcus_lactis_pRS01, 18 Lactococcus_lactis_pSK11P, 19 Enterococcus_faecalis_pTEF4, 20 Lactococcus_lactis_pUC063C, 21 Lactococcus_lactis_pUC77B, 22 'Lactococcus raffinolactis Str_4877'; TREE 'Imported tree 1+' = [&R] (19:0.29793607,(8:0.52810838,(17:0.31657267,(22:0.96313655,((9:0.66673365,(4:0.32600486,(5:0.01314618,6:0.00121706):0.56066645):0.06418422):0.31629086,(((11:0.0611681,1:0.02969446):0.10557171,(13:0.00434127,(18:0.00312325,14:1.3E-7):0.00500601):0.09490339):0.23259663,(15:5.7E-6,((3:0.00539195,(21:0.03930496,2:0.00934232):0.02753969):0.02220586,((7:2.1E-7,10:0.00307905):0.02731644,(20:0.06790982,(12:2.3E-7,16:0.00932266):0.02157705):0.00598484):0.01359731):0.02024538):0.33612764):0.72349291):0.18963682):0.12728488):0.14241482):0.29793607); END;