#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 19, 2024; 10:33 GMT TreeBASE (cc) 1994-2008 Study reference: Loconte H., & Stevenson D. 1991. Cladistics of the magnoliidae. Cladistics, 7: 267-296. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S334] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=56; TAXLABELS Alismataceae Amborellaceae Annonaceae Aristolochioideae Asarumoideae Ascarina Austrobaileyaceae Berberidaceae Butomaceae Cabombaceae Calycanthaceae Canellaceae Cercidiphyllaceae Chloranthus Coniferales Cycadales Degeneriaceae Ephedraceae Eupomatiaceae Eupteleaceae Ginkgoales Gnetum Gomortegaceae Gyrocarpus Hamamelidaceae Hedyosmum Hernandia Himantandraceae Idiospermaceae Illiciaceae Illigera Lactoridaceae Lardizabalaceae Lauraceae Limnocharitaceae Magnoliaceae Menispermaceae Monimiaceae Myristicaceae Nelumbonaceae Nymphaeaceae Papaveraceae Piperaceae Platanaceae Pteridophyta Ranunculaceae Sarcandra Saruma Saururaceae Shisandraceae Sparattanthelium Tetracentraceae Trimeniaceae Trochodendraceae Welwitschia Winteraceae ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1687] TITLE Table_2; LINK TAXA = Taxa1; DIMENSIONS NCHAR=104; FORMAT DATATYPE=Standard SYMBOLS= "0 1 2 3 4 5 *" MISSING=? GAP= -; CHARSTATELABELS 1 Habit / 'shrub (n)' tree herb, 2 Stem_vasculature / circular cortical scattered, 3 Cambial_initials / long short, 4 Xylem_conduction / tracheids 'vessels foraminate perforate (n' vessels_scalariform_perforate vessels_simple_perforate, 5 Vessel_distribution / whole_plant roots_only, 6 Primary_pitting / late_ontogeny_of_tracheary_elem early_ontogeny_of_tracheary_ele, 7 'Sieve-tube element companion ce' / absent present, 8 Secondary_phloem / 'non-stratified' tangentially_stratified, 9 'Sieve-tube plastic inclusions' / starch protein, 10 Pith_structure / nonseptate sclereid_septate, 11 Sclereids / 'non-hippocrepiform' hippocrepiform, 12 Corticalsclerenchyma_sheath / absent present, 13 Laticifers / absent present, 14 Oil_cells / absent present, 15 Nodal_anatomy / 'unilacunar two-trace' 'unilacunar one-trace' trilacunar multilacunar, 16 Nodal_morphology / 'non-swollen' swollen, 17 Axillary_buds / absent present multiple, 18 Phyllotaxy / alternate opposite, 19 Ptyxis / circinate adplicate conduplicate supervolute involute, 20 Leaf_type / compound simpl, 21 Leaf_peltate / absent present, 22 Leaf_base / simple 'sheathing (n)' stipulate, 23 Leaf_venation / dichotomous pinnate palmate, 24 Leaf_margin / entire toothed, 25 Leaf_persistence / evergreen deciduous, 26 Leaf_pubescence / absent present, 27 Foliar_astrosclereids / absent present, 28 Foliar_cystoliths / absent present, 29 Stomates / anomocytic paracytic laterocytic 'stephanocytic (n)' 'encyclocytic (n)', 30 Infloresence / 'absent (flowers solitary)' present, 31 Floral_pedicel / present absent, 32 Floral_primordium_symmetry / radial 'bilateral (dorsiventral)', 33 Calyptra / absent present, 34 Perianth_arrangement / helical cyclic_and_trimerous cyclic_and_four_or_five_merous absent, 35 Petals / absent tepaloid staminoidal, 36 Perianth_androecium_alignment / alternate opposite, 37 Sexual_expression / dioecious monoecious monoclinous, 38 Stamen_type / connective_with_marginal_sporan 'laminar (with adaxial or abaxia' 'filamental (with terminal spora', 39 Stamen_arrangement / helical cyclic, 40 Staminal_osmophore / absent present, 41 Monadelphy / absent present, 42 Filament_appendage / absent present, 43 Anther_dehiscence / longitudinal bifurcate valvate, 44 Connective_hypodermic / absent 'endothecial-like', 45 Tapetum / glandular amoeboid, 46 Microsporogenesis / simultaneous successive, 47 Pollen_unit / monads tetrads, 48 Pollen_size / 'medium (20-50 pm)' 'large (greater than 50pm)' 'small (less than 20pm)', 49 Pollen_shape / 'boat-shaped' intermediate globose, 50 Pollen_saccate / absent present, 51 Pollen_apertures / monosulcate 'disulcate (n)' tricolpate 'holoaperturate (n)' 'ulcerate (n)' 'polyaperturate (n)', 52 Apertures / free fused, 53 Examine_sculpture / psilate 'punctate (n)' reticulate 'striate (n)', 54 Pollen_exine_surface / smooth spinulose spinose, 55 Exine_structure / alveolar granular 'solid (n)' columellate 'chanellate (n)', 56 Endexine / continuous discontinuous absent, 57 Pollen_tube_growth / suspended penetrating, 58 Microgametophyte / prothallial_and_sterile_cells_p sterile_cells_absent prothallial_and_sterile_cells_a, 59 Microgametophyte_final_mitotic / 'post-pollination' prepollination, 60 Sperm / flagellated 'non-flagellated', 61 Inner_staminodes / present absent, 62 Carpel_type / open closed, 63 Carpel_arrangement / helical 'cyclic (n)' solitary, 64 Floral_cup / absent present, 65 Gynoecial_nectaries / absent present, 66 Placentation / marginal laminar apical basal parietal exile, 67 Ovule_type / orthotropous anatropous, 68 Ovule_number / uniovulate_or_biovulate multiovulate, 69 Micropylar_tube / absent present, 70 Integuments / unitegmic bitegmic, 71 Nucellar_cuticle / thin thick, 72 Megagametophyte_meiosis / monosporic tetrasporic, 73 Megaspore_wall / thick thin, 74 Megagametophyte_apex / cellular 'free-nuclear', 75 Fertilization / single double, 76 Fruit_type / dehiscent berry achene drupe, 77 Seed_size / 'large (>5 mm)' 'small (<5 mm)', 78 Seed_coat_anatomy / endotestal mesotestal exotestal tegmic, 79 Seed_aril / exarillate arillate, 80 Sarcotestum / absent present, 81 Seed_chalazal_wings / absent present, 82 Seeds_operculate / absent present, 83 Endosperm_development / cellular nuclear helobial, 84 Endosperm_type / absent present perisperm, 85 Ruminate_endosperm / absent present, 86 Embryogenesis / 'free-nuclear' onagrad_type asterad_type caryophyllad_type solanum_type, 87 Embryo_size / minute large, 88 Embryo_with_feeder / absent present, 89 Germination / hypogeal epigeal, 90 Root_system / allorhizic homorhizic, 91 Cotyledon_number / two two_laterally_fused one 'three or more (n)', 92 Lignin_subunits / vanillin syringal_aldehyde, 93 Hydrolyzable_tannin / absent present, 94 Proanthocyanidin_leucoanthocyan / present absent, 95 Cyanidin / absent present, 96 'Methoxy-anthocyanidin' / absent present, 97 '3" 4" 5"-Methoxy-flavonol myric' / absent present, 98 '7 3" 4" or 5"-Methoxy-Ravonol' / absent present, 99 '8-Oxygenated-flavonol' / absent present, 100 Dihydrofiavonol / absent present, 101 Apigenin / absent present, 102 'C-Glycosylfavone' / absent present, 103 Isoflavone / absent present, 104 Benzylisoquinoline / absent present, ; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 ] [ . . . . . . . . . . . . . . . . ] Alismataceae 221210101000103010310120100031000100{02}2{01}0000011002050113212111110131{01}0110101{12}1200002003001121010000000100 Amborellaceae 0000-01000100?1010?100110100{01}100000000000000??002040113212011010000001101013120000?10?10?001001000000000 Annonaceae {01}013001{01}1100012010210010{01}{01}101{01}000110{02}{01}00{01}011{01}{01}{01}{01}00{01}0{012}0{23}2120110000{014}1{01}0110101001{01}000011110{01}001000010001001 Aristolochioideae {02}0130010{01}00001201021012011000{01}0001002010{01}0000{01}002050?03?12011111051101101011130000010410?001011101000001 Asarumoideae 201300101000012010210020{01}100000001002010000000002050?03?12011111051101101011130000010410?00101??0?000000 Ascarina {01}01200100000010111?1021100004100030-0010000100002000213012011120020001101010100000010?10?001011000000000 Austrobaileyaceae 0012001000000100112100100000{01}00000002100000000002000103012010100011101101010000100?11-110001011000000000 Berberidaceae {01}{02}130010000100?010200121{01}{01}0001000121221000{02}000001020103012011120001{01}011010101{23}{01}0001101101001001011011001 Butomaceae 221310101000003010-1012010001100010022100000110000001032121111101111011010111200002003001121010000000100 Cabombaceae 22131010000010301{01}?110201{01}00000001102210000001010000303112011110011{01}0110101{12}120001220?10?111010000000100 Calycanthaceae 011300101000010021110010{01}1001000000020000000000{01}1010{01}030120101010010011010-2000000000?001001011001001000 Canellaceae 101200101010012010?100100010{01}{01}000{012}10201010000000{01}000{01}0{13}21201102003100110101101100011{01}1100001000000011010 Cercidiphyllaceae {01}0120010000000201141022110000111030-0010001100001020113112011120001101101011120010010300?001100000010000 Chloranthus {02}012001000000101112102110000{123}111030-2011000000002050203012011120020001101010100000010110?001011000000000 Coniferales {01}000-100{01}00000101{01}110000{01}0000-{01}0----{01}-------{01}0000{01}0000?01001------{01}00000{01}00-0-{01}{01}00-0-00010{03}000{01}000010{01}00 Cycadales -000-0000000003000{012}00{12}0001000-00----0-------0000000000000000------0{01}0000000-0-0100-0-00000000{01}0000000{01}00 Degeneriaceae 1012001111000130102100100000100001102100001000010000002212010020011101101010000100011?101031001101000100 Ephedraceae 00110100000000002111010000000-{01}0----{01}-------000{01}003-30101001------001000100-02-000-0-0001001000000000101 Eupomatiaceae {01}012001010000130102100100{01}101000130-2100{01}010000010100022120100010111011010100100000111101001000000001001 Eupteleaceae {01}0120010000000-01021001111100101030-20100011??0010{25}0113012010110001{01}01101012120000010?10?001000010000000 Ginkgoales 1000-100000000001041000010000-00----0-------0000000000000000------000000000-0-0-00-0-0000000000000000000 Gnetum {01}01{12}0100000000312121011000101-{01}0----{01}-------0002103-01101101------001101110-02-000-0-1011001000000001101 Gomortegaceae 101200101010011011-1001001001100010022000120??00203-124-120111110410011010130?0000?10?00?001010?00000000 Gyrocarpus 101300101000011010?10020110101000101{12}2100120?100203-124-12011121021001101012000000000?00?001010001000001 Hamamelidaceae {01}01200100000002010{123}102{12}11100{0124}1{01}10220201000{01}100001020{12}03{12}12011110051{01}011010110{02}0000110?001001101010011100 Hedyosmum {012}0120010-0000101112102110000{23}11101000010{01}00100002050213?12011120020001101010101000010?10?001011000000000 Hernandia 101300101000011010?10020010011000101{12}2100100?100203-124-12011121021001101012000000000?000001010001000001 Himantandraceae 10120011010001201021001001101000100021000010??001000002212010100011001101013000000?11?10?001001101000000 Idiospermaceae -11300101000011011110010010010000000{12}0000000??001010003?120101210310011010-2000000-00?000031011000001100 Illiciaceae 00120010000001101031001{01}0010{12}{01}0000002000000000002021203012011010001001101011110000010210?001100000010000 Illigera 001300101000011010?000-001001100010122100100?100203-124-12011121021001101012000000000?000001010001000001 Lactoridaceae 001300100000010110-1020000000{01}000100{02}0100000??102100{01}0{13}212011110001101101011120000110?10?001011000000000 Lardizabalaceae 00120010000100201020001{01}{01}{01}00010001211010{01}0000000102010301201011000{01}10110101{01}120000010?10?001001001001{01}00 Lauraceae {01}0120010100001101{01}{14}100{12}0{01}11011000101{012}21001201100203-124-12011121021001101013000000{01}00?000001001111011101 Limnocharitaceae 2212101010001030103101201{01}001{01}00010022{01}00000110020501032121111101111011010111200002003001121010000000100 Magnoliaceae {01}0120011{01}100013010210210{01}{01}10{01}000{01}000{12}10000{01}0000{01}0000{01}0{13}2120110000011011010110001000101101001001101000001 Menispermaceae {01}01300100000002010{12}{01}00{12}{01}{01}110{14}100012102{01}0{01}00000001020103112011110001001101013{01}200001{01}{01}1001001010000001001 Monimiaceae {01}0120010{01}01001101121001{01}01001{01}000000{012}200{01}1{012}0{01}{01}00{12}0{13}-?2?-120111{02}{01}0{23}10011010130000000102101001000011000001 Myristicaceae 10120011{01}100012010?100100110110001000010100001000000{012}0{13}11201111004110110101012{01}000?11?10?001000000001011 Nelumbonaceae 2212101000001030104111201000000000102000000000011020103012011110021001101012020001000?00?111000000001001 Nymphaeaceae 22121010000010301041012{01}10100000002020000000{01}001000011{13}112{01}1111001{01}10110101012{01}0010202100111101110001100 Papaveraceae 2{02}130010000010?010{1234}{01}012111000{01}0001202200{01}000000010201{01}31120111100411011010111200001104101001011001100001 Piperaceae {012}{02}1200100000013110?10120110031{01}1030?{012}210000000021000003012011110040{01}011{01}1011130000020210100100000000010{01} Platanaceae 1012001000000030102102{12}11100{012}1110{12}2110{01}0001100001020103{12}12010110020001101012120000110?10?001001010011000 Pteridophyta ---0-{01}00000000?000{01}00{12}000{01}00-------------------------------0--------------0--------0--1--120000000001{01}00 Ranunculaceae 20120010000000?010{134}{01}01{02}111000{01}000120{02}20000{01}0000010203{01}311201110000{01}{01}0110101{01}1200001101101001001101101101 Sarcandra 000210100000010111-102110000{1234}111030-2011001000002050203?12011120020001101010100000010110?001011000000000 Saruma 201300101000012010?10120110000000110221000000?001000203?12011111001101101011130000010410?00101??0?000000 Saururaceae 20120010000001311041012011003101030?2210000000021000003012011110010{01}011010121300000202101001000000000000 Shisandraceae 00120010000001-010{34}1001{01}{01}010{012}{01}000000{012}000{01}000000020{25}1203012011000001101101010110000010{12}10?001101010000000 Sparattanthelium 001300101000011010?1002001010100010122100120?100203-124-12011121021001101012000000000?00?001010001000001 Tetracentraceae 1000-01000000120104102211000211?020122100011??021020303012011111141101101011120010010?10?001000001010000 Trimeniaceae {01}01200100000010011?1001{01}0{01}0011000000{12}0000000?10020{15}0113212021120021001101010100000?10?10?001000101010100 Trochodendraceae 1000-010000001?01031001100102101030-2200001100021020303012011111141101101011120010010?10?001000010000000 Welwitschia 00110100000000002111010000101--0----{02}-------000{01}000030101101------001101110-02-000-0-1011001000000000101 Winteraceae {01}000-010{01}0000120103100100{01}10{01}{01}00{01}010{02}0000001{01}01020402030120110000{01}1{01}01101010120000010?101001000000011000 ; END; BEGIN TREES; TITLE Tb5109; LINK TAXA = Taxa1; TRANSLATE 1 Pteridophyta, 2 Cycadales, 3 Ginkgoales, 4 Coniferales, 5 Ephedraceae, 6 Welwitschia, 7 Gnetum, 8 Idiospermaceae, 9 Calycanthaceae, 10 Austrobaileyaceae, 11 Himantandraceae, 12 Degeneriaceae, 13 Magnoliaceae, 14 Eupomatiaceae, 15 Annonaceae, 16 Canellaceae, 17 Myristicaceae, 18 Ascarina, 19 Hedyosmum, 20 Sarcandra, 21 Chloranthus, 22 Trimeniaceae, 23 Monimiaceae, 24 Gomortegaceae, 25 Lauraceae, 26 Hernandia, 27 Illigera, 28 Gyrocarpus, 29 Sparattanthelium, 30 Amborellaceae, 31 Winteraceae, 32 Illiciaceae, 33 Shisandraceae, 34 Lactoridaceae, 35 Lardizabalaceae, 36 Berberidaceae, 37 Menispermaceae, 38 Papaveraceae, 39 Ranunculaceae, 40 Eupteleaceae, 41 Platanaceae, 42 Hamamelidaceae, 43 Cercidiphyllaceae, 44 Tetracentraceae, 45 Trochodendraceae, 46 Saruma, 47 Asarumoideae, 48 Aristolochioideae, 49 Saururaceae, 50 Piperaceae, 51 Cabombaceae, 52 Nelumbonaceae, 53 Nymphaeaceae, 54 Butomaceae, 55 Limnocharitaceae, 56 Alismataceae; TREE 'Figs. 1-10' = [&R] (1,(2,(3,(4,(((6,7)Gnetaceae,5)Gnetales,((9,8)Calycanthales,((((((17,16),15),14)Annonineae,(11,12,13)Magnolineae),10)Magnoliales,((((((((26,27)Hernandioideae,(28,29)Gyrocarpoideae)26ceae,25),24),23),22),((18,19)Ascarinoideae,(21,20)Chloranthoideae)Chloranthaceae)laurales,((30,(31,(32,33)Illicineae))Illiciales,(34,(((((38,39)Ranunculineae,37,36),35)Ranunculales,(40,((41,42),(43,(44,45)))))Tricolpates,((46,(48,47)Aristolochiaceae)Aristolochiales,((49,50)piperales,((51,(52,53)Nymphaeineae)Nymphaeales,(54,(56,55))Alismatidae)))))))))angiosperms)Anaspermae)Mesospermae)Cladospermae)Spermatophyta); END;