#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 20, 2024; 11:52 GMT TreeBASE (cc) 1994-2008 Study reference: Hedges S., Moberg K., & Maxson L. 1990. Tetrapod phylogeny inferred from 18s and 28s ribosomal RNA sequences and a review of the evidence for amniote relationships. Molecular Biology and Evolution, 7(6): 607-633. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S362] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=42; TAXLABELS Acomys_cahirinus Alligator_mississippiensis Anas_platyrhynchos Anser_anser Balaenoptera_borealis Balaenoptera_physalus Batrachoididae Bos_taurus Camelus_dromedarius Canis_familiaris Capra_hircus Cavia_porcellus Chinchilla_brevicaudata Crotalus_atrox Cyprinus_carpio Elephas_maximus Equus_caballus Felis_silvestris_catus Gadus_callarias Gallus_gallus Goosefish_lophinus Homo_sapiens Hydrolagus_colliei Hystrix_cristata Lepisosteus_spatula Macaca Meleagris_gallopavo Mesocricetus_auratus Mus_musculus Myocastor_coypus Myoxocephalus Myxine_glutinosa Oncorhynchus Oryctolagus_cuniculus Ovis_aires Physeter_catodon Platichthys_flesus Proechimys_guairae Saimiri_sciureus Struthio_camelus Sus_scrofa Thunnus_thynnus ; END; BEGIN TAXA; TITLE Taxa2; DIMENSIONS NTAX=27; TAXLABELS Alligator_mississippiensis Ambystoma_mexicanum Amphiuma_tridactylum Bufo_valliceps Discoglossus_pictus Eleutherodactylus_cuneatus Gallus_gallus Gastrophryne_carolinensis Grandisonia_alternans Heterodon_platyrhinos Homo_sapiens Hyla_cinerea Hypogeophis_rostratus Ichthyophis_bannanicus Latimeria_chalumnae Mus_musculus Nesomantis_thomasseti Oryctolagus_cuniculus Plethodon_yonhalossee Rattus_norvegicus Scaphiopus_holbrooki Sceloporus_undulatus Siren_intermedia Trachemys_scripta Turdus_migratorius Typhlonectes_natans Xenopus_laevis ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2017] TITLE Fig._A1; LINK TAXA = Taxa2; DIMENSIONS NCHAR=1949; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=- GAP= #; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800 1810 1820 1830 1840 1850 1860 1870 1880 1890 1900 1910 1920 1930 1940 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Alligator_mississippiensis --CCTGGTTGATCCTGCCAGTAGCATA-GCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACACACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTT--GTCGCTCCAACCGT---TACTTGGATAACTGTGGT--TTCTA-AGCTAATACATGCCGACGAGCGCTGACCT-C-----------GGGGAT-CGTG-ATTTATCAGACCAAAACCAACGGGCTCGCCCGGCC----------------------------------------------------------------------------------------------GCT-TGGTGACTCTAGATAACC-CGGGCCGATCGCA-GC-CC-CGTGGCGGCGACGACGCATTCGAATGTCT-CCCTATCAACTTTC-ATGGTACTTTCTGTGCCTACCATGGTGACC-CGGGTA-CGGGGA-TCA-GGTTCGATTC-GG-GAGGGA-CCTGAGAAACGGCTACCACATCC-AGGA-GGCAGCA-GCGCG---ATTACCCACTCCCGAC--GGGGA--TAGT-AC-AAAAATAACAATACAGGACTCT---GAGGCCCTGT-ATTGGAATGAGTACACTTTAAATCCTTTAACGAGGA-C-ATTGGAGGGC-AG------------------------------------------------------------------GC-CG-AG---GA-C-TG----------GGATCGAGC--G--GTCCGCCGCGAG-CGACGTACCGCC-GTCCC--GCCCCC-G--TCTCGGCGC-CCCTTGATGCTCTT-AC--AGTGTCCTG--GG-GTCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGG--TCGCCGGAATACTCCAGCTAGGAATAATGGAATAGGACTCCGGTTCTATTTTGTTGGTTTTCGGAACTGGGGCCATGATTAAGAGGGACGC-C-GG--CATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGAACCAAAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAA-GAAAGTCGG--GTTCGAAGACGATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTAGCGATCCGGCGGCGTTATT----T-A-CCGCC--GCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCG-GGGGAGTATGGTTGCAAAGCT-AAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGCA-----GGCTTTATTT-----AACACGGGAAACCTCACCCGGCC-GGACACGGAAAGGA--GACAGATTGATAGCTCTTTCTCGATTCTGTGGGT----GTGCATGGCTGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCT-GGCATGCTAACTAGTTATGCGACCCCC-AGC-GTCGGC-TCC---AA-T-C-TAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAATAACA-GTCTGT-ATGCCCTTA-ATGTCCGGGGCTGCA-GCGCGCTACACTGA-CTGGCTCAGCGTGTGTCTACCCTACGCCGACAGGTGCGGGTAACCCGTTGAACCCCATTCGTGA-GGGGA-CGGG-ATTGCAATTATTCCCCA--A-CG-GGAATTCCCAGTAAGTGCGGGTCATAAGCTCGCGTTGATT--G-CCCT-C---TTGT-C-CACCG----TCGCTACTACCGATTGGATGGTTTAGTGAGGTCCTCGGAT-GGCC--GCCGGG-T-GG----CGGCCCT------GCGCCGAGAAGACGGTCGAACT--ACTATCTAGAGGAAGC------------------------------------------------ Ambystoma_mexicanum ----TGGTTGATCCTGCCAGTAGCA---GCTTGTCTC-AAGATTAAGCCATGC-CGTGTAAGTACACACGGCCGGTAC-GTGAAACTGCGAATGGCT--TTAAATC-CTTATGGT--CTTT-ATCGCTCCATCTGT---TACTTGGATAACTGTGGT-ATTCTAGAGCTAATACATGCCGACGAGCGCTGACCTCC-----------CGGGATGCGTGCATTTATCAGACCAAGACCAATGGGCTCGCCCGGCC----------------------------------------------------------------------------------------------GC---GGTGACTCTAGATAACCTCGGGCCGATCGCA-GTCCCCCGTGACGGCGACGATGCATTCGGATGTCTGCCCTATCAACTTTCGATGGTACTTTCTGTGCCTACCATGGTGACCACGGGT--CGGGGAATCAGGGTTCGA-T-CGGAGAGGGAGCCTGAG-A-CGGCT-CCACAT-CAAGGATGGCAGCAGGCG-G---ATTACCCACTCCCGAC--GGGGA--TAGTTA--AAAAATAACAATACAGGACTCTTTCGAGGCCCTGT-ATTGGAATGAGTAC-CTTT-AATCCTTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCTAGCAGC-GCGG---TTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGT-AAAAAGCTCGTAG---GATCTTG----------GGATCGAGCTGG--GTCCGCCGCGAGGCGACG-ACCGCCTGTCCCA-GCCCCC-G--TCTCGGCGCCCCCTTGATGCTCTTGACTGAGTGTCCTG--GG--CCCGAA-----TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGG--TCGCCTGAATACTTCAGCTAGGAATAATGGAATAGGACTCCGGTTCTATTTTGTTGGTTTTCGGAACTGGGGCCATGATT--G-GGG-CG-C-GGGGGCATTCGTATTGTTCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGAACCAAAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTAGCGATCCGGCGGCGTTATTCCCATGACCCGCCGAGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGGGGAGTAGGGT------------------------------------------------------------------------AACACGGGAAACCTCACCCGGCCCGGACACGGAAAGGA--GACAGATTGATAGCTCTTTCTCGATTCTGTGGGT----GTGCATGGCTGTTCTTAGTTGGTGGAGC-ATTTGTCTGGTTAATTCCGATAACGAA-GAGACT-C-TCCATGCTAACTAGTTACGCGACCCCCA-GCGGTCGGCGTCC---AACTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGAGAT-GAGCAATAACA-GTCTGT-ATGCCCTTAGATGTCC----CTGCACGCGCGCTACACTGA-ACGGATCAGCGTGTGTCTACCCTTCGCCGACAGGT-CGGGTAACCCGCT-AACCCCGTTCGTGATAGGGATTGGGGATTGCAATTATTTCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCGCGTTGATT--GTCCCT-CCC-TTGTAC-CAC------TCGCTACTACCGATTGGATGGTTTAGTGAGGTCCTCGGATCGGCCCCGCCGGGGTCGG-CATCGGCC-------AGTGCCGAGAAGACGATCAAACT-GACTATCTAGAGGAAG------------------------------------------------- Amphiuma_tridactylum --CCT-GTTGATCCTGCCAG-AGCA---GCTTGTCTCAAAGATTAAGCCATGCACGTGTAAGTACACACGGCCGGTACAGTGAAACTGCGAA--------TAAATCAGTTAT----------ATCGCTCCATCT-T---TACTTGGATAACTGT-GTTATTCTT-AGCTAATACATGCCGACGAGCGCTGACCTCC-----------CGGGATG-GTGCATTTATC-GACCAAAACCAATGGGCTCGCC---CC----------------------------------------------------------------------------------------------GC---GGT-ACTCTAGATAACCTCGGGC-GATCGCA-G-C-CCCGTGACGGCGACGA------------------------------------------------------------------------------------------CGGAGAGGGAGCCT-AG-AACGGCT-CCACAT-CAAGG--GGCAGCAGGCGC----ATTACCCACTCC-GACCCGGGGA--TA-T-A--AAAAATAACAATACAGGACTCTTTCGAGGCCCTGT-ATTGGAATGAGTACACTTT-AA-CCTTTAACGAGGATCCATTGGAGGGCAAGTCT-GTGCC-GCAGCCGCGG--ATTCCAGCTCCAAT-G-GTATATT-AAGTTGCT-CAGTT--AAAGCTCGTAGTT-GATCTTG----------GGATCGAGCT----GTCCGCCGCGAGGCGACG--CCGC--GTCCCA-GCCCC--G--TCTCGGCGCCCCCTCGATGCTCTTGACTGAGTGTCTTG--GG---CCGAAG----TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGG--TCGCCTGAATACTTCAGCTAGGAATAATGGAATAGGACTCCGGTTCT-TTTTGTT-GTTTTCGGAACTGGGGCCATGATTAAGAGGGAGGGACG-------TCGTATTGTGCCGCTAGAGGT-AAATTCTT-GACCGGCGCAAGACGAACCAAAGCGAAAGCATTTGCCAAGAAT-T--TCATTAATCAAGAATGAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGT-GTTCCGACCATAAACGATGCCGACT-GCGATCCGGCGGCGTT-TTCCCATGACCCGCTT-GCAGCTTCCGGGAAACCAAAGTCTTTGG---CCGGGGGGAGTATGGTTGCAAAGCT-AAACTT--------------------------------------------------------AACACGGGAAACCTT-CCCG-CCCGGAC-CGGAAAGGA---AC-GATTGATAGCTCTTTCTCGATTCTGTGGGTT-TTTTGC-TGGCT-TTCTT-GTTGGTGGAG--ATTTGTCT-GTT-ATTCCGATAACGA-TGAGACTTC-TCCATGCT-ACTAGTTACGCGACCCCCA-GC-GTCGG--T-----T--TT-TTAGAGGGACTAGTGGCGTTCAGCC-CACGAGATCGAGCAATAACA-GTCTGT-ATGCCCT-AGATGTCC----CT-CACGCGCGCT-CACT-A-ACGGATCAGCGT-TGTCTACCCTTCGCCGACAGG---GGG--ACCC-CT-AACCCC-TT-GT-ATAGGGATCGGGGATTGCAATTATTTCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGC-GCTGTT-A----GTCCC--CC-TTTGTACACAC------TCGCT-CTACCGATTGGAT-GTTTAGT-AGGT-CT-G-AGTTGGCC---TGGGGTTGG--AT-GC-TT-----GCGTCCGTAGAAGACGATCAAACT--ACTATCTAGAGGAAG------------------------------------------------- Bufo_valliceps ---------------------------------------------AGCCATGCACGTGTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGC--------------------------ATCGCTCCAACCGT---TACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGAGCGCTGACCCCC-----------AGGGATGCGTGCATTTATCAGACCAAAACCAATCGGGG---GGGCGC-CGGG-C--GG--T-GGGGGTGGTCT-GGCCTCCC--C-CAGCC-C--C-GCTCTCCC--G-C-------------------------------GCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGTC-CCCGTGACGGCGACGATCCATTCGGATGTCTGCCCTATCAACTTTCGATGGTACTTTCTGCGCCTACCATGGTGACCACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGA-GGCAGCAGGCGC-CA-ATTACCCACTCCCGAC-CGGGGAG-TAGTGACGAAAAATAACAATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTACACTTTAAATCCTTTAACGAGGA-CTATTGGAGGGC-AGTCTGG----------------------------------GTATATTAAAGTTGCTGCAGTT--AAAGCTCGTAG---GATCTTG----------GGATCGAGCT-G--GTCCGCCGCGAGGCGAC---CCGCC-GTCCCA-GCCCCC-G--TCTCGGCGCCTCCC--ATGCTCTTGACTGAGTGTCCCG--GGG-CCCGAA-----TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGGG-TCGCCTGAATACTTCAGCTAGGAATAATGGAATAGGACTCCGGTTCTATTTTGTTGGTTTTCGGAACTGGGGCCATGATTAAGAGGGACG---------ATCCGTATTGCGCCGCTAGAGGT-AAATTCTTGGACCGGCGC-AGACGAACCAAAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAG-A-GAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGG--ATCCGG-GG--TTATTCCCATGACCCGCCGAGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGCAG--GCGGCTT-ATTT-----AACACGGGAAACCTCACCCGGCCCGGACACGGAAAGGAT-GACAGATTGATAGCTCTTTCTCGATTCTGTGGG------TGCATGGC----CTTAGTTGGTGGAGC-ATTTGTCT-GTT-ATTCCGATAACGAATGAGACT-C-TCCATGCT-ACTAGTTACGCGACCCC-------TCCGCGTCC---AACTTCTTAGAGGGACAAGTGG-GTTCAGCCACGCGAGATCGAGCAATAACAAGTCTGTGATGCCCTTAGATGTCC----CTTCAC--GCGCT-CACT-A-ACGGACCAGCGTGTGTCTACCCTTCGCCGACAGGTCGGGGT-ACCCGCTGAACCCCGTTCGTGATAGGGATCGGGGATTGCAATTATTTCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCGCGTTGATT--GTCCCT-CCCTTTGTACACACCGC---TCGCTACTACCGATTGGATGGTTTAGTGAGGTCCTCGGATCGGCCCCGCCGGGG-CGG-CGACGGCCC----G-AGCGCCGAGAAGACGATCAAACT--ACTATCTAGAGGAAG------------------------------------------------- Discoglossus_pictus ----TGGTTGATCCTGCCAGTAGCATA--C-TGTCTCAAAGATTAAG-CATGCACGTGTAAGTACACACGGCCGGTACAGTGAAACTGCGAATGGCT----AAATCAGTTATGGT--CT---ATCGCTCCATCTGT---TACTTGGATAACTGTGGT-ATTCT-GAGCTAATACATGCCGACGAGCGCTGACCC--------------GG-ATGCGTGCATTTATCAGACCAAAACCAATGGGCACTCGTGCC--G-C------------------------------------------------------------------------------------------GCTTTGGT-ACTCTAGATAACCTCGGGC-GATCGCACGTC-CCCGTGACGGCGACGATACATT--------------------------------------------------------------------------------------------------------------------------------------------ATT-CC--CTCC-G-CT-GGG-------T-AT-AAAAATAACAATACAGGACTCTTTCGAGGCCCT-TTATTGGAATGAGTACACTTT----CCTTTAACGAGGATCTATTGGA-TGCAAGTC-------------------------------------GTATATT-AAGTTGCTGCAGT---AAAGC--GTAGT--GATCTTG----------GGATCGAGCT----GTCCGCCGC-AGG-GACG--CCGC--GTCCCA-GCCCCC-G--TCTCGGCGCCTCCCC-ATGCTCTTGACTGAGTGTCCCG--GG---CCGAAG----TACTTTGAAAAAATTA-A-TGTTCAAAGCAGGCC-G--TCGCCTGAATAC-TCAGCTAGGAATAATGGAATA-GACTCCGGTTCT-TTTTGT-GGTTTTCGGAACTGGGG---TGATTAAGAGGGACG-CC-------TTCGTATTGTGCCGCTAGAGGT-AAATTCTTGGACCGGCGCAAGACGAACCAAAGCGAAAGCATTTGCCAAGAAT-TTTTCATTAATCAAGAA-GAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTAGCGATCCGGCGG-GTTATTCCCATGACCCGC--AGCAGCTTCCGGGAAACCAAAGTCTTTGGG-TCCGGGGGGAGTATGGT------------------------------------------------------------------------AACAC-GGAAACCT-ACCCGGCCCGGACACGGAAAGGA--GACAGATTGATAGCTCTTTCTCGATTCTGTGGGT-----TGCATGGC--TTCTTAGTTGGTGGAG--ATTTGTCTGGTTAATTCCGATAACGA-TGAGACT-C-TCCATGCTAACTAGTTACGCGACCCCCA-GCGGTCGGCGT-C---AAC---TTAGAGGGACAAG-GGCGTTCAGCCACACGAGAT-GAGCAATAACA-GTCTGTGATGCCCTTAGATGTCC----CTGCACGCGCGCTACACTGA-ACGGATCAGCGTGTGTCTACCCTTCGC-GACAGG---GGG-AACCCGCTGAACCC-GT-C--GAAAGGGAAAGGGGA--GCAATTATTTCCCAT-AACGAGGAATTCCCAGTAAGTGCGGG-CATAAGCT-GCGTTGAT---GTCCCT-CCCTTTGTAC-CACTT----T-GCT-CTACCGATTGGATGGTTTAGTGAGGTCCTCGGGGT-GGGCCCCCGGGGTCGG-C-ACGGCCCT------GCGCCGAGAAGACGATCAAACT------------------------------------------------------------------ Eleutherodactylus_cuneatus --CCTGGTTGATCCTGCCAGTAGCA---GCTTGTCTCAAAGATTAAGCCATGCACGTGTAAGTACACACGGCCGGTACAGTGAAACTGCGAATGGC----TAAATCAGTTATGG---CTT--ATCGCTCCAACCG-----AC-----------------------------------------------------------------AGGGATG-GTGCATTTAT-AGACCAAAACC--T-GGGT-T-GC-----GGGGC--AAGGG-----G-T-CTCCCCGGGA---G-GCCCGG---G--GG-CCG-----CC----G---------------------------GCCTTGGCGACTCTAGATAACCTCGGGC--ATCGCACGTC-CCCGTGACGGCGACGATCCATTCGGACGTCTGCCCTATCAACTTTCGATGGTACTTTCTGCGCCTACCATGGTGACCACGGG--ACGGGGAATCAGGG-T-GAT--CGGAGAG-GAGCCTGAGAAACGGCT-CCACAT-CAAGGA-GGCAGCAGGCGCGC--ATTACCCACTCC-GACG-GGGGA--TAGTGA--AAAAATAACAATACAGGACTCTTTCGAGGCCCTGT-ATTGGAATGAGCACACTTTAAA-CCTTTCACGAGGA-CC-TTGGAGG-C-AGTCT------A--AG--G-GG---TTCCAGCTCCAA----GTATATTAAAGTTGC-GCAGTT--AAAGCT-GTAG---GATCTTG----------GGATTGAGCT-C--GTC-GCCGAAAGGCGACG--CCGC--GTCCCA-GCC-------TCTCGGCGCC-CTCCGATGCTCTTGACTGAGTGTCCCGTGCGGGCCC-AAG----TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC------GCCTGAATACTTCAGCTAGGAATAATGGAATAGGACTCCGGTTCT-TTTTGTT-GTTTTCGGAACTGGGGCCATGATTAAGAGGG--------------TCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGAACCAAAGCGAAAGCATTTGCCAAGAAT-TTTTCATTAATCAAGAA-GAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTAGCGATCCGGCGGCGTTTTTCCCATGACCCGCCGG-CAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCT-AAACTTAA------------------------------------------------------AACACGGGAAACCTCACCCGGCCCGGACACGGAAAGGATT-ACAGATTGATA-------------------------------------------GTTGGTGGAG---TTTGTCT-GTT-ATTCCGATAACGAT-GAGACT-C-CC-ATGCT-ACTT-T--CGCGACCCCC------TCC-CGTCC----GCT--TTA--GGGACAA----CGTTCAGCCACGCGAGATCGAGCAATAACA-GTCTGT-ATGCCCTTAGATGTCC----CTGCACGCGCGCT-CACTGA-ACGGACCAGCGTGTGTCTACCCTTCGCCGACAGGTCCGGG--ACCCGCT-AACCCCGTT-GTGATAGGGA--GGGGATTGCAATTATTTCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCT-G--TTGATT--GTCCCT-C--TTTGTACACAC------TCGCTACTACCGATTGGATGGTT-AGTGAGGT-CTCGGAT-GGCCCCC--GGGGT-GC-C--CGGCCCT-----AGCGCCGAGAAGACGATCAAACT--ACTATC---------------------------------------------------------- Gallus_gallus --CC-GGTTGATCCTGCCAGTAGCA---GCT-GTCTCAAAGATTAAGCCATGCATGTCTAAGTACACACGGGCGGTACAGTGAAACTGCGAATGGC-----AAATCAGTTATGG---------TCGCTCCCCTCCC----ACTTGGATAACTGT-G----TCT-GAGCTAAT-CATGCCGACGAGCGCCGACCTCC-----------GGG-ACG-G--CATTTATCAGACCAAAACCAACGG-C-CGCCC--------------------------------------------------------------------------------------------------G---TGG--ACTCTAGATAACCTCGAGCCGATCGCA-GC-CCC--TGGCGGCGACGACCCATT--AATGTC--CCCTATCAACTT-CGATGGTACTGTCTGTGCCTACCATGGTG---ACGGGTAACGGG-AATCAGGGTTCGAT--CGGAGAGGGAGCCTGAGAAACGGCT-CCACATCCAAGGA-GGCAGCAGGCGCGC--ATTACCCACTCCCGACCCGGGGA--T-GT-AC-AAAAATAACAATACAGGACTCTTTCGAGGCCCT-T-ATTGGAATGAGTCCACTTTAAAT--TTTAA-GAGGA-CCATTGGAGGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTGAAAAAATTAGAGTGTTCAAAGCA--------CCGCCGGAAT-CTCCAGCTAGGAATAA-GGAATAGGACTCC-GTTC--TTTTGTT-G-TTTCGGAAACGGGGCCATGATTAAGAGGGACGGC-GGGGG-ATTCGTATTGTGCCGCTAGAGGT-AAATTCTTGGACCGGCGCAAGACGAACTAAAGCGAAAGCATTTGCCAAGAATGT--TCATTAATCAAGAA-GAAAGTCGGAGGTTCGAAGACGATCAGATACCGT-GTAGTTCCGACCATAAACGATGCCGAC-AGCGATCCGG--G----ATTCCCAT-ACCCGC-----AGCTCCCGGGAAACCCAAG-----GGG-------------------------------------------------------------------------------------------ACACGGGAAACCT-ACCCG-CC-GGACACGGACAGGAT--ACAGATTGAGAGCTCTTTCTCGATTCCGTGGGT--T---GCATGGC----CTTAGTTGGTGGAGC--TTTGTCT-GTT-ATTCCGATAACGA--GAGACTCT-GGCATGCT-ACTAGTTACGCGACCC--GAGC-GTCGG--TCC---A----CGTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAATAACA-GTCTGTGATGCCCTTAGATGTCCG---CTGCACGCG--CT-CACTGA-CTGGCTCAGCTTGTGTCTACCCT--GCCGG-AGGCGCGGG--ACCCGTTGAACCCCATTCGTGATGGGGATCGGG-ATTGCAATTATTCCC-ATGAACGAGGAATTCCCAGTAAGTGCGGGT-ATAAGCT-GCGTTGATT--GTCCCT-C---TTGTACACAC-G----TTGCTACTACCGATTGGATGGTTTAGTGAGGT-CTTGGAT-GGC-CTGG-GGGGT-G---C--GGC--TG-----G-G--GAGGAGA-GGTCGA--T--ACTATCTAGAGGAAG------------------------------------------------- Gastrophryne_carolinensis ---CTGGTTGATCCTGCCAGTAGC----GCTTGTCTCAAAGATTAAGCCATGC-CGTGTAAGTACACACGGAC-GTACAGTGAAACTGCGAATGGC---TTAAATCAGTTATGG---CTT--ATCGCTCCCAT---T--TACTTGGATAACTGTGGTAATTCT-GAGCT-ATACATGCCGA-GAGCGCTGACCCCC-----------AGG-ATGCGTGCATTTATCAGACCAAAACCAATCGGGGGC-C--G-GTC---G-CCC----CCC--G----------------------------------------------------------------------------TTTGGCGACTCTAGATAACCTCGGGC-GATCGCA-GTC-CCCGTGACGGCGACGATACTTTCGGATGTCTGCCCTATC-ACTTTC-AT-GTTCTTTCT-CGC-TACCAT-GTGACCACGGGT-A-GGG--ATCAGG--T---T--CGGAGA--GAGCCT-AG-AACGGCT-CCACAT-CAAGG--GGCAGCAGGCGC-C--ATTACCCACTCC-GACT-GGG-A----GT-A--AAAAATAACAATACAGGACTCTTTCGAGGCCCTGT-ATTGGAATGAGTACACTTT-A--CCTTTAACGAGGACCCATTGGAGGGCAAGTCT-GTGCC-GCAGCCGCGG--ATTCCAGCTCCAATA--GTATATTAAAGTTGCTGCAGTT--AAAGCTCGTAGTT-GATCTTG----------GGAT-GAGCT----GTCCGCCGCGAGGCGACG--CCGC--GTCCCA-GCCCCC----TCTCGG--CCTCCCC-ATGCTCTT-----AGTGTCCCG--GGGGCCCGAAG-G--TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGG--TCGCC-GAATACTT--GCT-GGAATA-TGGAATAGGACTCCGGT-CT-TTTTGTT-GTTTTCGGAACTGGGG--AT-ATT-AGAGGGAC-------------CGTATTGTGCCGCTAGAGGT-AAATTCTTGGACCGGCGCAAGACGAACCAAAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAA-GAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGT-GTTCCGACCATAAACGATGCCGAC-AGCGATCCGGCGG--TTTTTCCCATGACCCGCC-AGCAGCTT-CGGGAAACCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCT-AAACTTAAAGGAA----------------------------------------------------ACGGGAAACCTCACCCGGCCCGGACACGGAAAGGA---ACAGATTGATAGC------------------------TTGAATGGCTTTTTTT-GTTGGTGGAGCGATTTGTCT-GTTTATTCCGATAACGAT-GAGACTCC-C-CATGCT-A-T--T--CGCGACCCCC----GTCCGCGT------GC---TTAGAGGGACCAAGTGGCGTTCAGCCACACGAGATCGAGCAATAACA-GTCTGTGATGCCCTTAGATGTCCGG--CTGCACGCGCGCT-CACTGA-ACGGACCAGCGTGTGTCTACCCTT-GC-GACAGGT--GGG--ACCCGCT-AA-CCCGTT-GTGATAGGGATCGGGGACTGCAATTATTTCCCATGA-CGAGGAATTCCCAGTAAG-GCGGGTCATAAGCT-GCG-TGATT--GTCCCT-CCC-TTGTACACAC--C---TCGCTACTACCGATTGGATGGTTTAGTGAGGTCCTCGGATCGGCCCCC--GGGG---G-CCACGGCCC-G----AGCGCCGAGAAGACGATCAAACT--A--------------------------------------------------------------- Grandisonia_alternans --CCT-GTT-ATCCT-CCAG-AGCA---GCT-GTCTCAAAGATTAAGCCATGCACGTGTAAGTACACACGGCCGGTACAGTGAAACTGCGA-------------------------------ATCGCTCCATC-CGT--TACTTGGATAACTGTGGT-ATTCT--A-CT-ATACATGCCGACGAGCGCT-ACCTCC-----------CGGGATG-GTGCATTTATCAGACC--AACCAATGGGCTCGCC---CC----------------------------------------------------------------------------------------------GC---GGT-ACTCT-GATAACCTCGGGC--AT-GCACGTC-C--GTGACGGCGACGATACATTCGGATGTC-GCCCTATC-ACTTTCG-TGGT-CTTTCTGCGCCTACCATGGTGAC-ACGGGTAACGGGGAATC-GGGTT--TTT--GGAGAG-GAGCCT-AG-AACGGCT-CCACAT-CAAGG-TGGC-GCAGGCGC----ATTACCC-CTCC-GACT-GGGGA--T--T-AT-AAAAATAACAATACAGG-CTCTTTCGAGGCCCTGTTATTGGAATGAGTACACTTT----CCTTTAACGAGGATCC-TTGGA---CAAGTCT-GTGCC-GCAGC-GCG---ATTCCAGCTCCAAT---GTATATT-AAGTTGCT-CAGTT--AAAGCTCGTAGTT-GATCTTG----------GGATCGAGCT----GTCCGCCGCGAGGCGAC---CCGC--GTCCCA-GCCCC--G--TCTCGGCGCCTCCTTGATGCTCTTGACTGAGTGTCCTG--GGG--CCGAAG----TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC-G--TCGCCT-AATACTTCAGCTAGGAATAATGGAATAGGACTCCGGTTCT-TTTTGTT-GTTTTCGGAACTGGGGCCATGATTAAGAGGGA------------TTCGTATTGTGCCGCTAGAGGT-AAATTCTT-GACCGGCGCAAGACGAACCAAAGCGAAAGCATTTGCCAAGAAT-T--TCATTAATCAAGAA-GAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGT-GTTCCGACCAT-AACGATGCCGACT-GCGATCCGGCGG-GTT-TTCCCATGACCCGC---GCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCT-AAAC----------------------------------------------------------AACACGGG--ACCT--CCCGGCCCGGACACGGAAAGGA---ACAGATTGATA--------------------------TTGCATGGCT-TTCTT-GTTGGTGGAGC--TTTGTCT-GTT-ATTCCGATAACGA-TGAGACT-C-TCCATGCT-ACTAGTTACGCGACCCCCA-GCGGTCGG--T-C---------TTAGAGGGACAA-T----TTCAGCCACACGAGATCGAGCAATAACA-GTCTGT-ATGCCCT-AGATGTCC----CTGCACGCGCGCT-CACT-A-ACGGATCAGCGT-TGTCTACCCTTCGCCGACAGG---GGG--ACCCGCT-AACCCC----GT-ATAGGGATCGGGGATTGCAATT-TTTCCCAT-AACGAGG-ATTCCC-GTAAGTGCGGG-CATAAGCT-GCGTTGA------CCCC-CC--TTGTACACAC------TCGCT-CTACC-ATT-GAT-GTTTAGT-AGGT-CTCGGAT-GGCCCCC--GGGG--GG-CG-CGGCC-T-----CGCGCCGAGAAGA--ATCAAACT--ACTA------------------------------------------------------------ Heterodon_platyrhinos --CCT-GTTGATCCTGCCAG-AGCA---GCT-GTCTCAAAGATTAAGCCATGCATGTCTAAGTACACACGGGCGTGACAGTGAAACTGCGAATGGC----TAAATCAGTTATGG---CT---GTCGCTCCCACCGT---TACTCGGATAACTGTGG----TCTAGAGCTAATACATGCCGACGAGCGCTGACCTCC-----------GGGGATGCGTGCATTTATCAGACCAAAACCAACGGGCT--CCCGGCC----------------------------------------------------------------------------------------------GCT-TGGTGACTCTAGATAACCTCGGGCCGATCGCA-GCCCCCCGTGGCGGCGACGACGCATTCGAACGTCTGCCCTATCAACTTTCGATGGTACTTTCTGTGCCTACCATGGTGACCACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGA-GGCAGCAGGCGCG---ATTACCCACTCCCGAC-CGGGGA--TAGT-AC-AAAAATAACAATACAGGACTCTTTCGAGGCCCT---ATTGGAATGAGTCCACTTTAAATCCTTTAACGAGG--CCATTGGAGGGC-AG-----------------------TT-CAGCTCCAATAGCGTATATTAAAGTTGCTGCAGT--AAAAGCTCGTAG---GATCTTG----------GGA-CGAGCTGG--GTCCGCCGCGAGGCGA-CGACCGC--GTCCCA-GCCCCT-GCCTCTCGGTGCTCCCCCGATGCTCTTAACTGAGTGTCTCG--GG---CCGAAGC---TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGG--TCGCCGGAATACTCCAGCTAGGAATAATGGAATAGGACTCCGGTTCTATTTTGTTGGTTTTCGGAACCGG-GCCATGATTAAGAGGGACG--C-G-----TTCGTATTGTGCCGCTAGAGGT-AAATTCTTGGACCGGCGCAAGACGACCCAGAGCGAAAGCATTTGCCAAGAAT-TTTTCATTAATC-AG-A-GAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTAGCGATCCGGCGG-GTTATTCCCATGACCCGCC-AGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGGGGAG-ATGGT----------AAACTTAAAGGAATTGACGGAAGGGC-CCACCAGGAGTGGCAG--GCGGCTT-AT-------AACACGGGAAACCTCACCCGGCCCGGACACGGAAAGGA---ACAGATCGATAGCTCTTTCTCGATTCTGTGGGT-GT-GTGCATGGC---TCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCT-GGCATGCTAAC-AGTTATGCGACCCCC-AGCGGTCGG--TCC---AA----TTA-AGGGACAAGTGGCGTTCAGCCACCCGAGATT-AGCAATAA-A-GTCTGT-ATGCCCTTAGATGTC-----CTGCACG-GCGCT-CACTGA-CTGGCT-AGCGT-TGTCTACCCTACGCCGACAGGTGCGGGT-ACCTGTTGAACCCCATTCGTGATGGGGATCGGGGATTGCAATTATTCCCTATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCT-GCGTTGATT--GTCCCT-C--TTTGTACACACCT----T-GCTACTACCGATTGGATGGTTTAGTGAGGT-CTTGGAT-GGCCCTG-CGGGGTTGG-CCT-GGCCCT------GCGCCGAGAAGACGGT-GAAC---ACTATCTAGAGGAAG------------------------------------------------- Homo_sapiens TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCC-TTCGCGGG--GGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCCGCGGCG---------------------------------------------------------------GCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTCGCCGTGCCTACCATGGTGACCACGGGTGACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGACCCGGGGAGGTAGTGACGAAAAATAACAATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTG----------GGAGCGGGCGGGCGGTCCGCCGCGAGGCGAGCCACCGCCCGTCCCC-GCCCCTTGCCTCTCGGCGCCCCCTCGATGCTCTTAGCTGAGTGTCCCG-CGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATTCCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTCGATTCCGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCT-GGCATGCTAACTAGTTACGCGACCCCCGAGCGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGA-CTGGCTCAGCGTGTGCCTACCCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGCCT-GGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA Hyla_cinerea --CCTGGTTGATCCTGCCAGTAGCA-A--C-TGTCTCAAAGATTAAGCCATGCACGTGTAAGTACACACGGCCGGTACAGTGAAACTGCGAATGGCT--T-AAATCAGTTAT-----CT---ATCGCTCCAACC------CCTTGGATAACTGT-GT-ATTCT--AGCT-ATACATGCCGACGAGCGCTGACCACC-----------AGGGACGCGTGCATTTATCAGACCAAAACCAATCGGGGGCCCGGG-GCGGCGG-GGCGGAGGGG-GGCTCT-AAAAGCC------C-C---C--GCTCTCCC--G-C----------------------------------GCCTTGGCGACTCTAGATAACCTCGGGCCGATCGCACGTC-CCCGTGACGGCGACGACGCATTCGGATGTCTGCCCTATCAACTTTCGATGGTACTTTCTGCGCCTACCATGGTGACCACGGGTAACGGG-AATC-GGGT-CG-TTCCGGAGAGGGAGCCTGAGAAACGGCT-CCACATCC--G---GG--GC-GGCGCGC--ATT-CC--CTCCCGAC--GGGGA--T-GT-A--AAAAAT-AC-ATACAGGACTCTTTCGAGGCCCTGT-ATTGGAATGAGTACACTTTAAATCCTTTAACGAGG--CTATTGGAGGG-A-GT----------------------TTCCAGCTCCAATA--GTATATTAAA---GTTGCAG-T--AAAGCTCGTAGT--GATCTTG----------GGATCGAGCTGG--GTCCGCCGCGAGGCGAC--ACCGCC-GTCCCA-GCCCCC-G--TCTCGGCGCCCCTCCGATGCTCTTGACTGAGTGTCCCG--GGGGCCCGAAGC---TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGG--TCGCCTGAATACTTCAGCTAGGAATAATGGAATAGGACTCCGGTTCTATTTTGTT-GTTTTCGGAACTGGGG--ATGATTAAGAGGGAC--C--------TTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAAAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTAGCGATCCGGCGGCGTTATTCCCATGACCCGCCGAGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCT---------------------------------------------------------------AACA-GGGAAACCT-ACCCG-CCCGGA-A-GGAAAGGA--GACAGATTGATAGCTCTTTCTCGATTCTGTGGGT----GTGCATGGC----CTTAGTTGGTGGAGCGATTTGTCTGGTT-ATTCCGATAACGAATGAGACT-C-TCCATGCTAACTAGTTACGCGACCCCCG----GTCCGCGTCC---AACTT-T-AGAGGGACAAG-GGCGTT-AGCC-CACGAGATCGAG-AATAACA-GTCTGT-ATGCC-TTAGATGTCC------GCACGCGCGCTACACTGA-ACGGACCAGCGTGTGTCTACCCTTCGCCGACAGGTCGGGG--ACCCGCT-AACCCCGT-CGTGATAGGGATCGGGGATTGC-ATTATTTCCCATGAACGAGG-ATTCCCAGTAAGTGCGGG-CATAAGCTCGCGTTGATT--GTCCCT-CC-TTTGTAC-C-CCGC----CGCTACTACCGATTGGATGGTTTAGTGAGGTCCTCGGATCGGCCCCGGCGGGGTCGG-CGACGGC---GGCGGAGCGCCGAGAAGACGATCAAAC---ACTATCTAGAGGAAGT------------------------------------------------ Hypogeophis_rostratus --------------------------------------------------------------------------------------------------------------------------ATCGCTC-ATCTCGT--TACTTGGATAACTGTGGT-ATTCT-GAGCT-ATACATGCCGACGAGCGCT-ACCTCC-----------CGGGATG-GTGCATTTATCAGACC--AACCAATGGGCTCGCC---C-----------------------------------------------------------------------------------------------GCT--GGT-ACTCTAGATAACCTCGGGCCGATCGCACGTC-CCCGTGACGGCGACGATACA------------------------------------------------------------------------------------------------------------------------------GGC-GCAGGCG--C--ATTACCCACTCC-GACTCGGGGA-----T-A--AAAAATAACAATACAGGACTCTTTCGAGGCCCTG--ATTGGAATGAGTACACTTT----CCTTTAACGAGGAGCCA----A---CAAGTCTGGTGCC--CAGC-------ATTCCAGCTCCAAT---GTATATT-AAGTTGCT-CAGTT--AAA-CT-GTAG---GATCTTG----------GGAT-GAGCT----GTC-GC-GCGAGGCGACG--CCGC--GTCCCA-GCCC---G--TCTCGGCGCCTCCTTGATGCTCTTGACTGAGTGTCCTG--GGGG-CCGAAG----TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC-G--TCGCCTGAATACTTCAGCTAGGAATAATGGAATAGGACTCCGGTTCT-TTTTGTT-GTTTTCGGAACTGGGGCCATGATTAAGAGGG----------------------TGCCGCTAGAGGT---ATTCT--GACCGGCGCAAGACGAACCAAAGCGAAAGCATTTGCCAAGAAT-T--TCATTAATCAAGAA-GAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGT-GTTCCGACCATAAACGATGCCGACTAGCGATCCGGCGGCGTTTTTCCCATGACCCGCC-AGCAGCTTCCGGGAAACCAAAGTCTTTGGG--CCGGGGGGAGTATGGTTGCAAAGCT-AAACTTAA------------------------------------------------------AACACGGG-AACCT--CCCGGCC-GGACACGGAAAGG-----------------------------------------TTGCATGGCT-TT-TT-GTTGGTGGAGCTTTTTGTCT-GTTTATTCCGATAACGA-TGAGACTTC-TCCATGCT-ACTAGTTACGCGACCCCCA-GC-GTCGG--T-------TTT-T-A-AGGGACAAGTGGCGTT-AGCC-CACGAGAT-GAGCAATAACA-GTCTGT-ATGCCCT-A-ATGTC-----CTGCACGCGCGCT-CACTGA-ACGGATCAGCGTGTGTCTACCCTTCGC-GACAGGT--GGGTTACCCGCT-AACCCC-TT--TGATAGGGAAAGGGGATTGCAATTATTTCCCAT-AACGAGGAATTCCCAGTAAGTGCGGGACATAAGCT-GCGTTGATT--G-CCC--C--TTTGTACACAC---TTTTCGCT-CTACCGATT-GAT-GTTTAGT-AGGT-CTCGGAT-GGCCCC---GGGGT-GG-CGACGGCCCT-----AGCGCCGAGAAGACGATCAAAC---ACTATC---------------------------------------------------------- Ichthyophis_bannanicus -----------------------------------TCAA-GA---AGCCATGCACGTGTAAGTACACACGGCCGGTACAGTGAAACTGCGAATGGC----TAAATCAGTTAT-G--------ATCGCTC-ATCCGT----ACTTGGATAACTGTGGT---TCT-GAGCT-AT-C-TGCCGACGAGCGCT-ACCCCC-----------CGG-ATGCGTGC-TTTATC-GACCAAAACCAATGGGCT-GCC---C-----------------------------------------------------------------------------------------------GC---GGTGACTCTAGATAACCTCGGGC-GATCGCACGTC-CGCGTGACGGCGACGATACATTCGGATGTCTGCCCTATC-ACTTTCGATGGTACTTTCT--GCCTACCATGGTGAC-ACGGGTAACGGGGAATCAGGG--CGA----GGAGA-GGAGCC-GAGAAACGGCT-CCACA--CAAG-A-GGCAGCA-GCGC----ATTACCGACTCC-GACT-GGGGA---A---A--AAAAATAACAATACAGGACTCT-TCGAGGC--GGG-ATTGGAATGAGTACACTTT-AA-CCTTTAACGAGGAT-CA--GGAGGGCAA-------GCC-GCAGC-GCGG---TTCCAGCTCCAATA--GTATATT-AAGTTGC-GCAGTT--AAAGCTCGTAGTT-GATCTTG----------GGATCGAGCTGG--GTC-GC-GCGAGGCGACG--CCGC--GTCCCA-GCCCCC-G--TCTCGGCGCCTCCC-GATGCTCTTGACT-AGTGTCCCG--GGGGCCCGAAG-G--TACTTTGAAAAAATT-GAGTGTTCAAAGCAGGCC-G--TCGCCTGAATACTTCAG-T-GGAATAATGGAATAGGACTCCGGTTC--TTTTGTT-GTTTTCGGAACTGGGGCCATGATTAAGAGGG--------------TCGTATTGTGCCGCTAGAGGT-AAATTCTTGGACCGGCGCTAGACGAACC-AAGCGAAAGCATTTGCC-AGAAT-TTTTCATT-ATC-A-AA-GAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGT-GTTCCGACCAT-AACGATGCCGACTTGCGATCCGGCG---TTTTTCCCATGACCCGC---GCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGG---GTATGGTTGCAAAGCT-AAACTTAA------------------------------------------------------AACACGGGT-ACCT--CCCGGCC-GGACACGGAAAGG----------------------------------------TTT--A---CTTTT-TT-GTT--T-GA----TTTGTCTTGTTTATTCCGATAAC---T-A-TC-TC-TC-ATGCTTACTAGTTACGCGACCCCCA-GC-GTCGG--T-C-----TTT-TTA-ATGG-CAAGTGGACTTCAGCCACACGAGATCGAGCAATAACATGTCTGT-ATGCCCTTAGATGTCC----CTGC-CGCGCGCT-CACTGA-ACGGATCAGCGTGTGTCTACCCTTCGC-GACAGGT--GGGTTACCCGCT-AACCCCGTT--TGATAGGGATAGGGGATTGC-ATTATTTCCCAT-AACGAGGTATTCCCAGTAAGTGCGGGTCATAAGCT-GCGTTGATT--GTCCCC-CCC--TGTACACAC--CC--TCGCT-CTACC-ATTGGATGGTTTAGTGAGGT-CTCGGAT-GGCCCCC--GGGGT-GG-CGACGGCC-T------GCGCCGAGAAGACGATCAAAC---ACTATC---------------------------------------------------------- Latimeria_chalumnae TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACAAACGGTGCGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGATCGCTCCAAC-GT---TACTCGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGAGCGCTGACCTTC-----------GGGGATGCGTGCATTTATCAGACCAAAACCAATCCGGGTCCGCCCGGCC--------------------------------------------------------------------------------------------GCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGTC-CTCGTGGCGGCGACGATTCCTTCGAATGTCTGCCCTATCAACTTTCGATGGTACTTTCTGTGCCTACCATGGTGACCACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGACGCGGGGAGGTAGTGACGAAAAATAACAATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTACACTTTAAATCCTTTAACGAGGATCTATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAGTAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTG----------GGATCGAGCTGGCGGTCCGCCGCGAGGCGAGCTACCGCCTGTCCCA-GCCCCT-GCCTCTTGGCGCTCCCTTGATGCTCTTAACTGAGTGTCCTG--GGGGTCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGG--TCGCTTGGATACTTCAGCTAGGAATAATGGAATAGGACTCCGGTTCTATTTTGTTGGTTTTCGGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACAAAAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCAACTACCGATCCGGCGGCGTTATTTCCATGACCCGCCGGGCAGGTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACCCGGCCCGGACACGGAAAGGATTGACAGATTGATAGCTCTTTCTCGATTCTGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCC-TCCATGCTAAATAGTTACGCGACCCCGA-GTGGTCGGCGTCC---AACTTCTTAGAGGGACAAGTGACGTTTAGCCACACGAGATTGAGCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGA-ATGGATCAGCGTGTGTCTACCCTACACCGACAGGTGCGGGTAACCCGTTGAACCCCATTCGTGATAGGGATCGGGGATTGCAATTATTTCCCGTGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGGTCCTCGGATCGGACCCGCCGGGGTCGT-CCGCGGCCCTGGCGGAGCGCTGAGAAGACGATCAAACTTGACTATCTAGAGGAAGTAAAAGTCGT--------------------------------------- Mus_musculus TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCCTTCCCGGGG-GGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTGAGCTCCCTCCCGGCTCCGGCCGGGGGTCGGGCGCCGGCG---------------------------------------------------------------GCTT-GGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTCGCCGTGCCTACCATGGTGACCACGGGTGACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGACCCGGGGAGGTAGTGACGAAAAATAACAATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTG----------GGAGCGGGCGGGCGGTCCGCCGCGAGGCGAGTCACCGCCCGTCCCC-GCCCCTTGCCTCTCGGCGCCCCCTCGATGCTCTTAGCTGAGTGTCCCG-CGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCGGCGTTATTCCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGGCCT-GCGGCTTAATTTGACTCAACACGGGAAACCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTCGATTCCGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCT-GGCATGCTAACTAGTTACGCGACCCCCGAGCGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGA-CTGGCTCAGCGTGTGCCTACCCTGCGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA Nesomantis_thomasseti --CCT-GTT-ATCCTGCCAGTAGCT---GCTTGTCTC-AAGATTAAGCCATGCACGTGTGAGT-CGCACGGCCGGTAC-GTGAAACTGCGAATGGC---TTAAATCAGTTAT-G---CTT--ATCGCTCCATCC------AC-----------------------------------------------------------------AGGGATGCGTGCATTTAT-AGACCAAAACCAAT-GGG-----------------GGGTTTG--GG-G--GGGGGGGGGGGGTCGCGT-AG-C-------CC---G-CC--TCCTCCCG-GCCC-C-GTCCC-TCCC----CGCCT-GGT-ACTCTAGATAACCTCGGG---ATCGCACGTC-CCCGTGACGGCGACGATACATTCGGATGTCTGCCCTATCAACTTTCGATGGT-CTTTCTGCGCCTACCATGGTGACCACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCT-CCACATCCAAGGA-GGCAGCAGGCGCGC--ATTACCCACTCC-GAC--GGGGAG-TAGTGAC-AAAAATAACAATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTACACTTT-AA-CCTTTAACGAGGATCC-TTGGAGGGCCAGTCTGGTGCCAGCAGCCGCGG---TTCCAGCTCCAATA--GTATATT-AAGTTGCTGCAGTT--AAAGCTCGTAGTT-GATCTTG----------GGATCGAGCTGG-GGTC-GCCGTGAGGCGA-G--CCGCC-GTCCCA-GCCCC--G--TCTCGGCGCCTCCCCGATGCTCTTGACTGAGTGTCCCG--GGGGCCCGAAGCG--TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC------GCCTGAATACTTCAGCTAGGAATAATGGAATAGGACTCCGGTTCT-TTTTGTT-GTTTTCGGAACTGGGGCCATGATTAAGAGGG--------------TCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGAACCAAAGCGAAAGCATTTGCCAAGAAT-TTTTCATTAATCAAGAA-GAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTAGCGATCCGGCGGCGTTTTTCCCATGACCCGCCGG-CAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCT-AAACTTAA------------------------------------------------------AACACGGG-AACCT--CCCGGCCCGGACACGGAAAGGA----------------------------------------TTGC-TGGCTTTT-TT-GTTGGTGGAG---TTTGTCT-GTTTATTCCGATAACGA--GAGACT-C-TCCGTGCT-ACT-GTTACGCGACCCC------GTCCGCGTCC-----CTT-TTAG-GGGACAAGT-G-GCTTAGCCACGCGAGATCGAGCAATAACA-GTCTGT-ATGCCCTTAGATGTCCG---CTGCACGCGCGCT-CACTGA-ACGGACCAGCGTGTGTCTACCCTTCGC-GACAGGT--GGG--ACCCGCT-AACCCC----GTGA-AGGGA--GGGGATTGCAATTATTTCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCT-GCGTTGATT--GTCCCT-CCCTTTGTAC-CAC----TTTCGCTACTCCCGAT-GGAT-GTTTAGTGAGGT-C-CGGAT-GGCCCCC--GGGGTCGC-C-ACGGCCCT-----CGCGCCGAGAAGACGATCAAAC---ACTATC---------------------------------------------------------- Oryctolagus_cuniculus TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGG-CGCTGACTCCC-TTTGTG----TGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCTCCCCGCCGGCCGGGGGGGTGGGGCGGCG---------------------------------------------------------------------GCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCA-GCCCTCCGTGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTCGCCGTGCCTACCATGGTGACCACGGGTGACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGACCCGGGGAGGTAGTGACGAAAAATAACAATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATTGGAGGGCAAGTCTGGTCGCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGTGGAGGGTGCGTAGCGGGCG----GTCCGCCGCGAGGCGAGCCACCGCCCGTCCCC-GCCCCTTGCCTCTCGGCGCCCCCTCGATGCTCTTAGCTGAGTGTCCCG-CGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCGGCGTTATTCCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTCGATTCTGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCT-GGCATGCTAACTAGTTACGCGACCCCCGAGCGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAATAACAGGTCTGTGATGCCCTTAGATGTC-GGGGCTGCACGCGCGCTACACTGA-CTGGCTCAGCGTGTGCCTACCCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGGCCCTCGGATCGGCCC-GCCGGGGTCGGCCCACGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA Plethodon_yonhalossee -----GGTT-ATCCTGCCAG-AGCA---GCTTGTCTCAAAGATTAAGCCATGCACGTGTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCT--TTAAATCAGTTA------CTT--ATCGCTCCAT---T---TACTTGGATAACTGTGGT-ATTC--GAGCT-ATACATGCCGA-GAGCGCT-ACCTTCAC---------CGGGATG-GTGCATTTATCAGACC--AACCAATCGGG-GCCC-CCT-G----------------------------------------------------------------------------------------------CTTTGGT-ACTCTAGATAACCT-GGG-T-ATCGCA-GTC-CCCGTGACGGCG---------------------------------------------------------------------------GGGAA--AGGG---------GGAGAGGGAGCCTGAGAAACGGCT-CCACAT-CAAGG--GGCAGCAGGCGC-C--ATTACCCAC-CC-GAC-CGGGGA-----T-A--AAAAATAACAATACAGGACTCT--CGAGGCCCTG--ATTGGAATGAGTACACTTT-AA-CCTTTAACGAGGATCCATTGGA---C-AGTCT-GTGCC--CAGCCGCG----TTCCAGCTCCAA---CGTATATTAAAGTTGC-GCAGTT--AAAGCTCGTAGTT-GATCTTG----------GGAT-GAGCT----GTCCGCCGCGAGGCGA----CCGC--GTCCCA-GCCC------TCT-GGT-CCCCCCCGATGCTCT---CT-AGTGTCCCG--GG--TCCGAAGT-TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC-G--T-GCCT-AATACTTCAGCTAGGAATAATGGAATAGGACTCC-GTTCT-TTTTGTT-GTTTTCGGAACTGGGG--ATGATTAAGAGGGACG------------CGTATTGTGCCGCTAGAGGT-AAATTCTTGGACCGGCGCAAGACGAACCAAAGCGAAAGCATTTGCCAAGAAT-TTTTCATTAATCAAGAA-GAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGT-GTTCCGACCATAAACGATGCCGACTAGCGATCCGGCGGCGTTTTTCCCATGACCCGCCTAGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCT-AAACTTAAAGGAATTG----------------------------------------------------GGAAACCT-ACCCGGCCCGGACACGG-AAGGA---ACAGATTGATAGCT-TTTCTCGATTCTGTGGGT--T-TTGC-TGGCT-TTCTTAGTTGGTGGAG--ATTTGTCT-GTT-ATTCCGAT-ACGA--GAGACT-C-TCCATGCT-AC-AGTTACGCGACCCCC--GC-GTCGGCGT-----T-CT---TAGAGGGAC-AGTGGCGTT-AGCCACACGAGATCGAGCAATAA---GTCTGTGATGCCCTTAGATGTCC----C-GC-CGCGCGCTAC-CTGA-ACGGATCAGCGTGTGTCTACCCTTCGCCGACAGGT-CGGG--ACCCGCT-AACCCCGTT-GTGATAGGGATTGGGGATTGCAATTATTTCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCT-GCGTTGATT--GTCCC--C--TTTGTACACACC-----TCGCTACTACCGATTGGATGGTTTAGTGAGGT-CT-GGAT-GGCCCCC--GGGGT-GG-C-ACG-CC-T------GCGCCGAGAAGACGATCAAACT-GACTATC---------------------------------------------------------- Rattus_norvegicus TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCCTTCCCGTGGGGGGAACGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCCCCTCCCGGCTCCGGCCGGGGGTCGGGCGCCCGGCG--------------------------------------------------------------GCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGT-CCCCGTGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTCGCCGTGCCTACCATGGTGACCACGGGTGACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGACCCGGGGAGGTAGTGACGAAAAATAACAATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTG----------GGAGCGGGCGGGCGGTCCGCCGCGAGGCGGCTCAGCGCCCGTCCCCAGCCCCT-GCCTCTCGGCGCCCCCTCGATGCTCTTAGCTGAGTGTCCCG-CGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGAACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCGGCGTTATTCCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACCCGGCCCGGACACGGACAGGATTGACAGGTTGATAGCTCTTTCTCGATTCCGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCTCGGCATGCTAACTAGTTACGCGACCCCCGAGCGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACC-GAGATTGAGCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGAACTGGTTCAGCGTGTGCCTACCCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGCCTTGGCGGAGGCCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA Scaphiopus_holbrooki ------GTT-AT--TGC-AG--G-----GCTTGTCTC-----TT-AGCCATGCACGTGTAAGTACACACGGCCGGTACAGTGAAACTGCGAATGGC---TTAAATCAGTTAT-G---CTT--ATCGCTC-ATC--T----ACTTGGATAA---------------------------------------------------------AGG-ATGCGTGCATTTATCAGACCAAAACCAATCGGGTGGC-C-CCCCTCCC--CC-------------------------------------------------------------------------------------GCT--GGT-ACTCTAGATAACCTCGGGCCGATCGCA--TC-CCCGTGACGGCGACGATA--TTTGGATGTCTGCCCTAT--ACTTTCGAT-GT-CTTTCTGTGCCTACCTTGGTGACCACGGGTT--GGG--AT--GG-TT-G-TT-CGGAGA--G-GCCT-AG-AACGGCT-CCACAT-CAAGGT-GGCAGCAGGCGC----ATTACCCACTCC-GACTCGGGGA---AGTGA--AAAAATAACAATACAGGACTCTTTCGAGGCCCTGT-ATTGGAATGAGTACACTTT-AA-CCTTTAACGAGGATCTATTGGAGGGCAAGTC--------GCAGCCGC-G--ATTCCAGCTCCAATA--GTATATT-AAGTTGCT-C-GTT--AAAGCT-GTAGTT-GATCTTG----------GGAT-GAGCT----GTCCGCCGCGAGGCGACG--CCGC--GTCCC--GCCCCC----TCT----GCCTCCC--ATGCTCTTGACT-AGTGTCCCG--GG---CCGAAG----TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC-G--TCGCCTGAATACTTCAGCTAGGAATAATGGAATAGGACTCCGGTTCT-TTTTGTT-GTTTTCGGAACTGGGG--ATGATTAAGAGGGACGG-----------CGTATTGTGCCGCTAGAGGT-AAATTCTT-GACCGGCGCAAGACGAACCAAAGCGAAAGCATTTGCCAAGAAT-TTTTCATTAATCAAGAA-GAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGT-GTTCCGACCATAAACGATGCCGACTAGCGATCCGGCGGCGTTTTTCCCATGACCCGCC-AGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCTGAAACTTAAAGG---------------------------------------------------------GG-AACCT--CCC--CCCGGACACGGAAAGGA---ACAGATTGATAGC------------------------TTG--TGGCTTTT-TT-GTTGGTGGAG---TTTGTCT-GTTTATTCCGATAACGAA-GAGACT-C-TC-AT-CT-ACT-GTTACGCGAACCC---GC-GT-GG-GT-------CT--TTAGAGGGACAAGTGGCGTTCAGCCACACGAGA--GAGCAATAA-A-GTCTGT-ATGCCCTTAGATGTCC----CTGCACGCGCGCT-CACT-A-ACGGATCAGCGTGTGTCTACCCTTCGC-GACAGG---GGG--ACCCGCT-AA-CCCGTT-GTGA-AGGGATTGGGGATTGCAATTATTTCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGC--GC-TTGATT--GTCCCT-CCCTTTGTAC-CAC---TTTTCGCT-CTACCGATTGGATGGTTTAGTGAGGTCCTCGGAT-GGCCCCC--GGGGT-GG-C-ACGGCCCT----GAGC-CCGAGAAGACGATCAAAC--G--TATC---------------------------------------------------------- Sceloporus_undulatus ----------------------------GC--GTCTCAAAGATTAAGCCATGCATGTCTAAGTACACACGGGCGTTA-AGTGAAACTGCGAATGGCT---TAAATCAGTTATGGT--CT---GTCGCTCCCCC--T---TCCTTGGATAACTGTGGT---TCTAGAGCTAATACATGCCAACGAGCGCTGACCTCC-----------GGGGATGCGTGCATTTATCAGACCAAAACCAACGGGCTCGCCC--CC----------------------------------------------------------------------------------------------GCT-TGGT-ACTCTAGATAACCTCGGGCCGATCGCA-GCC-C-CGTGGCGGCGACGACGCATTCGAATGTCT-CCCTATCAACTTTCGATGGTACTTTCTGCGCCTACCATGGTGACC-CGGGTA--GGGGAATCAGGGTTCGATT--GG-GAGGGAGCCTGAGAA-CGGCT-CCACATCCAAGG--GGCAGCAGGCGC----ATTACC-ACTCCCGAC--GGGGAG-TAGTGA--AAAAATAACAATACAGGACTCTTTCGAGGCCCTGT-ATTGGAATGAGTACACTTTAAATCCTTTAACGAGGA-CCATTGGAGGGCAAG------------------------------------------------------------------------------------------------------------------------------G-CCGCC-GTCCCA-GCCCCC-G--TCTCGGCGCTCCCCCGATGCTCTTAGCTGAGTGTCC-G--GGG-TCCGAAG----TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC-GC--TCGCCTGAATACTCCAGCT-GGAATAAT-GAATAGGACTCCGGTTCT-TTTTGTT-GTTTTCGGAACTGGGGCCATGATTAAGAGGG-CGC--GGG----TTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGAACCAGAGCGAAAGCATTTGCCAAGAAT-TTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTAGCGATCCGGCGGCGTTATTCC--T-A-CCGCC-----GCTTCCGGGAAACCAAAGTG-TTGGGT-----------------------------------------------------------------------------------------AACACGGGAAACCTC-CCCGGCCCGGACACGGAAAGGA--GACAGATCGATAGCTCTTTCTCGATTC-GT-GGT-----TGCATGGC---TCTTAGTTGGTGGAGC-ATTTGTCT-GTT-ATTCCGATAACGA--GAGACTCT-GGCATGCT-ACTAGTTATGCGACCCCCGAGCGGTCGG-GTCC---AA--T-TTAGAGGGACAAGTGGCGTT-AGCCACCCGAGATT-AGCAATAACA-GTCTGTGATGCCCTTAGATGTCCGG-GCTGCA-GCGCGCTACACTGA-CTGGCT-AGCGTGTGTCTACCCTACGCCGACAGGTGCGGGTAACC-GTTGAACCCCATTCGTGA-GGGGATCGGGGATTGCAATTATTCCC-AT-AACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCGCGTTGATT--GTCCCTGCCCTTTGTACACACCTC---TCGCTACTACCGATTGGATGGTTTAGTGAGGTCCTCGGAT-GGCCCCGCCGGGGTCG--CCTCGGCCC------AGCGCCGAGAAGACGGTCGAACT--ACTATCTAGAGGAAG------------------------------------------------- Siren_intermedia --CCTGGTTGATCCTGCCAGTAGCA---GCTTGTCTCAAAGATTAAGCCATGCACGTGTAAGTACACACGGCCGGTACAGTGAAACTGCGAATGGCT-A-TAAATCAGTTATGGT--CTT--ATCGCT---CC-GT---TACTTGGATAACTGTGGT-ATTCT-GAGCTAATACATGCCGACGAGCGCTGACCTC------------CGGGATGCGTGCATTTATCAGACCAAGACCAATGGGC-CGCC----CC---------------------------------------------------------------------------------------------GCT--GGT-ACTCTAGATAACCTCGGGCC-ATCGCACGTCCCCCGTGACGGCGACGATGCATTCGGATGTCTGCCCTATCAACTTTCGATGGTACTTTCTGTGCCTACCATGGTGACCACGGGTAACGGGGAATCAGG-TTC------GGAGAGGGA-CCTGAGAAACGGCT-C-A-A-CCAAGG--GGCAGCAGG-GC----ATTACCCACTCCCGAC-TGGGGA--TAGT-A--AAAAATAACAATACAGGACTCTTTCGAGGCCCTGT-ATTGGAATGAGTACACT-T-AATCCTTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCTAGCAGC---GG---TT-CAGCTCCAA-AGCGTATATTAAAGTTGCTGCAGTT--AAAGCTCGTAG---GATCTTG----------GGATCGAGCT----GTCCGCCGCGAGGCGAG-CACCGC--GTCCCA-GCCCCC-G--TCTCGGCGCCCCCTCGATGCTCTTGACTGAGTGTCCCG--GG---CCGAA-----TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGG--TCGCCTGAATACTGCAGCTAGGAATAATGGAATAGGACTCCGGTTCT-TTTTGTT-GTTTTCGGAACTGGGGCCATGATTAAGAGGGACG-CCGG-----TTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACTAAAGCGAAAGCATTTGCCAAGAAT-TTTTCATTAATCAAGAA-GAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGT-GTTCCGACCATAAACGATGCCGACT-GC-ATCCGGCGGC-TTATTCCC-T-ACCCGCC--GCAGCTTCCGGGAAACCAAAGTC--TGGG---CGGGGGGAG-AGGGT---------------------------------------------------------------------------------AACCTCACCCGGCCCGGACACGGAAAG-----ACAGATTGATAGCTCTTTCTCGATTCTGTGGGT-----TGCATGGC----CTTAGTTGGTGGAG------GTCTGGTTAATTCCGATAACGAA-GAGACTCC-CACATGCTAACTAGTTACGCGACCCCCA-GT-GTCGGCGTCC---AA-T--TTAGAGGGA-AAGTGGCGTTCAGCCACACGAGAT-GAGCAATAA-A-GTCTGT-ATGCCCTTAGATGT-------TGCA-GCGCGCTACACTGA-ACGGATCAGCGTGTGTCTACCCTTCGCCGACAGG---GGGTAACCCGCT-AACCCCGTTCGTGATAGGGATTGGGGATTGCAATTATTTCCCAT-AACGAGGAATTCCCAGTAAGT--GGGTCATAAGCT-GTGTTGATT--GTCCCT-CC-TTTGTAC-CAC------TCGCTACTACCGATTGGATGGTTTAGTGAG-TCCTCGGAT--GCCCC-C-GGGGT-GG-CG-CGGCC----------GCCGAG-AGACGATCAAACT--ACTA------------------------------------------------------------ Trachemys_scripta --CCTGGTTGATCCTGCCAGTAGCATA-GCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACACACGGCCGGTACAGTGAAACTGCGAATGGC---TTAAATCAGTTATGGT--CTT--GTCGCTCC-ACCCT---TACTTGGATAACTGTGGT---TCT-GAGCT-AT-CATGCCGACGAGCGCTGACCTCC-----------GGG-ATGCGTGCATTTATCAGACCAAAACCAACGGGCTCGCCCGGCC----------------------------------------------------------------------------------------------GCT-TGGTGACTCTAGATAACCTCGGGC-GATCGCA-GCCCCCCGTGGCGGCGACGATGCATTCGAATGTCT-CCCTATCAACTTTCGATGGTACTTCCTGTGCCTACCATGGTGACCACGGGTAACGGGGAATCAGGGTTCGATT--GG-GAGGGA-CCTGAGAA-CGGCT-CCACATCCAAGGA-GGCAGCA-G-GCG---ATTACCCACTCCCGAC--GGGGAG-TAGTGA--AAAAATAACAATACAGGACTCTTTCGAGGCCCTGT-ATTGGAATGAGTACACTTTAAA-CCTTTAACGAGGA-CCATTGGAGGGCAAG-----------------------TTCCAGCTCCAATA--GTATATT-AAGTTGCT-C-G----AAAGCTCGTAG----ATCTTG----------GGATCGAGC-----GTCCGCCGCGAGGCGA-CG-CCGCC-GTCCCA-GCCCCC-G--TCTCGGCGCTCCCTTGATGCTCTT-ACT-AGTGTCCTG--GG-GTCCGAA-----TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC--G--TCGCCGGAATACTCCAGCTAGGAATAA-GGAATAGGACTCCGGTTCT-TTTTGTT-GTTTTCGGAACTGGGG--ATGATTAAGAGGAACGC-C-------TTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAAAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTAGCGATCCGGCGGCGTTATTCCCA-GA-CCGC----CAGCTTACGGGAAACCAAAGTCTTTGGGT-CCGGGGGGAG-ATGG-------------------------------------------------------------------------AA-ACGGG--ACC---CCCGGCC-GGACACGGAAAGGA---ACAGATTGATAGCTCTTTCTCGATT-TGTGGG------TGCATGGC----CTTAGTTGGTGGAGC-ATTTGTCTGGTT-ATTCCGATAACGA-CGAGACT-T-GGCATGCTAAC-AGTTATGCGACCCC-GAGCGGTCGG---CC---AA----TTAGAGGGACAAGT-GCGTTTAGCCACCCGAGATT-AGCAATAACA-GTCTGT-ATGCCCTTA-ATGTCC----CTGCACGCGCGCT-CACTGA-CTGGCT-AGCGT-TGTCTACCCTACGCCGACAGGTGCGGG--ACC-GTTGAACCCCATTCGTGATGGG-ATCGGGGATTGCAATTATTCCC-AT-AACGA-GAATTCCCAGTAAGTGCGGGTCATAAGCT-G--TTGATT--GTCCCT-C--TTTGTACACACC-----TCGCTACTACCGATTGGATGGTTTAGTGAGGTCCTCGGATCGGCCCTGCCGGGGTCGG-TC-CGGCCCT-GT-GAGCGCCGAGAAGACGGTCGAAC---ACTATCTAGAGGAAG------------------------------------------------- Turdus_migratorius --CCTGGTTGATCCTGCCAGTAGCAT--GCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACACACGGGCGGTACAGTGAAACTGCGAATGGC----TAAATCAGTTATGGT--CTT--GTCGCTCCTCTCCCGC-TCCTTGGATAACTGTGGT---TCTAGAGCTAAT-CATGCCGACGAGCGCCGACCTCC-----------GGGGACGCGTGCATTTATCAGACCAAAACCAACGG----GCCC---A----------------------------------------------------------------------------------------------GCT-TGGTGACTCTAGATAACCTCGAGCCGATCGCA-GC-CCCCGCGGCGGCGACGACCCATTCGAATG----CCCTATCAACTT-CGATGGTACTGTCTGTGCCTACCATGGTGACCACGGGTGACGGG-AATCAGG--TCGAT-CCGG-GAG-GAGCCTGAGAA-CGGCT-CCACATCCAAGG--GGCAGCAGGCGCG---ATTACCCACTCCCGACCCGGGGA--TAGT-A--AAAAATAACAATACAGGACTCTTTCGAGGCCCTG--ATTGGAATGAGCGCACTTTAAATCCTTGAGCGAGGA-CCATTGGAGGGC--G-----TGCC-GCAGC-GCGG--ATTCCAGCTCCAATAGCGTATCTTAAAGTTGCTGCAGTT--AAAGCTCGTAG---GATCTTG----------GGATCGAGCT----GTCCGCCGCGAGGCGAGCCACCGCCTGTCCCA-GCCCCC-G--TCTCGGCGCCCCCTCGATGCTCTTAGCTGAGTGTCCGC--GGGGCC-GAAGCGTTTACTTTGAGAAAATTAGAGTGTTCAAAGCAGGCCG---CCGCCGG-ATACTGCAGCTAGGAATAATGGAATAGGACTCCGGTTCT-TTTTGTTGGTTTTCGGAAACGGGGCCATGATTAAGAGGGACGC-CGGG----TTCGTATTGTGCCGCTAGAGGT-AAATTCTTGGACCGGCGCAAGACGGCCTAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAA-GAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACT-GCGATCCGGCGGCGTTATTCCCATGACCCGC----CAGCTCCCGGGAAACCCAAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCT-AAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGCAG--G-GGCTTTATTT-----AACACGGGAAACCTCACCCG-CC-GGACACGGACAGGAT-GACAGATTGAGAGCTCTTTCTCGATTCCGTGGGT-G---TGCATGGC---TCTTAGTTGGTGGAGCGATTTGTCT-GTT-ATTCCGATAACGAACGAGACTCT-GGCATGCTAACTAGTTACGCGACCCCCGAGCGGTCGG--TCC---AA--TCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAATAACA-GTCTGTGATGCCCTTAGATGTCCGG-GC-GCACGCGCGCTACACTGA-CTGGCT-AGCTTGTGCC--CCCT-CGCCGG-AGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGG-ATCGGGGATTGCAATTCTTCCCCGTGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCT-GCGTTGATT--GTCCCT-C--TTTGTACACAC------TTGCTACTACCGATTGGATGGTTTAGTGAGGT-CTCGGATCGGCC--GC-GGGGT-G---C--GGC--TGC---AGTGTCGAGAAGACGGTCGAACT--ACTATCTAGAGGAAGC------------------------------------------------ Typhlonectes_natans ----TGGTTGATCCTGCCAGTAGCA---GCTTGTCTCAAAGATTAAGCCATGCACGTGTAAGTACACACGGCCGGTACAGTGAAACTGCGAATGGCT---TAAATCAGTTATGGT--CTT--ATCGCTCCATCC------ACTTGGATAACTGTGGT---TCT-GAGCT-AT-CATGCCGACGAGCGCTGACCTCC-----------CGG--TGCGTGCATTTATCAGACCA-AACCAATGG-CTCGCCC--CC----------------------------------------------------------------------------------------------GC---GGT-ACTCTAGATAACCTCGGGC-GATCGCA-GTCCCCCGTGACGGCGACGATGCATTCGGATGTCT-CCCTATCAACTTTCGATGGTACTTTCCG-GCCTACCATGGTGACCACGGGTAACGGGG-ATCAGG-TTCG-TT-CGG-GAGGGAGCCTGAG-A-CGGCT-CCACATCCAAGGA-GGCAGCAGGCG-----ATTACC-ACTCCCGAC--GGGGA----GT----AAAAATAACAATACAGGACTCTTTCGAGGCCCTGT-ATTGGAATGAGTACACTTT-AATCCTTTAACGAGGAT-CATTGGAGGGC-----------------------------------------------------------------------------------------------------------------------------------CCGCCTGTCCCA-GCCCCC-G--TCTCGG-GCCTCC-C-ATGCTCTTGACTGAGTGTCCCG--G--GTCCGAAG--TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGG--TCGCCTGAATACTTCAGCTAGGAATAATGGAATAGGACT-GGGTTCT-TTTTGT--GTTTTCGGAACTGGGG---T-ATTAAGAGGGACG----------TTCGTATTGTGCCGCTAGAGGT---ATTCTT-GACCGGCGC-AGACGAACCAAAGCGAAAGCATTTGCCAAGAAT-T--TCATTAATCAAGA--GAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGT-GTTCCGACCATAAACGATGCCGACT-GCGATCCGGC-GCGTT-TTC-AAT-ACCCGC---GCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGG--AGTATGGTTG-AA---TGAAACTTAAAGGAA---ACGGAAGGGCA-----AGGAG-GGCAG--GCGGCTTAAT--G----AACACGGGAAACCTCACCCGGCCCGGACACGGAAAGGA--GACAGATCGATAGCTCTTTCTCGATTCTGTGGGT----GTGCATGGCTGTTCTTAGTTGGTGGAGC-ATTTGTCTGGTTAATTCCGATAACGAATGAGAC--C-TCCATGCTAACTAGTTACGCGACCCCCA-GC-GTCGG-GTCC----A---CTTAGAGGGACAAGTGGCGTTTAGCCACACGAGAT-GAGCAATAACATGTCTGTTATGCCCTTA-ATGTCC----CTGCACGCGCGCT-CACTGA-A-GGATCAGCGTGTGTCTACCCTTCGCCGACAGGT-CGGGT-ACCCGCT-AACCCCGTTCGTGATAGGGATCGGGGATTGCAATTATTTCCCATGAACGAGGAATTCCC-GTAAGTGCGGGTCATAAGCT-GCGTTGATT--GTCCCTTCCCTTTGTACACAC--C-T-TCGCTACTACCGATTGGATGGTTTAGTGAGGTCCTCGGATCGGCCCCGCCGGGGTCGG-CG--GGCCC------AG-GCCGAG-AGACGATCAAACT--ACTATCT---GGAAG------------------------------------------------- Xenopus_laevis TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCACGTGTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGATCGCTCCATCTGT---TACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGAGCGCTGACCCCC-----------AGGGATGCGTGCATTTATCAGACCAAAACCAATCCGGGGCCCCCGCGCCCCGGCC--------------------------------------------------------------------------------------GCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGTC-CCCGTGACGGCGACGATACATTCGGATGTCTGCCCTATCAACTTTCGATGGTACTTTCTGCGCCTACCATGGTGACCACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGACGCGGGGAGGTAGTGACGAAAAATAACAATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTACACTTTAAATCCTTTAACGAGGATCTATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTG----------GGATCGAGCTGGCGGTCCGCCGCGAGGCGAGCTACCGCCTGTCCCA-GCCCCT-GCCTCTCGGCGCCTCCCCGATGCTCTTGACTGAGTGTCCCG--GGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCCAAGCAGGCCGCG-TCGCCTGGATACTTCAGCTAGGAATAATGGAATAGGACTCCGGTTCTATTTTGTTGGTTTTCGGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGAACCAAAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTAGCGATCCGGCGGCGTTATTCCCATGACCCGCCGAGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACCCGGCCCGGACACGGAAAGGATTGACAGATTGATAGCTCTTTCTCGATTCTGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCC-TCCATGCTAACTAGTTACGCGACCCCCG-GCGGTCGGCGTCC---AACTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGAGATCGAGCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGA-ACGGATCAGCGTGTGTCTACCCTGCGCCGACAGGTGCGGGTAACCCGCTGAACCCCGTTCGTGATAGGGATCGGGGATTGCAATTATTTCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGGTCCTCGGATCGGCCCCGCCGGGGTCGG-CCACGGCCCTGGCGGAGCGCCGAGAAGACGATCAAACTTGACTATCTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2022] TITLE Fig._C1; LINK TAXA = Taxa1; DIMENSIONS NCHAR=55; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 ] [ . . . . . ] Acomys_cahirinus -FV-{DN}QHLCGSHLVEALYLVCGERGFFYTP-KSGIVDQCCTSICSLYQLENYCN- Alligator_mississippiensis -AA-NQRLCGSHLVDALYLVCGERGFFYSP-KGGIVEQCCHNTCSLYQLENYCN- Anas_platyrhynchos -AA-NQHLCGSHLVEALYLVCGERGFFYSP-KTGIVEQCCENPCSLYQLENYCN- Anser_anser -AA-NQHLCGSHLVEALYLVCGERGFFYSP-KTGIVEQCCENPCSLYQLENYCN- Balaenoptera_borealis -FV-NQHLCGSHLVEALYLVCGERGFFYTP-KAGIVEQCCASTCSLYQLENYCN- Balaenoptera_physalus -FV-NQHLCGSHLVEALYLVCGERGFFYTP-KAGIVEQCCTSICSLYQLENYCN- Batrachoididae MAP-PQHLCGSHLVDALYLVCGDRGFFYNP-K-GIVEQCCHRPCDIFDLQSYCN- Bos_taurus -FV-NQHLCGSHLVEALYLVCGERGFFYTP-KAGIVEQCCASVCSLYQLENYCN- Camelus_dromedarius -FA-NQHLCGSHLVEALYLVCGERGFFYTP-KAGIVEQCCAGSCSLYQLENYCN- Canis_familiaris -FV-NQHLCGSHLVEALYLVCGERGFFYTP-KAGIVEQCCTSICSLYQLENYCN- Capra_hircus -FV-NQHLCGSHLVEALYLVCGERGFFYTP-KAGIVEQCCAGVCSLYQLENYCN- Cavia_porcellus -FV-SRHLCGSNLVETLYSVCQDDGFFYIP-KDGIVDQCCTGTCTRHQLQSYCN- Chinchilla_brevicaudata -FV-NKHLCGSHLVDALYLVCGDRGFFYTP-MAGIVDQCCTSICTLYQLENYCN- Crotalus_atrox -AP-NCRLCGSHLVEALFLICGERGFYYSP-RSGIVEQCCENTCSLYQLENYCN- Cyprinus_carpio NAGAPQHLCGSHLVDALYLVCGPTGFFYNP---GIVEQCCHKPCSIFELQNYCN- Elephas_maximus -FV-NQHLCGSHLVEALYLVCGERGFFYTP-KTGIVEQCCTGVCSLYQLENYCN- Equus_caballus -FV-NQHLCGSHLVEALYLVCGERGFFYTP-KAGIVEQCCTGICSLYQLENYCN- Felis_silvestris_catus -FV-NQHLCGSHLVEALYLVCGERGFFYTP-KAGIVEQCCASVCSLYQLEHYCN- Gadus_callarias MAP-PQHLCGSHLVDALYLVCGDRGFFYNP-K-GIVDQCCHRPCDIFDLQNYCN- Gallus_gallus -AA-NQHLCGSHLVEALYLVCGERGFFYSP-KAGIVEQCCHNTCSLYQLENYCN- Goosefish_lophinus VAP-AQHLCGSHLVDALYLVCGDRGFFYNP---GIVEQCCHRPCNIFDLQNYCN- Homo_sapiens -FV-NQHLCGSHLVEALYLVCGERGFFYTP-K-GIVEQCCTSICSLYQLENYCN- Hydrolagus_colliei V-P-TQRLCGSHLVDALYFVCGERGFFYSP-K-GIVEQCCHNTCSLANLEGYCN- Hystrix_cristata -FV-NQHLCGSHLVEALYLVCGNDGFFYRP-KAGIVDQCCTGVCSLYQLQNYCN- Lepisosteus_spatula -AA-NQHLCGSHLVEALYLVCGEKGFFYNPNKVGIVEQCCHKPCTIYELENYCN- Macaca -FV-NQHLCGSHLVEALYLVCGERGFFYTP-KTGIVEQCCTSICSLYQLENYCN- Meleagris_gallopavo -AA-NQHLCGSHLVEALYLVCGERGFFYSP-KAGIVEQCCHNTCSLYQLENYCN- Mesocricetus_auratus -FV-NQHLCGSHLVEALYLVCGERGFFYTP-KSGIVDQCCTSICSLYQLENYCN- Mus_musculus -FV-KQHLCGPHLVEALYLVCGERGFFYTP-KSGIVDQCCTSICSLYQLENYCN- Myocastor_coypus -YV-SQRLCGSQLVDTLYSVCRHRGF-YRP-NDGIVDQCCTNICSRNQLMSYCND Myoxocephalus -AD-PQHLCGSHLVDALYLVCGDRGFFYNP-K-GIVEQCCHRPCNIRVLENYCN- Myxine_glutinosa -RT-TGHLCGKDLVNALYIACGVRGFFYDPTKMGIVEQCCHKRCSIYDLENYCN- Oncorhynchus -AA-AQHLCGSHLVDALYLVCGEKGFFYTP---GIVEQCCHKPCNIFDLQNYCN- Oryctolagus_cuniculus -FV-NQHLCGSHLVEALYLVCGERGFFYTP-KSGIVEQCCTSICSLYQLENYCN- Ovis_aires -FV-NQHLCGSHLVEALYLVCGERGFFYTP-KAGIVEQCCAGVCSLYQLENYCN- Physeter_catodon -FV-NQHLCGSHLVEALYLVCGERGFFYTP-KAGIVEQCCTSICSLYQLENYCN- Platichthys_flesus VVP-PQHLCGAHLVDALYLVCGERGFFYTP-K-GIVEQCCHKPCNIFDLQNYCN- Proechimys_guairae -YV-GQRLCGSQLVDTLYSVCKHRGF-YRP-SEGIVDQCCTNICSRNQLLTYCN- Saimiri_sciureus -FV-NQHLCGPHLVEALYLVCGERGFFYAP-KTGVVDQCCTSICSLYQLQNYCN- Struthio_camelus -AA-NQHLCGSHLVEALYLVCGERGFFYSP-KAGIVEQCCHNTCSLYQLENYCN- Sus_scrofa -FV-NQHLCGSHLVEALYLVCGERGFFYTP-KAGIVEQCCTSICSLYQLENYCN- Thunnus_thynnus VAP-PQHLCGSHLVDALYLVCGDRGFFYNP-K-GIVEQCCHKPCNIFDLQNYCN- ; END; BEGIN TREES; TITLE Tb5153; LINK TAXA = Taxa1; TRANSLATE 1 Myxine_glutinosa, 2 Lepisosteus_spatula, 3 Hydrolagus_colliei, 4 Goosefish_lophinus, 5 Batrachoididae, 6 Thunnus_thynnus, 7 Platichthys_flesus, 8 Myoxocephalus, 9 Oncorhynchus, 10 Cyprinus_carpio, 11 Gadus_callarias, 12 Crotalus_atrox, 13 Bos_taurus, 14 Saimiri_sciureus, 15 Macaca, 16 Homo_sapiens, 17 Alligator_mississippiensis, 18 Anas_platyrhynchos, 19 Anser_anser, 20 Struthio_camelus, 21 Meleagris_gallopavo, 22 Gallus_gallus, 23 Balaenoptera_borealis, 24 Elephas_maximus, 25 Proechimys_guairae, 26 Myocastor_coypus, 27 Hystrix_cristata, 28 Chinchilla_brevicaudata, 29 Cavia_porcellus, 30 Mesocricetus_auratus, 31 Mus_musculus, 32 Acomys_cahirinus, 33 Oryctolagus_cuniculus, 34 Felis_silvestris_catus, 35 Equus_caballus, 36 Camelus_dromedarius, 37 Physeter_catodon, 38 Balaenoptera_physalus, 39 Canis_familiaris, 40 Sus_scrofa, 41 Capra_hircus, 42 Ovis_aires; TREE Fig._6A = [&R] (((((((25,26),29),27),28,30,32,(31,14),16,15,33,(39,37,38,40),35,24,13,34,23,(41,42)),36)Mammalia,(22,21,20),12,17,3,(19,18),2,((5,11),8,4,6,7,10,9)),1); END; BEGIN TREES; TITLE Tb5155; LINK TAXA = Taxa1; TRANSLATE 1 Myxine_glutinosa, 2 Lepisosteus_spatula, 3 Hydrolagus_colliei, 4 Goosefish_lophinus, 5 Batrachoididae, 6 Thunnus_thynnus, 7 Platichthys_flesus, 8 Myoxocephalus, 9 Oncorhynchus, 10 Cyprinus_carpio, 11 Gadus_callarias, 12 Crotalus_atrox, 13 Bos_taurus, 14 Saimiri_sciureus, 15 Macaca, 16 Homo_sapiens, 17 Alligator_mississippiensis, 18 Anas_platyrhynchos, 19 Anser_anser, 20 Struthio_camelus, 21 Meleagris_gallopavo, 22 Gallus_gallus, 23 Balaenoptera_borealis, 24 Elephas_maximus, 25 Proechimys_guairae, 26 Myocastor_coypus, 27 Hystrix_cristata, 28 Chinchilla_brevicaudata, 29 Cavia_porcellus, 30 Mesocricetus_auratus, 31 Mus_musculus, 32 Acomys_cahirinus, 33 Oryctolagus_cuniculus, 34 Felis_silvestris_catus, 35 Equus_caballus, 36 Camelus_dromedarius, 37 Physeter_catodon, 38 Balaenoptera_physalus, 39 Canis_familiaris, 40 Sus_scrofa, 41 Capra_hircus, 42 Ovis_aires; TREE Fig._6B = [&R] ((((((22,21,20),((17,3),12)),(19,18)),(((13,34,23),((41,42),36)),((((14,((32,31),30)),(((29,(26,25)),27),28)),(16,15,33),(39,37,38,40)),35,24))),(2,(((((5,11),(4,6)),7),(10,9)),8))),1); END; BEGIN TREES; TITLE Tb5152; LINK TAXA = Taxa2; TRANSLATE 1 Oryctolagus_cuniculus, 2 Homo_sapiens, 3 Rattus_norvegicus, 4 Mus_musculus, 5 Gallus_gallus, 6 Turdus_migratorius, 7 Alligator_mississippiensis, 8 Sceloporus_undulatus, 9 Heterodon_platyrhinos, 10 Trachemys_scripta, 11 Typhlonectes_natans, 12 Hypogeophis_rostratus, 13 Grandisonia_alternans, 14 Ichthyophis_bannanicus, 15 Plethodon_yonhalossee, 16 Ambystoma_mexicanum, 17 Amphiuma_tridactylum, 18 Siren_intermedia, 19 Gastrophryne_carolinensis, 20 Hyla_cinerea, 21 Bufo_valliceps, 22 Eleutherodactylus_cuneatus, 23 Nesomantis_thomasseti, 24 Scaphiopus_holbrooki, 25 Xenopus_laevis, 26 Discoglossus_pictus, 27 Latimeria_chalumnae; TREE Fig._2A = [&R] (((11,26,24,14,(17,13,12),15,(16,18),(23,22,19),21,20,25)Lissamphibia,(10,(7,((9,8)Squamates,((6,5)Aves,(3,(2,4,1))Mammalia))))Amniota),27)Tetrapoda; END; BEGIN TREES; TITLE Tb5154; LINK TAXA = Taxa2; TRANSLATE 1 Oryctolagus_cuniculus, 2 Homo_sapiens, 3 Rattus_norvegicus, 4 Mus_musculus, 5 Gallus_gallus, 6 Turdus_migratorius, 7 Alligator_mississippiensis, 8 Sceloporus_undulatus, 9 Heterodon_platyrhinos, 10 Trachemys_scripta, 11 Typhlonectes_natans, 12 Hypogeophis_rostratus, 13 Grandisonia_alternans, 14 Ichthyophis_bannanicus, 15 Plethodon_yonhalossee, 16 Ambystoma_mexicanum, 17 Amphiuma_tridactylum, 18 Siren_intermedia, 19 Gastrophryne_carolinensis, 20 Hyla_cinerea, 21 Bufo_valliceps, 22 Eleutherodactylus_cuneatus, 23 Nesomantis_thomasseti, 24 Scaphiopus_holbrooki, 25 Xenopus_laevis, 26 Discoglossus_pictus, 27 Latimeria_chalumnae; TREE Fig._2B = [&R] ((((((11,((24,26),((17,((14,13),12)),15))),(18,16)),(((23,(22,19)),21),20)),25),((10,7),((9,8),((6,5),((3,2,4),1))))),27); END;