#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 27, 2024; 7:33 GMT TreeBASE (cc) 1994-2008 Study reference: Schardl C.L., & Leuchtmann A. 1999. Three new species of Epichlo symbiotic with North American grasses. Mycologia, 91(1): 95-107. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S344] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=28; TAXLABELS Claviceps_fusiformis_26245 Claviceps_purpurea_20102 Echinodothis_tuberiformis Epichloe_amarillans_200743 Epichloe_amarillans_201670 Epichloe_amarillans_90815 Epichloe_baconii_200745 Epichloe_baconii_90167 Epichloe_brachyelytrum_200752 Epichloe_brachyelytrum_201561 Epichloe_bromicola_200750 Epichloe_bromicola_201558 Epichloe_clarkii_200741 Epichloe_clarkii_90168 Epichloe_elymi_201553 Epichloe_elymi_201555 Epichloe_festucae_201550 Epichloe_festucae_90661 Epichloe_glyceriae_200747 Epichloe_glyceriae_200755 Epichloe_sylvatica_200748 Epichloe_sylvatica_200751 Epichloe_typhina_200736 Epichloe_typhina_200737 Epichloe_typhina_200739 Epichloe_typhina_200849 Epichloe_typhina_200851 Epichloe_typhina_201667 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M950] TITLE ; LINK TAXA = Taxa1; DIMENSIONS NCHAR=658; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Claviceps_fusiformis_26245 AAGT-CAA-ACCGTC-TCGCTGTGTTTGCCCAAGAGGG?GGGAGGGGGGAAGTTTGTTCCCTCCCTACTCGACGCGTGCCAAGCGCTGAGCCCCTGATTTTGTCACCCC-----GCCGTGCATAT---CCCACATCTT-GCAGGCTCGACGAACCATCGTTG-TTGGGGACAAATTGAGA-----TCAAACCAATTCGTTTGTTGATTTTTTTTTGTTTCTTCAC------C-TTGGCTAACCTCTTTCTTTCTTTGTATTCTTT--------TCCCT-TCAAATAGGT?CATCTTCAGACCGGTCAGTGCGTAAGTAACGAAATCT-ATCGGCATCGAATGGCATGA---AAACAA-AC---TAGAGACT----CA-CTT-CTTTCGACAGGGTAACCAAATTGGTGCTGCTTTCTGGCAAACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAACGGCACTTCGGAGCTCCAGCTCGAGCGTATGAGCGTCTACTTCAACGAGGTGCGTAACGACGATGAAAGAATTCTTCTCTCCACA--CAA---CTCCCTACATGTTGTCGTTGTGGAAAACGATGAGATGGCAAGGA-AT-GCATGCAAAAGCAATTTGTACAAA--ATGCTAAACTACGCGATAGGCCTCT Claviceps_purpurea_20102 AAGT-CAATCCCGTCGTCGCTTTGTTTACC-----TTCCGGG---------------CCCCTCAGCCCTCGACGCGT---------TGAGCCCCTGA-TTTGAGACCCC-----GCCGAGCAAATGCCACCACGTCCT-GCGCGCCCGACGAACC-GCAATG-GCACAGGCAAATCGAGA-----TCAAATCAGTTGTAGTGAAGA----------TTGCCTCAC---------TGGCTGTCACGTTTCACTC----TATTCGTTGCTAATGCTCCCTCTCCAATAGGTTCACCTTCAGACCGGTCAGTGCGTAAGTAA?G-ACTCTCATCGACATCGAATG--CTGG---AAAC-G-AC---GGAAGACTTATGCA-ATTCCTCTCGACAGGGTAACCAAATCGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAGTGGTGTGTACAATGGTACCTCGGAGCAACAGCTCGAGCGCATGAGCGTCTACTTCAATGAGGTGTGTAA-ATTGATAAAGCAAATC-TCTACCAATATGCAATCCCTCGCTGCATGCCGGC----TGGAGAATG-TCCCA---CAATGAGAT-G--TG----AGCAACCTG--GGTC--ATGCTAAACTGTGCGATAGGCCTCT Echinodothis_tuberiformis GAGTTC----------CCTCTGTG-GCGTC------TTGG----------------------ACT-CTTTAACGCGTTGTAA-TGTTGAGCCTCTGATTT---------------CCGTGC----CCCTCCAACGCGTGGCACACCCATC---CACGC--TG--GACGGACGG-CCGAGACGAGGCATAAT--AT--GA-TGCA---------ATTTTCGACGACGATGAATTTTAGCTGACTTTGTTATTTCTTT--------------------CT----TATAGGTTCACCTTCAGACCGGCCAGTGCGTAAGTTTTAGGTTCATGGCCAC---GAACGACGCG------AT----CATGGGAGTAGGAGCTCACATTTATATGGGTAGGGTAACCAAATTGGTGCTGCTTTCTGGCAAACTATCCCTGGCGAGCACGGCCTTGACAGCAATGGCGTCTACAACGGTACCTCTGAGCTCCAGCTCGAGCGTATGAGCGTCTACTTTAACGAGGTAAGT-TTCGACGTC---AAAATTTGATC----ATTTGAGTCGC-------ATGGCGCCAT------------TTAGTTGGCA-----ATCG--AGTCTAGG------GTGCTT--GATGTTGACAAAGGAAAAAGGGCTCT Epichloe_amarillans_200743 AAGTTCAA--------CCTCTCTGTTTGTC------TTGGGGA----------------CCCCCT-CCTCGACGCGTTCC-GGTGTTGAGCCCCTGATTTCGT-ACCCC-----GCCGAGC----CCGGCCACGACGT-GCACGCCCAACGAAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATGAAC--GAATGCGG---------TATTCGAGAAC------TG-TAGCTGACC---TG-TTTCTTTCCCTCTTTT--------CCCCTC-----TAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGAC-AAATC-CGCCGACCTCGAACGAC-AGGCACAAACA--GCATG-AAAAACT----CACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTTGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAA--GTCTC----CATTGA---GCTACATACATACCGCC---CCGGA----GATGAGACGGAAA-GAGAACGAGAGAAAAAG-----TGT-CATC--ATGCTCATCCATGTGACAGGCTTCT Epichloe_amarillans_201670 AAGTTCAA--------CCTCTCTGTTTGTC------TTGGGGA----------------CCCCCT-CCTCGACGCGTTCC-GGTGTTGAGCCCCTGATTTCGT-ACCCC-----GCCGAGC----CCGGCCACGACGT-GCACGCCCAACGAAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATGAAC--GAATGCGG---------TATTCGAGAAC------TG-TAGCTGACC---TG-TTTCTTTCCCTCTTTT--------CCCCTC-----TAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGAC-AAATC-CGCCGACCTCGAACGAC-AGGCACAAACA--GCATG-AAAAACT----CACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATATCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTTGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAA--GTCTC----CATTGA---GCTACATACATACCGCC---CCGGA----GATGAGACGGAAA-GAGAACGAGAGAAAAAG-----TGT-CATC--ATGCTCATCCATGTGACAGGCTTCT Epichloe_amarillans_90815 AAGTTCAA--------CCTCTCTGTTTGTC------TTGGGGA----------------CCCCCT-CCTCGACGCGTTCC-GGTGTTGAGCCCCTGATTTCGT-ACCCC-----GCCGAGC----CCGGCCACGACGT-GCACGCCCAACGAAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATTAAC--GAATGCGG---------TATTCGAGAAC------TG-TAGCTGACC---GT-TTTCTTTCCCTCTTTT--------CCCCTC-----TAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGAC-AAATC-CGCCGACCTCGAACGAC-AGGCACAAACA--ACATG-AAAAACT----CACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTTGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAA--GTCTC----CATTGA---GCTACATACATACCGCC---CCGGA----GATGAGACGGAAA-GAGAACGAGAGAAAAAG-----TGT-CATC--ATGCTCATCCATGTGACAGGCTTCT Epichloe_baconii_200745 AAGTTCAA--------GCTCTCTGTTTGTC------TTGGGGA----------------CCCCCT-CCTCGACGCGTTCC-GGTGTTGAGCCCCTGATTTCGT-ACCCC-----GCCGAGC----CCGGCCACGACGT-GCACGCCCAACGAAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATTAAT--GAATGCGG---------TATTCGAGAAC------TG-TAGCTGACC---TG-TTTCTTTCCCTCTTTT--------CCCCTC-----TAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGAC-AAATC-CGCCGACCTCAAACGAC-GGGCACAAACA--GCATG-AAAAACT----CACATTCAT???GGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAA--GTCTC----CATTGA---GCTACATACATACCGCC---CCGGA----GATGAGACGGGAA-GAGAACGAAAGAAAAAG-----TGT-TATC--ATGCTCATCCATGTGACAGGCTTCT Epichloe_baconii_90167 AAGTTCAA--------ACTCCCTGTTTGTC------TTGGGGA----------------CCCCCT-CCTCGACGCGTTCC-GGTGTTGAGCCCCTGATTTCGT-ACCCC-----GCCGAGC----CCGGCCACGACGT-GCACGCCCAACGAAC-AGTCGTGATGAGAGGCGGATCGAGAC-----AAAATTAAT--GAATGCGG---------TATTCGAGAAC------TG-TAGCTGACC---TG-TTTCTTTCCCTCTTTT--------CTCCTC-----TAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGAC-AAAT--CGCCGACCTCGAACGAC-AGGCACAAACA--GCATG-AAAAACT----CACATTCTTTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAA--GTCTC----CGTTGA---GCTACATACATACCGCC---CCGGA----GATGAGACGGAAA-AAGAACGAAAGAAAAAG-----TGC-TATC--ATGCTCATCCATGTGACAGGCTTCT Epichloe_brachyelytrum_200752 AAGTTCAA--------CCTCTCTGTTTGTC------TTGGGGA----------------CCCCCT-CCTCGACGCGTTCC-GGTGTTGAGCCCCTGATTTCGA-ACCCC-----GCCGAGT----GCGGCCACGACGT-GCACGCCCAACGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATTCAT--GAATGCGG---------TATTCGAGAAC------TG-TAGCTGACC---TT-TTTCT----------T--------TCCCTC-----TAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGAC-AAATC-CGCCGACCTCGGACGAC-AGGCACAAATA--ACATG-AAAAACT----CACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAA--GTCTC----CATTGA---GC----TACATACCGCC---CTGGA----GATGAGACGGAAA-GAGAAGGAAAGAAAAAG-----TGT-CATC--ATGCTAATCTATGTGACAGGCTTCT Epichloe_brachyelytrum_201561 AAGTTCAA--------CCTCTCTGTTTGTC------TTGGGGA----------------CCCCCT-CCTCGACGCGTTCC-GGTGTTGAGCCCCTGATTTCGA-ACCCC-----GCCGAGT----GCGGCCACGACGT-GCACGCCCAACGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATTCAT--GAATGCGG---------TATTCGAGAAC------TG-TAGCTGACC---TT-TTTCT----------T--------TCCCTC-----TAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGAC-AAATC-CGCCGACCTCGGACGAC-AGGCACAAATA--ACATG-AAAAACT----CACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAA--GTCTC----CATTGA---GC----TACACACCGCC---CTGGA----GATGAGACGGAAA-GAGAAGGAAAGAAAAAG-----TGT-CATC--ATGCTAATCTATGTGACAGGCTTCT Epichloe_bromicola_200750 AAGTTCAA--------CCTCTCTGTTTGTC------TTGGGGA----------------CCCCCT-CCTCGACGCGTTCC-GGTGTTGAGCCCCTGATTTCGT-ACCCC-----GCCGAGC----CCGGCCACGACGT-GCACGCCCAATGAAC-AGTCGTGATGAGAGGCGGACCGAGACAAAAAAAAAATGAT--GATTGCGG---------TATTCGAGAAC------TG-TAGCTGACC---TT-TTCCT----------T--------CCCCTC-----TAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGAC-AAATC-CGCCGACCTTGAACGAC-AGGCACAAACAACACATG-AAAAACT----CACATTTCTTTGGGCAGGGT????????????????????????CAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTGTACAACGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGCGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAA--GTCTC----CATTGA---GC----TACATACCGCC---CTGGA----GATGAGACGGAAA-GAGAACGATA--AAAAG-----TGT-TAAC--ATGCTAATCTATGTGACAGGCTTCT Epichloe_bromicola_201558 AAGTTCAA--------CCTCTCTGTTTGTC------TTGGGGA----------------CCCCCT-CCTCGACGCGTTCC-GGTGTTGAGCCCCTGATTTCGT-ACCCC-----GCCGAGC----CCGGCCACGACGT-GCACGCCCAATGAAC-AGTCGTGATGAGAGGCGGACCGAGACAAAAAAAAAATGAT--GATTGCGG---------TATTCGAGAAC------TG-TAGCTGACC---TT-TTCCT----------T--------CCCCTC-----TAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGAC-AAATC-CGCCGACCTCGAACGAC-AGGCACAAACAACACATG-GAAAACT----CACATTTCTTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAAACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTGTACAACGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGCGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAA--GTCTC----CATTGA---GC----TACATACCGCC---CTGCA----GATGAGACGGAAA-GAGAACGATA--AAAAG-----TGT-TAAC--ATGCTCATCTATGTGACAGGCTTCT Epichloe_clarkii_200741 GAGTTCAA--------CCTCTCTGTTTGTC------TTGGGGA----------------CCCCCTCCCTCGACGCGTTCC-AGTGTTGAGCCCCTGATTTCGT-ACCCC-----GCCGAGC----CCGGCCACGACGT-GCACGCCCAACGGACAAGTCGTGATGAGAGGCGGACCGAGAC-----AACATTGAT--GAATGCGG---------TATTCGAAAAC------CG-TAGCTGACC--TTT-TTTCT----------T--------TGCCTC-----TAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGAC-AAATC-CGCCGACCTCGAACGAC-AGGCACAAATA--ACATG-AAAAACT----CACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTCTTCATAATCTACAAAA--GTCTC----CATTGA---GC----TACATACTGCC---CTGGA----GATGGGGCGGGAG-AAGATGGAAAGGAAAAG-----TGT-TATC--ATGCTAATCTATGTGACAGGCTTCT Epichloe_clarkii_90168 GAGTTCAA--------CCTCTCTGTTTGTC------TTGGGGA----------------CCCCCTCCCTCGACGCGTTCC-AGTGTTGAGCCCCTGATTTCGT-ACCCC-----GCCGAGC----CCGGCCACGACGT-GCACGCCCAACGGACAAGTCGTGATGAGAGGCGGACCGAGAC-----AACATTGAT--GAATGCGG---------TATTCGAAAAC------CG-TAGCTGACC--TTT-TTTCT----------T--------TGCCTC-----TAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGAC-AAATC-CGCCGACCTCGAACGAC-AGGCACAAATA--ACATG-AAAAACT----CACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTCTTCATAATCTACAAAA--GTCTC----CATTGA---GC----TACATACTGCC---CTGGA----GATGGGGCGGGAG-AAGATGGAAAGGAAAAG-----TGT-TATC--ATGCTAATCTATGTGACAGGCTTCT Epichloe_elymi_201553 AAGTTTAA--------CCGCTCTGTTTGTC------TTGGGGA----------------CACCCT-CCTCGACGCGTTCC-GGTGTTGAGCCCCTGATTTCGT-ACCCC-----GCCGAGC----CCGGCCACGACGT-GCACGCCCAATGGACAAGTCGTGATGAGAGGCGGACCGAGAC---AAAAAATTAAT--GATTGCGG---------TATTCGAGAAC------TGTTAGCTGACC---TT-TTTCT----------T--------CCCCTC-----TAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGAC-AAATC-CGCCGACCTAGAACGAC-GGGCACAAATA--ACATG-AAAAACT----CACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAA--GTCTC----CATTGA---GC----TACATACCGCC---CTGGA----GATGAGACGGAAA-GAGAACGAAAGAAAAAG-----TGT-CATCATATGCTAATCTATGTGACAGGCTTCT Epichloe_elymi_201555 AAGTTTAA--------CCGCTCTGTTTGTC------TTGGGGA----------------CCCCCT-CCTCGACGCGTTCC-GGTGTTGAGCCCCTGATTTCGT-ACCCC-----GCCGAGC----CCGGCCACGACGT-GCACGCCCAATGGACAAGTCGTGATGAGAGGCGGACCGAGAC---AAAAAATTAAT--GATTGCGG---------TATTCGAGAAC------TGTTAGCTGACC---TT-TTTCT----------T--------CCCCTC-----TAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGAC-AAATC-CGCCGACCTAGAACGAC-GGGCACAAATA--ACATG-AAAAACT----CACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAA--GTCTC----CATTGA---GC----TACATACCGCC---CTGGA----GATGAGACGGAAA-GAGAACGAAAGAAAAAG-----TGT-CATCATATGCTAATCTATGTGACAGGCTTCT Epichloe_festucae_201550 AAGTTCAA--------CCTCTCTGTTTGTC------TTGGGGA----------------CCCCCT-CCTCGACGCGTTCC-GGTGTTGAGCCCCTGATTTCGT-ACCCC-----GCCGAGC----CCGGCCACGAAGT-GCACGCCCAACGAAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATTAAT--GAATGCGG---------TATTCGAGAAC------TG-TAGCTGACC---TG-TTTCTTTCCCTCTTTT--------CCCCTC-----TAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGAC-AAATT-CGCCGACCTCGAACGAC-AGGCACAAACA--GCATG-AAAAACT----CACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAA--GTCTC----CATTGA---GCTACATACATACCGCC---CCGGA----GATGGGACGGAAA-GAGAACGAAAGAAAAAG-----TGT-TATC--ATGCTCATCCATGTGACAGGCTTCT Epichloe_festucae_90661 AAGTTCAA--------CCTCTCTGTTTGTC------TTGGGGA----------------CCCCCT-CCTCGACGCGTTCC-GGTGTTGAGCCCCTGATTTCGT-ACCCC-----GCCGAGC----CCGGCCACGAAGT-GCACGCCCAACGAAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATTAAT--GAATGCGG---------TATTCGAGAAC------TG-TAGCTGACC---TG-TTTCTTTCCCTCTTTT--------CCCCTC-----TAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGAC-AAATT-CGCCGACCTCGAACGAC-AGGCACAAACA--GCATG-AAAAACT----CACATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAA--GTCTC----CATTGA---GCTACATACATACCGCC---CCGGA----GATGGGACGGAAA-GAGAACGAAAGAAAAAG-----TGT-TATC--ATGCTCATCCATGTGACAGGCTTCT Epichloe_glyceriae_200747 AAGTTCAA--------CCTCTCTGTTTGTC------TTGGGGA----------------CCC----CCTCGACGCGTTCC-GGTGTTGAGCCCCTGATTTCGT-ACCCC-----GCCGAGC----CCGGCCACGACGT-GCACGCCCAATGGAC-AGTCGTGATGAGAGGCGGATCGAGAC-----AAAATTAAA--GATTGCGG---------TATTCGAGAAC------TG-TAGCTGACC---TT-TTTCTTCCTCTCTTCT--------CCCCTC-----TAGG??CATC???AAACCGGTCAGTGCGTAAGTGAC-AAATT-CGCCGA?CTCGAGCGAC-AGGCACCAATA--ACATG-AAAAACT----CACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAA--GTCTC----CATTGA---GC----TATATACCGCC---CTGGA----GATGAGACGGAAA-GAGAACGAAAGAAAAAG-----TGT-CAT--AATGCTAATCTATGTGACAGGCTTCT Epichloe_glyceriae_200755 AAGTTCAA--------CCTCTCTGTTTGTC------TTGGGGA----------------CCC----CCTCGACGCGTTCC-GGTGTTGAGCCCCTGATTTCGT-ACCCC-----GCCGAGC----CCGGCCACGACGT-GCACGCCCAATGGAC-AGTCGTGATGAGAGGCGGATCGAGAC-----AAAATTAAA--GATTGCGG---------TATTCGAGAAC------TG-TAGCTGACC---TT-TTTCTTCCCCTCTTCT--------CCCCTC-----TAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGAC-AAATT-CGCCGACCTCGAGCGAC-AGGCACCAATA--ACATG-AAAAACT----CACATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGTCTTCATAATCT---AAA--GTCTC----CATTGA---GC----TATATACCGCC---CTGGA----GATGAGACGGAAA-GAGAACGAAAGAAAAAG-----TGT-CAT--AATGCTAATCTATGTGACAGGCTTCT Epichloe_sylvatica_200748 GAGTTCAT--------TCTCTCTGTTTGTC------TTGGGGA----------------CCCCCT-CCTCGACGCGTTCC-GGTGTTGAGCCCCTGATTTCGT-ACCCC-----GCCGAGC----CCGGCCACGACGT-GCACGCCCAACGGAC-AGTAGTGATGAGAGGCGGACCGAGAC-----AACATTAAT--GAATGCGG---------TATTCGAAAAC------CG-TAGCTGACC---TT-TTTCT----------T--------TCCCTC-----TAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGAC-AAATC-CGCCGACCTCGAACGAC-AGGCACAAATA--ACATG-AAAAACT----CACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCGGAGCTCCAGCTCGAGCGCATGAGTGTCTACTTCAACGAGGCAAGTCTTCATAATCT---AAA--GTCTC----CATTGA---GC----TACATACCGCC---CTGGA----GATGGGACGGAAA-AAGAAGGAAAGAAAAAG-----TGT-TATC--ATGCTAATCTATGTGACAGGCTTCT Epichloe_sylvatica_200751 GAGTTCAA--------CCTCTCTGTTTGTC------TTGGGGA----------------CCCCCT-CCTCGACGCGTTCC-GGTGTTGAGCCCCTGATTTCGT-ACCCC-----GCCGAGC----CCGGCCACGACGT-GCACGCCCAACGGACAAGTCATGATGAGAGGCGGACCGAGAC-----AACATTAAT--GAATGCGG---------TATTCGAAAAC------CG-TAGCTGACC---TT-TTTCT----------T--------TCCCTC-----TAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGAC-AAATC-CGCCGACCTCGAACGAC-AGGCACAAATA--ACATG-AAAAACT----CACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTCTTCATAATCT---AAA--GTCTC----CATTGA---GC----TACATACCGCC---CTGGA----GATGGGACGGAAA-AAGAAGGAAAGAAAAAG-----TGT-TATC--ATGCTAATCTATGTGACAGGCTTCT Epichloe_typhina_200736 GAGTTCAA--------CCTCTCTGTTTGTC------TTGGGGA----------------CCCCCT-CCTCGACGCGTTCC-CGTGTTGAGCCCCTGATTTCGT-ACCCC-----GCCGAGC----CCGGCCACGACGT-GCACGCCCAACGGACAAGTCGTGATGAGAGGCGGACCGAGAC-----AACATTGAT--GAATGCGG---------TATTCGAAAAC------CG-TAGCTGACC--TTT-TTTCT----------T--------TGCCTC-----TAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGAC-AAATC-CGCCGACCTCGAACGAC-AGGCACAAATA--ACATG-AAAAACT----CACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTCTTCATAATCTACAAAA--GTCTC----CATTGA---GC----TACATACTGCC---CTGGA----GATGGGGCGGGAG-AAGATGGAAAGGAAAAG-----TGT-TATC--ATGCTAATCTATGTGACAGGCTTCT Epichloe_typhina_200737 GAGTTCAA--------CCTCTCTGTTTGTC------TTGGGGA----------------CCCCCT-CCTCGACGCGTTCC-GGTGTTGAGCCCCTGATTTCGT-ACCCC-----GCCGAGC----CCGGCCACGACGT-GCACGCCCAACGGACAAGTCGTGATGAGAGGCGGACCGAGAC-----AACATTGAT--GAACGCGG---------TATTCGAAAAC------CG-TAGCTGA-C--TTT-TTTAT----------T--------TCCCTC-----TAGGTTCATCTTCAAACCGGCCAGTGCGTAAGTGAC-AAATC-CGCCGACCTCGAACGACAAGGCACAGATA--ACATG-AAAAACT----CACATTGACTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTCTTCATAATCTAAAAAA--GTCTC----CATTGA---GC----TACATACCGCC---CTGGA----GATGGGACGGGAA-AAGAAGCGAAGAAAAAG-----TAT-TATC--ATGCTAATCTATGTGACAGGCTTCT Epichloe_typhina_200739 GAGTTCAA--------CCTCTCTGTTTGTC------TTGGGGA----------------CCCCCT-CCTCGACGCGTTCC-GGTGTTGAGCCCCTGATTTCGT-ACCCC-----GCCGAGC----CCGGCCACGACGT-GCACGCCCAACGGACAAGTCATGATGAGAGGCGGACCGAGAC-----AACATTAAT--GAATGCGG---------TATTCGAAAAC------CG-TAGCTGACC---TT-TTTCT----------T--------TCCCTC-----TAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGAC-AAATC-CGCCGACCTCGAACGAC-AGGCACAAATA--ACATG-AAAAACT----CACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTCTTCATAATCT---AAA--GTCTC----CATTGA---GC----TACATACCGCC---CTGGA----GATGGGACGGAAA-AAGAGGGAAAGAAAAAG-----TGT-TATC--ATGCTAATCTATGTGACAGGCTTCT Epichloe_typhina_200849 GAGTTCAA--------CCTCTCTGTTTGTC------TTGGGGA----------------CCC----CCTCGACGCGTTCC-CGTGTTGAGCCCCTGATTTCGT-ACCCC-----GCCGAGC----CCGGCCACGACGT-GCACGCCCAACGGACAAGTCGTGATGAGAGGCGGACCGAGAC-----AACATTGAT--GAATGCTG---------TATTCGAAAAC------CG-TAGCTGACC--TTT-TTTCT----------T--------TGCCTC-----TAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGAC-AAATC-CGCCGACCTCGAACGAC-AGGCACAAATA--ACATGAAAAAACT----CACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTCTTCATAATCTAAAAAA--GTCTC----CATTGA---GC----TACATACCGCC---CTGGA----GATGGGACGGGAA-AAGAAGCGAAGAAAAAG-----TAT-TATC--ATGCTAATCTATGTGACAGGCTTCT Epichloe_typhina_200851 GAGTCCAA--------CCTCTCTGTTTGTC------TTGGGGA----------------CCCCCT-CCTCGACGCGTTCC-CGTGTTGAGCCCCTGATTTCGT-ACCCCGCCGAGCCGAGC----CCGGCCACGACGT-GCACGCCCAACGGACAAGTCGTGATGAGAGGCGGGCCGAGAC-----AACATTGAT--GAATGCTG---------TATTCGAAAAC------CG-TAGCTGACCTTTTT-TTTCT----------T--------TGCCTC-----TAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGAC-AAATC-CGCCGACCTCGAACGAC-AGGCACAAATA--ACATG-AAAAACT----CACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGTCTTCATAATCTAAAAAA--GTCTC----CATTGA---GC----TACATACCGCC---CTGGA----GATTGGACAGGAA-AAGATGGAAAGAAAAAG-----TGC-CATC--ATGCTAATCTATGTGACAGGCTTCT Epichloe_typhina_201667 GAGTTCAA--------CCTCTCTGTTTGTC------TTGGGGA----------------CCCCCT-CCTCGACGCGTTCC-GGTGTCGAGCCCCTGATTTCGT-ACCCC-----GCCGAGC----CCGGCCACGACGT-GCACGCCCAACGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AACATCATT--GAATGCGG---------TATTCGAGAAC------TG-TAGCTGACC---TT-TTTCT----------T--------TCCCTC-----TAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGAC-AAATC-TGCCGACCTCGAACGAC-AGGCACAAATA--ACATG-AAAAACT----CACATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGC-------------------AA--GTCTC----CATTGA---GC----TACATACCGCC---CTGGA----GATGGGACGGAAA-AAGAAGGAAAGAAAAAG-----TGT-TATC--ATGCTAATCTATGTGACAGGCTTCT ; END; BEGIN TREES; TITLE Tb5122; LINK TAXA = Taxa1; TRANSLATE 1 Epichloe_clarkii_200741, 2 Epichloe_clarkii_90168, 3 Epichloe_typhina_200736, 4 Epichloe_typhina_200851, 5 Epichloe_typhina_200849, 6 Epichloe_typhina_200737, 7 Epichloe_sylvatica_200748, 8 Epichloe_sylvatica_200751, 9 Epichloe_typhina_200739, 10 Epichloe_typhina_201667, 11 Epichloe_festucae_90661, 12 Epichloe_festucae_201550, 13 Epichloe_baconii_200745, 14 Epichloe_baconii_90167, 15 Epichloe_amarillans_200743, 16 Epichloe_amarillans_201670, 17 Epichloe_amarillans_90815, 18 Epichloe_glyceriae_200755, 19 Epichloe_glyceriae_200747, 20 Epichloe_elymi_201555, 21 Epichloe_elymi_201553, 22 Epichloe_bromicola_200750, 23 Epichloe_bromicola_201558, 24 Epichloe_brachyelytrum_200752, 25 Epichloe_brachyelytrum_201561, 26 Claviceps_fusiformis_26245, 27 Claviceps_purpurea_20102, 28 Echinodothis_tuberiformis; TREE Fig._8nj = [&R] (((((((((1,2),3),4),(5,6)),(8,9)),7),10),(((((11,12),(13,14)),((15,16),17)),((18,19),((20,21),(22,23)))),(24,25)))Epichloe,((26,27)Claviceps,28)); END; BEGIN TREES; TITLE Tb5123; LINK TAXA = Taxa1; TRANSLATE 1 Epichloe_clarkii_200741, 2 Epichloe_clarkii_90168, 3 Epichloe_typhina_200736, 4 Epichloe_typhina_200851, 5 Epichloe_typhina_200849, 6 Epichloe_typhina_200737, 7 Epichloe_sylvatica_200748, 8 Epichloe_sylvatica_200751, 9 Epichloe_typhina_200739, 10 Epichloe_typhina_201667, 11 Epichloe_festucae_90661, 12 Epichloe_festucae_201550, 13 Epichloe_baconii_200745, 14 Epichloe_baconii_90167, 15 Epichloe_amarillans_200743, 16 Epichloe_amarillans_201670, 17 Epichloe_amarillans_90815, 18 Epichloe_glyceriae_200755, 19 Epichloe_glyceriae_200747, 20 Epichloe_elymi_201555, 21 Epichloe_elymi_201553, 22 Epichloe_bromicola_200750, 23 Epichloe_bromicola_201558, 24 Epichloe_brachyelytrum_200752, 25 Epichloe_brachyelytrum_201561, 26 Claviceps_fusiformis_26245, 27 Claviceps_purpurea_20102, 28 Echinodothis_tuberiformis; TREE Fig._8p = [&R] (((((((1,2)Epichloe_clarkii,3),4),(5,6)),7,(8,9)),10),(((((11,12)Epichloe_festucae,(13,14)Epichloe_baconii),((15,16),17)Epichloe_amarillans),((18,19)Epichloe_glyceriae,((20,21)Epichloe_elymi,(22,23)Epichloe_bromicola))),(24,25)Epichloe_brachyelytrum))Epichloe; END;