#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 26, 2024; 14:18 GMT TreeBASE (cc) 1994-2008 Study reference: Lagreca S. 1999. A phylogenetic evaluation of the Ramalina americana chemotype complex (Ramalinaceae) based on rDNA ITS sequence data. The Bryologist, 102(4): 602-618. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S395] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=24; TAXLABELS Lasallia_papulosa Ramalina_americana_1a Ramalina_americana_1b Ramalina_americana_1c Ramalina_americana_2 Ramalina_americana_3a Ramalina_americana_3b Ramalina_americana_3c Ramalina_americana_3d Ramalina_americana_3e Ramalina_americana_3f Ramalina_americana_4a Ramalina_americana_4b Ramalina_americana_5a Ramalina_americana_5b Ramalina_americana_6a Ramalina_americana_6b Ramalina_americana_7a Ramalina_americana_7b Ramalina_americana_9 Ramalina_fastigiata Ramalina_intermedia Ramalina_paludosa Ramalina_sinensis ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2086] TITLE ITS; LINK TAXA = Taxa1; DIMENSIONS NCHAR=600; FORMAT DATATYPE=Standard SYMBOLS= "@ * 0 1 2 3 4 5 6 7 8 9 A T G C" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Lasallia_papulosa ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CGGCATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCACCCCTCAAGCTCCGCTTGGTGTTGGG?CC??C?CC?G?????T???CC?CCCGGGACGCGCCCGAAAGCGATTGGCGGCGCGGTCCGACTTCGAGCGTAGTAGTGACTCCAAACCCGCTCCGGAAGCCGGCAGGTCCGCCCCGGTCAGACAACCCG?GTTGCACAC???T?TC?GAC???????????????????????????????????????????????????????@37 Ramalina_americana_1a GATCATTAAAGAGAGGGGCTTCGCGCTCCAGGGGACTTCGGTCCCCGCCTCTACACCCTGTGATTACC?TTACCTTTTGTTGCTTTGGCGGGG?AGTC?????????????????????????????????CCCCGCCGGCAGCCCACCGAAACTCGTTTT?ATCCATGCCC?GTCTGAGT?C?C?AATT?CATAA?TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGG?CATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAACCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCATTCAAGCGTAGCTTGGTATTGG?TCCTTCGCCGGGGG??TC?ACC?CCC??GGCGTGCCCGAAAAGCATCGGCGGTCCGGTGT?ACTTTA?GCGTAGTAAATCTT?CT??CCCG?TT?GAAAGCCTCG?ACCGTG?GCCGGCCAGACAACCCCCC????ATA?T?TT??CTCACGATTGACCTCG?ATCAGGT??GGATACCC????????????????????????63602 Ramalina_americana_1b GATCATTAAAGAGAGGGGCTTCGCGCTCCAGGGGACCTCGGTCCCCGCCTCTACACCCTGTGATTACC?TTACCTTTTGTTGCTTTGGCGGGG?AGTC????????????????????????????????T?CCCGCCAGCAGCCCACCGAAACTCGTTTT?ATCCATGCCC?GTCCGAGT?C?C?AATT?CATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGG?CATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCATTCAAGCGTAGCTTGGTATTGGGTCCTTCGCCGGGGG??TC?ACC?CCC??GGCGTGCCCGAAAAGCATTGGCGGTCCGGTGCGACTTTAAGCGTAGTAAATCTT?CT??CCCGCTTTGAAAGCCTCGCACCGTG?GCCGGCCAGACAACCCCCC????ATA?T?TT??CTCACGATTGACCTCGGATCAGGTAGGGATACCCGCTGAACT????????????????73602 Ramalina_americana_1c GATCATTAAAGAGAGGGGCTTCGCGCTCCAGGGGACTTCGGTCCCCGCCTCTACACCCTGTGATTACC?TTACCTTTTGTTGCTTTGGCGGGG?AGTC?????????????????????????????????CCCCGCCAGCAGCCCACCGAAACTCGTTTT?ATCCATGCCC?GTCTGAGT?C?C?AATT?CATAA?TGAATCAAAACTTTCAACAACGGATCTCTT?GTTCTGG?CATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCATTCAAGCGTAGCTTGGTATTGGGTCCTTCGCCGGGGG??TC?ACC?CCC??GGCGTGCCCGAAAAGCATTGGCGGTCCGGTGTGACTTTAAGCGTAGTAAATCTT?CT??CCCGCTTTGAAAGCCTCGCACCGTG?GCCGGCCAGACAACCCCCC????ATA???TT?TCTCACGATTGACCTCGGATCAGGTAGGGATACCCGCTGAA??????????????????63602 Ramalina_americana_2 GATCATTAAAGAGAGGGGCTTCGCGCTCCAGGGGACTTTGGTCCCCGCCTCTACACCCTGTGATTACC?TTACCTTTTGTTGCTTTGGCGGGG?AGTC?????????????????????????????????CCCCGCCAGCAG?CCACCGAAACTCGTTTT?A?CCAT?CCC?GTCCGAGT?C?C?AATT?CAT?A?TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGG?CATCGATGAAGAACG?AGCGA?ATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCATTCAAGCGTAGCTTGGTATTGGGTCCTTCGCCGGGGG??T?GACC?CCC??GGCGA??CCGAAAAGCATTGGCGG?CCGGTGTGACTTTAAGCGTAGTAAATTTT?CT??CCCGCTTTGAAAGCCTCGCACCGTG?GCCGGCCAGACAACCCCCC????ATA?T?TT??CTCACGATTGACCTCGGATCAGGTAGGGATACCCGCTGA???????????????????63502 Ramalina_americana_3a GATCATTACAGAGAGGGGCTTCGCGCTCCAGGGGACTTCGGTCCCCGCCTCTACACCCTGTGATTACC?TTACCTTTTGTTGCTTTGGCGGGGG?GTT????????????????????????????????CCCCCGCCAGCAGCGCACCGAAACTCGTTTTTATTCATGCTT?GTCCGAGT?CAC??ATT?CATAA?TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGG?CATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGAGCATGCCTGTTCGAGCGTCATTGCACCATTCAAGCGTAGCTTGGCATTGGGTCCTTCGCCGGGGG?TT??ACCTCCCC?GGCGTGCCCGAAAAGCATTGGCGGTCCGGTGTGACTTGAAGCGTAGTAAATTTT?CT??CCCGCTTTGCAAGCCTCGCGCCGTG?GCCGGCCAGACAACCCCC?????ATAC??TT??CTCACGATTGACCTCGGATCAGGTAGGGATACCCGCTGAAC?TAAGCATA????????20300 Ramalina_americana_3b GATCATTACAGAGAGGGGCTCCGCGCTCCAGGGGACTTCGGTCCCCGCCTCTACACCCTGTGATTACC?TTACCTTTTGTTGCTTTGGCGGGGG?GTC????????????????????????????????CCCCCGCCAGCAGCCCACCGAAACTCGTTTT?ATTCATGCTT?GTCTGAGT?CAC??ATT?CATAA?TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGG?CATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCATTCAAGCGTAGCTTGGTACTGGGTCCTTCGCCGGGGG??T??ACCTCCCC?GGCGTGCCCGAAAAGCATTGGCGGTCCGGTGTGACTTGAAGCGTAGTAAAATTT?CT??CCCGCTTTGCAAGCCTCGCGCCGTG?GCCGGCCAGACAACCCCC?????ATAC??TT??CTCACGATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAA?00000 Ramalina_americana_3c GATCATTACAGAGAGGGGCTTCGCGCTCCAGGGGACTTCGGTCTCCGCCTCTACACCCTGTGATTACC?TTACCTTTTGTTGCTTTGGCGGGG??GTC????????????????????????????????CCCCCGCCAGCAG?CCACCGAAACTCGTTTT?ATTCATGCTT?GTCTGAGT?CAC??ATT?CATAA?TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGG?CATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCATTCAAGCGTAGCTTGGTATTGGGTCCTTCGCCGGGGG??T??ACCTCCCC?GGCGTGCCCGAAAAGCATTGGCGGTCCGGTGTGACTTGAAGCGTAGTAAATTTT?CT??CCCGCTTTGCAAGCCTCGCGCCGTG?GCCGGCCAGACAACCCCC?????ATAC??TT??CTCACGATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG10000 Ramalina_americana_3d GATCATTACAGAGAGGGGCTTCGCGCTCCAGGGGACTTCGGTCCCCG?CTCTACACCCTGTGATTACC?TTACCTTTTGTTGCTTTGGCGGGGG?GTC????????????????????????????????CCCCCGCCAGCAGCCCACCGAAACTCGATTT?ATTCATGCTT?GTCTGAGT?CAC??ATT?CATAA?TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGG?CATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCATTCAAGCGTAGCTTGGTATTGGGTCCTTCGCCGGGG?C?T??ACCTCCCC?GGCGTGCCCGAAAAGCATTGGCGGTCCGGTGTGACTTGAAGCGTAGTAAATTTT?CT??CCCGCTTTGCAAGCCTCGCGCCGTG?GCCGGCCAGACAACCCCC?????ATAC???T?TCTCACGATTGACCTCGGATCAGGTAGGGATACCCGCTGAA??????????????????00400 Ramalina_americana_3e ??TCATTACAGAGAGGGGCTCCGCGCTCCAGGGGACTTCGGTCCCCGCCTCTACACCCTGTGATTACC?TTACCTTTTGTTGCTTTGGCGGGGG?GTC????????????????????????????????CCCCCGCCAGCAGCCCACCGAAACTCGTTTT?ATTCATGCTT?GTCTGAGT?CAC??ATT?CATAA?TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGG?CATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCATTCAAGCGTAGCTTGGTACTGGGTCCTTCGCCGGGGG??T??ACCTCCCC?GGCGTGCCCGAAAAGCATTGGCGGTCCGGTGTGACTTGAAGCGTAGTAAAATTT?CT??CCCGCTTTGCAAGCCTCGCGCCGTG?GCCGGCCAGACAACCCCC?????ATA???TT??CTCACGATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG00001 Ramalina_americana_3f GATCATTAAAGAGAGGGGCTTCGCGCTCCAGGGGACTTCGGTCCCCGCCTCTACACCCTGTGATTACC?TTACCTTTTGTTGCTTTGGCGGGGG?CTC?????????????????????????????????CCCCGCCAGCAGCCCACCGAAACTCGTTTT?ATTCATGCCT?GTCTGAGT?CAC??ATT?TATAA?TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGG?CATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCATTCAAGCGTAGCTTGGTATTGGGTCCTTCGCCGGGGG??T??ACCTCCCC?GGCGTGCCCGAAAAGCATTGGCGGTCCGGTGTGACTTGAAGCGTAGTAAATTTT?CT??CCCGCTTTGCAAGCCTCGCGCCGTG?GCCGGCCAGACAACCCCC?????ATAC??TT??CTCACGATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATC??????42000 Ramalina_americana_4a GATCATTACAGAGAGGGGCTTCGCGCTCCAGGGGACTTCGGTCCCCGCCTCTACACCCTGTGATTACC?TTACCTTTTGTTGCTTTGGCGGGGG?GTC????????????????????????????????CCCCCGCCAGCAGCCCACCGAAACTCGATTT?ATTCATGCTT?GTCTGAGT?CAC??ATT?CATAA?TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGG?CATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCTTTGCACCATTCAAGCGTAGCTTGGTATTGGGTCCTTCGCCGGGGG??T??ACCTCCCC?GGCGTGCCCGAAAAGCATTGGCGGTCCGGTGTGACTTGAAGCGTAGTAAATTTT?CT??CCCGCTTTGCAAGCCTCGC??????????????????????????????????????????????????????????????????????????????????????????????????0000? Ramalina_americana_4b GATCATTACAGAGAGGG?CTTCGCGCTCCAGGGGACTTCGGTCTCCGCCTCTACACCCTGTGATTACC?TTACCTTTTGTTGCTTTGGCGGGG??GTC????????????????????????????????CCCCCGCCAGCAGCCCACCGAAACTCGTTTT?ATTCATGCTT?GTCTGAGT?CAC??A?T?CATAA?TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGG?CATCGATGAAGAACGCAG?GGAATGCGATAAGTAATGTGAATTACAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCATTCAAGCGTAGCTTGGTA?TGGGTCCTTCGCCGGGGG??T??ACCCCCCC?GG?GTGCCCGAAAAGCATTGGCGGTCCGGTGTGACTTGAAGCGTAGTAAATTTT?CT??CCCGCTTTGCAAGCCTCGCGCCGTG?CCCGGCCAGACAACCCCC?????ATAC??TT??CTCACGATTGACCTCGGATCAGGTAGGGATACCC????????????????????????10200 Ramalina_americana_5a GATCATTACAGAGAGGGGCTTCGCGCTCCAGGGGACTTCGGTCCCCGCCTCTACACCCTGTGATTACC?TTACCTTTTGTTGCTTTGGCGGGGG?GTC????????????????????????????????CCCCCGCCAGCAGCCCACCGAAACTCGATTT?ATTCATGCTT?GTCTGAGTT?AC??ATT?CATAA?TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGG?CATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCATTCAAGCGTAGCTTGGTACTGGGTCCCTCGCCGGGGG??T?G?CCTCCCC?GGCGTGCCCGAAAAGCATTGGCGGTCCGGTGTGACTTGAAGCGTAGTAAATTTT?CT??CCCGCTTTGCAAGCCTCGCGCCGCG?GCCGGCCAGACAACCCCC?????ATAC??TT??CTCACGATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATA????????01100 Ramalina_americana_5b ??TCATTAAAGAGAGGGGCTTCGCGCTCCAGGGGACTTCGGTCCCCGCCTCTACACCCTGTGATTACC?TTACCTTTTGTTGCTTTGGCGGG???GTC?????????????????????????????????CCCCGCCAGCAGCCCCCCGAAACTCGTTTT?ATTCGTGCCT?GTCTGAGT?CAC??ATT?CATAA?TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGG?CATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCATTCAAGCGTAGCTTGGTATTGGGTCCTTCGCCGGGGG??T??ACCTCCCC?GG?GTGCCCGAAAAGCATTGGCGGTCCGGTGTGACTTGAAGCGTAGTAAATTTT?CT??CCCGCTTTGCAAGCCTCGCGCCGTG?GCCGGCCAGACAACCCCC?????ATAC??TT??CTCACGATTGACCTCGGATCAGGTAGGGATACCCGCTGAACT????????????????30000 Ramalina_americana_6a GATCATTACAGAGAGGGGCTTCGCGCTCCAGGGGACTTCGGTCTCCGCCTCTACACCCTGTGATTACC?TTACCTTTTGTTGCTTTGGCGGGGG?GTC????????????????????????????????CCCCCGCCAGCAGCCCACCGAAACTCGTTTT?ATTCATGCCT?GTCTGAGT?CAC??ATT?CATAA?TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGG?CATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCATTCAAGCGTAGCTTGGTATTGGGTCCTTCGCCGGGGG?TT??ACCTCCCC?GGCGTGCCCGAAAAGCATTGGCGGTCCGGTGTGACTTGAAGCGTAGTAAATTCT?CT??CCCGCTTTGCAAGCCTCGCGCCGTG??CCGGCCAGACAACCCCC?????ATA???TT??CTCACGATTGACCTCGGATCAGGTAGGGATACCC????????????????????????00301 Ramalina_americana_6b GATCATTACAGAGAGGGGCTTCGCGCTCCAGGGGACTTCGGTCCCCGCCTCTACACCCTGTGATTACC?TTACCTTTTGTTGCTTTGGCGGGGG?GCC????????????????????????????????CCCCCGCCAGCAGCCCATCGAAACTCGTTTT?ATTCATGCTT?GTCTGAGT?CAC??ATT?CATAA?TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGG?CATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCATTCAAGCGTAGCTTGGTATTGGGTCCTTCGCCGGGGG??T??ACCTCCCC?GGCGTGCCCGAAAAGCATTGGCGGTCCGGTGTGACTTGAAGCGTAGTAAATTTT?CT??CCCGCTTTGCAAGCCTCGCGCCGTG?GCCGGCCAGACAACCCCC?????ATAC??TT??CTCACGATTGACCTCGGATCAGGTAGGGATACCCGCTGAA??????????????????50000 Ramalina_americana_7a GATCATTACAGAGAGGGGCTTCGCGCTCCAGGGGACTTCGGTCCCCGCCTCTACACCCTGTGATTACC?TTACCTTTTGTTGCTTTGGCGGGGG?GTC????????????????????????????????CCCCCGCCAGCAGCCCACCGAAACTCGCTTT?ATTTATGCTT?GTCTGAGT?CAC??ATT?CATAA?CGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGG?CATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCATTCAAGCGTAGCTTGGTATTGGGTCCTTCGCCGGGGG??T??ACCTCCCC?GGCGTGCCCGAAAAGCATTGGCGGTCCGGTGTGACTTGAAGCGTAG?AAATTTT?CT??CCCGCTTTG?AAGCCTCGGGCCGTG?GCCGGCCAGACAACCCCC?????ATA???TT??CTCACGATTGACCTCGGATCAGGTAGGGATACCCGCTGAAC?TAAGCATATCAATAA?00001 Ramalina_americana_7b ???CATTACAGAGAGGGGCTTCGCGCTCCAGGGGACTTCGGTCTCCGCCTCTAAACCCTGTGATTACC?TTACCTTTTGTTGCTTTGGCGGGGG?GTC????????????????????????????????CCCCCGCCAGCAGCCCACCGAAACTCGTTTT?ATCCATGCTT?GTCTGAGT?CAC??ATT?CATAA?TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGG?CATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCATTCAAGCGTAGCTTGGTATTGGGCCCTTCGCCGGGGG?TT??ACCTCCCC?GGCGTGCCCGAAAAGCATTGGCGGTCCGGTGCGACTTGAAGCGTAGTAAATTTT?CT??CCCGCTTTGCAAGCCTCGCGCCGTG??CCGGCCAG?CAACCCCC?????ATAC??TT??CTCACGATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA?????????????00300 Ramalina_americana_9 GATCATTAAAGAGAGGGGCTTCGCGCTCCAGGGGACTTCGGTCCCCGCCTCTACACCCTGTGATTACC?TTACCTTTTGTTGCTTTGGCGGGG?AGTC?????????????????????????????????CCCCGCCAGCAGCCCACCGAAACTCGTTTT?ATCCATGCCC?GTCTGAGT?C?C?AATT?CATAA?TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGG?CATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCGTTCAAGCGTAGCTTGGTATTGGGTCCTTCGCCGGGGG??TC?ACC?CCC??GGCGTGCCCGAAAAGCATTGGCGGTCCGGTGTGACTTTAAGCGTAGTAAATCTT?CT??CCCGCTTTGAAA?CCTCGCACCGTG?GCCGGCCAGACAACCCCCC????ATA?T?TT??CTCACGATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATA????????63602 Ramalina_fastigiata ??TCATTAAAGAGAGGGGCTTCGCGCTCCAGGGGATTCCGGTCCCCGCCTCTACACCCTGTGATTAC?GTTACCCTTTGTTGCTTTGGCGGGGG?????????????????????????????????CACTCCCCGCCAGCAGCCCACCGAAACTCGTTTT?ATCCATGTTC?GTCCGAGT?C??TAATT?CATAA?TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGG?CATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCACTCAAGCGTAGCTTGGTATTGGGTCCATCGCCCGGG??ATC?TCC?CCGC?GGCGTGCCCGAAAAGCATTGGCGGTCCGGTGTGACTTTAAGCGTAGTAAATTTT?CT??CCCGCTTTGAAAGCCTCACGCCGTG?GCCGGCCAGACAACCCCC?????ACA?TATTA??TCACGATTGACCTCGGATCAGGTAGGGATACCCGCTGAACTT???????????????95804 Ramalina_intermedia GATCATTAAAGAGAGGGACTTCGCGCCCCAGGGGACTCCGGTCCCCGCCTCTACACCCTGTGATTACC?TTACCTTTTGTTGCTTTGGCGGGG?AGTC?????????????????????????????????CCCCGCCAGCAGCCCACCGAAACTCGTTTT?ATCCATACACTGTCCGAGTA???TAATT?CATAA?TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCATTCAAGCGTAGCTTGGTATTGGGTCCTTCGCCGGGGG??T??AC?TCCCC?GGGGTGCCCGAAAAGCATTG?CGGTCCGGTGTGACT?TAAGCGTAGTAAATCTT?CT??CCCGCTTTGAAAGCCTCGCACCGTG?GCCGGCCAGACAACCCCC?????A???TATT?TCTCACGATCGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA?????????????84703 Ramalina_paludosa GATCATTAAAGAGAGGGGC?TCGCGCTCCTGGGGACTCCGG?CCCCGCCTCTACACCCGATGATTACCGT?ACCACTTGTTGCTTTGGCGGGG???TC?????????????????????????????????CCCCGCCAGCAGCCCACCAACAC?GCATCTTATTCATGCCC?GTCTGAGTA?TC??ATT?CATAA?TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGG?CATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGG?ATGCCTGTTCGAGCGTCATTGCACCACTCAAGCGTAGCTTGGTATTGGGTTC?TCGCCGGGGGCA???TCC?CCC??GGCGTGCCCGAAACGCATTGGCGGTCCGGTGTGACTTTAAGCGTAGTAAATTTT?CC??CCCGCTTTGAAAGCCTCGTACCGCG?G?CGGCCAGACAACCCCCG???????????TATCTCACGATTGACCTCGGATCAGGTA?????????????????????????????????36915 Ramalina_sinensis GATCATTAAAGAGAGGGG?CCTGCGCCCCTGGGGACTCCGGTCCCCGCCTCTATACCCTGTGATTATC?TTACCTTTTGTTGCTTTGGCGGGA?AGCCGGCCCCCGGGTCGGTTGGTCCGCAGGGATCACT??TCGCCAGCAGCCCACCGAAACTCGTTTT?ATGCGTGCCA?GTCTGAGT?C?C?AATTTTATAA?TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTG??CATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTGCACCACTCAAGCGTAGCTTGGTATTGGGTTCTTCGCCCGGGG??TC?TCC??CGC?GGCGTGCCCGAAAAGCATTGGCGGTCCGGAGCGACTTTAAGCGTAGTAAATTTTTCT??CCCGCTTCGAAAGCCTCGCCCCGGG?TCCGGCCAGACAACCCCC?????ACA?TAT?ATCTCACGATTGACCTCGGATCAGGTAGG???????????????????????????????*7*26 ; END; BEGIN SETS; CHARSET nonITS (CHARACTERS = ITS) = 1-8 204-362 544-595; CHARSET inform (CHARACTERS = ITS) = 369 387 393 401 451 457 470-472 486 488 498 502 505 596-598 600 9 21 27 30 38 44 158 165 167 171-172 177; CHARSET recodes (CHARACTERS = ITS) = 93-134 182-192 405-419 474-479 521-540; END; BEGIN ASSUMPTIONS; WTSET * saved = 1: 1-600 ; WTSET saved = 1: 1-600 ; END; BEGIN TREES; TITLE Tb5244; LINK TAXA = Taxa1; TRANSLATE 1 Lasallia_papulosa, 2 Ramalina_sinensis, 3 Ramalina_paludosa, 4 Ramalina_fastigiata, 5 Ramalina_intermedia, 6 Ramalina_americana_1c, 7 Ramalina_americana_1b, 8 Ramalina_americana_1a, 9 Ramalina_americana_9, 10 Ramalina_americana_2, 11 Ramalina_americana_3d, 12 Ramalina_americana_6b, 13 Ramalina_americana_3c, 14 Ramalina_americana_3b, 15 Ramalina_americana_3f, 16 Ramalina_americana_5b, 17 Ramalina_americana_3a, 18 Ramalina_americana_7b, 19 Ramalina_americana_7a, 20 Ramalina_americana_6a, 21 Ramalina_americana_4b, 22 Ramalina_americana_3e, 23 Ramalina_americana_5a, 24 Ramalina_americana_4a; TREE Fig._5 = [&R] ((((((((((24,23),11),((22,14),19),((20,18),17)),(21,13)),12),16,15)Ramalina_culbersoniorum,(((10,((9,8,6),7))Ramalina_americana,5),4)),3),2)Ramalina,1); TREE Fig._4 = [&R] ((((((24,23,22,21,20,19,18,17,16,15,14,13,12,11)Ramalina_culbersoniorum,(10,9,8,7,6,5)),4),3),2)Ramalina,1); END;