#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 26, 2024; 8:30 GMT TreeBASE (cc) 1994-2008 Study reference: Lutzoni F., & Vilgalys R. 1995. Integration of morphological and molecular data sets in estimating fungal phylogenies. Canadian Journal of Botany, 73: S649-S659. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S292] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=8; TAXLABELS Arrhenia_lobata Omphalina_epichysium Omphalina_ericetorum Omphalina_hudsoniana Omphalina_lutevitellina Omphalina_obscurata Omphalina_rivulicola Omphalina_velutina ; END; BEGIN TAXA; TITLE Taxa2; DIMENSIONS NTAX=8; TAXLABELS Arrhenia_lobata Omphalina_epichysium Omphalina_ericetorum Omphalina_hudsoniana Omphalina_lutevitellina Omphalina_obscurata Omphalina_rivulicola Omphalina_velutina ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1300] TITLE Fig._1; LINK TAXA = Taxa1; DIMENSIONS NCHAR=62; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 ] [ . . . . . . ] Arrhenia_lobata ATTT-CTGGAACCCGTCTCCATTGCTCTTAG--GTTCATC--GATTGTCGGGTTTCTTTGTT Omphalina_epichysium ATT--TCGAA?CTCGTCCCTGTTAT-GTTGG---TTC-TC-GGG-GGTC????????????? Omphalina_ericetorum ACT-CCCGTGAACCGTCGCCTTCACC-CCGG--GTTTATT--GGCTATTACCAGCTCTTGTC Omphalina_hudsoniana ATCT-CAAGAGTTGCTTTCTGCAGTC-TCGTTTGTCCTCTG-GGCAGCTACCTGCTCTTCTC Omphalina_lutevitellina GCCTCCAACAGTTGCTTTCCGCCACCCTTGTTTGTCCATTCGAGCGGTTACGAGCTCCCCCC Omphalina_obscurata GCTT-TTGAAACTCGCTTCCATCACTCTTAG--GTTCAAC--AATAGTCGGGTTTCCTTCTT Omphalina_rivulicola ACTT-CTGAAAATCGTTCTTGTTACC-CTGG---ATTTCT--GGCAATTACCTGCTTTTGTC Omphalina_velutina ATCTCCAACGGCTGCCCCTCGTGACC-CTGG--GAGCACTG-GGTGGCTACCTGCTCCCGCC ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2724] TITLE Table_2; LINK TAXA = Taxa2; DIMENSIONS NCHAR=17; FORMAT DATATYPE=Standard SYMBOLS= "0 1 2 3" MISSING=? GAP= -; CHARSTATELABELS 1 Lichenization / absent globular squamulose, 2 Clamps_at_base / absent present, 3 'Prop. basidia w/ diff. # spores' / 70%_tetrasporic 7.5%_trisporic 15%_bisporic 7.5%_unisporic, 4 Reproduction / potentially_parthenogenic sexual, 5 Pileus_surface / free_ends_not_forming_scales free_ends_forming_scales, 6 Cutis_texture / epidermoidea intricata porrecta prismatica, 7 'Cutis-free termiminal cell' / absent present, 8 'Pileus micro-incrustation' / absent present, 9 Pileus_laciniate_incrustation / absent present, 10 Axenic_culture_on_MEA / not_possible possible, 11 Pileus_colour / reddish_brown yellow grey_brown, 12 Lamellae_colour / pale_brown yellow dark_greyish_brown grey_white, 13 Stipe_base_pubescences / absent present, 14 Stipe_interior / hollow solid, 15 Stipe_colour / pale_reddish_brown white_to_pale_yellow dark_grey, 16 'Basidiospores w/ diff. # nuclei' / '13% uni 60% bi 13% tri 13% > tr' 100%_binucleate 100%_uninucleate, 17 Stipe / absent present, ; MATRIX [ 10 20 ] [ . . ] Arrhenia_lobata 0{01}311{12}011122???20 Omphalina_epichysium 01?1{01}21{01}0123??221 Omphalina_ericetorum 10000{12}0000121{01}101 Omphalina_hudsoniana 20100{01}1000111{01}121 Omphalina_lutevitellina 10100100001101111 Omphalina_obscurata 01311{12}11112201201 Omphalina_rivulicola 01310{123}011100{01}0021 Omphalina_velutina 1020{01}10{01}0002110?1 ; END; BEGIN TREES; TITLE Tb5038; LINK TAXA = Taxa1; TRANSLATE 1 Omphalina_epichysium, 2 Omphalina_ericetorum, 3 Omphalina_hudsoniana, 4 Omphalina_lutevitellina, 5 Omphalina_obscurata, 6 Omphalina_rivulicola, 7 Omphalina_velutina, 8 Arrhenia_lobata; TREE Fig._3 = [&R] ((((4,3),7),(1,(5,8))),2,6); END; BEGIN TREES; TITLE Tb5035; LINK TAXA = Taxa2; TRANSLATE 1 Arrhenia_lobata, 2 Omphalina_epichysium, 3 Omphalina_ericetorum, 4 Omphalina_hudsoniana, 5 Omphalina_lutevitellina, 6 Omphalina_obscurata, 7 Omphalina_rivulicola, 8 Omphalina_velutina; TREE Fig._2A = [&R] ((((5,4),3),8),7,(1,(2,6))); END; BEGIN TREES; TITLE Tb5037; LINK TAXA = Taxa1; TRANSLATE 1 Omphalina_epichysium, 2 Omphalina_ericetorum, 3 Omphalina_hudsoniana, 4 Omphalina_lutevitellina, 5 Omphalina_obscurata, 6 Omphalina_rivulicola, 7 Omphalina_velutina, 8 Arrhenia_lobata; TREE Fig._2B = [&R] ((((4,3),7),(1,(5,8))),2,6); END; BEGIN TREES; TITLE Tb5036; LINK TAXA = Taxa2; TRANSLATE 1 Arrhenia_lobata, 2 Omphalina_epichysium, 3 Omphalina_ericetorum, 4 Omphalina_hudsoniana, 5 Omphalina_lutevitellina, 6 Omphalina_obscurata, 7 Omphalina_rivulicola, 8 Omphalina_velutina; TREE Fig._7 = [&R] ((((5,4),8),3),7,(2,(1,6))); TREE Fig._6.2 = [&R] ((((5,4),8),3),7,(2,(1,6))); TREE Fig._6.3 = [&R] (3,7,(((5,4),8),(2,(1,6)))); TREE Fig._6.1 = [&R] (((((5,4),8),3),2),7,(1,6)); END;