#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on March 28, 2024; 10:41 GMT TreeBASE (cc) 1994-2008 Study reference: Sytsma K., & Smith J. 1988. DNA and morphology: comparisons in the Onagraceae. Annals of the Missouri Botanical Garden, 75: 1217-1237. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S310] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=10; TAXLABELS Clarkia_amoena Clarkia_biloba Clarkia_cylindrica Clarkia_dudleyana Clarkia_epilobioides Clarkia_lewisii Clarkia_lingulata Clarkia_modesta Clarkia_rostrata Heterogaura_heterandra ; END; BEGIN TAXA; TITLE Taxa2; DIMENSIONS NTAX=15; TAXLABELS Clarkia Fuchsia_arborescens Fuchsia_boliviana Fuchsia_excorticata Fuchsia_jimenezii Fuchsia_lycioides Fuchsia_magellanica Fuchsia_nigricans Fuchsia_pachyrrhiza Fuchsia_paniculata Fuchsia_regia Fuchsia_splendens Fuchsia_thymifolia Fuchsia_tillettiana Fuchsia_verrucosa ; END; BEGIN TAXA; TITLE Taxa3; DIMENSIONS NTAX=14; TAXLABELS Clarkia_amoena Clarkia_biloba Clarkia_bottae Clarkia_brewerii Clarkia_concinna Clarkia_imbricata Clarkia_lassenensis Clarkia_mildrediae Clarkia_rostrata Clarkia_unguiculata Clarkia_virgata Clarkia_williamsonii Clarkia_xantiana Epilobium_brachycarpum ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1058] TITLE Table_2; LINK TAXA = Taxa3; DIMENSIONS NCHAR=23; FORMAT DATATYPE=Standard SYMBOLS= "0 1" MISSING=? GAP= -; MATRIX [ 10 20 ] [ . . ] Clarkia_amoena 00110001000000000000000 Clarkia_biloba 00111001000010000000000 Clarkia_bottae 00010001001011000100000 Clarkia_brewerii 01100001011011110010000 Clarkia_concinna 01100000011010010010000 Clarkia_imbricata 00100001000010011001111 Clarkia_lassenensis 00110001000000000000000 Clarkia_mildrediae 00110110100110000000000 Clarkia_rostrata 00111001000010000000000 Clarkia_unguiculata 00111001000010000000000 Clarkia_virgata 00110111100110000000000 Clarkia_williamsonii 00100001000010011001111 Clarkia_xantiana 10110001000011100100000 Epilobium_brachycarpum 11111001000010000001110 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1047] TITLE Table_1; LINK TAXA = Taxa1; DIMENSIONS NCHAR=55; FORMAT DATATYPE=Standard SYMBOLS= "0 1" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 ] [ . . . . . ] Clarkia_amoena 1100010110110100010110001001101000100011000100101100100 Clarkia_biloba 1001111010110100110110001011010100101111010101111111001 Clarkia_cylindrica 0110010100101011011110011000101011100011100000100100110 Clarkia_dudleyana 1100000110100100010111001001101100000010010100001111101 Clarkia_epilobioides 0100010111000000000000100101111000110001001110101000110 Clarkia_lewisii 0110010100111011001110011000101011100011100000100100110 Clarkia_lingulata 1001111010110100110110001011000100101111010101111111001 Clarkia_modesta 1000010010110100010111001001101100100011000100101111101 Clarkia_rostrata 0100010111000000000000100101111000110001001110101000110 Heterogaura_heterandra 1100000110110100010111001001101100000010000100001111101 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1069] TITLE Table_3; LINK TAXA = Taxa2; DIMENSIONS NCHAR=46; FORMAT DATATYPE=Standard SYMBOLS= "0 1" MISSING=? GAP= -; MATRIX [ 10 20 30 40 ] [ . . . . ] Clarkia 0010001000000101100000101000110000000110011010 Fuchsia_arborescens 0010000000000001100000001000110001000110010010 Fuchsia_boliviana 0010001100000001100000001010110000000110010010 Fuchsia_excorticata 1110001010000101000000110000110000000110011010 Fuchsia_jimenezii 0011101000100111110111101001111100011100101001 Fuchsia_lycioides 0010001000011001100000001100010010010110010010 Fuchsia_magellanica 0010001000001001101000001100010000010110010000 Fuchsia_nigricans 0010001000000000100000001000110000100110010110 Fuchsia_pachyrrhiza 0010001000000001100000001000110000000110010010 Fuchsia_paniculata 0010001000000001100000001000110001000110010010 Fuchsia_regia 0010001000001001100000001100010000010110010010 Fuchsia_splendens 0010001001000001100000001000110000000110010010 Fuchsia_thymifolia 0000011000000001100000001000100000000010010010 Fuchsia_tillettiana 0010001000000000100000001000110000010111010010 Fuchsia_verrucosa 0010001000000001100000001000110000000110010010 ; END; BEGIN TREES; TITLE Tb5068; LINK TAXA = Taxa2; TRANSLATE 1 Clarkia, 2 Fuchsia_splendens, 3 Fuchsia_thymifolia, 4 Fuchsia_boliviana, 5 Fuchsia_nigricans, 6 Fuchsia_verrucosa, 7 Fuchsia_tillettiana, 8 Fuchsia_jimenezii, 9 Fuchsia_lycioides, 10 Fuchsia_magellanica, 11 Fuchsia_regia, 12 Fuchsia_arborescens, 13 Fuchsia_paniculata, 14 Fuchsia_excorticata, 15 Fuchsia_pachyrrhiza; TREE Fig._10 = [&R] (((((2,4,5,6,3,15,(12,13)),7,(9,10,11)),8),14)Fuchsia,1); END; BEGIN TREES; TITLE Tb5067; LINK TAXA = Taxa3; TRANSLATE 1 Epilobium_brachycarpum, 2 Clarkia_biloba, 3 Clarkia_rostrata, 4 Clarkia_xantiana, 5 Clarkia_unguiculata, 6 Clarkia_bottae, 7 Clarkia_concinna, 8 Clarkia_brewerii, 9 Clarkia_imbricata, 10 Clarkia_williamsonii, 11 Clarkia_amoena, 12 Clarkia_lassenensis, 13 Clarkia_virgata, 14 Clarkia_mildrediae; TREE Fig._8A = [&R] ((((3,2),5,4,6,(7,8),(11,12),(13,14)),(9,10))Clarkia,1); TREE Fig._8B = [&R] ((((3,2),5),(4,6),(11,12),(13,14)),((7,8),(9,10)))Clarkia; END; BEGIN TREES; TITLE Tb5066; LINK TAXA = Taxa1; TRANSLATE 1 Clarkia_amoena, 2 Clarkia_epilobioides, 3 Clarkia_rostrata, 4 Clarkia_lewisii, 5 Clarkia_cylindrica, 6 Clarkia_dudleyana, 7 Heterogaura_heterandra, 8 Clarkia_modesta, 9 Clarkia_lingulata, 10 Clarkia_biloba; TREE Fig._3 = [&R] (((2,3),(4,5)),((6,7),(8,(9,10))))Clarkia; END;