#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on April 19, 2024; 19:32 GMT

TreeBASE (cc) 1994-2008

Study reference:
Tehler A. 1988. A cladistic outline of the Eumycota. Cladistics, 4: 227-277.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S301]

BEGIN TAXA;
        TITLE  Taxa1;
        DIMENSIONS NTAX=22;
        TAXLABELS
            Auriculariaceae
            Blastocladiales
            Chytridiales
            Dacrymycetaceae
            Dipodascaceae
            Dipodascopsis
            Endomycetaceae
            Euascomycetes
            Eurotiales
            Exobasidiales
            Homobasidiomycetes
            Hyphochytriomycetes
            Myxotrichum
            Oomycetes
            Saccharomycetaceae
            Taphrinaceae
            Tilletiaceae
            Tremellaceae
            Tulasnellaceae
            Uredinales
            Ustilaginaceae
            Zygomycetes
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1562]

	TITLE Table_1;
	LINK TAXA = Taxa1;
	DIMENSIONS NCHAR=51;
	FORMAT DATATYPE=Standard SYMBOLS= "0 1 2 3 4 5 6 7 8 9" MISSING=? GAP= -;
	CHARSTATELABELS
		1  'hyphae--uninuclear phase' / 0 1,
		2  lifetime_of_monokaryon / 0 'long-lived' 'short-lived',
		3  loss_of_hyphal_monokaryon / 0 1,
		4  dikaryon / 0 1,
		5  clamp_connections / 0 1,
		6  croziers / 0 1,
		7  adventitious_septa / 0 1,
		8  primary_septa_type / 0 aporate simple_pores dolipore,
		9  ascocarp / 0 1,
		10  basidiocarp / 0 1,
		11  cystidia / 0 1,
		12  basidiohymenium / 0 1,
		13  ascohymenium / 0 1,
		14  probasidium / 0 1,
		15  metabasidium_type / 0 transversely_septate_phragmobas longitudinally_septate_phragmob holobasidia,
		16  'basidio-sterigmata' / 0 1,
		17  'meiosporangium w/apical pore' / 0 1,
		18  meiospore_production_type / 0 spore_vesicle ascus_vesicle,
		19  basidiospore_type / 0 nonrepetitive repetitive,
		20  gametes_naked / 0 1,
		21  'meio-blastopores' / 0 1,
		22  loss_of_tinsel_flargellum / 0 1,
		23  motile_cells_absent / 0 1,
		24  gametangiogamy_type / 0 isogametangiogamy anisogametangiogamy somatogamy,
		25  sexual_compatibility / 0 bipolar tetrapolar,
		26  diploid_phase / 0 1,
		27  chitin_cell_walls / 0 1,
		28  'NADP-linked glutamatic dehydrog' / 0 1,
		29  AAA_lysine_pathway / 0 1,
		30  'type I NAD-linked glut. dehydro' / 0 1,
		31  no_glucose_repression_of_glutam / 0 1,
		32  class_II_lactic_dehydrogenase / 0 1,
		33  'NADP-linked isocitric dehydroge' / 0 1,
		34  'NAD-linked isocitric dehydrogen' / 0 1,
		35  'melanin from 1,8-dihydroxynapht' / 0 1,
		36  faint_Feulgen_staining / 0 1,
		37  loss_of_cellulose_cell_wall / 0 1,
		38  'loss of a-linolenic acid synth' / 0 1,
		39  25S_RNA_molec._wt. / 0 1,
		40  parenthosome_type / 0 'non- and pauciperforate' multiperforate,
		41  woronin_bodies / 0 1,
		42  cell_wall_structure / 0 two_layered multilamellar,
		43  chytridiomycete_flagellar_appar / 0 1,
		44  spindle_pole_bodies_at_mitosis / 0 1,
		45  nucleolus_disappears_at_mitosis / 0 1,
		46  double_parallel_chromosome_alig / 0 1,
		47  nuclear_membrane_broken_at_mito / 0 1,
		48  'mitochondria w/flattened crista' / 0 1,
		49  terrestrial_habitat / 0 1,
		50  dikaryon_nutrition / 0 parasitic independent,
		51  dimorphic_mycelium / 0 1,
		;

MATRIX
[                               10        20        30        40        50 ]
[                                .         .         .         .         . ]
Auriculariaceae         110110130101011101211113201119999901111202011111120
Blastocladiales         000000000000000000000100901010111190101009100001000
Chytridiales            000000000000000000010101901011111190101009100001000
Dacrymycetaceae         110110130101013101111113201119999901111202011111120
Dipodascaceae           000000110000000001010111101119999991111001011101101
Dipodascopsis           110000120000000001010111101119999991111001011101101
Endomycetaceae          100000110000000001010111101119999991111001011101101
Euascomycetes           110101121000100012010112101119999911111011011101110
Eurotiales              110101121000000002010112101119999901111011011101111
Exobasidiales           110100120000013101111113901119999901111002011111120
Homobasidiomycetes      120110130111003101110113201119999901111102011111120
Hyphochytriomycetes     000000000000000000000000901000000099001009001000000
Myxotrichum             110101121000000002010111101119999991111011011101111
Oomycetes               000000000000000000000000900000000099000009000000000
Saccharomycetaceae      111100120000090001011113111119999901111001011101120
Taphrinaceae            111100190000010001011113111119999901111001011101120
Tilletiaceae            120110130000013101111113101119999901111102011111120
Tremellaceae            110110130111012101211113201119999901111202011111120
Tulasnellaceae          110110130111013101211113201119999901111202011111120
Uredinales              110100120000011101910113101119999901111002011111120
Ustilaginaceae          110110120000011001011113101119999901111002011111120
Zygomycetes             000000100000000000010111901011111191101009010001101
;
END;

BEGIN TREES;
      TITLE Tb5052;
      LINK TAXA = Taxa1;
         TRANSLATE
            1    Oomycetes,
            2    Hyphochytriomycetes,
            3    Blastocladiales,
            4    Chytridiales,
            5    Zygomycetes,
            6    Dipodascaceae,
            7    Endomycetaceae,
            8    Dipodascopsis,
            9    Myxotrichum,
            10   Eurotiales,
            11   Euascomycetes,
            12   Saccharomycetaceae,
            13   Taphrinaceae,
            14   Ustilaginaceae,
            15   Uredinales,
            16   Exobasidiales,
            17   Tilletiaceae,
            18   Homobasidiomycetes,
            19   Dacrymycetaceae,
            20   Auriculariaceae,
            21   Tremellaceae,
            22   Tulasnellaceae;
      TREE Fig._1 = [&R] (1,(2,(3,(4,(5,(6,(7,(8,(((11,10),9)Ascomycetes,((13,12)Protobasidiomycetes,(14,(15,(16,(17,(18,(19,(20,(21,22))))))))Basidiomycetes))))))Amastigomycota)))Eumycota);



END;