#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 25, 2024; 17:25 GMT TreeBASE (cc) 1994-2008 Study reference: Levy L., Castlebury L., M carris L., Meyer R., & Pimentel G. 2001. Internal Transcribed Spacer Sequence-Based Phylogeny and Polymerase Chain Reaction-Restriction Fragment Length Polymorphism Differentiation of Tilletia walkeri and T. indica. Phytopathology, 91(10): 935-940. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S765] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=26; TAXLABELS Tilletia_barclayana_828 Tilletia_barclayana_832 Tilletia_barclyana_637 Tilletia_bromi_148 Tilletia_cerebrina_168 Tilletia_controversa_V412 Tilletia_fusca_141 Tilletia_goloskokovii_321 Tilletia_guyotiana_171 Tilletia_horrida_338 Tilletia_horrida_358 Tilletia_horrida_WSP_69539 Tilletia_indica_BC386 Tilletia_indica_BC388 Tilletia_indica_BC392 Tilletia_indica_BC398 Tilletia_indica_BC405 Tilletia_indica_LC1012 Tilletia_laevis_V766 Tilletia_tritici_T1 Tilletia_walkeri_BC027 Tilletia_walkeri_BC188 Tilletia_walkeri_BC447 Tilletia_walkeri_BC449 Tilletia_walkeri_BC456 Tilletia_walkeri_LC1123 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M801] TITLE ITS_rDNA; LINK TAXA = Taxa1; DIMENSIONS NCHAR=697; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=~ GAP= .; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Tilletia_barclayana_828 TCATTAAAGAATTTGA...GCAAATGCGCTCTGCGCATTGCACACCTTCGTGTGTGTGATGCGCATCTCTTTATTTTCCACACTAAACTACGGA....GAGTCGACGCA.......AGTC.AGCTTG.TCC.....GG....AAGGCATTGGTAGTCT.......CGAC............TGCCTTTCCCGCCC..TCTTTTAAACTCATACTTATTATGAATGTTCAACCTATTGTCTTCGGACATGAA..TAAAATACAACTTTTGACAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCTTTGGGTATTCTCAAAGGCATGCCTGTTTGAGTGTCATAACAATATCATCTCTCAACTTTTTTGTAAAAGAAGGTTGCTTGGAGATGGTGATGGGCGCTT...GCCATG.CTGAATAAGTCTGGCTCGCCTTAAAGACATCAGTAGC.TC.TTAT.GGAGTCCGGTCTGACTATGTGTGATAATTTGATCGCATAGGATGTG..CTT.G.C..ACAACCGG..TCTTGCTGTTAAGAG..TCTGCTTCTAACCTGGAATGGCTTGA...........GAGTAAC.TTTCAA.CCATCGC.AGCTTTTTT.GTCTGACCT Tilletia_barclayana_832 TCATTAAAGAATTTGA...GCAAATGCGCTCTGCGCATTGCACACCT.CGTGTGTGTGATGCGCATCTCTTTATTTTCCACACTAAACTACGGA....GAGTCGACGCA.......AGTC.AACTTG.TCC.....GG....AAGGGATTGGTAGTCT.......CGAC............TGCCTTTCCCGCCC..TCTTTTAAACTCATACTTATTATGAATGATCAATCTATTGTCTTCGGACATGAA..TAAAATACAACTTTTGACAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCTTTGGGTATTCTCAAAGGCATGCCTGTTTGAGTGTCATAACAATCTCATCTCTCAACTTTTTTGTAAAAGAAGGTTGCTTGGAGATGGTGATGGGCGCTT...GCCATG.CTGAATAAGTCTGGCTCGCCTTAAAGACATCAGTAGC.TC.TTAT.GGAGTCCGGTCTGACTATGTGTGATAATTTGATCGCATAGGATGTG..CTT.G.C..ACAACCGG..TCTTGTTGTTAAGAG..TCTGCTTCTAACCTGGAATGGCTTGA...........GAGTAAC.TTTCAA.CCATCGC.AGCTTTTTTTGTCTGACCT Tilletia_barclyana_637 TCATTAAAGAATTTGA...GCAAATGCGCTCTGCGCATTGCACACCT.CGTGTGTGTGATGCGCATCTCTTTATTTTCCACACTAAACTACGGA....GAGTCGACGCA.......AGTC.AACTTG.TCC.....GG....AAGGGATTGGTAGTCT.......CGAC............TGCCTTTCCCGCCC..TCTTTTAAACTCATACTTATTATGAATGTTCAACTTATTGTCTTCGGACATGAA..TAAAATACAACTTTTGACAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCTTTGGGTATTCTCAAAGGCATGCCTGTTTGAGTGTCATAACAATCTCATCTCTCAACTTTTTTGTAAAAGAAGGTTGCTTGGAGATGGTGATGGGCGCTT...GCCATG.CTGAATAAGTCTGGCTCGCCTTAAAGACATCAGTAGC.TC.TTAT.GGAGTCCGGTCTGACTATGTGTGATAATTTGATCGCATAGGATGTG..CTT.G.C..ACAACCGG..TCTTGTTGTTAAGAG..TCTGCTTCTAACCTGGAATGGCTTGA...........GAGTTAC.TTTCAA.CCATCGC.AGCTTTTTTTGTCTGACCT Tilletia_bromi_148 TCATTAGTGAATCTTTATTGCCGTACTTCTCTTCGAGAGG....TCGGCTCTAATCCCATCA..........TCTATT.ATC.CAAACACAAGACTACGGAGGGGTGGCTGCGTTGGTGGCCCCCTGCTCCGGATTGGTTCTGGGT..CAGATCATT.AACACTGGCTGGCTCGGTTCCTACAAC.CTTTTCAAC..TC..ATGAATC.........ATAGAATGTTAAACCCATTGTCTTCGGACATGAAACTAAA.TACAACTTTTGACAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTGGGTATTCTCAAGGGCATGCCTGTTTGAGTGTCATAACATGTTCAGCTCCCAGCCTTTTTGAAAGAGAAGGTTGCTTGGAGTTGGTGATGGACGTTTTTTGCCAGACCTT..ACCGTCTTGCTCGTCTTAAATCGATCAGTGGAATCATCTTTTGAGTCCGGTCTGACTATGTGTGATAATTTGATCACATAGAATGTGGGCTT.GCCCTACAACCGC..A.TCT.TGAAG.GA..CTCTGCTTCCAACACGGAATGGT.CTT...GG.ACCATCGTTAGCCTTTTAATGCT..................TGACCT Tilletia_cerebrina_168 TCATTAGTGAATTTTTATTGCCGTACTTCTCTTTGAGAGG....TCGGCTCTAATCCAATCA..........TCTATT.ATC.CAAACACAAGACTACGGAGGGTTGGCTGCGTTGGTGGCCTCCTGTTCCGGATTGGTTCTGGGT..CAGATCATT.AATACTGGCTGGCTTGGTTCCTACA.C.CTTTTAAAC..TC..ATGAATC.........ATAGAATGTTAAACCAATTGTCTTCGGACATGAAACTAAA.TACAACTTTTGACAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTGGGTATTCTCAAGGGCATGCCTGTTTGAGTGTCATAACATGTTCAGCTCTCAACCCTTTTGAAAGAGAAGGTTGCTTGGAGTTGGTGATGGACGTTTTT.GCCAGACCTT..ACCGTCTTGCTCGTCTTAAATTGATCAGTGGAATCATCTTTTGAGTCCGGTCTGACTATGTGTGATAATTTGATCACATAGAATGTGGGCTT.GCCC.ACAACCGC..A.TCT.TGAAG.GA..CTCTGCTTCTAACACGGAATGGT.TTCA.AAG.ACCATCGTTAGCCTTT.AATGCT..................TGACCT Tilletia_controversa_V412 TCATTAGTGAATCTTTATTGCCGTCCTTCTCTTCGAGAGG....TCGGCTCTAATCCCATCA..........TCTATT.ATC.CAAACACAAGACTACGGAGGGGTGGCTGCGTTGGTGGCCCCCTGCTCCGGATTGGTTCTGGGT..CAGATCATT.AACACTGGCTGGCTCGGTTCCTACAAC.CTTTTCAAC..TC..ATGAATC.........ATAGAATGTTAAACCCATTGTCTTCGGACATGAAACTAAA.TACAACTTTTGACAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATC~TCGAATCTTTGAACGCACCTTGCGCCCTTGGGTATTCTCAAGGGCATGCCTGTTTGAGTGTCATAACATGTTCAGCTCTCAGCCTTTTTGAAAGAGAAGGCTGCTTGGAGTTGGTGATGGACGTTTTTTGCCAGACCTT..ACCGTCTTGCTCGTCTTAAATCGATCAGTGGAATCATCTTTTGAGTCCGGTCTGACTATGTGTGATAATTTGATCACATAGAATGTGGGCTT.GCCCTACAACCGC..A.TCT.TGAAG.GA..CTCTGCTTCCAACACGGAATGGT.CTT...GG.ACCATCGTTAGCCTTTTAATGCT..................TGACCT Tilletia_fusca_141 TCATTAGTGAATCTTTATTGCCGTACTTCTCTTTGAGAGG....TCGGCTTTAATCCCATCA..........TCTATTTATC.CAAACACAAGACTACGGAGGGTTGGCTGCGTTGGTGGCCTCCTGTTCCGGATTGGTTCTGGGT..CAGCTCACT.AATACTGACTGGCTTGGTTCCTACAAC.CTTTTAAAC..TC..ATGAATC.........ATAGAATGTTAAACCAATTGTCTTCGGACATGAAACTAAA.TACAACTTTTGACAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTGGGTATTCTCAAGGGCATGCCTGTTTGAGTGTCATAACATGTTCAGCTCTCAGCCTTTTTGAAAGAGAAGGTTGCTTGGAGTTGGTGATGGACGTTT...GCCAGACGTA..ACAGTCTTGCTCGTCTTAAATACATCAGTGGAATCATCTTTTGAGTCCGGTCTGACTATGTGTGATAATTTGATCACATAGAATGTGGGCTT.GCC.TACAACCGC..A.TCT.TGAAG.GA..CTCTGCTTCCAACACGGAATGGT.TTTA.AAG.ACCATCGTTAGCCTTT.AATGCT..................TGACCT Tilletia_goloskokovii_321 TCATTAGTGAATCTTTATTGCCGTACTTCTCTTTGAGAGG....TCGGCTCTAATCCCATCA..........TCTATT.ATC.CAAACACAAGACTACGGAGGGGTGGCTGCGTTGGTGGCCCCCTGCTCCGGATTGGTTCTGGGT..CAGATCATTTAACACTGGCTGGCTCGGTTCCTACAAC.CTTTTCAAC..TC..ATGAATC.........ATAGAATGTTAAACCCATTGTCTTCGGACATGAAACTAAA.TACAACTTTTGACAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTGGGTATTCTCAAGGGCATGCCTGTTTGAGTGTCATAACATGTTCAGCTCTCAGCCTTTTTGAAAGAGAAGGTTGCTTGGAGTTGGTGATGGACGTTTTT.GCCAGACCTT..ACCGTCTTGCTCGTCTTAAATCGATCAGTGGAATCATCTTTTGAGTCCGGTCTGACTATGTGTGATAATTTGATCACATAGAATGTGGGCTTTGCC.TACAACCGC..A.TCT.TGAAG.GA..CTCTGCTTCCAACACGGAATGGT.CTTCGAAG.ACCATCGTTAGCCTTTTAATGCT..................TGACCT Tilletia_guyotiana_171 TCATTAGTGAATCTTTATTGCCGTACTTCTCTTCGAGAGG....TCGGCTCTAATCCCATCA..........TCTATT.ATC.CAAACACAAGACTACGGAGGGGTGGCTGCGTTGGTGGCTCCCTGCTCCGGATTGGTTCTGGGT..CAGATCATT.AACACTGGCTGGCTCGGTTCCTACAAC.CTTTTCAAC..TC..ATGAATC.........ATAGAATGTTAAACCCATTGTCTTCGGACATGAAACTAAA.TACAACTTTTGACAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTGGGTATTCTCAAGGGCATGCCTGTTTGAGTGTCATAACATGTTCAGCTCCCAGCCTTTTTGAAAGAGAAGGTTGCTTGGAGTTGGTGATGGACGTTTTTTGCCAGACCTT..ACCGTCTTGCTCGTCTTAAATCGATCAGTGGAATCATCTTTTGAGTCCGGTCTGACTATGTGTGATAATTTGATCACATAGAATGTGGGCTT.GCCCTACAACCGC..A.TCT.TGAAG.GA..CTCTGCTTCCAACACGGAATGGT.CTT...GG.ACCATCGTTAGCCTTTTAATGCT..................TGACCT Tilletia_horrida_338 TCATTAGTGAATTTCA...CGGCCTTCTCTCTCTGAGAGTTGGCCAATCTTCTCTACTATCC...........AACCC......AGACTACGGA....GGGTGAACATTT......AGTG.ATCCTG.TCCGGATTGGCGCTAAGTCGTTGATACTTTCGAGTGTCGAC......GACTTGGTTCCTATTTCAAC..TCTTTAAAAGC.........ATAGAATGATAAAAC.ATTGTCTTCGGACA.GAAAC.AATATACAACTTTTGACAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATTTTTGAACGCACCTTGCGCCCTTGGGTATTCTCAAGGGCATGCCTGTTTGAGTGTCATAACAATCTCAACTCCCAGTTTTTTTGAAAGAGAAGACTGCTTGGAGTTGGTGATGGGCGTTT...GCCAGA.CTT...CAGTCTTGCTCGCCTGAAATATATCAGTGGA.TC.TCTT.TGGGTC.GGTCTGACTATGTGTGATAATTTGATCGCATAGGATGTG..CTC.TGC..GCAACCGGCTTTACATTGGA..GACTTTCTGCTTCTAACACGGAATGGCTAGA...........GAGTAAC.TTTCTG.CCATCGTTAGCTATATT.GTCTGACCT Tilletia_horrida_358 TCATTAGTGAATTTCA...CGGCCTTCTCTCTCTGAGAGTTGGCCAATCTTCTCTACTATCC...........AACCC......AGACTACGGA....GGGTGAACATTT......AGTG.ATCCTG.TCCGGATTGGCGCTAAGTCGTTGATACTTTCGAGTGTCGAC......GACTTGGTTCCTATTTCAAC..TCTTTAAAAGC.........ATAGAATGATAAAAC.ATTGTCTTCGGACA.GAAAC.AATATACAACTTTTGACAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTGGGTATTCTCAAGGGCATGCCTGTTTGAGTGTCATAACAATCTCAACTCTCAGTTTTTTTGAAAGAGAAGACTGCTTGGAGTTGGTGATGGGCGTTT...GCCAGA.CTT...CAGTCTTGCTCGCCTGAAATATATCAGTGGA.TC.TCTT.TGGGTC.GGTCTGACTATGTGTGATAATTTGATCGCATAGGATGTG..CTC.TGC..ACAACCGGCTTTTCATTGGA..GACTTTCTGCTTCTAACACGGAATGGCTAGA...........GAGTAAC.TTTCTG.CCATCGTTAGCTATATT.GTCTGACCT Tilletia_horrida_WSP_69539 TCATTAGTGAATTTCA...CGGCCTTCTCTCTCTGAGAGTTGGCCAATCTTCTCTACTATCC...........AACCC......AGACTACGGA....GGGTGAACATTT......AGTG.ATCCTG.TCCGGATTGGCGCTAAGTCGTTGATACTTTCGAGTGTCGAC......GACTTGGTTCCTATTTCAAC..TCTTTAAAAGC.........ATAGAATGATAAAAC.ATTGTCTTCGGACA.GAAAC.AATATACAACTTTTGACAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTGGGTATTCTCAAGGGCATGCCTGTTTGAGTGTCATAACAATCTCAACTCCCAGTTTTTTTGAAAGAGAAGACTGCTTGGAGTTGGTGATGGGCGTTT...GCCAGA.CTT...CAGTCTTGCTCGCCTGAAATATATCAGTGGA.TC.TCTT.TGGGTC.GGTCTGACTATGTGTGATAATTTGATCGCATAGGATGTG..CTC.TGC..GCAACCGGCTTTACATTGGA..GACTTTCTGCTTCTAACACGGAATGGCTAGA...........GAGTAAC.TTTCTG.CCATCGTTAGCTATATT.GTCTGACCT Tilletia_indica_BC386 TCATTAGTGAATTAC....GGAGCTCTTCTTCGGAAGAG.....TCTCCTTCTCTTTTATCC..........CAACAC.....CAAACTACGGAAG..GAACGAGGCCTTGCGCTGAGTA...CCTG.TCCGGAT.GGAACAGAGTTGCTGGTACTTCGGTATTGGCAG...CG.CTGCTCCAACCCTTTTAAAC..ACTTAAGAATT.........AAAGAATGTTAAAACTATTGTCTTCGGACAT.AAACTAATATACAACTTTTGACAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTGGGTATTCTCAAGGGCATGCCTGTTTGAGTGTCATAATACTCTCAACTCTCAATCTTTTTGTAAGAGAAGATTGCTTGGAGTTGGTGATGGGCGCTT...GCCAGATATA..ACAGTCTTGCTCGCCTTAAATTAATCAGTGGA.TC.TCTT.CGAGTCCGGTCTGACTATGTGTGATAATTTGATCACATAGAATGTG..CTT.GTC..ACAACCGG..ATTCTGTATA..GAGGCTCTGCTTCCAACACGGAATGATTCTT.C.GGAATCATCGATAGC.TTTGTA.GCT..................TGACCT Tilletia_indica_BC388 TCATTAGTGAATTAC....GGAGCTCTTCTTCGGAAGAG.....TCTCCTTCTCTTTTATCC..........CAACAC.....CAAACTACGGAAG..GAACGAGGCCTTGCGCTGAGTA...CCTG.TCCGGAT.GGAACAGAGTTGCTGGTACTTCGGTATTGGCAG...CG.CTGCTCCAACCCTTTTAAAC..ACTTAAGAATT.........AAAGAATGTTAAAACTATTGTCTTCGGACAT.AAACTAATATACAACTTTTGACAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTGGGTATTCTCAAGGGCATGCCTGTTTGAGTGTCATAATACTCTCAACTCTCAATCTTTTTGTAAGAGAAGATTGCTTGGAGTTGGTGATGGGCGCTT...GCCAGATGTA..ACAGTCTTGCTCGCCTTAAATTAATCAGTGGA.TC.TCTT.CGAGTCCGGTCTGACTATGTGTGATAATTTGATCACATAGAATGTG..CTT.GTC..ACAACCGG..ATTCTGTATA..GAGGCTCTGCTTCCAACACGGAATGATTCTT.C.GGAATCATCGATAGC.TTTGTA.GCT..................TGACCT Tilletia_indica_BC392 TCATTAGTGAATTAC....GGAGCTCTTCTTCGGAAGAG.....TCTCCTTCTCTTTTATCC..........CAACAC.....CAAACTACGGAAG..GAACGAGGCCTTGCGCTGAGTA...CCTG.TCCGGAT.GGAACAGAGTTGCTGGTACTT{AC}GGTATTGGCAG...CG.CTGCTCCAACCCTTTTAAAC..ACTTAAGAATT.........AAAGAATGTTAAAACTATTGTCTTCGGACAT.AAACTAATATACAACTTTTGACAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTGGGTATTCTCAAGGGCATGCCTGTTTGAGTGTCATAATACTCTCAACTCTCAATCTTTTTGTAAGAGAAGATTGCTTGGAGTTGGTGATGGGCGCTT...GCCAGATGTA..ACAGTCTTGCTCGCCTTAAATTAATCAGTGGA.TC.TCTT.CGAGTCCGGTCTGACTATGTGTGATAATTTGATCACATAGAATGTG..CTT.GTC..ACAACCGG..ATTCTGTATA..GAGGCTCTGCTTCCAACACGGAATGATTCTT.C.GGAATCATCGATAGC.TTTGTA.GCT..................TGACCT Tilletia_indica_BC398 TCATTAGTGAATTAC....GGAGCTCTTCTTCGGAAGAG.....TCTCCTTCTCTTTTATCC..........CAACAC.....CAAACTACGGAAG..GAACGAGGCCTTGCGCTGAGTA...CCTG.TCCGGAT.GGAACAGAGTTGCTGGTACTTCGGTATTGGCAG...CG.CTGCTCCAACCCTTTTAAAC..ACTTAAGAATT.........AAAGAATGTTAAAACTATTGTCTTCGGACAT.AAACTAATATACAACTTTTGACAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTGGGTATTCTCAAGGGCATGCCTGTTTGAGTGTCATAATACTCTCAACTCTCAATCTTTTTGTAAGAGAAGATTGCTTGGAGTTGGTGATGGGCGCTT...GCCAGATGTA..ACAGTCTTGCTCGCCTTAAATTAATCAGTGGA.TC.TCTT.CGAGTCCGGTCTGACTATGTGTGATAATTTGATCACATAGAATGTG..CTT.GTC..ACAACCGG..ATTCTGTATA..GAGACTCTGCTTCCAACACGGAATGATTCTT.C.GGAATCATCGATAGC.TTTGTA.GCT..................TGACCT Tilletia_indica_BC405 TCATTAGTGAATTAC....GGAGCTCTTCTTCGGAAGAG.....TCTCCTTCTCTTTTATCC..........CAACAC.....CAAACTACGGAAG..GAACGAGGCCTTGCGCTGAGTA...CCTG.TCCGGAT.GGAACAGA{GT}TTGCTGGTACTTCGGTATTGGCAG...CG.CTGCTCCAACCCTTTTAAAC..ACTTAAGAATT.........AAAGAATGTTAAAACTATTGTCTTCGGACAT.AAACTAATATACAACTTTTGACAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTGGGTATTCTCAAGGGCATGCCTGTTTGAGTGTCATAATACTCTCAACTCTCAATCTTTTTGTAAGAGAAGATTGCTTGGAGTTGGTGATGGGCGCTT...GCCAGATGTA..ACAGTCTTGCTCGCCTTAAATTAATCAGTGGA.TC.TCTT.CGAGTCCGGTCTGACTATGTGTGATAATTTGATCACATAGAATGTG..CTT.GTC..ACAACCGG..ATTCTGTATA..GAGGCTCTGCTTCCAACACGGAATGATTCTT.C.GGAATCATCGATAGC.TTTGTA.GCT..................TGACCT Tilletia_indica_LC1012 TCATTAGTGAATTAC....GGAGCTCTTCTTCGGAAGAG.....TCTCCTTCTCTTTTATCC..........CAACAC.....CAAACTACGGAAG..GAACGAGGCCTTGCGCTGAGTA...CCTG.TCCGGAT.GGAACAGAGTTGCTGGTACTTCGGTATTGGCAG...CG.CTGCTCCAACCCTTTTAAAC..ACTTAAGAATT.........AAAGAATGTTAAAACTATTGTCTTCGGACAT.AAACTAATATACAACTTTTGACAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTGGGTATTCTCAAGGGCATGCCTGTTTGAGTGTCATAATACTCTCAACTCTCAATCTTTTTGTAAGAGAAGCTTGCTTGGAGTTGGTGATGGGCGCTT...GCCAGATGTA..ACAGTCTTGCTCGCCTTAAATTAATCAGTGGA.TC.TCTT.CGAGTCCGGTCTGACTATGTGTGATAATTTGATCACATAGAATGTG..CTT.GTC..ACAACCGG..ATTCTGTATA..GAGGCTCTGCTTCCAACACGGAATGATTCTT.C.GGAATCATCGATAGC.TTTGTA.GCT..................TGACCT Tilletia_laevis_V766 TCATTAGTGAATCTTTATTGCCGTACTTCTCTTCGAGAGG....TCGGCTCTAATCCCATCA..........TCTATT.ATC.CAAACACAAGACTACGGAGGGGTGGCTGCGTTGGTGGCTCCCTGCTCCGGATTGGTTCTGGGT..CAGATCATT.AACACTGGCTGGCTCGGTTCCTACAAC.CTTTTCAAC..TC..ATGAATC.........ATAGAATGTTAAACCCATTGTCTTCGGACTTGAAACTAAA.TACAACTTTTGACAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTGGGTATTCTCAAGGGCATGCCTGTTTGAGTGTCATAACATGTTCAGCTCCCAGCCTTTTTGAAAGAGAAGGTTGCTTGGAGTTGGTGATGGACGTTTTT.GCCAGACCTT..ACCGTCTTGCTCGTCTTAAATCGATCAGTGGAATCATCTTTTGAGTCCGGTCTGACTATGTGTGATAATTTGATCACATAGAATGTGGGCTT.GCCCTACAACCGC..A.TCT.TGAAG.GA..CTCTGCTTCCAACACGGAATGGT.CTT...GG.ACCATCGTTAGCCTTTTAATGCT..................TGACCT Tilletia_tritici_T1 TCATTAGTGAATCTTTATTGCCGTACTTCTCTTCGAGAGG....TCGGCTCTAATCCCATCA..........TCTATT.ATC.CAAACACAAGACTACGGAGGGGTGGCTGCGTTGGTGGCTCCCTGCTCCGGATTGGTTCTGGGT..CAGATCATT.AACACTGGCTGGCTCGGTTCCTACAAC.CTTTTCAAC..TC..ATGAATC.........ATAGAATGTTAAACCCATTGTCTTCGGACTTGAAACTAAA.TACAACTTTTGACAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTGGGTATTCTCAAGGGCATGCCTGTTTGAGTGTCATAACATGTTCAGCTCCCAGCCTTTTTGAAAGAGAAGGTTGCTTGGAGTTGGTGATGGACGTTTTTTGCCAGACCTT..ACCGTCTTGCTCGTCTTAAATCGATCAGTGGAATCATCTTTTGAGTCCGGTCTGACTATGTGTGATAATTTGATCACATAGAATGTGGGCTT.GCCCTACAACCGC..A.TCT.TGAAG.GA..CTCTGCTTCCAACACGGAATGGT.CTT...GG.ACCATCGTTAGCCTTTTAATGCT..................TGACCT Tilletia_walkeri_BC027 TCATTAGTGAATTAC....GGAGCTCTTCTTCGGAAGAG.....TCTCCTTCTCTTTTATCC..........CAACAC.....CAAACTACGGAAG..GAACAAGGCCTTGCGCTGAGTA...CCTG.TCCGGAT.GGAACAGAGTTGCTAGTACTTCGGTATTGGCAG...CG.CTGCTCCAACCCTTTTAAAC..ACTTAAGAATT.........AAAGAATGTTAAAACTATTGTCTTCGGACAT.AAACTAATATACAACTTTTGACAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTGGGTATTCTCAAGGGCATGCCTGTTTGAGTGTCATAATACTCTCAACTCTCAATCTTTTTGTAAGAGAAGATTGCTTGGAGTTGGTGATGGGCGCTT...GCCAGATGTA..ACAGTCTTGCTCGCCTTAAATTAATCAGTGGA.TC.TCTT.CGAGTCCGGTCTGACTATGTGTGATAATTTGATCACATAGAATGTG..CTT.GTC..ACAACCGG..ATTCTGTATA..GAGGCTCTGCTTCCAACACGGAATGATTCTT.C.GGAATCATCGATAGC.TTTGTA.GCT..................TGACCT Tilletia_walkeri_BC188 TCATTAGTGAATTAC....GGAGCTCTTCTTCGGAAGAG.....TCTCCTTCTCTTTTATCC..........CAACAC.....CAAACTACGGAAG..GAACAAGGCCTTGCGCTGAGTA...CCTG.TCCGGAT.GGAACAGAGTTGCTAGTACTTCGGTATTGGCAG...CG.CTGCTCCAACCCTTTTAAAC..ACTTAAGAATT.........AAAGAATGTTAAAACTATTGTCTTCGGACAT.AAACTAATATACAACTTTTGACAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTGGGTATTCTCAAGGGCATGCCTGTTTGAGTGTCATAATACTCTCAACTCTCAATCTTTTTGTAAGAGAAGATTGCTTGGAGTTGGTGATGGGCGCTT...GCCAGATGTA..ACAGTCTTGCTCGCCTTAAATTAATCAGTGGA.TC.TCTT.CGAGTCCGGTCTGACTATGTGTGATAATTTGATCACATAGAATGTG..CTT.GTC..ACAACCGG..ATTCTGTATA..GAGGCTCTGCTTCCAACACGGAATGATTCTT.C.GGAATCATCGATAGC.TTTGTA.GCT..................TGACCT Tilletia_walkeri_BC447 TCATTAGTGAATTAC....GGAGCTCTTCTTCGGAAGAG.....TCTCCTTCTCTTTTATCC..........CAACAC.....CAAACTACGGAAG..GAACAAGGCCTTGCGCTGAGTA...CCTG.TCCGGAT.GGAACAGAGTTGCTAGTACTTCGGTATTGGCAG...CG.CTGCTCCAACCCTTTTAAAC..ACTTAAGAATT.........AAAGAATGTTAAAACTATTGTCTTCGGACAT.AAACTAATATACAACTTTTGACAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTGGGTATTCTCAAGGGCATGCCTGTTTGAGTGTCATAATACTCTCAACTCTCAATCTTTTTGTAAGAGAAAATTGCTTGGAGTTGGTGATGGGCGCTT...GCCAGATGTA..ACAGTCTTGCTCGCCTTAAATTAATCAGTGGA.TC.TCTT.CGAGTCCGGTCTGACTATGTGTGATAATTTGATCACATAGAATGTG..CTT.GTC..ACAACCGG..ATTCTGTATA..GAGGCTCTGCTTCCAACACGGAATGATTCTT.C.GGAATCATCGATAGC.TTTGTA.GCT..................TGACCT Tilletia_walkeri_BC449 TCATTAGTGAATTAC....GGAGCTCTTCTTCGGAAGAG.....TCTCCTTCTCTTTTATCC..........CAACAC.....CAAACTACGGAAG..GAACAAGGCCTTGCGCTGAGTA...CCTG.TCCGGAT.GGAACAGAGTTGCTAGTACTTCGGTATTGGCAG...CG.CTGCTCCAACCCTTTTAAAC..ACTTAAGAATT.........AAAGAATGTTAAAACTATTGTCTTCGGACAT.AAACTAATATACAACTTTTGACAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTGGGTATTCTCAAGGGCATGCCTGTTTGAGTGTCATAATACTCTCAACTCTCAATCTTTTTGTAAGAGAAGATTGCTTGGAGTTGGTGATGGGCGCTT...GCCAGATGTA..ACAGTCTTGCTCGCCTTAAATTAATCAGTGGA.TC.TCTT.CGAGTCCGGTCTGACTATGTGTGATAATTTGATCACATAGAATGTG..CTT.GTC..ACAACCGG..ATTCTGTATA..GAGGCTCTGCTTCCAACACGGAATGATTCTT.C.GGAATCATCGATAGC.TTTGTA.GCT..................TGACCT Tilletia_walkeri_BC456 TCATTAGTGAATTAC....GGAGCTCTTCTTCGGAAGAG.....TCTCCTTCTCTTTTATCC..........CAACAC.....CAAACTACGGAAG..GAACAAGGCCTTGCGCTGAGTA...CCTG.TCCGGAT.GGAACAGAGTTGCTAGTACTTCGGTATTGGCAG...CG.CTGCTCCAACCCTTTTAAAC..ACTTAAGAATT.........AAAGAATGTTAAAACTATTGTCTTCGGACAT.AAACTAATATACAACTTTTGACAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTGGGTATTCTCAAGGGCATGCCTGTTTGAGTGTCATAATACTCTCAACTCTCAATCTTTTTGTAAGAGAAGATTGCTTGGAGTTGGTGATGGGCGCTT...GCCAGATGTA..ACAGTCTTGCTCGCCTTAAATTAATCAGTGGA.TC.TCTT.CGAGTCCGGTCTGACTATGTGTGATAATTTGATCACATAGAATGTG..CTT.GTC..ACAACCGG..ATTCTGTATA..GAGGCTCTGCTTCCAACACGGAATGATTCTT.C.GGAATCATCGATAGC.TTTGTA.GCT..................TGACCT Tilletia_walkeri_LC1123 TCATTAGTGAATTAC....GGAGCTCTTCTTCGGAAGAG.....TCTCCTTCTCTTTTATCC..........CAACAC.....CAAACTACGGAAG..GAACAAGGCCTTGCGCTGAGTA...CCTG.TCCGGAT.GGAACAGAGTTGCTAGTACTTCGGTATTGGCAG...CG.CTGCTCCAACCCTTTTAAAC..ACTTAAGAATT.........AAAGAATGTTAAAACTATTGTCTTCGGACAT.AAACTAATATACAACTTTTGACAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTGGGTATTCTCAAGGGCATGCCTGTTTGAGTGTCATAATACTCTCAACTCTCAATCTTTTTGTAAGAGAAGATTGCTTGGAGTTGGTGATGGGCGCTT...GCCAGATGTA..ACAGTCTTGCTCGCCTTAAATTAATCAGTGGA.TC.TCTT.CGAGTCCGGTCTGACTATGTGTGATAATTTGATCACATAGAATGTG..CTT.GTC..ACAACCGG..ATTCTGTATA..GAGGCTCTGCTTCCAACACGGAATGATTCTT.C.GGAATCATCGATAGC.TTTGTA.GCT..................TGACCT ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = ITS_rDNA) = N: 1-697; CODONPOSSET CodonPositions (CHARACTERS = ITS_rDNA) = N: 1-697; END; BEGIN TREES; TITLE Tb5983; LINK TAXA = Taxa1; TRANSLATE 1 Tilletia_goloskokovii_321, 2 Tilletia_fusca_141, 3 Tilletia_cerebrina_168, 4 Tilletia_tritici_T1, 5 Tilletia_guyotiana_171, 6 Tilletia_bromi_148, 7 Tilletia_laevis_V766, 8 Tilletia_controversa_V412, 9 Tilletia_walkeri_BC447, 10 Tilletia_walkeri_BC456, 11 Tilletia_walkeri_BC027, 12 Tilletia_walkeri_BC449, 13 Tilletia_walkeri_BC188, 14 Tilletia_walkeri_LC1123, 15 Tilletia_indica_BC388, 16 Tilletia_indica_LC1012, 17 Tilletia_indica_BC392, 18 Tilletia_indica_BC405, 19 Tilletia_indica_BC398, 20 Tilletia_indica_BC386, 21 Tilletia_horrida_358, 22 Tilletia_horrida_338, 23 Tilletia_horrida_WSP_69539, 24 Tilletia_barclyana_637, 25 Tilletia_barclayana_828, 26 Tilletia_barclayana_832; TREE Fig._3 = [&R] (26,((25,(((23,22),21)Tilletia_horrida,((20,19,18,17,16,15,(14,13,12,11,10,9)Tilletia_walkeri),((((8,(((7,4),5),6)),1),3),2)))),24))Tilletia; END;