CiteULike

Delicious

Connotea

Citation for Study 28407

Citation title: "Genome-wide identification and characterization of caffeoyl-coenzyme A O-methyltransferase genes related to the Fusarium head blight response in wheat".

Study name: "Genome-wide identification and characterization of caffeoyl-coenzyme A O-methyltransferase genes related to the Fusarium head blight response in wheat".

This study is part of submission 28407 (Status: Published).

Citation

Yang G., Pan W., Zhang R., Pan Y., Guo Q., Zheng W., & Nie X. 2021. Genome-wide identification and characterization of caffeoyl-coenzyme A O-methyltransferase genes related to the Fusarium head blight response in wheat. BMC Genomics, 22: 504.

Authors

• Yang G.
• Pan W.
• Zhang R.
• Pan Y.
• Guo Q.
• Zheng W.
• Nie X. 086-13468846103

Abstract

Background: Lignin is one of the main components of the cell wall and is directly associated with plant development and defence mechanisms in plants, especially in response to Fusarium graminearum (Fg) infection. Caffeoyl-coenzyme A O-methyltransferase (CCoAOMT) is the main regulator determining the efficiency of lignin synthesis and composition. Although it has been characterized in many plants, to date, the importance of the CCoAOMT family in wheat is not well understood. Results: Here, a total of 21 wheat CCoAOMT genes (TaCCoAOMT) were identified through an in silico genome search method and they were classified into four groups based on phylogenetic analysis, with the members of the same group sharing similar gene structures and conserved motif compositions. Furthermore, the expression patterns and co-expression network in which TaCCoAOMT is involved were comprehensively investigated using 48 RNA-seq samples from Fg infected and mock samples of 4 wheat genotypes. Combined with qRT-PCR validation of 11 Fg-responsive TaCCoAOMT genes, potential candidates involved in the FHB response and their regulation modules were preliminarily suggested. Additionally, we investigated the genetic diversity and main haplotypes of these CCoAOMT genes in bread wheat and its relative populations based on resequencing data. Conclusion: This study identified and characterized the CCoAOMT family in wheat, which not only provided potential targets for further functional analysis, but also contributed to uncovering the mechanism of lignin biosynthesis and its role in FHB tolerance in wheat and beyond.

Keywords

CCoAOMT gene family; Fusarium head blight (FHB); Expression pattern; Regulation module; Genetic variation; Wheat

External links

• DOI: 10.21203/rs.3.rs-215054/v1

About this resource

• Canonical resource URI: http://purl.org/phylo/treebase/phylows/study/TB2:S28407
• Other versions: Nexus NeXML
• Show BibTeX reference

  		@ARTICLE{TreeBASE2Ref32253,
  	 author = {Guang  Yang and Wenqiu  Pan and Ruoyu  Zhang and Yan  Pan and Qifan  Guo and Weijun  Zheng and Xiaojun  Nie},
  	 title = {Genome-wide identification and characterization of caffeoyl-coenzyme A O-methyltransferase genes related to the Fusarium head blight response in wheat},
  	 year = {2021},
  	 keywords = {CCoAOMT gene family; Fusarium head blight (FHB); Expression pattern; Regulation module; Genetic variation; Wheat},
  	 doi = {10.21203/rs.3.rs-215054/v1},
  	 url = {http://},
  	 pmid = {},
  	 journal = {BMC Genomics},
  	 volume = {22},
  	 number = {},
  	 pages = {504},
  	 abstract = {Background: Lignin is one of the main components of the cell wall and is directly associated with plant development and defence mechanisms in plants, especially in response to Fusarium graminearum (Fg) infection. Caffeoyl-coenzyme A O-methyltransferase (CCoAOMT) is the main regulator determining the efficiency of lignin synthesis and composition. Although it has been characterized in many plants, to date, the importance of the CCoAOMT family in wheat is not well understood.  
  Results: Here, a total of 21 wheat CCoAOMT genes (TaCCoAOMT) were identified through an in silico genome search method and they were classified into four groups based on phylogenetic analysis, with the members of the same group sharing similar gene structures and conserved motif compositions. Furthermore, the expression patterns and co-expression network in which TaCCoAOMT is involved were comprehensively investigated using 48 RNA-seq samples from Fg infected and mock samples of 4 wheat genotypes. Combined with qRT-PCR validation of 11 Fg-responsive TaCCoAOMT genes, potential candidates involved in the FHB response and their regulation modules were preliminarily suggested. Additionally, we investigated the genetic diversity and main haplotypes of these CCoAOMT genes in bread wheat and its relative populations based on resequencing data. 
  Conclusion: This study identified and characterized the CCoAOMT family in wheat, which not only provided potential targets for further functional analysis, but also contributed to uncovering the mechanism of lignin biosynthesis and its role in FHB tolerance in wheat and beyond.}
  }
  		

• Show RIS reference

  		TY  - JOUR
  ID  - 32253
  AU  - Yang,Guang 
  AU  - Pan,Wenqiu 
  AU  - Zhang,Ruoyu 
  AU  - Pan,Yan 
  AU  - Guo,Qifan 
  AU  - Zheng,Weijun 
  AU  - Nie,Xiaojun 
  T1  - Genome-wide identification and characterization of caffeoyl-coenzyme A O-methyltransferase genes related to the Fusarium head blight response in wheat
  PY  - 2021
  KW  - CCoAOMT gene family; Fusarium head blight (FHB); Expression pattern; Regulation module; Genetic variation; Wheat
  UR  - http://dx.doi.org/10.21203/rs.3.rs-215054/v1
  N2  - Background: Lignin is one of the main components of the cell wall and is directly associated with plant development and defence mechanisms in plants, especially in response to Fusarium graminearum (Fg) infection. Caffeoyl-coenzyme A O-methyltransferase (CCoAOMT) is the main regulator determining the efficiency of lignin synthesis and composition. Although it has been characterized in many plants, to date, the importance of the CCoAOMT family in wheat is not well understood.  
  Results: Here, a total of 21 wheat CCoAOMT genes (TaCCoAOMT) were identified through an in silico genome search method and they were classified into four groups based on phylogenetic analysis, with the members of the same group sharing similar gene structures and conserved motif compositions. Furthermore, the expression patterns and co-expression network in which TaCCoAOMT is involved were comprehensively investigated using 48 RNA-seq samples from Fg infected and mock samples of 4 wheat genotypes. Combined with qRT-PCR validation of 11 Fg-responsive TaCCoAOMT genes, potential candidates involved in the FHB response and their regulation modules were preliminarily suggested. Additionally, we investigated the genetic diversity and main haplotypes of these CCoAOMT genes in bread wheat and its relative populations based on resequencing data. 
  Conclusion: This study identified and characterized the CCoAOMT family in wheat, which not only provided potential targets for further functional analysis, but also contributed to uncovering the mechanism of lignin biosynthesis and its role in FHB tolerance in wheat and beyond.
  L3  - 10.21203/rs.3.rs-215054/v1
  JF  - BMC Genomics
  VL  - 22
  IS  - 
  ER  -