#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on March 29, 2024; 7:59 GMT TreeBASE (cc) 1994-2008 Study reference: Olson M.E. 2002. Intergeneric relationships within the Caricaceae-Moringaceae clade (Brassicales), and potential morphological synapomorphies of the clade and its families. International Journal of Plant Sciences, 163(1): 51–65. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S801] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=8; TAXLABELS Carica_microcarpa_AF378623 Cylicomorpha_AF378626 Cylicomorpha_AF378627 Jacaratia_corumbensis_AF378622 Jarilla_chocola_AF378624 Jarilla_heterophylla_AF378625 Moringa_drouhardii_AF378628 Moringa_longituba_AF378643 ; END; BEGIN TAXA; TITLE Taxa2; DIMENSIONS NTAX=8; TAXLABELS Carica_microcarpa_AF378578 Cylicomorpha_AF378579 Cylicomorpha_AF378580 Jacaratia_corumbensis_AF405245 Jarilla_chocola_AF378577 Jarilla_heterophylla_AF378576 Moringa_drouhardii_AF378581 Moringa_longituba_AF378598 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M209] TITLE ITS_Caricaceae; LINK TAXA = Taxa2; DIMENSIONS NCHAR=570; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Carica_microcarpa_AF378578 GTAACAGCTTT-GGACGTGTCGTCTT-GCTGGG-CGCTTGATCAAAA---TAT--GAG-CCCCGCAAA--GGGGCGCGCGAGCCCCGGAGTTGTTT-GGGG--CCGCGCTTTTCGCAGTTCCTTGT----AC--TTGTTTTCTCGCGAGCGGGCAGCAGGGCACAAGCCACACGCCGCCCACGTTTAGATATTGCTGAAAGCCGTTGCCTATAGAGCCGACAA--------------------CTTGACGCTATGAACGACACTTAACGTCTTAGGGCGCTTAGTAGCTCAGAAACTTGCGTTCAACGCGGGATCCGGTAGGCCGACTCCCGTGCAGACGGACCCACAGTG-CGTGTCAGCGGGGGTTTTT---AGGGTC-GCTTCCAGGCC-CCCGCCT-ACGACCGGAGGGCAAGTGCGCCGCGT-GCC-GGCATCG----CCAACCGGGTTTAT-GCTTCGAGCCCTCCGCT-CGCCGTTCCTGCTCAACCACCAAATTGTTTG-CGATGC-GATAGAA-GCGGACCG-AGTGGCGCTGGGGTCCAGTCCGCCCTGCTGGGCGACTT Cylicomorpha_AF378579 GTAACAGCTTT-GGACGTATCGTCTT-GTTGGG-CTCTTGATCAACA--CTGT---ATTTCCCTCAACGAGGG---------TCCCAGAGTTGTTT-GGGG--CCGCACC?TTCGCGGTTCCTTTT----ACTTTTGTTTTCTCACGAGCGAATAGCAGAGCACGATCCACATGCTACTCGCGTATAAATTTTGCTGAGAGCCGTTGCCTATAGAGCCGAGAGCGTAGCTACTTCTTGCATCGCTTTACGCTATGAACCACACTTAACGTCTTAGGGCGCTTAGTAGCTCAAAAACTTGCGTTCAACGCGGGATCCGGTAGACCGACTCCCGTGCAGACGGACCCGCAGTG-CGTATCAGTGGGA-GTTTT----TGCAGTGCTTCCTAACA-CCCGCCT-ACTACTGGAGGGCAAACACGCGAA-T-GCCACAAATCG----CCTACCAGATTTATAGTTAAGAGCTCGCCGTT-CATGGAGCTTGCTCAACCACCAAATAATTTTTAGA-GCTTCGAGAAA-CA-AGCTAAACAACGCTGGGGTCCAGT?CGCCCTGATGGGCAACTA Cylicomorpha_AF378580 GTAACAGCTTT-GGACGTATCGTCTT-GTTGGG-CTCTTGATCAACA--CTGT---ATTTCCCTCAACGAGGG---------TCCCAGAGTTGTTT-GGGG--CCGCACCTTTCGCGGTTCCTTTT----ACTTTTGTTTTCTCACGAGCGAATAGCAGAGCACGATCCACATGCTACTCGCGTATAAATTTTGCTGAGAGCCGTTGCCTATAGAGCCGAGAGCGTAGCTACTTCTTGCATCGCTTTACGCTATGAACCACACTTAACGTCTTAGGGCGCTTAGTAGCTCAAAAACTTGCGTTCAACGCGGGATCCGGTAGACCGACTCCCGTGCAGACGGACCCGCAGTG-CGTATCAGTGGGA-GTTTT----TGCAGTGCTTCCTAACA-CCCGCCT-ACTACTGGAGGGCAAACACGCGAA-T-GCCACAAATCG----CCTACCAGATTTATAGTTAAGAGCTCGCCGTT-CATGGAGCTTGCTCAACCACCAAATAATTTTTAGA-GCTTCGAGAAA-CA-AGCTAAACAACGCTGGGGTCCAGTCCGCCCTGATGGG---TTC Jacaratia_corumbensis_AF405245 GTAACAGTTTT-GGACATGTCGTCTT-GCTGAA-CGTTTGATCAACA--CTGT--TACCTCCTACAAC--GGGGCGCGCCAACCCCGGAGTTGTTT-AGAG--CCACGT?TTTCGGAATTCCTTTT----AC--TTACCTTCTCGTGAACGGGCAGCA-AGCACAAGACACACGCCGCTCGCGTTTAGGTTTTACCGATAGCCGTTGTATATAGAGCCGAGAGCGTAGCTACTTCTTGTATCGCTTTACGCTATGAACTACATTTAACATCTTAGTATACTTAGTAGTCCAGAAACTTGCGTTCAACACGGGGTTCGGTAGGTCGACTCCCGTACAAACGGATTCACAATA-CGTATCAGCGGGGTTTTTTTTTAGGGAT-GCTTCCAGACG-TCCACTT-ACAACCGGA?GGCAAGTACAC-GG-TGGGCTGGC--------------------------------------------------------------------------------------------------------------------------------------- Jarilla_chocola_AF378577 GTAACAGCTTT-GGACGTGTCGTCTT-GCTGGG-CTCTTAACCA-CAAACTGT--GAG--CCCACAAC--GGGGCGCGCCGGACCCGGAGTTGTTT-GGTG--CCGCGCCTTTCGCAGTTCCTTGC----AC--TTGTTTTCTCGCGAGCGGGCAGCAGGGCACGATCCACGTGCCGCCCGCGTTAAGGTTTTTCTGAGAGCCGTTGCCTATAGAGCCGAGAGCGTAGCTACTTCTTGCATCGCTTTACGCTATGAACCACACTTAACGTCTTAGGGCGCTTAGTAGCTCAGAAACTTGCGTTCAACGCGGGGTCCGGTGGACCGACTCCCGTGCGGACGGACCCACAGTG-C-TGTCAGCAGGGTGTTTTTTTAGGCAC-GCTTCCATACA-CCCGCCTAAAGACCGGAGGGCGTTCGATC-GGGTGGCC-GGCGACG----CCAACCAGGTTTA-CGCTTCGAGCACGCCGCT-CGCCGCTCCTGCTCAACCACCAACTTATTT--CGCTGC-GACAGA--GCAGACCGACGTGTCGCTGGGGTCCAGTCCGCCCTGATGGGCGACTC Jarilla_heterophylla_AF378576 ------------GGACGTGTCGTCTA-GCTGGG-CTCTTAACCA-CGAACTGT--GAG--CCCACAAC--GGGGCGCACCGGACCCGGAGTTGTTT-GGTG--CCGCGCCTTTCGCAGTTCCTTGT----AC--TTGCTTTCTCGCAAGCGGACAGCAGGGCAC?AGCCACGCGCCGCCCGCGTTAAGGTTTTGCTGAGAGCCGTTGCCTATAGAGCCGAGAGCGTAGCTACTTCTTGCATCGCTTTACGCTATGAACCACACTTAACGTCTTAGGGCGCTTAGTAGCTCAGAAACTTGCGTTCAACGCGGGGTCCGGTAGACCAACTCCCGTGCAGACGGACCCACAGTG-C-TGTCAGCAGGGTGTTTTTT-ATACAC-GCTTCCAGACA-CCCGCCT-AAGACCGGAGGGCGTTCGCTC-GGGTGGCC-GGCGACG----CCAACCATGTTTA-CGCTTCGAGCACGCC?CT-CGTCGCTCCTGCTCAACCACCAACTTATTT--CGCTGC-GACAGA--GCAGACCGACGTGGCGCTGGGGTCCAGTCCGCCCTGATGGGCGACTC Moringa_drouhardii_AF378581 --AACAGCTTT-GAACGAATCA-CTTTG-TGGGACACTTATACAACA-TTTGTGCGAGTTCCCCGCTC--GGG-CGTGTTGTTCCCAGAGTTGTTTTGTGTGTCAGGTCCTA-CGCGGTTC?TTAAGTTTAC--TTA----CTCGTACGGGGGTAGTGGAGCTAGAGCCACGTACCGTCCGAGTATAGATTTTACTAAGAGCCGTTACCTATAGAGCCGATAGCGTAACTACTTCTTGCATCACTTTACTCTATGAATCACACTTAACATCTTAGAACACTCGGTAACTCAGAAACTTGCGTTCAATGTGGGTTTCGGTAGTTCAACCCCCGTGCAGACGGATCCACAGTA-CGTA?CAGCGGGG-GCT------TAGGGAAATTCCTAGCACCCAGTCT-ATAACCGGA----TAAGACGTGG---------AAATCGAGAGCCAACCGGATTTTTAC-TCAGAGTTCGCTGCGGCAC--AGT--GTCGAACCGTCACCATCTTTTTCGAAGT-ACGAGGAAGCA--CGTATTCTACGCTGGAATTCAATTCGTCCTGGTAGGT{AG}ACTC Moringa_longituba_AF378598 GTAACAGCTTTTGAGCGAGTCG-CTCTGCTGGG-CGCTTGTACAAAA-TTTGTGTGACCTCCCC{AG}CTC--GGGGCGCGCCGTTCCCAGGGTTGTTTTGGGTGTCGCGCCCTA-CGCGGTTCCATGTCCTTAC--CTC----CTAGTGCGGGGGCAGCCGGGCTAGAGCCACGCACCGCCCCAGTACGGATTTTACTGAGAGCCGTTGCCTATAGAGCCGAGAGCGTAGCTACTTCTTGCATCGCTTTACGCTATGAACCACACTTAACGTCTTAGGGCACTTGGTAGCTCAGAAACTTGCGTTCAACGCGGGTTTCGGTAGGCCGGCTCCCGTGCAGACGGACCCACAGTTTCGTAGCAGCGGGG-GCT------TAGGGAAGCCCCTAGCGCCCCGCCT-TTAACCGGAGGGC----ACGCGG---------AGACCGAGCGCCAACCGGATTTTTGC-TCGGAGCTCCCTGCGGCGC--AGT--GCCGAACCGCCACCATCTTTTTCGGAGC-ACGTCGTCGCA--CGCGCTCTACTCTGGGGTCCAGTCCGCCCTCGTGGGCGA-TC ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M208] TITLE trn_G; LINK TAXA = Taxa1; DIMENSIONS NCHAR=317; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Carica_microcarpa_AF378623 --AATGGGCGATGTTACGCTAATAATATA-TTTTTACCTGAAAAACAGCTTGTTCCATTAGGCCGCCTTAG-----TTTTATCTTAGTATTTTTT-ATGGCTTTTAAACTCGTAACTGCGCAAAACAGTTGTTTGGATTACTTTAATCATTTTCTCCTGAGTAAAGTCAATAAATAAAATTATTGATTTATTGTT-----CCAGAAAAAAAAAA--GAAAA-AACCTCCTTAAAACTATC-TATTCCAAGCCGTTTTCCCGAATTAAGTATTGTAT?GTTATAAGACCGTT?TTAGGTATCAA?GG--AATAAAAAG Cylicomorpha_AF378626 GATATGGGCGATGTTACGCTAATAACATA-GTTTTAACTGAAAAACAGCTTGTTCCATTAGGCCGCATTAG-----TTTTATCTTAGTCTTTTTT-ATGGCTTTTAAACTCGTAACTGCGCAAAACAGTTGTTTGGATTATTTTACTCATTTTCTCCTGAGTAAAGTCAATAAATAAAATTATTGATTTATTGTT-----CCAGAAAAAA------GAAAACAACCTCCTTAAAACTATC-TATTCCGAGCCGTTTTCCCGAATTAA------------------ACCGTTCTTAGGTATCAAAG--AAATAAAAAG Cylicomorpha_AF378627 GATATGGGCGATGTTACGCTAATAACATA-TTTTTAACTGAAAAACAGCTTGTTCCATTAGGCCGCATTAG-----TTTTATCTTAGTCTTTTTT-ATGGCTTTTAAACTCGTAACTGCGCAAAACAGTTGTTTGGATTATTTTACTCATTTTCTCCTGAGTAAAGTCAATAAATAAAATTATTGATTTATTGTT-----CCAGAAAAAA------GAAAACAACCTCCTTAAAACTATC-TATTCCGAGCCGTTTTCCCGAATTAA------------------ACCGTTCTTAGGTATCAAAG--AAATAAAAAG Jacaratia_corumbensis_AF378622 GATATGGGCGATGTTACGCTAATAACATA-TTTTTACCTGAAAAACAGCTTATTCCATTAGGCCGCCTTAG-----TTTTATCTTAGTATTTTTT-ATGGCTTTTAAACTCGTAACTGCGCA-------------------------------CTCCTGAGTAAAGTCAATAAATAAAATTATTGATTTATTGTT-----CCAGAAAAATAAAAAAGAAAACAACCTCCTTAAAACTATC-TATTCCAAGCCGTTTTCCCGAATTAAGTATTGTATTTTTATAATACCGTTCTTAGGTATCAAAGG--AATAAAAAG Jarilla_chocola_AF378624 GATATGGGCGATGTTACGCTAATAACATA-TTTTTACCTGAAAAACAGCTTGTTCCATTAGGCCGCATTCG-----TTTTATCTTAGTCTTTTTT-AGGGCTTTTAAACTCGTAACTGCGCAAAACAGTTGTTTGGATTACTTTAATCATTTTCTCCTGAGTAAAGTCAATAAATAAAATTATTGATTTATTGTT-----CCAGAAAAAAAAAAA-?AAAACACCC?CCTTAAAACTATC-TATTCCAAGCCGTTT?CCCGAAT?AAG?AT?G?AGTTTTA?ATTCCCGTTATC?GGTATCAAA?--AAA?AAA?TG Jarilla_heterophylla_AF378625 GATATGGGCGATGTTACGCTAATAACATA-TTTTTACCTGAAAAACAGCTTGTTCCATTAGGCCGCATTCG-----TTTTATCTTAGTCTTTTTT-AGGGCTTTTAAACTCGTAACTGCGCAAAACAGTTGTTTGGATTACTTGAATCATTTTCTCCTGAGTAAAGTCAATAAATAAAATTATTGATTTATTGTT-----CCAGAAAAAAAAAA--GAAA?CA?CCTCCTTAAAACTATC-TATTCCAAGCCGTTTTCCCGAATTAAGTATTGTAGTTTTA?ATT?CCGTTCTCAGGTATCAAAG--AAATAAA?TG Moringa_drouhardii_AF378628 GATATGGGCGATGTTACGCTAATAACATATATTTT-CCTGGAAAACAGCTTGTTCCATTAACCTGCATTAGTTTTATTTTATCTTAGTCTTTTTTTAGGACTTTTAATCTCGTAACTGCGCAAAACAGTTCTCTGGATTACTTTAATCATTTTCTCCCGAGTAAACTCAATAAATCAAATTATTGATTTATTTTATTCTTCCAGAAAAAAAAAAAAGAAACCCCCCCCCTTAAAACTATC-TACCCCGAGTGGTTTCCCCGAACCCAGTATTGTATTTTT?CAAACCCGTTTTTGGGTA?-AA-GGGGAATAAA-TT Moringa_longituba_AF378643 GATATGGGCGATGTTACGCTAATAACATATATTTT-CCTGGAAAACAGCTTGTTCCATTAACCTGCATTAGTTTTATTTTATCTTAGTCTTTTTTTAGGACTTTTAATCTCGTAACTGCGCAAAACAGTTCTCTGGATTACTTTAATCATTTTCTCCCGAATAAACTCAATAAATCAAATTATTGATTTATTTTATTCTTCCAGAAAAAAAAAAA-GAAAACA?CCTCCTTAAAACTATC{CT}TATCCCGAGTGGTTTTCCCGAATCCAGTATTGTATTTTTACATAACCGTT{CT}TTAGGTAT-AAAGGG-AATAAAA-T ; END; BEGIN TREES; TITLE Tb6064; LINK TAXA = Taxa2; TRANSLATE 1 Moringa_longituba_AF378598, 2 Moringa_drouhardii_AF378581, 3 Cylicomorpha_AF378580, 4 Cylicomorpha_AF378579, 5 Carica_microcarpa_AF378578, 6 Jarilla_heterophylla_AF378576, 7 Jarilla_chocola_AF378577, 8 Jacaratia_corumbensis_AF405245; TREE Fig._2A = [&R] ((2,1),((4,3),(8,(5,(6,7))))); END; BEGIN TREES; TITLE Tb6063; LINK TAXA = Taxa1; TRANSLATE 1 Jarilla_chocola_AF378624, 2 Jarilla_heterophylla_AF378625, 3 Jacaratia_corumbensis_AF378622, 4 Carica_microcarpa_AF378623, 5 Cylicomorpha_AF378626, 6 Cylicomorpha_AF378627, 7 Moringa_longituba_AF378643, 8 Moringa_drouhardii_AF378628; TREE Fig._2B = [&R] ((8,7)Moringa,((6,5)Cylicomorpha,((4,3),(2,1)Jarilla))); END;