#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on March 29, 2024; 6:42 GMT TreeBASE (cc) 1994-2008 Study reference: Hugot J. 1999. Primates and their pinworm parasites: the Cameron hypothesis revisited. Systematic Biology, 48(3): 523-546. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S606] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=50; TAXLABELS Cal._blanci Cal._brygooi Ctenodatctylina_tunaetae Enterobius_anthropopitheci Enterobius_bipapillatus Enterobius_brevicauda Enterobius_buckleyi Enterobius_colobis Enterobius_entellus Enterobius_gregorii Enterobius_guerezae Enterobius_inglisi Enterobius_lerouxi Enterobius_longispiculum Enterobius_macaci Enterobius_paraguerezae Enterobius_pesteri Enterobius_pitheci Enterobius_presbytis Enterobius_vermicularis Enterobius_zakiri Inglisoxyuris_inglisi Lemuricola_baltazardi Lemuricola_bauchotis Lemuricola_contagiosus Lemuricola_daubentoniae Lemuricola_lemuris Lemuricola_microcebi Lemuricola_nycticebi Lemuricola_trichuroides Lemuricola_vauceli Trypanoxyuris_atelis Trypanoxyuris_bicristata Trypanoxyuris_brachytelesis Trypanoxyuris_callicebi Trypanoxyuris_callithricis Trypanoxyuris_clemenentinae Trypanoxyuris_croizati Trypanoxyuris_duplicidens Trypanoxyuris_goeldii Trypanoxyuris_lagothricis Trypanoxyuris_microon Trypanoxyuris_minutus Trypanoxyuris_oedipi Trypanoxyuris_satanas Trypanoxyuris_sceleratus Trypanoxyuris_sciuri Trypanoxyuris_tamarini Trypanoxyuris_trypanuris Xeroxyuris_parallela ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2585] TITLE Table_1; LINK TAXA = Taxa1; DIMENSIONS NCHAR=45; FORMAT DATATYPE=Standard SYMBOLS= "0 1 2 3 4 5 6 7" MISSING=? GAP= -; CHARSTATELABELS 1 Diaphrg. / abst pst, 2 Sprmthc / present absent, 3 GenTract / prodelphic amphidelphic, 4 Vagina / 'abst->1.2 vgct- rct' '>1.2 vgct- *' '>1.2 vgct+ rct' '>1.2 vgct+ rct lg' '<1.2 vm', 5 ARug / 'pharyng-generalised' inglox 'V crest >3rd' 'U crest >3rd' V_crest_æ_p_3rd tamarini, 6 Cloc_opng / gnrlsd Yshpd prtdg 'Pharyngo+', 7 BrsCd_1 / 'Pharyngo+' 'Inglis+' 'Ent+', 8 BrsCd_2 / 'Ent+p1+' 'Ent+p1+bbl' 'Ent+p1-' 'Ent+p1-phsmd', 9 BrsCd_3 / abst 2d 2d_and_3rd linked extd_lat cone btrfl_shpd, 10 BrsCd_4 / '2d 3rd § - leaf' '2d 3rd § + leaf' '2d 3rd § + lsg', 11 Spcl_Mn / thin thick_sphr thick_sphr_bos thick_mass thck_rctgl tck_verm, 12 Spcl_Cps_1 / feebly_curved rectlgn dble_bowed flexible, 13 Spcl_Cps_2 / 'flex <250' flex_Ñ250, 14 Spcl_Pt / sharp_point round_point hooked_point thin_point angled, 15 Tip_tail / absent atrophied present short long, 16 Amphd / 'ped-' 'ped+', 17 CepPlt1 / circular hexagonal rectangular square, 18 CepPlt2 / hexg_reg hexg_irrg '+ slot', 19 CepVes / generalised thick 1st_ring_thick striation_accentuated, 20 Bucc_aprt / 6_lips 3_lips_gnrl 3_lips_rdcd 2_lips, 21 Lips_1 / edge_rnd edge_rnd_rdce 'horse shoe-shaped' thickened lob dors_hztl stuck_teeth, 22 Lips_2 / sym_cal sym_try as_mic as_min, 23 TthApx_1_2 / rnd_smpl rnd_3_dtc flat 'articulated + superstrc' dors_reduced dors_atrphd lemur_type entero_type, 24 TthApx_2 / flat_pent flat_ê, 25 TthApx_3 / mushrm blades, 26 TthApx_4 / msrm_smpl msrm_1_dtcl, 27 TthApx_4_2 / bld_lrge bld_shrt, 28 Ospg_Blb / smg_abst smshg_pst 'opg.blb<3,15MF', 29 FLw_1 / abst_in_F pst_æ_blb 'pst > blb', 30 FLw_2 / pst_æ_blb_êê pst_æ_blb_Y pst_æ_blb_U, 31 FLw_3 / 'pst > blb crvc-' 'pst > blb crvc+', 32 FLw_4 / ê U, 33 FLw_5 / ê_2_crest ê_2_crests_distant ê_2_crests_rdtd, 34 FLw_6 / ê_2_crests_rdtd ê_2_crests_fus, 35 FLw_7 / U_2_crests_devlp U_2_crests_atr U_1_crest_atel, 36 FLw_8 / ê_1_crest ê_2_crests_gde U_1_crest_colob_1 U_1_crest_colob_2 Y_xero, 37 Egg_1 / 'emb+' 'emb-', 38 Egg_2 / 'emb-sharp' 'emb-rd', 39 Egg_3 / 'emb-rd thin' 'emb-rd thick', 40 Egg_2_1_thin / symm asymm_flat, 41 Egg_3_1_thick / sym asymm_cvx asymm_flat, 42 Egg_2_2_thin / Legg_Ñ80 'Legg <80 >60' Legg_æ60, 43 Egg_3_2_thick_2 / 'LÑ70 BL<100' 'L<70 Ñ50 BL<100' 'L<70 Ñ45 BL>100' 'L<45 BL>100', 44 Egg_3_3_thick / 'BL>100 <115' 'BL>115 <175' 'BL>175', 45 Egg_3_4_thick / 'BL<100 LÑ45' 'BL>100 LÑ45' 'BL>100 L<45', ; MATRIX [ 10 20 30 40 ] [ . . . . ] Cal._blanci 000-030-0-00-0010-000-0----00-------0-------- Cal._brygooi 000-030-0-00-0010-000-0----00-------0-------- Ctenodatctylina_tunaetae 000-030-0-00-0010-000-0----00-------0-------- Enterobius_anthropopitheci 111200223112-10012011-7----12-1----{01}111-1--0- Enterobius_bipapillatus 111200223242-40012010-7----12-1----1111-1--1- Enterobius_brevicauda 111200223042-40012010-7----12-1----1111-1--1- Enterobius_buckleyi 111200223?52-10012010-??---1?????-??111-1--1- Enterobius_colobis 111200223010-01012312-3-00-12-1----2111-2---2 Enterobius_entellus 111300223003000012310-3-1-112-1----3111???-?? Enterobius_gregorii 111200223112-20012011-7----12-1----0111-1--2- Enterobius_guerezae 111200223010-01012312-3-01-12-1----2111-2---0 Enterobius_inglisi 111?00223010-00012312-3-00-12-1----?111-2---0 Enterobius_lerouxi 111200223?52-10012010-??---1???----0111-1--0- Enterobius_longispiculum 111300223003100012310-3-1-012-1----3111-2---1 Enterobius_macaci 111200223242-40012010-7----12-1----1111-1--1- Enterobius_paraguerezae 111200223010-01012312-3-01-12-1----2111-2---0 Enterobius_pesteri 111?00223010-00012312-3-00-12-1??-??111-2---1 Enterobius_pitheci 1113?0?????????012310-3-1-012-1----3???-2---1 Enterobius_presbytis 111300223003000012310-3-1-112-1----3111-2---2 Enterobius_vermicularis 111200223152-20012011-7----12-1----0111-1--2- Enterobius_zakiri 111300223003100012310-3-1-112-1----3111-2---2 Inglisoxyuris_inglisi 000-101-0-10-0010-000-0----11?------0-------- Lemuricola_baltazardi 111131205-40-0000-013-6----111------1101-1--- Lemuricola_bauchotis 111131204-10-0100-013-6----111------1101-2--- Lemuricola_contagiosus 111020214-30-0400-010-0----110------1100----- Lemuricola_daubentoniae 111121204-30-0100-013-0----110------1101-1--- Lemuricola_lemuris 111131205-40-0000-013-6----111------1101-2--- Lemuricola_microcebi 111020216-30-0400-010-0----110------1100----- Lemuricola_nycticebi 111020206-30-0300-013-0----112------1101-0--- Lemuricola_trichuroides 1111???????????00-013-6----111-??-??1101-0--- Lemuricola_vauceli 111131205-40-0000-013-6----111------1101-1--- Trypanoxyuris_atelis 111400221-10-0202-236-5----12-01--2-111-0-3-- Trypanoxyuris_bicristata 111400221-21-32010015-0----12-0021--111-0-1-- Trypanoxyuris_brachytelesis 1114???????????02-236-5----1???1--2-???-0-2-- Trypanoxyuris_callicebi 1114???????????011014021---12-000---??1-0-2-- Trypanoxyuris_callithricis 111440221-21-3203-025-0----22-0021--111-0-0-- Trypanoxyuris_clemenentinae 1114???????????03-125-1----12-001---??1-0-2-- Trypanoxyuris_croizati 111400221-10-12011014021---12-000---111-0-3-- Trypanoxyuris_duplicidens 11140022??10-0102-236-4----12-01--2-111-0-3-- Trypanoxyuris_goeldii 111440231-20-0203-025-0----22-0020--111-0-0-- Trypanoxyuris_lagothricis 11140022??10-0202-236-4----12-01--2-111-0-3-- Trypanoxyuris_microon 111400221-10-02010014220---12-000---111-0-3-- Trypanoxyuris_minutus 111400221-10-1202-21434----12-01--0-111-0-3-- Trypanoxyuris_oedipi 111440231-20-3203-025-0----22-0020--111-0-0-- Trypanoxyuris_satanas 111400221-10-13011214120---12-01--1-111-0-2-- Trypanoxyuris_sceleratus 111400221-11-02010125-1----12-001---111-0-2-- Trypanoxyuris_sciuri 111400221-21-32010015-0----12-0020--111-0-1-- Trypanoxyuris_tamarini 111450221-11-0203-025-0----22-0020--111-0-0-- Trypanoxyuris_trypanuris 111400221-10-13011214120---12-01--1-111-0-2-- Xeroxyuris_parallela 110002202-10-00010010-0----12-1----410------- ; END; BEGIN ASSUMPTIONS; WTSET W1 = 1000: 1-3 9 12 14 18-19 25 , 500: 16 , 750: 15 , 1: 4-8 10-11 13 17 20-24 26-45 ; END; BEGIN TREES; TITLE Tb5670; LINK TAXA = Taxa1; TRANSLATE 1 Xeroxyuris_parallela, 2 Trypanoxyuris_trypanuris, 3 Trypanoxyuris_satanas, 4 Trypanoxyuris_minutus, 5 Trypanoxyuris_microon, 6 Trypanoxyuris_croizati, 7 Trypanoxyuris_sceleratus, 8 Trypanoxyuris_clemenentinae, 9 Trypanoxyuris_callicebi, 10 Trypanoxyuris_sciuri, 11 Trypanoxyuris_bicristata, 12 Lemuricola_nycticebi, 13 Trypanoxyuris_duplicidens, 14 Trypanoxyuris_lagothricis, 15 Trypanoxyuris_brachytelesis, 16 Trypanoxyuris_atelis, 17 Lemuricola_microcebi, 18 Lemuricola_contagiosus, 19 Lemuricola_vauceli, 20 Lemuricola_lemuris, 21 Lemuricola_daubentoniae, 22 Lemuricola_bauchotis, 23 Lemuricola_baltazardi, 24 Trypanoxyuris_tamarini, 25 Trypanoxyuris_oedipi, 26 Trypanoxyuris_goeldii, 27 Trypanoxyuris_callithricis, 28 Enterobius_vermicularis, 29 Enterobius_macaci, 30 Enterobius_lerouxi, 31 Enterobius_gregorii, 32 Enterobius_buckleyi, 33 Enterobius_brevicauda, 34 Enterobius_bipapillatus, 35 Enterobius_anthropopitheci, 36 Enterobius_zakiri, 37 Enterobius_presbytis, 38 Enterobius_pitheci, 39 Enterobius_pesteri, 40 Enterobius_paraguerezae, 41 Enterobius_longispiculum, 42 Enterobius_inglisi, 43 Enterobius_guerezae, 44 Enterobius_entellus, 45 Enterobius_colobis, 46 Lemuricola_trichuroides, 47 Inglisoxyuris_inglisi, 48 Cal._blanci, 49 Cal._brygooi, 50 Ctenodatctylina_tunaetae; TREE Fig._1 = [&R] (50,(47,(1,(((18,17),(12,(21,(46,(22,(20,(23,19)))))))Lemuricola,((((35,(31,28)),(30,(32,(33,(34,29))))),((39,(42,(45,(43,40)))),(41,38,(36,(44,37)))))Enterobius,(((11,10),((8,7),(24,(27,(26,25))))),(5,((9,6),((3,2),(4,(14,13,(16,15)))))))Trypanoxyuris)))Enterobiinae)); TREE strict = [&R] (50,(49,48,(47,(1,(((18,17),(12,(21,(46,(22,(20,(23,19))))))),((((35,(31,28)),(30,(32,(33,(34,29))))),((39,(42,(45,(43,40)))),((36,(44,37)),41,38))),(((11,10),((8,7),(24,(27,(26,25))))),(5,((9,6),((3,2),(4,((16,15),14,13)))))))))))); END;