#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on April 25, 2024; 11:41 GMT

TreeBASE (cc) 1994-2008

Study reference:
Cullings K., & Bruns T. 1992. Phylogenetic origin of the Monotropoideae inferred
from partial 28S ribsomal RNA gene sequences. Canadian Journal of Botany, 70: 1703-1708.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S314]

BEGIN TAXA;
        TITLE  Taxa1;
        DIMENSIONS NTAX=12;
        TAXLABELS
            Arctostaphylos_glandulosa
            Arctostaphylos_pungens
            Arctostaphylos_sp.
            Ledum_glandulosum
            Monotropa_hypopithys
            Pleuricospora_fimbriolata
            Pterospora_andromedea
            Pyrola_picta
            Rhododendron
            Sarcodes_sanguinea
            Vaccinium_ovatum
            Vaccinium_scoparium
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1184]

	TITLE Fig._1;
	LINK TAXA = Taxa1;
	DIMENSIONS NCHAR=358;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                     10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350        ]
[                                      .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .        ]
Arctostaphylos_glandulosa     GGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCGAATGGGGGCCGGCGATGCGCGTCGGTCGGATGTGGAACGG-TTAA-CGCCGGTCCGCCAATCGACTCGGGGCGTGGATCGGTGCGGATTGGGACGGAGGCCAAAGCCCAGGAAGTCGTTAA?GCCTGCGGAGACGCCTTCGCCCCGATCGTGGCTGGCAGCGCGCGCCATTTC-GGCGTGCTTCGGCATCTGCGCGCTCCCGGCACCGGCCAGTGGGCTCTCCATTCGGCCCGTCTTGAAACACGGACCAAGGAGTCTGAC
Arctostaphylos_pungens        GGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCGAATGGGGGCCGGCGATGCGCGTCGGTCGGATGTGGAACGG-TTAA-CGCCGGTCCGCCAATCGACTCGGGG?GTGGATCGGTGCGGATTGGGACGGAGGCCAAAGCCCAGGAAGTCGTTAA?GCCTG?GGAGACGCCTTCGCCCCGATCGTGGCTGGCAGCGCGCGCC?TTTC-GGCGTGCTTCGGCATCTGCGCGCTCCCGGCACCGGCCAGTGGGCTCTCCATTCGGCCCGTCTTGAAACACGGACCAAGGAGTCTGAC
Arctostaphylos_sp.            GGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCGAATGGGGGCCGGCGATGCGCGTCGGTCGGATGTGGAACGG-TTAA-CGCCGGTCCGCCAATCGACTCGGGGTGTGGATCGGTGCGGATTGGGACGGAGGCCAAAGCCCAGGAAGTCGTTAA?GCCTGAGGAGACGCCTTCGCCCCGATCGTGGCTGGCAGCGCGCGCCTTTTC-GGCGTGCTTCGGCATCTGCGCGCTCCCGGCACCGGCCAGTGGGCTCTC?ATTCGGCCCGTCTTGAAACACGGACCAAGGAGTCTGAC
Ledum_glandulosum             GGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCGAATGGGGGCCGGCGATGCGCCCCGGTCGGATGTGGAACGGGCTAA-ACCCGGTCCGCCAATCGACTCGGGGTGTGGACCGGTGCGGATTGGGACGGAGGCCAAAGCCCAGGATGTCGTTAA?GCCTGTGGAGACGCCTTCGCCTCGATCGTGGCTGGCAGCGTGCGCCTTT---GGC?TGCTTCGGCATCTGCGCGCTCCCGGCACCGGCCAGTGGGCTCTCCATTCGGCCCGTCTTGAAACACGGACCAAGGAGTCTGAC
Monotropa_hypopithys          GGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGAAAGATGAAAAGG?CTTTGAAAAGAGAGTCAAAAAGTGCTTGAAATTGTCGGGAGGGAAGCGAATGGGGGTCGGCGATGTGCCTCGGTCGGATGTGGAACGG-TTAT-AGCCGGTTTGCCAATTGACTCGGGGTGTGGATCGGTGCGGATTGGGACGGAGGCCAAAGCCCAGGAAGTCGTTAA?ACCTGTGGAGACGCCTTCGCCCCAATTGTGGCTGGCAGCGTGCGTCTTTAT-GGCGTGCTTCGGCATCTGCGCGCTGCCGGCACCGATCAGTGGGCTCTCCATTCGTCCCGTCTTGAAACACGGACCAAGGAGTCTGAC
Pleuricospora_fimbriolata     GGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGAAAGATGAAAAGG?CTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTTGGGAGGGAAGCGAATGGGGGTCGGCGATGCTCCCCGGTTGGATGTGGAACGG-TTTT-AGCCGGTCTGCCAATCGACTTGGGGTGTGGATCGGTGCGGATTGGGACGGAGGCCAAAGCCCAGGAAGTCGTTAAAGCCTGTGGATACGCCTTCGCCTTGATTGTGGTTGGCAGCACGCACCTTTTTTGGTGTGCCTATGCATCTGTGCGCTCCCGGCACTGCCCAGTGGGCTCCCCATTCGGCCCGTCTTGAAACACGGACCAAGGAGTCTGAC
Pterospora_andromedea         GGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGAAAGATGAAAAGG?CTTTGAAAAGAGAGTCAAAAAGTGCTTGAAATTGTCGGGAGGGAAGCGAATGGGGGTCGGCGATGTGCCTCGGTCGGATGTGGAACGG-TTAT-AGCCGGTCTGCCAATTGACTCGGGGTGTGGATCGGTGCGGATTGGGACGGAGGCCAAAGCCCAGGAAGTCGTTAAA?CCTGTGGAGACGCCTTCGCCCCAATTGTGGCTGGCAGCGTGCGTCTTTAT-GGCGTGCTTCGGCATCTGTGCGCTCCCGGCACCGATCAGTGGGCTCTCCATTCGGCCCGTCTTGAAACACGGACCAAGGAGTCTGAC
Pyrola_picta                  TGGCAAGAGACCGATAGCGAACAAGTACCGCGAGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCGAATGGGGGCTGGCGATGCGCCC?GGTCGGATGTGGAACGGTGCAAT-GCCGGTCCGCCAATCGACTCGGGGTGTGGATCGGTGCGGATTGGGACGGAGGC-AAAGCCCAGGAAGTTGTTAA?GCCTGTGGAGACGCCTTCGCCTTGATCGTGGCTGGCAGCGTGCGCCCTT---GGC?TGCTTCGGCATCTGCACGCTCCAGGCACCGGCCAGTGGGCTCTCCATTCGGCCCGTCTTGAAACACGGACCAAGGAGTCTGAC
Rhododendron                  GGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCGAATGGGGGCCGGCGATGCGCCCCGGTCGGATGTGGAAAGGGCTAA-ACCCGGTCCGCCAATCGACTCGGGGTGTGGACCGGTGCGGATTGGGACGGAGGCCAAAGCCCAGGATGTCGTTAA?GCCTGAGGAGACGCCTTCGCCTCGATCGTGGCTGGCAGCGTGCGCCTTT---GGC?TGCTTCGGCATCTGCGCGCTCCCGGCACCGGCCAGTGGGCTCTCCATTCGGCCCGTCTTGAAACACGGACCAAGGAGTCTGAC
Sarcodes_sanguinea            GGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGAAAGATGAAAAGG?CTTTGAAAAGAGAGTCAAAAAGTGCTTGAAATTGTCGGGAGGGAAGCGAATGGGGGCCGGCGATATGCCTCGGTCGGATGTGGATCGG-TTAT-AGC?GGTCTACCAATCGACTCGGGGTGTGGATCGGTGCGGATTGGGACGGAGGCCAAAGCCCGGGTAATTGTTAG?ATCTGTGGAGATGCCTTCGCCCCAATTGTGGCTGGCAGCGTGCGCTTTTTT-GGCGTACTTCGGTATCTGCACGCTCCCGGCACTGACTAGTGGGCTCTCCATTCGGCCCGTCTTGAAACACGGACCAAGGAGTCTGAC
Vaccinium_ovatum              TGGC?AGAGACCGATAGCAAACAAGTACCGAGAGGAAAGATGAGAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCGAATGGGGGCCGGCGATGCGCC?CGGTCGGATGTGGAACGG-CTAATACCCGGTCCGCCAATCGACTCGGGGTGTGGACCGGTGCGGATTGGGACGGAGGCCAAAGCCCAGGCAGTCGTTAA?GCCTGCGGAGACGCCTTCGCCTTGATCGTGGCTGGCAGCGTGCGCCCTT---GGC?TGCTTCGGCATCTGCGCGCTCCCGGCACCGGCCAGTGGGCTCTCCATTCGGCCCGTCTTGAAACACGGACCAAGGAGTCTGAC
Vaccinium_scoparium           TGGC?AGAGACCGATAGCAAACAAGTACCGAGAGGAAAGATGAGAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCGAATGGGGGCCGGCGATGCGCC?CGGTCGGATGTGGAACGG-CTAATACCCGGTCCGCCAATCGACTCGGGGTGTGGACCGGTGCGGATTGGGACGGAGGCCAAAGCCCAGGCAGTCGTTAA?GCCTGTGGAGACGCCTTCGCCTTGATCGTGGCTGGCAGCGTGCGCCCTT---GGC?TGCTTCGGCATCTGCGCGCTCCCGGCACCGGCCAGTG???TCTCCATTCGGCCC???TTGAAACACGGACCAAG???TCTGAC
;
END;

BEGIN TREES;
      TITLE Tb5079;
      LINK TAXA = Taxa1;
         TRANSLATE
            1    Vaccinium_scoparium,
            2    Vaccinium_ovatum,
            3    Pterospora_andromedea,
            4    Pleuricospora_fimbriolata,
            5    Sarcodes_sanguinea,
            6    Monotropa_hypopithys,
            7    Arctostaphylos_sp.,
            8    Arctostaphylos_glandulosa,
            9    Arctostaphylos_pungens,
            10   Ledum_glandulosum,
            11   Rhododendron,
            12   Pyrola_picta;
      TREE Fig._2 = [&R] (((1,2)Vaccinoideae,(((((3,6),5),4)Monotropoideae,(7,9,8)Arbutoideae),(10,11)Rhododendroideae)),12);
      TREE Fig._3A = [&R] (((1,2)Vaccinium,(((3,6),5),4,(9,8)Arctostaphylos)),12);
      TREE Fig._3B = [&R] (((1,2),(((3,6),5),(9,8))),12);



END;