#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 19, 2024; 21:52 GMT TreeBASE (cc) 1994-2008 Study reference: Bell C., Patterson R., & Hamilton L. 1999. Sectional intergrety in Linanthus (Polemoniaceae): a molecular phylogeny of section Dianthoides. Systematic Botany, 24: 632-644. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S614] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=28; TAXLABELS Gilia_filiformis Gilia_maculata Leptodactylon_pungens Leptodactylon_watsonii Linanthus_arenicola Linanthus_bellus Linanthus_bigelovii Linanthus_ciliatus Linanthus_concinnus Linanthus_demissus Linanthus_dianthiflorus Linanthus_dichotomus Linanthus_grandiflorus Linanthus_killipii Linanthus_lemmonii Linanthus_liniflorus Linanthus_nudatus Linanthus_nuttallii Linanthus_orcuttii Linanthus_pachyphyllus Linanthus_parryae Linanthus_uncialis Phlox_gracilis Phlox_hoodii Phlox_stansburyi Polemonium_pauciflorum Polemonium_pulcherrimum Polemonium_visccosum ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3929] TITLE ITS1&2; LINK TAXA = Taxa1; DIMENSIONS NCHAR=483; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= :; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Gilia_filiformis TCGAAACCTGCTTAGCAGAACGACCCGTGAACTCGTATTCAAAACTCGGGTGGCGCGGG:CTT:GTGCTTCGGT:ACTCGTCC:GT:TG:CCCCC:TCGCTGGTGGTGCATTCATGGCCTCG:GTCATGGTTGCGCTTCCCGGCA:CCTAAACGAACCCCGGCGCGGTATGCGCCAAGG:AATTGTAACAAAGACAGCTTGTCCGGAAGCCCCGTCCGCGGGTGCCGAAGGGCATTGCCATCTTACACAAAA:CATCGCGTCGCCCCCAA:CCCTTTCCCTTTGGGAA:CA:::CGGGCTTGGGAGCGGAGATTGGTCTCCCGTGCACTT::GTTGTGCGGTTGGCCTAAATAAGAGTCGACGTGGACAAGCGTCACAACAATTGGTGGTTGTTAAAA:CCGTTGCCTTACTGTTGTGCG:TTGTCGT:CTC:TCGTCGACTCCATTGACCC:TGTTGCATTGCGAAA:GCGATGCCTCGACC Gilia_maculata TCGAAACCTGCCTAGCAGAACGACCCGTGAACTCGTATTCAAAACTCGGGCGGTGCGGA:CAT:GTGCTTCGGT:ACTTGTCC:GT:TG:CCCCC:TTGCTGGTGGTGCATTCATGGCCTCG:GCGATGCTTGCGCTTCCCGGCA:CCTAAACGAACCCCGGCGCGGTATGCGCCAAGG:AATTGTAACATAGACAGCTTGTCCAGAAGCCCCGTTTGCGGGTGCCGAAGGGCATTGCCATCTTACACAAAA:CATCGCGTCGCCCCCAA:CCCTTTTCCTTTGGGAATCA:::CGGGCTTGGGAGCGGAGATTGGTCTCCCGTGCACTT::GCTGTGCGGTTGGCCTAAATAAGAGTCGACGTGGACGTGCGTCACAACAATTGGTGGTTGTTAAAA:CCAGTGCCTTACTGTTGTGCG:TTAACGTCCTTGTCGTCGACTCCATTGACCC:TGTTGCATTGCGAAA:GCAATGCCTCGACC Leptodactylon_pungens TCGAAACCTGCCTAGCAGAACGACCCGCGAACTCGTATTCAAAACTCGGGTGGCGCATG:CTT:GTGCTTCGGT:ACTCGCCT:GT:TG:CCCCCTTTGCTGGTGGTGCATCCATGGCCTCG:GCGATGCTTGCGCTTCCCGGCA:CCTAAACGAACCCCGGCGCGGTATGCGCCAAGG:AATTGTAACATAGACAGCTTGTCCGGAAGCCCCGTTCGCGGGTGCGGAAGGGCATTGCCATCTTACACAAAA:CATCGCGTCGCCCCCAA:CCCTTTCCCTTTGGGAATCA:::CGGGCTTGGGAGCGGAGATTGGTCTCCCGTGCACTT::GTTGTGCGGTTGGCCTAAATAAGAGTCGACGTGTACGTGCGTCACAACAATTGGTGGTTGTTAAAAACCTTTCCCTTGCTGTTGTGCG:TTGTCGT:CCT:C:TCCGACTCCATTGACCC:TGTTGCATTGCGAAA:GTAATGCCTCGACC Leptodactylon_watsonii TCGAAACCTGCCTAGCAGAACGACCCGCGAACTCGTATCCAAAACTCGGGTGGTGCAGG:CTT:GTGCTTCGGT:ACTCGCCT:GT:TG:CCCCCTTTGCTGGTGGTGCATTCATGGCCTCG:GCAATGCTTGTGCTTCCCGGCA:CCTAAACGAACCCCGGCGCGGTATGCGCCAAGG:AATTGTAACATAGACAGCTTGTCCGGAAGCCTCGTTCGCGGGTGCGGAAGGGCATTGCCATCTTACACAAAA:CATCGCGTCGCCCCCAA:CCCTTTTCCTTTTGGAATCA:::CGGGCTTGGGAGCGGAGATTGGTCTCCCGTGCACTT::GTTGTGCGGTTGGCCTAAATAAGAGTCGACGTGTACGTGCGTCACAACAATTGGTGGTTGTTAAAAACCTTTGCCTTGCTGTTGTGCG:TTGTCGT:CCT:CGTCCGACTCCATTGACCC:TGTTGCATTGCGAAA:GTAATGCCTCGACC Linanthus_arenicola TCGAAACCTGCCTAGCAGAACGACC:GCGAACTCGTATTCAAAACTCGGGTGGCGCATG:CTT:GTACTTCAGT:ACTAGCAT:GT:TG:CCCC:TTTGCTGGTGGTGCATTCATGGCCTCG:GCAATGCTTGTGCTTCCCGGCA:CCT:AACGAACCCCGGCGCGGTATGTGCCAAGG:AATTGTAACATAGACAGCTTGTCCGGAAGCCCCGTTTGCGGGTGCGGAAGGGCAATGCCATCTTACAAAAAA:CATCGCGTCGCCCCCAA:CCCTTTTCCTTTGGGAATCATCACGGGCTTGGGAGCGGAGATTGGTCTCCCGTGCACTT::GTTGTGCGGTTGGCCTAAATAAGAGTCGACGTGTACGTGCGTCACAACAATTGGTGGTTGTTAAAAACCTTTGCCTTGCTGTTG:TGCGTTGTCGT:CCT:CCTCAGACTCCATTGACCC:TGTTGCATTGCGTAA:GTGATGC:TCGACC Linanthus_bellus TCGATACCTGCCTAGCAGAACGACCCGCGAACTCGTATTCAAAACTCGGGTGGTGCATG:CTT:GTGCTTTGGT:ACTGGCAT:GT:TG:CCCCC:TTGCTGGTGGTGCATTCATGGCCTCG:GCGATGATTGTGCTTCCCGGCA:CCTAAACGAACCCCGGCGCGGTATGCGCCAAGGGAATTGTAACATAGACAGCTTGTCCGGAAGCCCCGTTCGCGGGTGTAGAAGGGCATTGCCATCTTACACAAAA:CATCG{CT}GTCGCCCCCAA:CCCTTTTCCTTTGGGAATTA:::CGGTTCTGGGAGCGGAGATTGGTTTCCCGTGCACTT::GCTGTGCGGTTGGCCTAAATAAGAGTCGACGTGTACGCGCGTCACAACAATTGGTGGTTGTTAAAA:ACTTTGCCTTGTTGTTGTGCG:TTGTCGT:CCT:TGTCTGACTCCATTGACCCTGTTTGCATTGGCGAAAGCGATGCCTCGACC Linanthus_bigelovii TCGAAACCTGCCTAGCAGAACGACCCGTGAAATTGTATTCAAAACTCGGGTGGTGCATG:CTT:GTGCTTCTGTAACTCGCAT:GT:GG:CCCC::TTGCTGGTGGTGCATTCATGGCCTAG:GCGATGTTTGTGCTTCCTGGCAACCTAAACGAACCCCGGCACGGTATGTGCCAAGG:AATTGTAACATAGACAGCTTGTCTGAAAGCCCCGTTCGCGGGTGCGGAAGGGCAATGCCATCTTACACAAAA:CATCGCGTCGCCCCCAT:CCCTTTTCCTTTGGGAATCATTACGGGCTTGGGGGCGGAGATTGGTCTCCCGTGCACTT::GATGTGCGGTTGGCCTAAATAAGAGTCGACGT{GT}TACGTGCGTCACAACAATTGGTGGTTGTTAAAAGCCTTTGCCTTGCTGTTGTGCG:TTGTCGT:CCT:C{CG}TCCGACTCCATTGACCC:TGTTGCATTGCGTAA:GTGATGCCTCGACC Linanthus_ciliatus TCGAAACCTGCCTAGCAGAACGACCCGCGAACTTGTATTACAAACTTGGGTGGTGACTA:CTC:GTGCTTCGGC:ACTTGTGC:GT:CG:CCCCC:TTGCCGGTGGGGCATCCATGGCCTTG:GCTACGGTTGTTCTTCCCGGCA:CCTTAACGAACCCCGGCACGGTATGTGCCAAGG:AATTGTATCAAAAAAAGCTTGCCTTGAAGCCCCGTTCGCGGGTGCCAAAGGGCATTGCAATCTTACACAAAA:CATCGCGTCGCCCCCAA:CCCATTCCTTTTGG:AATCG:::CGGTGTTGGGAGCGGAGATTGGTCTCCCGTGCACAT::GCTGTGCGGTTGGCCTAAATAAGAGTTGGCGTGCACGGGTGCCACAACAATTGGTGGTTGTTAAGA:CCTTTGCCTTACTGTTGTGCGCTTGCTTG:CGC:TGT::::CTCCAATGACCC:TGTCGCATTGCGAAA:GTGATGCTTCGACC Linanthus_concinnus TCGAAACCTGCCTAGCA{AG}AACGACCCGCGAACTCGTATTCAAAACTCGGGGCGGCGCGGGCTT:GTGCTTCGGT:ACTTGCCG:GT:TG:CCCCC:TCGCTGGTGGTGCATTCATGGCCTTCGGCGATGCTTGTGCTTCCCGGCA:CCTAAACGAACCCCGGCGCGGTATGCGCCAAGG:AATTGTAACATA{AG}ACAGCTTGTCCGGAAGCCCCGTCCGCGGGTGCCGAAAGGCATTGCCATCTTACACAAAA:CATCGCGTCGCCCCCAA:CCCTTTTCCTTTGGG:ATCA:::TGGGCTTGGGAGCGGAGATTGGTCTCCCGTGCACAT:TGATGTGCGGTTGGCCTAAATAAGAGTCGACGTGGGCGTGCGTCACAACAATTGGTGGTTGTTAAAA:ACTTTTCCTTACTGTTGTGCG:TTTCTGT:C{CT}T:CA:TAG::TCGACTCCATT:GACCCTGTTGCGAAA:GCGATGCTTCGACC Linanthus_demissus TTGAAACCTGCCT{AG}GCAGAACGACCCGTGAACTCGTATTCAAAACTTGGGTGGTGCAGG:CTT:GTGCTTCGGT:ACTAGTCT:GT:TG:CCCCC:TTGCTGGTGGTGCATTCATGGCCTCG:GCGATGCTTGTGCTTCCCGGCA:C{AC}TTAACGAACCCCGGCGCGGTATGCGCCAAGG:AATTGTAACATAGACAGCTTGTCCGGAAGTCCCGTTCGCGGGTGCCGAAGGGCATTGCCATCTTACACAAAA:CATCG{CT}GTCGCCCCCAA:CCCTTTCCCTCTGGGAATCA:::CGGGCTTGGGAGCGGAGATTGGTCTCCCCTGCACTC::{GT}CTGTGTGGTTGGCCTAAATAAGAGTCGACGTGTGCGTGCGTCACAACAATTGGTGGTTGTTAAAA:ACTTTCCCTTG:TGTTGTGCG:TTGTCGT:CCT:CGTCCGACTCCATTGACCCTGTTTGCATTGCGAAA:GTGATGCATCGACC Linanthus_dianthiflorus TCGAAACCTGCCTAGCAGAACGACCCGCGAACTTGTATTCAAAACTCGGGTGGGGCAGG:CGT:GTGCTTCGGT:ACTCACTT:GT:TG:CCCCC:TTGCTGGTGGTGCATTCATGGCCTCG:GCGATGATTGTGCTTCCCGGCA:CCTAAACGAACCCCGGCGCGGTATGCGCCAAGG:AATTGTAACATAGACAGCTTGTCTGGAAGCTCCGTCCGCGGGTGCTGAAGGGCATTGCCATCTTACAAAAAA:CATCGTGTCGCCCCCAA:CCCTTTCCCTTTGGGAATCA:::CGGGCTTGGGAGCGGAGATTGGTCTCCCGTGCACAC:TGTTGTGCGGTTGGCCTAAATAAGAGTCGGCGTGGACGTGCGTCACAACAATTGGTGGTTGTTAAAA:ACTTTGCCTT::TGTTGTGCG:TTTTCGTCTTC:TAGTCGGCTCCATTGACCC:TGTTGCATTGCGAAA:GTGATGCTTCGACC Linanthus_dichotomus TCGAAACCTGCCTAGCAGAACGACC:GTGAACTCGTATTCAAAACTCGGGTGGTGCATG:CTT:GTGCTTCGGT:ACTCGCAT:GT:TG:CCCCCATTGCTGGTGGTGCATTCATGGCCTTG:GCCATGCTTGTGCTTCCTGGCA:ACTAAACGAACCCCGGCACGGTATGTGCCAAGG:AATTGTAACATAGACAGCTTGTCTGGAAGCCCCGTTCGCGGGTGCAGAAGGGCAATGCCATCTTACACAAAA:CATAGGGTCGCCCCCAA:CCCTTTCCCTGTGGGAATCATCACGGGTTTGGGGGCGGAGATTGGTCTCCCGTGCTCTT::TCTGTGCGGTTGGCCTAAATAAGA{AG}TGGACGTGTACGTGCGTCACAACAATTGGTGGTTGTTAAAAGCCTTT:CCTTGCTGTTGTTGCGTTGTCGT:CCT:CGTCCGACTCCATTGACCC:TGTTGCATTGCGTAA:GTGATGCTTCGACC Linanthus_grandiflorus TCGAAACCTGCCTAGCAGAACGACCCGTGAATTTGTATTACAAACCTGGGT:GTGACGA:CAT:GTGCTTCGGT:ACTTGCAC:GT:TG:CCCCC:TTGCCGGTGGAGCAATCATGGCCTAG:GCTATGGTTGTTCTTCCCGGCA:CCCTAACGAACCCCGGCACGGTATGTGCCAAGG:AATTGTAACAAAGAAAGCTTGTCTGGAGGCCCCGTTCGCGGGTGCCAAAGGGCATTGCAGTCTTACACAAAA:CATCGCGTCGCCCCCAA:CCCATTCCTCTTGGGAATCG:::CGGTTTTGGGAGCGGAGATTGGTCTCCCGTGCACAT::GTTGTGTGGTTGGCCTAAATAAGAGTCGGCGTGAACGAGTGCCACAACAATTGGTGGTTGTTAAAA:CCTTTGCCTTACTGTTGTGCGCTTATTTA:CGT:TGT::::CTCCAATGACCC:TGTTGCATTGCGAAA:GTGATGCCTCGACC Linanthus_killipii TCGAAACCTGCCTAGCAGAACGACCCGCGAACTCGTATTCAAAACTCGGGTGGTGCATG:CTT:GTACTTCGGT:ACTCGCAT:GT:TG:CCGCC:TTGCTGGTGGTGCATTCATGGCCTCG:GCGATGCTTGTGCTTCCCGGCA:CCTAAACGAACCCCGGCGCGGTATGTGCCAAGGGAATTGTAACATAAACAGCTTGTCCGGAAGCCCCGTTTGCGGGTGCGGAAGGGCATTGCCATCTTACACAAAA:CATAGTGTCGCCCCCAA:ACCTTTCCCTTTGGGAATCA:::CGGGCTTGGGAGCGGAGATTGGTCTCCCGTGCACTT::GCTGTGCGGTTGGCCTAAATAAGAGTAGACGTGTACGTGCGTCACAACAATTGGTGGTTGTTAAAA:ACTTTGCCTTGCTGTTGTGCG:TTGTCGT:GAT:CGTTAGACTCCATTGACCC:TGTTGCATTGCGTAA:GTGATGCCTCGACC Linanthus_lemmonii TCGAAA{AC}CTGCCTAGCAGAACGACCCGTGAACTTGTATTACAAACCTGGGGGGTGACAA:CAT:GTGCTTCGGT?ACTTGCAC:GT:TG:CCCCC:TTGCCGGTGGAGCAATCATGGCCTAG:GCTATGCTTGTTCTTCCCGGCA:CCCTAACGAACCCCGGCACGGTATGTGCCAAGG:AATTGTAACAAAGAAAGCTTGTCTGGAGGCCCCGTTCGCGGGTGCCAAAGGGCATTGCAGTCTTACACAAAA:CATCGCGTCGCCCCCAA:CCCATTCCTCT:GGGAATCG:::CGGTTTTGGGAGCGGAGATTGGTCTCCCGTGCACAT::GTTGTGTGGTTGGCCTAAATAAGAGTCGGCGTGAACGAGTGCCACAACAATTGGTGGTTGTTAAAA:CCTTTGCCTTACTGTTGTGCGCTTATTTA:CGC:TGT::::CTCCAATGACCC:TGTTGCATTGCGAAA:GTGATGCTT?GACC Linanthus_liniflorus TCGAAACCTGCCTAGCAGAACGACCCGTGAACTTGTATTACAAACCTGGGGGGT{AG}ACGA:CAT:GTGCTTCGGT:ACTTGCAC:GT:TG:CCCCC:TTGCTGGTGGAGCAATCATGGCCTAG:GCTATGCTTGTTCTTCCCGGCA:CCCTAACGAACCCCGGCACGGTATGTGCCAAGG:AATTGTAACAAAGAAAGCTTGTCTGGAGGCCCCGTTCGCGGGTGCCAAAGGGCATTGCAGTCTTACACAAAA:CATCGCGTCGCCCCCAA:CCCATTCCTCTTGGA:ATCG:::CGGTTTTGGGAGCGGAGATTGGTCTCCCGTGCACAT::GTTGTGTGGTTGGCCTAAATAAGAGTCGGCGTGAACGAGTGCCACAACAATTGGTGGTTGTTAAAA:CCTTTGCCTTACTGTTGTGCGCTTATTTA:CGT:CGT::::CTCCAATGACCC:TGTTGCATTGCGAAA:GTGATGCCTCGACC Linanthus_nudatus TCGAAACCTGCCTAGCAGAACGGCCCGTGAACTTGTATCACAAACTCGGGCGGTGACGA:CTT:GTACTTCGGT:ACTTGCAC:GT:TG:CTACC:TTGCTGGTGGAGCATTTATGGCCTCG:GCTGTGGTTGTTCTTCCCGGCA:CCTTAACTAACCCCGGCACGGAATGTGCCAAGG:AATTGTAACAAAGAGAGCTTGCCTAGAAGCCCCGTTTGCGGGTGCCAAAGGGCAATGCCATCTTACACAAAAACATCGCGTCGCCCCCAA:TCCTTTCTTCTTGG:AAT{AC}T:::AGGTGTTGGGAGCGGAGATTGGTCTCCCGTGCACAT::GTTGTGTGGTTGGCCTAAATTTGAGTTGGCGTGAACTAGTGCCACAACAATTGGTGGTTGTTAAAA:CCTTTGCCTTACTGTTGTGCGCTTGTTTA:CGT:TGT::::CTCCAATGACCC:TGTTGCGTTGCGAAA:GTGACGTCTCGACC Linanthus_nuttallii TCGAAACCTGCCTAGCAGAACGACCCGCGAACTTGTATCACAAACTTGGGTGGTGACGA:CTT:GTGCTTCGGT:ACTTGCAC:GT:TG:CCCCC:TTGCTGGTGGAGCATCCATTGCCTAG:TGTATGGGTGTTCTTCCCGGCA:ACTTAACGAACCCCGGCACGGAATGTG:CAAGG:AATTGTAACAAAGAGAGCTTGCCTGGAAGTCCCGTTCGCGGGTGCCAAAGGGCATTGCCATCTTACACAAAA:CATCGCGTCGCCCCCAA:TCCATTCCTCTTGG:AATCA:::TGGTTTTGGGAGCGGAGATTGGTCTCCCGTACACAT::GCTGTGTGGTTGGCCTAAATAAGAGTCGGCGTGAATGAGTGCCACAGCAATTGGTGGTTGTAAAAA:CCTTTGCCTTACTGTTGTGCGCTTGTCAT::::::::::::CTCCAATGACCC:TGTTGCGTTGCGAAA:GTGATGCC{AT}CGACC Linanthus_orcuttii TCGAAACCTGCCTAGCAGAA{CG}GACCCGCGAA{ACT}T{CG}{GT}TATTCAAAA:TTGGGTGGTGCATG:CTT:GTGTTTCGG{AC}:ACTTTGCATGT:TG:CCCCCTTTGCTGGTGGTGCATTCATGGCTTCG:GCGATG{CT}TTGTGTTTCCCGGTA:CCTAAACGAACCCCGGGGCGGTATGCGCCAAGG:AATTGTAACATAGACAGCTTGTCCGGAGGCCCCGTTCGCGGGTGTCGAAGGGCATTGCCATCTTACACAAAA:CATCGCGTCGCCCCCAA:CCCTTTCCCTTTGGGAATCA:::CGGGCTTGGGAGCGGAGATTGGTCTCCCGTGCACTT::GCTGTGCGGTTGGCCTAAATAAGAGTCGACGTGTACGTGCGTCACAACAATTGGTGGTTGTTAAAA:ACTATTCCTTAC:GTTGTGCG:TTGTCGT:CCT:CGTCCGACTCCATTGACCC:TGTTGCATTGGCGAAAGTGATGCTTCGACC Linanthus_pachyphyllus TCGAAACCTGCCTAGCAGAACGACCTGCGAACTTGTATCACAAACTTGGGTGGTGACGA:CTT:GTGCTTCGGT:ACTTGCAC:GT:TG:CCCCC:TTGCTGGTGGAGCATCCTTTGCCTCG:TGTATTGGTGTTCTTCCCGGCA:ACTTAACGAACCCCGGCACGGAATGTGCCAAGG:AATTGTAACAAAGAGAGCTTGCTTGGAAGTCCCGT{GT}CGCGGGTGCCAAAGGGCATTGCCATCTTACACAAAA:CATCGCGTCGCCCCCAA:TCCATTCCTCTTGG:AATCA:::TGGTTTTGGGAGCGGAGATTGGTCTCCCGTACACAT::GCTGTGTGGTTGGCCTAAATAAGAGTGGGCGTGAATGAGTGCCACAACAATTGGTGGTTGTCAAAA:CCTTTGCCTTACTGTTGTGCGCTTGCTCA:TGT:TAT::::CTCCAATGACCC:TGTTGCGTTGCGAAA:GTGATGCCTCGACC Linanthus_parryae TCGAAACCTGCCTAGCAGAACGACCCGTGAACTCGTATTCAAAACTCGGGCGGCGCATG:CAT:GTGCTTCGGT:ACTTGCAT:GT:TG:CCCCCTTTGCTGGTGGTGCATTCATGGCTTCG:GCGATGCTTGTGCTTCCCGGCA:CCTAAACGAACCCCGGCGCGGAATGTGCCAAGGGAATTGTAACATA:ACAGCTTGTCCGGAAGCCCCGTTCGCGGGTGCGGAAGGGCATTGCCATCTTACACAAAA:CATCGCGTCGCCCCCAA:CCCTTTCCCTTTGGGAATCA:::TGGGCTTGGGAGCGGAGATTGGTCTCCCGTGCACTT::GTTGTGCGGTTGGCCTAAATAAGAGTCGACGTGTGCGTGCGTCACAACAATTGGTGGTTGTTATAA:ACTTTGCCTTGCTGTTGTGCG:TTGTCGT:CCT:CGTCCGACTCCATTGACCC:TGTTGCATTGCGTAA:GTGATGCCTCGACC Linanthus_uncialis TCGAAACCTGCCTAGCAGAACGACCCGTGAACTTGTATTCAAAACTCGGGTGGTGCAGG:CGT:GTGCTTCGGT:GCTCGCCT:GT:TT:CCCCCTTTGCTGGTGGTGCATTCATTGCCTCG:GTGATGGTTGTGCTTCCCAGCA:CCTAAACGAACCCCGGCGCGGTATGCGCCAAGG:AATTGTAACATAGACAGCTTGTCCAGAAGCCCCGTTCGCGGGTGCCGAAGGGCATTGCCATCTTACACAAAA:CATCGCGTCGCCCCCAA:CCCTTTCCCTTTGGGAATCA:::CGGG{CT}TTGGGAGCAGGGATTGGTCTCCCGTGCACAC:TGTTGTGCGGTTGGCCTAAATAAGAGTCGACGTGGACGTGCGTCAAAACAATTGGTGGTTGTTAAAA:ACTTTGCCTTACTGTTGTGCG:TTTCCGT:CCG:TTGTCGGCTCCATTGACCC:T:TTGCATTGCGAAA:GTGATGCTTCGACC Phlox_gracilis TCGAAACCTGCCTAGCAGAACGACCCGCGAACTTGTATTCAAAACTTGGGTTGTGCGTG:CTT:CTGCTTCGGC:TGTTGCTC:GTGCATTACCC:TCGCTGGTGGTGCATCCATTGCCCAG:GCAATGCATGCGCTTCCCGGC::::TTAACTAACCCCGGCACGGTATGTGCCAAGG:AATTGTAACAAAGAGAGCTTGTCTGGAGGCCCCGTTCGCGGGTGCCGAAGGGCACTGCCATCTTACACAAAA:CATCGCGTCGCCCCCAA:CCCATTCCCTTTGGGATTCA::ATGGT:TTGGGAGCGGATATTGGTCTCCCGAGCACTT:CGGTGTGCGGTTGGCCCAAATAAGAGT:GACGCGGACTAGCGACACAACAATTGGTGGTTGTTAAAA:CCTCAGCCTTACTGTTGTTCG:TCTTTGC:TCC:TCGTCTACTCCATTGACCC:TGTTGCATTGCGAAA:GTGATGCCTCGACC Phlox_hoodii TCGAAACCTGCCTAGCAGAACGACCCGCGAACTTGTA{CT}TCAAAACTTGGGTTATGCGTG:CTT:CTGCTTCGGC:CGTTGCTC:GTGTA::ACCC:TCGCCGGTGGTGCATTCATGGCCTCG:GCAATGCATGTGCTTCCCGGCA::CTTAACTAACCCCGGCACGGTATGTGCCAAGG:AATTGTAACAAAGAGAGCTTGTCTGGAAGCCCCGTTCGCGGGTGCCGAAGGGCATTGCCATCTTACACAAAA:CATCGCGTCGCCCCCAA:CCCATTTCCTTTGGGATTCA::ATGGT:TTGGGAGCGGAAATTGGTCTCCCGTGCACTT:CGGTGTGCGGTTGGCCTAAATAAGAGT:GACGTGGACTAGCGACACAGCAATTGGTGGTTGTTAAAA:CCTTATCCTTACTGTTGTGCG:TCTTTGC:TCC:TCGTCTACTCCATTGACCC:TGTTGCATTGCGAAA:GTGATGCCACGACC Phlox_stansburyi TCGAAACCTGCCTAGCAGAACGACCCGCGAACTTGTATTCAAAACTTGGGTTGTGCGTG:CTT:CTGCTTCGGC:CGTTGCTC:GTGTA::ACCC:TCGCTGGTGGTGCATTCATGGCCTCG:GCAATGCGTGCGCTTCCCGGCA::CTTAACTAACCCCGGCACGGTATGTGCCAAGG:AATTGTAACAAAGAGAGCTTGTCCGGAAGCCCCGTTCGCGGGTGCCGAAGGGCATTGCCATCTTACACAAAA:CATCGCGTCGCCCCCAA:CCCATTTCCTTTGGGATTCA::ACGGT:TTGGGAGCGGAAATTGGTCTCCCGTGCACTT:CGGTGTGCGGTTGGCCTAAATAAGAGT:GACGTGGACTAGCGACACAACAATTGGTGGTTGTCAAAA:CCTTATCCTTACTGTTGTGCG:TCTTTGC:TCC:TCGTCTACTCCATTGACCC:TGTTGCATCGCGAAA:GTGATGCCACGACC Polemonium_pauciflorum TCGAAACCTGCCTAGCAGAACGAACCGCGAACTTGTATTCAAAACTCGGGTGGCACGGG:CGTAATACTTCGGT:ACTCGCCC:GT:CG:GCCCC:TCGTCGGGAGCGCACGCACTGCCTCG:GCAATGCTTGCTCTTCCCGA{AC}AACATAAACGAACCCCGGCGCGGTATGCGCCAAGG:AATTGTAACAAAGACAGCTTGCCCGGAAGCCCCGTTCGCGGGTGCCGAAGGGCAACGCCGTCTTACACAAAAACATCGCGTCGCCCCCAACATCATTCCCTCTGG:AATCA:::CGGTCTTGGGAGCGGAAATTGGTCTTCCCGTGCACGCTGCTGTGCGGTTGGCCTAAATAAGAGTCGACGTGAACGAGCGTCACAACAAGTGGTGGTTGTTAAAC:CGTT:GCGTTGCTGTTGTGCG:TCCACCGTTCT:TCGTCGGCTCCATTGACCC:TGTTGCATTGCGAAA:GTGATGCCTCGACC Polemonium_pulcherrimum TCGAAACCTGCCTAGCAGAACGACCCGCGAACTTGTATTCAAAACTCGGGTGGAATGGG:CGTAGTGCTTCGGT:ACTCGCCC:GT:CG:CCCCC:TCGTCGGGAGCGCACGCATTGCCTCG:GCAATGCTTGCGCTTCCCGACA:CATAAACGAACCCCGGCGCGGTATGCGCCAAGG:AATTGTAACAAAGACAGCCTGCCCGGAAGCCCCGTTCGCGGGTGCCGAAGGGCAACGCCGTCTTACACAAAAACATCGCGTCGCCCCCAACCTCATTCCCTTCGGGAATGA:::CGGTCTTGGGAGCGGAAATTGGTCTTCCCGTGCACGCTGCTGCGCGGTTGGCCTAAATAAGAGTCGACGTGGATGAGCGTCACAACAAGTGGTGGTTGTCAAAC:CGTT:GCGTTGCTGTTGTGCG:TTACTGTCTCT:TCGTCGGCTCCACTGACCC:TGTTGCATTGCGAAA:GTGATGCTTCGACC Polemonium_visccosum TCGAAACCTGCCTAGCAGAACGACCCGCGAACTTGTATTCAAAACTCGGGTGGCACGGG:CGTAGTACTTCGGT:ACTCGCCC:GT:CG:CCCTC:TCGTCGGGAGTGCACGCACTGCCTCG:GCAATGCTTGCGCTTCCCGACA:CATAAACGAACCCCGGCGCGGTATGCGCCAAGG:AATTGTAACAAAAACAGCTTGCCCGGAAGCCCCGTTCGCGGGTGCAGAAGGGCAACGCCGTCTTACACAAAAACATCGCGTCGCCCCCAACATCATTCCCTTCGG:AATCA:::CGGTCTTGGGAGCGGAAATTGGT:TTCCCGTGCACG:TGCTGTGCGGTTGGCCTAAATAAGAGTCGACGTGGACGAGCGTCACAACAAGTGGTGGTTGTTAAAC:CGTT:GCGTTGCTGTTGTGCG:TTACCGTCTCT:TCGTCGTCTCCATTGACCC:TGTTGCATTACGAAA:GTGATGC:TCGACC ; END; BEGIN SETS; CHARSET ITS1 (CHARACTERS = ITS1&2) = 1-253; CHARSET ITS2 (CHARACTERS = ITS1&2) = 254-483; END; BEGIN TREES; TITLE Tb5689; LINK TAXA = Taxa1; TRANSLATE 1 Polemonium_pulcherrimum, 2 Polemonium_pauciflorum, 3 Polemonium_visccosum, 4 Phlox_stansburyi, 5 Phlox_hoodii, 6 Phlox_gracilis, 7 Linanthus_uncialis, 8 Linanthus_orcuttii, 9 Linanthus_concinnus, 10 Linanthus_parryae, 11 Linanthus_bellus, 12 Linanthus_killipii, 13 Linanthus_demissus, 14 Linanthus_dianthiflorus, 15 Gilia_maculata, 16 Gilia_filiformis, 17 Leptodactylon_pungens, 18 Leptodactylon_watsonii, 19 Linanthus_lemmonii, 20 Linanthus_liniflorus, 21 Linanthus_bigelovii, 22 Linanthus_arenicola, 23 Linanthus_dichotomus, 24 Linanthus_grandiflorus, 25 Linanthus_nuttallii, 26 Linanthus_pachyphyllus, 27 Linanthus_ciliatus, 28 Linanthus_nudatus; TREE Fig._3b = [&R] (((((28,(26,25)),(27,((24,19),20)))Leptosiphon_Clade,(6,(5,4))Phlox_Clade),((((((23,21),((22,12),10)),(18,17)),(13,(11,8))),((14,7),9)),(16,15))Linanthus_Clade),((3,2),1)); END; BEGIN TREES; TITLE Tb5691; LINK TAXA = Taxa1; TRANSLATE 1 Polemonium_pulcherrimum, 2 Polemonium_pauciflorum, 3 Polemonium_visccosum, 4 Phlox_stansburyi, 5 Phlox_hoodii, 6 Phlox_gracilis, 7 Linanthus_uncialis, 8 Linanthus_orcuttii, 9 Linanthus_concinnus, 10 Linanthus_parryae, 11 Linanthus_bellus, 12 Linanthus_killipii, 13 Linanthus_demissus, 14 Linanthus_dianthiflorus, 15 Gilia_maculata, 16 Gilia_filiformis, 17 Leptodactylon_pungens, 18 Leptodactylon_watsonii, 19 Linanthus_lemmonii, 20 Linanthus_liniflorus, 21 Linanthus_bigelovii, 22 Linanthus_arenicola, 23 Linanthus_dichotomus, 24 Linanthus_grandiflorus, 25 Linanthus_nuttallii, 26 Linanthus_pachyphyllus, 27 Linanthus_ciliatus, 28 Linanthus_nudatus; TREE sensu_Patterson = [&R] (((((28,(26,25)),(27,(24,(20,19)))),(6,(5,4))),(((((23,21),22),((((((14,7),9),13),(11,8)),10),12)Linanthus_sect._Dianthoides_sensu_Patterson_1993_),(18,17)),(16,15))),((3,2),1)); END; BEGIN TREES; TITLE Tb5688; LINK TAXA = Taxa1; TRANSLATE 1 Polemonium_pulcherrimum, 2 Polemonium_pauciflorum, 3 Polemonium_visccosum, 4 Phlox_stansburyi, 5 Phlox_hoodii, 6 Phlox_gracilis, 7 Linanthus_uncialis, 8 Linanthus_orcuttii, 9 Linanthus_concinnus, 10 Linanthus_parryae, 11 Linanthus_bellus, 12 Linanthus_killipii, 13 Linanthus_demissus, 14 Linanthus_dianthiflorus, 15 Gilia_maculata, 16 Gilia_filiformis, 17 Leptodactylon_pungens, 18 Leptodactylon_watsonii, 19 Linanthus_lemmonii, 20 Linanthus_liniflorus, 21 Linanthus_bigelovii, 22 Linanthus_arenicola, 23 Linanthus_dichotomus, 24 Linanthus_grandiflorus, 25 Linanthus_nuttallii, 26 Linanthus_pachyphyllus, 27 Linanthus_ciliatus, 28 Linanthus_nudatus; TREE Fig._3c = [&R] (((((28,(26,25)),(27,(24,(20,19))))Leptosiphon_Clade,(6,(5,4))Phlox_Clade),(((((((((23,21),10),(22,12)),(18,17)),(11,8)),13),((14,7),9)),15),16)Linanthus_Clade),((3,2),1)); END; BEGIN TREES; TITLE Tb5687; LINK TAXA = Taxa1; TRANSLATE 1 Polemonium_pulcherrimum, 2 Polemonium_pauciflorum, 3 Polemonium_visccosum, 4 Phlox_stansburyi, 5 Phlox_hoodii, 6 Phlox_gracilis, 7 Linanthus_uncialis, 8 Linanthus_orcuttii, 9 Linanthus_concinnus, 10 Linanthus_parryae, 11 Linanthus_bellus, 12 Linanthus_killipii, 13 Linanthus_demissus, 14 Linanthus_dianthiflorus, 15 Gilia_maculata, 16 Gilia_filiformis, 17 Leptodactylon_pungens, 18 Leptodactylon_watsonii, 19 Linanthus_lemmonii, 20 Linanthus_liniflorus, 21 Linanthus_bigelovii, 22 Linanthus_arenicola, 23 Linanthus_dichotomus, 24 Linanthus_grandiflorus, 25 Linanthus_nuttallii, 26 Linanthus_pachyphyllus, 27 Linanthus_ciliatus, 28 Linanthus_nudatus; TREE Figs._2_&_3a = [&R] (((((28,(26,25)),(27,(24,(20,19))))Leptosiphon_Clade,(6,(5,4))Phlox_Clade),((((((((23,21),10),(22,12)),(18,17)),(11,8)),13),((14,7),9)),(16,15))Linanthus_Clade),((3,2),1)); END; BEGIN TREES; TITLE Tb5690; LINK TAXA = Taxa1; TRANSLATE 1 Polemonium_pulcherrimum, 2 Polemonium_pauciflorum, 3 Polemonium_visccosum, 4 Phlox_stansburyi, 5 Phlox_hoodii, 6 Phlox_gracilis, 7 Linanthus_uncialis, 8 Linanthus_orcuttii, 9 Linanthus_concinnus, 10 Linanthus_parryae, 11 Linanthus_bellus, 12 Linanthus_killipii, 13 Linanthus_demissus, 14 Linanthus_dianthiflorus, 15 Gilia_maculata, 16 Gilia_filiformis, 17 Leptodactylon_pungens, 18 Leptodactylon_watsonii, 19 Linanthus_lemmonii, 20 Linanthus_liniflorus, 21 Linanthus_bigelovii, 22 Linanthus_arenicola, 23 Linanthus_dichotomus, 24 Linanthus_grandiflorus, 25 Linanthus_nuttallii, 26 Linanthus_pachyphyllus, 27 Linanthus_ciliatus, 28 Linanthus_nudatus; TREE sensu_Grant = [&R] (((((28,(26,25)),(27,(24,(20,19)))),(6,(5,4))),((((((23,21),((22,12),((((15,(14,7)),13),(11,8)),10)Linanthus_sect._Dianthoides_sensu_Grant_1959_)),18),17),9),16)),((3,2),1)); END;