#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on March 29, 2024; 11:56 GMT TreeBASE (cc) 1994-2008 Study reference: Cracraft J. 1986. Origin and evolution of continental biotas: Speciation and historical congruence within the Australian avifauna. Evolution, 40: 977-996. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S312] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=6; TAXLABELS Malurus_amabilis Malurus_dulcis Malurus_elegans Malurus_lamberti Malurus_rogersi Malurus_splendens ; END; BEGIN TAXA; TITLE Taxa2; DIMENSIONS NTAX=5; TAXLABELS Eopsaltria_flaviventris Tregellasia_albigularis Tregellasia_capito Tregellasia_leucops Tregellasia_nana ; END; BEGIN TAXA; TITLE Taxa3; DIMENSIONS NTAX=5; TAXLABELS Amytornis Stipiturus_malachurus Stipiturus_mallee Stipiturus_ruficeps Stipiturus_westernensis ; END; BEGIN TAXA; TITLE Taxa4; DIMENSIONS NTAX=9; TAXLABELS Poephila_acuticauda Poephila_annulosa Poephila_atropygialis Poephila_bichenovii Poephila_cincta Poephila_guttata Poephila_hecki Poephila_leucotis Poephila_personata ; END; BEGIN TAXA; TITLE Taxa5; DIMENSIONS NTAX=9; TAXLABELS Ocyphaps_lophotes Petrophasa_albipennis Petrophasa_blaauwi Petrophasa_ferruginea Petrophasa_peninsulae Petrophasa_plumifera Petrophasa_rufipennis Petrophasa_scripta Petrophasa_smithii ; END; BEGIN TAXA; TITLE Taxa6; DIMENSIONS NTAX=7; TAXLABELS Lophorina_superba Parotia_sefilata Ptiloris_alberti Ptiloris_intercedens Ptiloris_magnificus Ptiloris_paradiseus Ptiloris_victoriae ; END; BEGIN TAXA; TITLE Taxa7; DIMENSIONS NTAX=8; TAXLABELS Cinclosoma Orthonyx Psophodes_cristatus Psophodes_lateralis Psophodes_leucogaster Psophodes_nigrogularis Psophodes_occidentalis Psophodes_olivaceus ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1103] TITLE Table_1; LINK TAXA = Taxa4; DIMENSIONS NCHAR=21; FORMAT DATATYPE=Standard SYMBOLS= "0 1 2 3" MISSING=? GAP= -; CHARSTATELABELS 1 back_color / light_dirty_gray_brown dark_pinkish_grey dark_pinkish_brown, 2 back_barred / no very_faint_barring, 3 black_band_on_flank / no narrow large, 4 color_of_breast / white_or_light_grey beige pinkish_buff dark_brownish_beige, 5 bamng_on_breast / barred_strongly faintly_barred no_barring, 6 bill_color / blue '-' gray red_or_orange, 7 black_on_face / no thin_malar_stripe in_front_of_eye_only extensive._meets_over_bill, 8 throat / white_or_light_grey black_chin_only black_chin_and_throat, 9 crown / diny_grey_or_brown light_grey reddish '-', 10 forehead / black no_black, 11 tail_shape / short_not_sharply_pointed short_sharply_pointed very_long_sharply_pointed, 12 lower_back_and_rump / white_or_diny_grey_brown black, 13 upper_tail_covens / black_sometimes_with_spots white, 14 face / white beige, 15 under_tail_covens / white black, 16 primaries / leading_edge_brown leading_edge_chestnut, 17 secondanes_and_secondary_wing_c / not_spotted spotted, 18 flanks / same_color_as_belly different_color, 19 black_band_or_spots_between_thr / absent present, 20 black_band_or_spots_between_bre / present absent, 21 sexual_dimorphism / minor well_marked, ; MATRIX [ 10 20 ] [ . . ] Poephila_acuticauda 011221222121100000010 Poephila_annulosa 000020000001001010100 Poephila_atropygialis 111323222101000000010 Poephila_bichenovii 000020000000001010100 Poephila_cincta 111323222101100000010 Poephila_guttata 010001100100000001001 Poephila_hecki 011222222121100000010 Poephila_leucotis 212112311010100100010 Poephila_personata 212112311010110100010 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1140] TITLE Table_5; LINK TAXA = Taxa2; DIMENSIONS NCHAR=8; FORMAT DATATYPE=Standard SYMBOLS= "0 1 2 3" MISSING=? GAP= -; CHARSTATELABELS 1 throat / greyish_white_to_white grey white_anteriorly_yellow_posteno, 2 breast / grey lemon_yellow bright_yellow_some_olive, 3 belly_and_flanks / yellow bnght_yellow, 4 crown / dark_olive_green brown black, 5 lores_and_front_of_eye / dark_olive_green white light_brownish, 6 back / dark_olive_green light_olive_green, 7 ear_patch / dark_grey_olive_green grey grey_brown black, 8 tail / brown_essentially_no_tip_color brown_narrowly_tipped_white, ; MATRIX Eopsaltria_flaviventris 00000000 Tregellasia_albigularis 02121131 Tregellasia_capito 11011121 Tregellasia_leucops 23121111 Tregellasia_nana 11012121 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1132] TITLE Table_4; LINK TAXA = Taxa6; DIMENSIONS NCHAR=16; FORMAT DATATYPE=Standard SYMBOLS= "0 1 2 3" MISSING=? GAP= -; CHARSTATELABELS 1 upper_throat_male / velvety_black metallic_purple_blue_green, 2 upper_throat_female / very_light_brown_finely_vermicu buff_or_brownish_white, 3 lower_throat_male / velvety_black metallic_purple_green metallic_purple_blue_green, 4 lower_throat_female / very_light_brown_finely_vermicu buffy_no_vermiculation, 5 breast_male / metallic_purple_green metallic_purple_blue_green_with velvety_black, 6 breast_and_belly_female / very_light_brown_finely_vermicu dirty_white_with_fine_vermicula buff_with_V_shaped_brown_markin orange_buffwith_dark_brown_spot, 7 belly_male / black black_with_purplish_tint very_dark_purplish_green dark_velvety_bluish_green_with, 8 crown_male / metallic_purple_green_forehead metallic_purple_green_also_on_f metallic_blue_green_also_on_for, 9 crown_female / very_dark_brown_with_faint_fine brown_with_fine_buff_streaks rufous_with_fine_buff_streaks, 10 back_male / velvety_black velvety_black_flecks_of_purple, 11 back_and_upper_tail_covens_fema / dark_red_brown rufous dull_brown, 12 upper_tail_coverts_male / black metallic_purple_green metallic_purple_blue_green, 13 nostils / incompletely_feathered feathered, 14 body_size / large small, 15 bill_lower_mandible / curved straight, 16 bill_size / very_short short elongated, ; MATRIX Lophorina_superba 0000000000000100 Parotia_sefilata 0010001000000000 Ptiloris_alberti 1120102211121110 Ptiloris_intercedens 1020112221121111 Ptiloris_magnificus 1020112221120020 Ptiloris_paradiseus 0111223110211021 Ptiloris_victoriae 0111233110211111 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1114] TITLE Table_2; LINK TAXA = Taxa5; DIMENSIONS NCHAR=17; FORMAT DATATYPE=Standard SYMBOLS= "0 1 2 3 4" MISSING=? GAP= -; CHARSTATELABELS 1 throat_color / light_blue_gray white spotted, 2 ventral_border_of_throat / none faint_black well_marked_black_border very_broad_black_border, 3 breast / blue_gray brown_suffused_with_blue_gray brown_tipped_buff dark_brown, 4 belly / blue_gray buff very_dark_brown rufous, 5 flanks / blue_gray white_patches very_dark_brown rufous., 6 breast_spot / none light_blue_grey_with_dark_termi, 7 under_tail_coverts / blue_gray brown_tipped_white brown_tipped_buff dark_brown_essentially_no_tip, 8 crown_color / dark_blue_gray brown dark_brown_spotted, 9 crown_crest / present_black present_rufous absent_dark_brown absent_brown, 10 back_and_rump / greenish_dark_grey brown dark_brown_vermiculated rusty, 11 secondaries_and_secondary_cover / grey_barred_strongly_with_brown brown_faint_buff_bamng brown_wide_buff_terminal_band dark_brown_very_faint_tip rusty_brown, 12 speculum_secondanes / indescent_purple indescent_purple_green indescence_absent, 13 speculum_secondary_coverts / iridescent_green iridescent_purple_green very_slight_indescence indescence_abesnt, 14 superciliary_line / faint_dark_essentially_absent narrow_black wide_black black_and_white, 15 suborbital_stnpe / faint_dark_essentially_absent narrow_black wide_black black_and_white, 16 malar_stripe / none wide_black_with_white_above, 17 wing_patch / none_wing_brown rufous_patch white_patch, ; MATRIX Ocyphaps_lophotes 00000000000000000 Petrophasa_albipennis 20322032223220102 Petrophasa_blaauwi 11111121311113300 Petrophasa_ferruginea 13433010134131101 Petrophasa_peninsulae 12201021312112210 Petrophasa_plumifera 13443010134131101 Petrophasa_rufipennis 20322032223220101 Petrophasa_scripta 12201021312112210 Petrophasa_smithii 11111121311113300 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1162] TITLE Table_7; LINK TAXA = Taxa3; DIMENSIONS NCHAR=8; FORMAT DATATYPE=Standard SYMBOLS= "0 1 2" MISSING=? GAP= -; CHARSTATELABELS 1 throat_male / brown_and_white_streaked light_biue_grey light_blue_grey_flecked_with_da, 2 breast_male / brown_and_white_streaked light_blue__gray light_blue_grey_flecked_with_da, 3 throat_and_breast_female / brown_and_white_streaked light_buff dark_buff, 4 flanks / light_buff dark_buff, 5 crown / brown_streaked brown_heavily_streaked dull_rufous_no_streaking, 6 back / brown_lightly_streaked brown_heavily_streaked, 7 face / no_blue_streaked little_blue_light_streaking bright_blue_no_streaking, 8 tail / normal_not_filamentous filamentous, ; MATRIX Amytornis 00000000 Stipiturus_malachurus 11211111 Stipiturus_mallee 12102021 Stipiturus_ruficeps 22102021 Stipiturus_westernensis 11211111 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1124] TITLE Table_3; LINK TAXA = Taxa1; DIMENSIONS NCHAR=11; FORMAT DATATYPE=Standard SYMBOLS= "0 1 2 3" MISSING=? GAP= -; CHARSTATELABELS 1 throat_male / smalt_blue blue_black black, 2 belly_male / smalt_blue grayish_white white white_with_lavender_spot_on_fla, 3 scapulars_male / blue chestnut chestnut_with_purplish_blue_fea, 4 ear_tufts_male / sky_blue venetian_blue_with_turquoise_ca venetian_blue_without_turquoise, 5 upper_tail_coverts_male / cobalt_blue dark, 6 crown_male / cobalt_blue turquoise_blue true_blue_azure light_smalt_blue_deep_azure, 7 back_male / deep_blue_no_violaceous_tint flaxflower_blue_to_dull_violace campanula, 8 rump_male / cobalt_blue black, 9 upper_parts_female / brown dark_grayish_blue light_blue, 10 lores_female / light_rufous chestnut white, 11 tail_female / greyish_turquoise blue_gray dark_greyish_blue bright_blue, ; MATRIX Malurus_amabilis 22121011122 Malurus_dulcis 23221321223 Malurus_elegans 11111101010 Malurus_lamberti 21111201011 Malurus_rogersi 23221321213 Malurus_splendens 00000000000 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1151] TITLE Table_6; LINK TAXA = Taxa7; DIMENSIONS NCHAR=14; FORMAT DATATYPE=Standard SYMBOLS= "0 1 2 3 4" MISSING=? GAP= -; CHARSTATELABELS 1 throat / white greyish black, 2 breast / white greyish_brown light_greyish_brown greyish_olive black, 3 belly / whitish_grey white pale_greyish_olive dark_greyish_mottled_black_and, 4 flanks / light_greyish_brown rufous greyish_olive dark_olive_green dark_brown_olive_green, 5 under_tail_covens / rufous_grey brown_with_white_tips greyish_olive dark_olive_green dark_olivebrown, 6 crown / dark_brown brown dark_olive_green black, 7 back_and_rump / dark_nch_brown brown dark_olive_green dark_olive_brown, 8 face_and_ear_covens / light_brown grey_to_black olive_green, 9 malar / absent broad_white_patch narrow_white_stripe_with_black narrow_white_stnpe_without_blac, 10 bill / short elongate, 11 tail / shoe_not_strongly_graduated long_strongly_graduated, 12 crest / lacking present, 13 voice / not_loud_explosive loud_explosive, 14 streaking_on_belly_and_flanks / absent present, ; MATRIX Cinclosoma 21110001110001 Orthonyx 00110001010010 Psophodes_cristatus 12001110001111 Psophodes_lateralis 24333331121110 Psophodes_leucogaster 23122222321110 Psophodes_nigrogularis 23222222221110 Psophodes_occidentalis 12001110001110 Psophodes_olivaceus 24344331121110 ; END; BEGIN TREES; TITLE Tb5076; LINK TAXA = Taxa7; TRANSLATE 1 Orthonyx, 2 Cinclosoma, 3 Psophodes_lateralis, 4 Psophodes_olivaceus, 5 Psophodes_nigrogularis, 6 Psophodes_leucogaster, 7 Psophodes_cristatus, 8 Psophodes_occidentalis; TREE Fig._6 = [&R] ((((4,3),(5,6)),(7,8))Psophodes,(1,2)); END; BEGIN TREES; TITLE Tb5072; LINK TAXA = Taxa5; TRANSLATE 1 Ocyphaps_lophotes, 2 Petrophasa_blaauwi, 3 Petrophasa_smithii, 4 Petrophasa_peninsulae, 5 Petrophasa_scripta, 6 Petrophasa_rufipennis, 7 Petrophasa_albipennis, 8 Petrophasa_ferruginea, 9 Petrophasa_plumifera; TREE Fig._2 = [&R] ((((2,3),(5,4)),((6,7),(8,9)))Petrophasa,1); END; BEGIN TREES; TITLE Tb5077; LINK TAXA = Taxa3; TRANSLATE 1 Amytornis, 2 Stipiturus_malachurus, 3 Stipiturus_westernensis, 4 Stipiturus_ruficeps, 5 Stipiturus_mallee; TREE Fig._7 = [&R] (((2,3),(4,5))Stipiturus,1); END; BEGIN TREES; TITLE Tb5071; LINK TAXA = Taxa4; TRANSLATE 1 Poephila_bichenovii, 2 Poephila_annulosa, 3 Poephila_guttata, 4 Poephila_personata, 5 Poephila_leucotis, 6 Poephila_hecki, 7 Poephila_acuticauda, 8 Poephila_atropygialis, 9 Poephila_cincta; TREE Fig._1 = [&R] ((((4,5),((6,7),(8,9))),3),(1,2))Poephila; END; BEGIN TREES; TITLE Tb5074; LINK TAXA = Taxa6; TRANSLATE 1 Lophorina_superba, 2 Parotia_sefilata, 3 Ptiloris_victoriae, 4 Ptiloris_paradiseus, 5 Ptiloris_magnificus, 6 Ptiloris_intercedens, 7 Ptiloris_alberti; TREE Fig._4 = [&R] (((3,4),(7,(6,5)))Ptiloris,(2,1)); END; BEGIN TREES; TITLE Tb5075; LINK TAXA = Taxa2; TRANSLATE 1 Eopsaltria_flaviventris, 2 Tregellasia_nana, 3 Tregellasia_capito, 4 Tregellasia_albigularis, 5 Tregellasia_leucops; TREE Fig._5 = [&R] (((2,3),(4,5))Tregellasia,1); END; BEGIN TREES; TITLE Tb5073; LINK TAXA = Taxa1; TRANSLATE 1 Malurus_splendens, 2 Malurus_lamberti, 3 Malurus_elegans, 4 Malurus_rogersi, 5 Malurus_dulcis, 6 Malurus_amabilis; TREE Fig._3 = [&R] (((((5,4),6),2),3),1)Malurus; END;