#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 23, 2024; 9:55 GMT TreeBASE (cc) 1994-2008 Study reference: Smith J., & Sytsma K. 1994. Evolution in the Andean epiphytic genus Columnea (Gesneriaceae). II. Chloroplast DNA restriction site variation. Systematic Botany, 19: 317-336. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S367] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=37; TAXLABELS Allopectus_meridensis Allopectus_peruvianus Columnea_angustata_1433 Columnea_angustata_2126 Columnea_angustata_2247 Columnea_angustata_2248 Columnea_brysina_1505 Columnea_brysina_4451 Columnea_colombiana Columnea_crassicaulis Columnea_densibracteata Columnea_inconspicua Columnea_isernii Columnea_lavandulacea Columnea_manabiana Columnea_mira Columnea_moesta Columnea_nervosa Columnea_oblongifolia_1721 Columnea_oblongifolia_1725 Columnea_orientandina Columnea_ovatifolia Columnea_rileyi Columnea_schiedeana Columnea_spathulata_1221 Columnea_spathulata_1853 Columnea_spathulata_1960 Columnea_spathulata_2229 Columnea_spathulata_5398 Columnea_strigos_1220 Columnea_strigos_1927 Columnea_strigosa_1201 Columnea_strigosa_1849 Columnea_trollii_1723 Columnea_trollii_1830 Columnea_ultraviolacea Drymonia_stenophylla ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2029] TITLE Appendix_1; LINK TAXA = Taxa1; DIMENSIONS NCHAR=321; FORMAT DATATYPE=Standard SYMBOLS= "0 1" MISSING=? GAP= -; CHARSTATELABELS 1 cpDNA, 2 cpDNA, 3 cpDNA, 4 cpDNA, 5 cpDNA, 6 cpDNA, 7 cpDNA, 8 cpDNA, 9 cpDNA, 10 cpDNA, 11 cpDNA, 12 cpDNA, 13 cpDNA, 14 cpDNA, 15 cpDNA, 16 cpDNA, 17 cpDNA, 18 cpDNA, 19 cpDNA, 20 cpDNA, 21 cpDNA, 22 cpDNA, 23 cpDNA, 24 cpDNA, 25 cpDNA, 26 cpDNA, 27 cpDNA, 28 cpDNA, 29 cpDNA, 30 cpDNA, 31 cpDNA, 32 cpDNA, 33 cpDNA, 34 cpDNA, 35 cpDNA, 36 cpDNA, 37 cpDNA, 38 cpDNA, 39 cpDNA, 40 cpDNA, 41 cpDNA, 42 cpDNA, 43 cpDNA, 44 cpDNA, 45 cpDNA, 46 cpDNA, 47 cpDNA, 48 cpDNA, 49 cpDNA, 50 cpDNA, 51 cpDNA, 52 cpDNA, 53 cpDNA, 54 cpDNA, 55 cpDNA, 56 cpDNA, 57 cpDNA, 58 cpDNA, 59 cpDNA, 60 cpDNA, 61 cpDNA, 62 cpDNA, 63 cpDNA, 64 cpDNA, 65 cpDNA, 66 cpDNA, 67 cpDNA, 68 cpDNA, 69 cpDNA, 70 cpDNA, 71 cpDNA, 72 cpDNA, 73 cpDNA, 74 cpDNA, 75 cpDNA, 76 cpDNA, 77 cpDNA, 78 cpDNA, 79 cpDNA, 80 cpDNA, 81 cpDNA, 82 cpDNA, 83 cpDNA, 84 cpDNA, 85 cpDNA, 86 cpDNA, 87 cpDNA, 88 cpDNA, 89 cpDNA, 90 cpDNA, 91 cpDNA, 92 cpDNA, 93 cpDNA, 94 cpDNA, 95 cpDNA, 96 cpDNA, 97 cpDNA, 98 cpDNA, 99 cpDNA, 100 cpDNA, 101 cpDNA, 102 cpDNA, 103 cpDNA, 104 cpDNA, 105 cpDNA, 106 cpDNA, 107 cpDNA, 108 cpDNA, 109 cpDNA, 110 cpDNA, 111 cpDNA, 112 cpDNA, 113 cpDNA, 114 cpDNA, 115 cpDNA, 116 cpDNA, 117 cpDNA, 118 cpDNA, 119 cpDNA, 120 cpDNA, 121 cpDNA, 122 cpDNA, 123 cpDNA, 124 cpDNA, 125 cpDNA, 126 cpDNA, 127 cpDNA, 128 cpDNA, 129 cpDNA, 130 cpDNA, 131 cpDNA, 132 cpDNA, 133 cpDNA, 134 cpDNA, 135 cpDNA, 136 cpDNA, 137 cpDNA, 138 cpDNA, 139 cpDNA, 140 cpDNA, 141 cpDNA, 142 cpDNA, 143 cpDNA, 144 cpDNA, 145 cpDNA, 146 cpDNA, 147 cpDNA, 148 cpDNA, 149 cpDNA, 150 cpDNA, 151 cpDNA, 152 cpDNA, 153 cpDNA, 154 cpDNA, 155 cpDNA, 156 cpDNA, 157 cpDNA, 158 cpDNA, 159 cpDNA, 160 cpDNA, 161 cpDNA, 162 cpDNA, 163 cpDNA, 164 cpDNA, 165 cpDNA, 166 cpDNA, 167 cpDNA, 168 cpDNA, 169 cpDNA, 170 cpDNA, 171 cpDNA, 172 cpDNA, 173 cpDNA, 174 cpDNA, 175 cpDNA, 176 cpDNA, 177 cpDNA, 178 cpDNA, 179 cpDNA, 180 cpDNA, 181 cpDNA, 182 cpDNA, 183 cpDNA, 184 cpDNA, 185 cpDNA, 186 cpDNA, 187 cpDNA, 188 cpDNA, 189 cpDNA, 190 cpDNA, 191 cpDNA, 192 cpDNA, 193 cpDNA, 194 cpDNA, 195 cpDNA, 196 cpDNA, 197 cpDNA, 198 cpDNA, 199 cpDNA, 200 cpDNA, 201 cpDNA, 202 cpDNA, 203 cpDNA, 204 cpDNA, 205 cpDNA, 206 cpDNA, 207 cpDNA, 208 cpDNA, 209 cpDNA, 210 cpDNA, 211 cpDNA, 212 cpDNA, 213 cpDNA, 214 cpDNA, 215 cpDNA, 216 cpDNA, 217 cpDNA, 218 cpDNA, 219 cpDNA, 220 cpDNA, 221 cpDNA, 222 cpDNA, 223 cpDNA, 224 cpDNA, 225 cpDNA, 226 cpDNA, 227 cpDNA, 228 cpDNA, 229 cpDNA, 230 cpDNA, 231 cpDNA, 232 cpDNA, 233 cpDNA, 234 cpDNA, 235 cpDNA, 236 cpDNA, 237 cpDNA, 238 cpDNA, 239 cpDNA, 240 cpDNA, 241 cpDNA, 242 cpDNA, 243 cpDNA, 244 cpDNA, 245 cpDNA, 246 cpDNA, 247 cpDNA, 248 cpDNA, 249 cpDNA, 250 cpDNA, 251 cpDNA, 252 cpDNA, 253 cpDNA, 254 cpDNA, 255 cpDNA, 256 cpDNA, 257 cpDNA, 258 cpDNA, 259 cpDNA, 260 cpDNA, 261 cpDNA, 262 cpDNA, 263 cpDNA, 264 cpDNA, 265 cpDNA, 266 cpDNA, 267 cpDNA, 268 cpDNA, 269 cpDNA, 270 cpDNA, 271 cpDNA, 272 cpDNA, 273 cpDNA, 274 cpDNA, 275 cpDNA, 276 cpDNA, 277 cpDNA, 278 cpDNA, 279 cpDNA, 280 cpDNA, 281 cpDNA, 282 cpDNA, 283 cpDNA, 284 cpDNA, 285 cpDNA, 286 cpDNA, 287 cpDNA, 288 cpDNA, 289 cpDNA, 290 cpDNA, 291 cpDNA, 292 cpDNA, 293 cpDNA, 294 cpDNA, 295 cpDNA, 296 cpDNA, 297 cpDNA, 298 cpDNA, 299 cpDNA, 300 cpDNA, 301 rDNA, 302 rDNA, 303 rDNA, 304 rDNA, 305 rDNA, 306 rDNA, 307 rDNA, 308 rDNA, 309 rDNA, 310 rDNA, 311 rDNA, 312 rDNA, 313 rDNA, 314 rDNA, 315 rDNA, 316 rDNA, 317 rDNA, 318 rDNA, 319 rDNA, 320 rDNA, 321 rDNA, ; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Allopectus_meridensis 00010100101110101011001001111000110000100101001000000011011111101010001110110110111010000100011101001100000100010010000011000000?????0000110010011111000????????????????????????????????????????????1???????????????????????????010000?????????????????????1????????????????????????0?0100001001111100000???111010010001111111000 Allopectus_peruvianus 000101001011101110110010011111000001001001000000000000110111110010100011101111101110100001000111000011000001000100000000110000001100100001110100111110100100101001000000001000000100100100000000000011101001000100110100100101000100100101010000111000001001000100110001101000011101010100001001111100000111111010010101101111000 Columnea_angustata_1433 00010110101110111000101101111000?????010??0000000000001101111000101000111011011011101000000???110000110000010001001????111000000110010000111???????????0000010???000010000101?????????????????????0001001010001100110101100000101100000001010000111000011001000100110011101001111101001101001001111100000?11111000010011101111000 Columnea_angustata_2126 000101101011101110001011011110000000001001000000000000110111100010100011101101101110100000000111000011000001000100100001110000001100100001110100111110100000101000000100001010000100100100000000000001001010001100110101100000101100000001010000111000011001000100110011101001111101001101001001111100000011111000010011101111000 Columnea_angustata_2247 00010110101110111000101101111000000000100100000000000011011110001010001110110110111010000000011100001100000100010010000111000000110010000111010011111010000010???000000000101?????????????????????0001001010001100110101100000101100000001010000111000011001000100110011101000111101001101001001111100000011111000010011101111000 Columnea_angustata_2248 00010110101110111000101101111000000000100?0000000000001101111000101000111011011011101000000???11000011000001000100100001110000001100100001110100111110100000101000000100001010000100100100000000000001001010001100110101100000101100000001010000111000011001000100110011101001111101001101001001111100000011111000010011101111000 Columnea_brysina_1505 000101010011011110011010011010000000001000000001000000010111110010100011101101101110000011000111000011000001000100100000010000011100110000110101011100101001111100000000001010000000100100000?????0001001011001000110100110100100100010101010000010000101001000100110000101100111111000100000011111100000011111000010011101111100 Columnea_brysina_4451 000101010011011110011010011010000000001000000001000000010111110010100011101101101110000011000111000011000001000100100000010000011100110000110101011100111001111100000000001010000000100100000?????0001001011001000110100110100100100010101010000010000101001000100110000101100111111000100000011111100000011111000010011001111100 Columnea_colombiana 0001010010110001100010100111100000000010010000010000001101111100101100111011011011101000110001110000110000010001000000001100000111001000101101001111001010001011000000000010100001001001001000000000010010110011001101001001001001000001010100000100000010010001001100001010001111110001000000011111000000111110000100?1101111000 Columnea_crassicaulis ?0?10100?0111011100110101?1110000000111001000000000000110001110010100011101101101110100001001110000011000001000100100000110000011100?0001111????10111010000010???000?00000101?????????????????????00010000110011?0110100100100100100001101110000111000001001000100110001100010111101000100001001111000000?111110101100?1101111001 Columnea_densibracteata 010111001001101100011010011100000000001001000000100010110111110010100111101101101110100001000111000011001101000100100000110000001100101001110100111100100000101000000010001000000100100100001000010001001011001100110000100110100100000101000001101000001001000000110001101000100101000110011001101100010011???010010001101111000 Columnea_inconspicua 000101001011101110011010011110000000001001000000001000111110110010000010101101101111100001100111000011000001000101100100110000001100100011110100111110100000001010000000101010000100010100000000101001001011111101110100000100100010000101011000111001001001000100010001101000111001100100001101111101000001111010010001101111000 Columnea_isernii 0001010010111011100100100111100000000010??0000000000001001111100101000111011011001001000010???1100001100000100011010000011000000110010000111010011111010000010???0000000001100000100100100000?????0011001011001100110100100100100100000101010000111010001001000101110001111000111101000100001001111100000011111110010001101110000 Columnea_lavandulacea 101101001011101110011010001110000000111001000000000000110101110010100011101101101110101001001110000001000001000100100000110000011100000011111100101110100000100000001000001010000101100100000000000001000111001110100100100100100100001101110000111000001001000100100001100010111101000100001001111000000011111010010010101111000 Columnea_manabiana 000101001011101110011010011110010000001101001000000000111110110010000010101101101111100001100111000111000001000101100100110000001100100011110110111010100000001010000000101000000100110100000???1?1001001011111100110100100100100110000101011000111001001001000100010001101000111001100100001001111101000011111010010001101111000 Columnea_mira 00010100101110111001????????????????????01?????????00011011111011010001100110110111????????0????000011000??????????????????00000110010000111010011111010000010100000000000100000010010???????000000001001011001100110100100100100100000101010000101000001001000100110001101000111101000110001001111100?00?10111010010001101111000 Columnea_moesta 101100001011101110010010001110000000111001000000000000110101110010100011101100101110100001001110000011100011000000100010101010001100000001110100101110100000100000001000001000000101100110000010000001000011001110110100100100100100000101110000111000001001100100110001100000111101000100001001111000000011111110010001100101000 Columnea_nervosa 000101001011101110010010011110000000001001????000000001001111100101000111011011011001000010001??0000110000010001101????????00000110010000111???????????0000010???0000000001000000100100100000100000011001011001100110110100100100100?00101010000111?????????????????????111000111101000100001001111100000011???01001?001101111000 Columnea_oblongifolia_1721 00010100101110111011001001111000000000110100000000000011011111001010001111110110111010010100011110001000010100010010000011000000110010000111010011111010001010100000000000100000010010010000000000???11010010001000101001001011001001001000100001110000010010001001100011010001111000101000010011111000010111110100?0101101011010 Columnea_oblongifolia_1725 0001010010111011101100100111100000000011010000000000001101111100101000111111011011101000010001111000100001010001001000001100000011001000011101001111101000101010000000000010000001001001000000000000111010010001001101001001011001001001010100001110000010010101001100011010001111000101000010011111000010111110100?0001101011010 Columnea_orientandina ?0010100?011???11001101001101000000000100100000100000011011111001110001110110110111010001100011100001100000100010010000011000000???0?0000011????111100101000101100000000001011000100100100010000000101001011001100110100100100100100000101010000010000001101000100110000101100111111000100000011111100000011111010010001101111000 Columnea_ovatifolia 00110100101110101001101000111000000011100100000000000011010111001010001110110111111010000100111000101100000100010010000011000000110000001111010010111010000010000000?000001010000101100100000000000001000011001110110100100100100100000101110000111000000001000100110001100010111101000100001001111100000011111010110001101101001 Columnea_rileyi 10110100101110111001101000111000000011100100000000000011010111001010001110110110111010000100111?0000110000010001001????011000000110000001111????1?111010000010???0001000001010000101100100000000000001000011001110110100100100100100001101110000111000001001000110110001100010111101000100001001110000000011111010010011101101000 Columnea_schiedeana 000101001010101010001010011110100000001011000000110110110111110010100011101101101110100001000111000011000101010100100000110001101100100101110100110110100000101000000000001000000100101100000000000001001011001100110100100100100100000111010100101000001001000100111001101000111101000100001001111110000011???010010001101111000 Columnea_spathulata_1221 ?0010100101110111011101101111000??????10??00000000000011011111000010001110110110111010000100??110000110000010001001????????00000?????0001111???????????0??????????????????????????????0100000????????1001010001100110100100100110101000101010000111?????????????????????????????????000101000001111100000011111000010011101111000 Columnea_spathulata_1853 00010100101110111011101101111000000000100100000000000011011111000010001110110110111010000100011100001100000100010010?000110000001101100011110100111110100000101000000000001000011100100100000001000001001010001100110100100100110101000101010000111000011001000100110001001000111101000101000001111100000011111000010011101111000 Columnea_spathulata_1960 0001010010111011101110110111100000000010010000000000001101111100001000111011011011101000010?0111000011000001000100101000110000001101100011110100111110100000101000000000001000011100100100000001000001001010001100110100100100110101000101010000111000011001000100110001001000111101000101000001111100000011111000010011101111000 Columnea_spathulata_2229 0001010010111011101110110111100000000010010000000000001101111100001000111011011011101000010?0111000011000001000100101000110000001101100011110100111110100000101000000000001000011100100100000001000001001010001100110100100100110101000101010000111000011001000100110001001000111101000101000001011100000011011000010011101111000 Columnea_spathulata_5398 ?0010100101110111011101101111000000000100100000000000011011111000010001110110110111010000100011100001100000100010010?00011000000?????0001111???????????000001010000000000010?00?1100100100000001000001001010001100110100100100110101000101010000111000011001000100110001001000111101000101000001111100000011111000010011101111000 Columnea_strigos_1220 00010100101110111001001001111000000000100100000000000011011111001010101110110110111010000100011100001100000110110010000011000010110010001111010011111010000010100001000001100000??????0100000?????00010010110011001101001001001001000001010100001110000010000001001101001010001111010000000010011111000000111110000?1001111111000 Columnea_strigos_1927 0001010010111011100101100111100000000010010000000000001101111100101010111010011011101000010001110000110000011001001000001100001011001000111101001111101000001010000100010010000001001001000000000000010010010011001101001001001001000001010100001110000010000001001100001010001111010000000010011111000000111110000?1001111111000 Columnea_strigosa_1201 0001010010111011100100100111100000000010010000000000001101111100101010111011011011101000010001110000110000011011001000001100001011001000111101001111101000001010000100000110000001001001000000000000010010110011001101001001001001000001010100001110000010000001001100001010001111010000000010011111000000111110000?1001111111000 Columnea_strigosa_1849 0001010010111011100101100111100000000010010000000000001101111100101010111011011011101000010001110000110000011001001000001100001011001000111101001111101000001010000100010010000001001001000000000000010010010011001101001001001001000001010100001110000010000001001100001010001111010000000010011111000000111110000?1001111111000 Columnea_trollii_1723 00010100101110111011001001111000000000100100000000000011011111001010001110110100111010000100011100001100000100010010000010000010011010000111010011111110000010100000000000000000010010010100000000001010100100010011010010110110????100101010000111000001001000100110001101000011101010100001001111100100011110010010001101011000 Columnea_trollii_1830 0001010010111011101100100111100000000010010000000000001101111100101000111011010011101000010001110000110000010001001????010000010011010000111010011111110000010100000000000000000010010010100000000001010100100010011010010110110010010010101000011100000100100010011000110100001110101010000100111110010001111?01001?001101011000 Columnea_ultraviolacea 10110000101110111001001000111000000011100100000000000011010111001010001110110010111010000100111?000011100011000000100010111010001000000001110100101110100000100000001000001000000101100110000010000001000011001110110100100100100100000101110000111000001001100100110001100000111101000100001001111000000011111110010101100101000 Drymonia_stenophylla 01000100111110110111000011011000001000100110010000000011011101001010000110010110101011000101000100001101000000010011000011010000110010000101000011111010000010100010000000100010011010000000000000001111101100?100111100100101100100100101010010111100001011001100110001101000111101010100101000111100000011101011000001101111000 ; END; BEGIN TREES; TITLE Tb5161; LINK TAXA = Taxa1; TRANSLATE 1 Columnea_strigos_1220, 2 Columnea_strigosa_1201, 3 Columnea_strigosa_1849, 4 Columnea_oblongifolia_1725, 5 Columnea_oblongifolia_1721, 6 Columnea_nervosa, 7 Columnea_isernii, 8 Columnea_mira, 9 Columnea_schiedeana, 10 Columnea_densibracteata, 11 Allopectus_peruvianus, 12 Allopectus_meridensis, 13 Drymonia_stenophylla, 14 Columnea_ultraviolacea, 15 Columnea_spathulata_5398, 16 Columnea_spathulata_1853, 17 Columnea_spathulata_2229, 18 Columnea_spathulata_1221, 19 Columnea_spathulata_1960, 20 Columnea_ovatifolia, 21 Columnea_orientandina, 22 Columnea_moesta, 23 Columnea_manabiana, 24 Columnea_rileyi, 25 Columnea_lavandulacea, 26 Columnea_inconspicua, 27 Columnea_crassicaulis, 28 Columnea_colombiana, 29 Columnea_brysina_1505, 30 Columnea_brysina_4451, 31 Columnea_angustata_2247, 32 Columnea_angustata_2248, 33 Columnea_angustata_1433, 34 Columnea_angustata_2126, 35 Columnea_trollii_1723, 36 Columnea_trollii_1830, 37 Columnea_strigos_1927; TREE Fig._2 = [&R] (13,((12,(((10,9,8),((14,22),((25,27),24),20),((19,18,17,16,15)Columnea_spathulata,((34,33,32),31)Columnea_angustata),(23,26),((21,(30,29)Columnea_brysina),28),((3,37),(2,1))Columnea_strigosa),(6,7))),((5,4)Columnea_oblongifolia,((36,35)Columnea_trollii,11))))Gesneriaceae; END;