#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 26, 2024; 14:52 GMT TreeBASE (cc) 1994-2008 Study reference: Govindaraju D., Lewis P., & Cullis C. 1992. Phylogenetic analysis of pines using ribosomal DNA restriction fragment length polymorphisms. Plant Systematics and Evolution, 179: 141-153. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S327] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=33; TAXLABELS Larix_decidua Picea_pungens Pinus_aristata Pinus_armandii Pinus_attenuata Pinus_ayacahuite Pinus_banksiana Pinus_cembra Pinus_contorta Pinus_coulteri Pinus_densiflora Pinus_echinata Pinus_edulis Pinus_elliotti Pinus_flexilis Pinus_jeffreyi Pinus_koraiensis Pinus_lambertiana Pinus_leiophylla Pinus_mugo Pinus_muricata Pinus_nigra Pinus_peuce Pinus_ponderosa Pinus_pumila Pinus_radiata Pinus_resinosa Pinus_rigida Pinus_sabiniana Pinus_strobus Pinus_sylvestris Pinus_taeda Tsuga_canadensis ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3505] TITLE Table_2; LINK TAXA = Taxa1; DIMENSIONS NCHAR=50; FORMAT DATATYPE=Standard SYMBOLS= "+ , -" MISSING=? GAP= "; CHARSTATELABELS 1 pBG35_EcoRI / present ',' absent, 2 pBG35_EcoRI / present ',' absent, 3 pBG35_EcoRI / present ',' absent, 4 pBG35_EcoRI / present ',' absent, 5 pBG35_EcoRI / present ',' absent, 6 pBG35_HindIII / present ',' absent, 7 pBG35_HindIII / present ',' absent, 8 pBG35_HindIII / present ',' absent, 9 pBG35_HindIII / present ',' absent, 10 pBG35_HindIII / present ',' absent, 11 pBG35_Eco_RV / present ',' absent, 12 pBG35_Eco_RV / present ',' absent, 13 pBG35_Eco_RV / present ',' absent, 14 pBG35_Eco_RV / present ',' absent, 15 pBG35_Eco_RV / present ',' absent, 16 pBG35_Bam_H1 / present ',' absent, 17 pBG35_Bam_H1 / present ',' absent, 18 pBG35_Bam_H1 / present ',' absent, 19 pBG35_Bam_H1 / present ',' absent, 20 phage_21_Eco_RI / present ',' absent, 21 phage_21_Eco_RI / present ',' absent, 22 phage_21_Eco_RI / present ',' absent, 23 phage_21_Eco_RI / present ',' absent, 24 phage_21_Eco_RI / present ',' absent, 25 phage_21_Hind_III / present ',' absent, 26 phage_21_Hind_III / present ',' absent, 27 phage_21_Hind_III / present ',' absent, 28 phage_21_Hind_III / present ',' absent, 29 phage_21_Hind_III / present ',' absent, 30 phage_21_Eco_RV / present ',' absent, 31 phage_21_Eco_RV / present ',' absent, 32 phage_21_Eco_RV / present ',' absent, 33 phage_21_Eco_RV / present ',' absent, 34 phage_21_Bam_H1 / present ',' absent, 35 phage_21_Bam_H1 / present ',' absent, 36 phage_21_Bam_H1 / present ',' absent, 37 plasmid_1938_Eco_RI / present ',' absent, 38 plasmid_1938_Eco_RI / present ',' absent, 39 plasmid_1938_Eco_RI / present ',' absent, 40 plasmid_1938_Eco_RI / present ',' absent, 41 plasmid_1938_Eco_RI / present ',' absent, 42 plasmid_1938_Hind_III / present ',' absent, 43 plasmid_1938_Hind_III / present ',' absent, 44 plasmid_1938_Hind_III / present ',' absent, 45 plasmid_1938_Hind_III / present ',' absent, 46 plasmid_1938_Eco_RV / present ',' absent, 47 plasmid_1938_Eco_RV / present ',' absent, 48 plasmid_1938_Bam_H1 / present ',' absent, 49 plasmid_1938_Bam_H1 / present ',' absent, 50 plasmid_1938_Bam_H1 / present ',' absent, ; MATRIX [ 10 20 30 40 50] [ . . . . .] Larix_decidua ---+--?-----+--+-------?-----+----+--+--------++-- Picea_pungens +-----?-+-+--------+---?--+--+---+--------+--++--- Pinus_aristata ---++-+-+-+--+-+------++-+-+--++-+---+--+--+-+-+-- Pinus_armandii ---+++-+--+--+--+++---++-+-+-+----++-+--+-+--+--++ Pinus_attenuata +-+--+---+-++-++----++--+-+-+-++++--++---+--++++-- Pinus_ayacahuite ---+++-+--+--+--+++---++-+-+-+----++-+--+-+--+--++ Pinus_banksiana -++--+---+-++-++----++--+-+-+-++++--+--+-++--+++-- Pinus_cembra ----++-+--+--+--+++---++-+-+-+----++-+--+-+--+--++ Pinus_contorta -++--+---+-++-++----++--+-+-+-++++--+--+-++--+++-- Pinus_coulteri +--+-+---+-++--+----+-+-+-+-+-++-+---+---++--+++-- Pinus_densiflora +--+---+--+--+-+---+--+----+-+---+--+-+--+--++-+-- Pinus_echinata -++--+---+-++-++----++--+-+-+-++++--+-+--++--+++-- Pinus_edulis ---++-+-+-+--+-+------++-+-+--++--++-+--+--+--++-- Pinus_elliotti -++--+---+-++-++----++--+-+-+-++++--+-+--++--+++-- Pinus_flexilis ---+++-+--+--+--+++---++-+-+-+----++-+--+-+--+--++ Pinus_jeffreyi -+---+---+-++--+----+-+-+-+-+-++-+--+--+-+---+++-- Pinus_koraiensis ----++-+--+--+--+++---++-+-+-+----++-+--+-+--+--++ Pinus_lambertiana ---+++-+--+--+--+++---++-+-+-+----++-+--+-+--+--++ Pinus_leiophylla +-+--+---+-++-++----++--+-+-+-++++--++---+--++++-- Pinus_mugo +--+---+--+--+-+---+--+----+-+---+--+-+--+--++-+-- Pinus_muricata +-+--+---+-++-++----++--+-+-+-++++--++---+--++++-- Pinus_nigra +--+---+--+--+-+---+--+----+-+---+--+-+--+--++-+-- Pinus_peuce ---+++-+--+--+--+++---++-+-+-+----++-+--+-+--+--++ Pinus_ponderosa -+---+---+-++--+----+-+-+-+-+-++-+--+--+-+---+++-- Pinus_pumila ----++-+--+--+--+++---++-+-+-+----++-+--+-+--+--++ Pinus_radiata +-+--+---+-++-++----++--+-+-+-++++--++---+--++++-- Pinus_resinosa +--+---+--+--+-+---+--+----+-+---+--+-+--+--++-+-- Pinus_rigida -++--+---+-++-++----++--+-+-+-++++--+-+--++--+++-- Pinus_sabiniana +--+-+---+-++--+----+-+-+-+-+-++-+---+---++--+++-- Pinus_strobus ---+++-+--+--+--+++---++-+-+-+----++-+--+-+--+--++ Pinus_sylvestris +--+---+--+--+-+---+--+----+-+---+--+-+--+--++-+-- Pinus_taeda -++--+---+-++-++----++--+-+-+-++++--+-+--++--+++-- Tsuga_canadensis ---+--?-+------????----?--+--+---???---------+---- ; END; BEGIN TREES; TITLE Tb5100; LINK TAXA = Taxa1; TRANSLATE 1 Picea_pungens, 2 Larix_decidua, 3 Tsuga_canadensis, 4 Pinus_koraiensis, 5 Pinus_pumila, 6 Pinus_cembra, 7 Pinus_strobus, 8 Pinus_lambertiana, 9 Pinus_flexilis, 10 Pinus_ayacahuite, 11 Pinus_peuce, 12 Pinus_armandii, 13 Pinus_edulis, 14 Pinus_aristata, 15 Pinus_resinosa, 16 Pinus_nigra, 17 Pinus_mugo, 18 Pinus_sylvestris, 19 Pinus_densiflora, 20 Pinus_taeda, 21 Pinus_rigida, 22 Pinus_echinata, 23 Pinus_elliotti, 24 Pinus_ponderosa, 25 Pinus_jeffreyi, 26 Pinus_sabiniana, 27 Pinus_coulteri, 28 Pinus_banksiana, 29 Pinus_contorta, 30 Pinus_radiata, 31 Pinus_attenuata, 32 Pinus_muricata, 33 Pinus_leiophylla; TREE Fig._3 = [&R] ((((((4,6,5),(12,11,10,9,8,7)),(13,14)),(19,18,17,16,15)),(((((20,23,22,21),(29,28)),(33,32,31,30)),(25,24)),(27,26))),3,2,1); END; BEGIN TREES; TITLE Tb5099; LINK TAXA = Taxa1; TRANSLATE 1 Picea_pungens, 2 Larix_decidua, 3 Tsuga_canadensis, 4 Pinus_koraiensis, 5 Pinus_pumila, 6 Pinus_cembra, 7 Pinus_strobus, 8 Pinus_lambertiana, 9 Pinus_flexilis, 10 Pinus_ayacahuite, 11 Pinus_peuce, 12 Pinus_armandii, 13 Pinus_edulis, 14 Pinus_aristata, 15 Pinus_resinosa, 16 Pinus_nigra, 17 Pinus_mugo, 18 Pinus_sylvestris, 19 Pinus_densiflora, 20 Pinus_taeda, 21 Pinus_rigida, 22 Pinus_echinata, 23 Pinus_elliotti, 24 Pinus_ponderosa, 25 Pinus_jeffreyi, 26 Pinus_sabiniana, 27 Pinus_coulteri, 28 Pinus_banksiana, 29 Pinus_contorta, 30 Pinus_radiata, 31 Pinus_attenuata, 32 Pinus_muricata, 33 Pinus_leiophylla; TREE Fig._2 = [&R] (((((4,6,5),(12,11,10,9,8,7)),(13,14)),(19,18,17,16,15),(((((20,23,22,21),(29,28)),(33,32,31,30)),(25,24)),(27,26)))Pinus,3,2,1); END;