#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 19, 2024; 16:39 GMT TreeBASE (cc) 1994-2008 Study reference: Bergerow D., Bauer R., & Oberwinkler F. 2001. Muribasidiospora: Microstromatales or Exobasidiales?. Molecular Ecology, 105(7): 798-810. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S872] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=22; TAXLABELS Conidiosporomyces_ayresii Doassansia_epilobii Entyloma_ficariae Entyloma_holwayi Erratomyces_patelii Exobasidium_arescens Exobasidium_rhododendri Exobasidium_vaccinii Georgefischeria_riveae Graphiola_phoenicis Jamesdicksonia_dactylidis Malassezia_furfur Malassezia_sympodialis Microstroma_album Microstroma_juglandis Muribasidiospora_indica Rhamphospora_nymphaeae Rhodotorula_bacarum Rhodotorula_phylloplana Sympodiomycopsis_paphiopedili Ustilago_hordei Volvocispora_triumfetticola ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M332] TITLE LSU_rRNA; LINK TAXA = Taxa1; DIMENSIONS NCHAR=1106; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Conidiosporomyces_ayresii ------TAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGCGGGATGAGCTCAA---ATTTGAAAGCTGGCGCCTTT-GGTGTCCGCATTGTAATCTCGAGAAGTAGTATCTGTGCTGGGCCATGTACAAGTTCCTTGGAATAGGACATCAGAGAGGGTGAGAATCCCGT-ACTTGACATGGAT-T-CCTGTGCTTTGTGATCTGCTCTCTATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTCAAAAGGGAAGCGCTTGAGGTTAGCTATGCACG-CAGTATTCAGCCTTTC--TTTTGGAGGGTGTACTTGCTGTGTTGCAGGCCAGCATCGATTTTGTCTGCTGGAGAAGGGTGGCAGGAATGTGGCACC-CTC-GGGTGTG-TTATAGCCTGCTACTGGATGCAGTGGATGGGATCGAGGACTGCAGTG-TGCCGA-AAGG----CGGCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Doassansia_epilobii -----------------------------------CCCCTTAGTAACGGCGAGTGAAGCGGGAAGAGCTCAA---ATTTGAAAGCTGGCAGCTTC-GCTGTCCGCGTTGTAATCTCGAGAAGTGTTTTCCGCGCCGGACCGCGTACAAGTTCCTTGGAACAGGATGTCATAGAGGGTGAGAACCCCGT-ACTTGACGTGG-CGC-CCGGTGCTTTGTGATACACCCTCAACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATCGGGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTCGAAAGGGAAGCGCTTGAAGTCAGTTATGCACTCCGGGTTTCAGCCTTGC--TTTTGCTTGGTGTATTACCCGGT-TGCAGGTCAGCATCGGTTTTGCCTGTCGGATAAGGGTGGGAGGAACGTAGCACC-CTC-GGGTGTG-TTATAGCCTTCTTCTGGATACGATGGTTGGGACCGAGGATCGCAGCG-CGCCCTTGTGG----CGGACCT-TCG-GGTACT-CTCGCGCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Entyloma_ficariae ------------------------------------ATCCTA----CGGCGAGTGGTA-GGGAAGGTCTCGACACATATGAGAGCTGTGGGTTTT-GGTGTCCGCATTGTAGTCTCGAGATCTGTGTTCCGCGCTGGACCATGTTCAAGTCCCTTGGAATAGGGCGTCATAGAGGGTGAGAATCCCGTGACTTGACATGGCCTC-CCAGTGCTTTGTGATACAGGCTCAACGAGTCGAGTTGTTTGGGAATGCAGCTCAGAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTCAAAAGGGAACCGTTTGAAGTTAGTCATGCTTGCCTGGACTCAGCCTTGC--TTTTGCTTGGTGCATTTCCAGGTTCGCAGGTCAGCATCGGTTTTGACTGCTGGATAAGGGTAGGAGGAATGTGGCACC-CTC-GGGTGTG-TTATAGCCTCTTACTGGATGCAGCAGTTGGGACCGAGGAACGCAGCG-CGCCTTTTTGG----CGGACCT-TCG-GGTACC-TTCGCGCTTAGGATGCTGGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Entyloma_holwayi --------AGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGCGGGAAGAGCTCAA---ATTTGAAAGCTGTTGCCTTT-GGTAACCGCATTGTAATCTCGAGATCTGTTTTCCGCGCTGGACCATGTACAAGTCCCTTGGAATAGGGCGTCATAGAGGGTGAGAATCCCGT-ACTTGACATGGCCTC-CCAGTGCTTTGTGATACAGGCTCAACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTCAAAAGGGAACCGTTTAAAGTTAGTCATGCTTGCCTGGACTCAGCCTTGC--TTTTGCTTGGTGCATTTCCAGGTTAGCAGGTCAGCATCGGTTTTGACTGCTGGATAAGGGTGAGAGGAATGTGGCACC-CTC-GGGTGTG-TTATAGCCTTTCACTGGATGCAGCAGTTGGGACCGAGGAACGCAGCG-CGCCTTTATGG----CGGACCT-TCG-GGTACC-TTCGCGCTTAGGATGCTGGCATAATAGCTTTAAGCGACCCGTCTTGAAACACGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Erratomyces_patelii ----------------------ACTGAACAAGGATTCCCCTAGTAACGGCGAGTGAAGCGGGATGAGCTCAA---ATTTGAAAGCTGGCATCTTC-GGTGTCCGCATTGTAATCTCGAGAAGTGTTTTCTGTGTTGGGTCATGCACAAGTCCCTTGGAAAAGGGCATCAAAGAGGGTGATAATCCCGT-ACTTGGCATGAAT-T-CCAATGCTTTGTGATACGCTCTCTATGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAACTCCATCTAAAGCTAAATATTGGGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTCAAAAGGGAAGCGCTTGAGGTTAGCTATGCATG-CAGGATTCAGCTTTTC--TTTTGAGGAGTGTATTTTCTGTAT-GCAGGCCAGCATCAGTTTTGACTGCTGGATAAGGGTATGAGGAATGTGGCACC-CTC-GGGTGTG-TTATAGCCTTATACTTGATACAGCGGTTGGGACTGAGGAACGCAGTG-CGCCGT-ATGG----CGGGCCT-TCG-GGTACC-TTCGCACTTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Exobasidium_arescens ---------------------------------------CTAATAACGGCGAGTGAAGCGGGATGAGCTCAA---ATTTGAAAGCTGGCAGC----AATGTCCGCGTTGTAATCTCGAGAGTTGTTTTCCGCGCTGGACCACGTACAAGTGCCTTGGAATAGGCTGTCATAGAGGGTGAAAATCCCGT-ACTTGATGTGGACGC-CCAGTGCTTTGTGATACATCTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTCAAAAGGGAAGCATTTGAAGTCAGACGTGTATTGTAGTATTCAGCCTTGC--TTTTGCTTGGTGTATTTGCTATTTTACAGGCCAACATCAGTTTTGAATGACGGATAAGGGTATTTGGAATGTGGCACC-CTC-GGGTGTG-TTATAGCCTTTTACTGGATACGTCGTTTGGGACTGAGGAACGCAGCG-CGCCGT-AAGG----CAGACCT-TCG-GGTACT-TTCGCGCTTAGGATGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Exobasidium_rhododendri -------------------------------------------TAACGGCGAGTGAAGCGGGATGAGCTCAA---ATTTGAAAGCTGGCATC----AATGTCCGCGTGGTAATCTCGAGAGATGTTTTCCGCGCTGGACCACGTACAAGTTCCTTGGAATAGGATGTCATAGAGGGTGAAAATCCCGT-ACTTGATGTGGACGC-CCAGTGCTTTGTGATACGTCTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAGAGAGAGTTAGACAGTACGTGAAATTGTCAAAAGGGAAGCATTTGAAGTCAGACGTGTATTGCAGTATTCAGCCTTGC--TTTTGCTTGGTGTATTTGCTGTAGTACAGGCTTACATCAGTTTTGAGTGACGGATAAGGGTAGAGAGAATGTGGCATC-CTC-GGATGTG-TTATAGTTCT{AT}TACTGGATACGTCC{CT}TTGG?AGTGAGGCAC?CAGC?-CTCC?C-AAGG----CAGACCC-TCG-GGTACT-TTC?AGCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Exobasidium_vaccinii ----------------------------------------------CGGCGAGTGAACCGGGATGAGCTCAA---ATTTGAAAGCTGGCAGT----AATGTCCGCGTTGTAATCTCGAGAGTTGTTTTCCGTGCTGGACCGAGTACAAGTTCCTTGGAATAGGATGTCATAGAGGGTGAAAATCCCGT-ACTTGACTTGGACGC-CCAGTGCTTTGTGATACATCTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTCAAAAGGGAAGCATTTGAAGTCAGACGTGTATTTCAGTATTCAGCCTTGC--TTTTGCTTGGTGT-TTTGCTGTTGTACAGGCCAACATCAGTTTTGAGTGACGGATAAGGGTAGGAGGAATGTGGCACC-CTC-GGGTGTG-TTATAGCCTCTTACTGGATACGTCGTTTGGGACTGAGGAAAGCAGCG-CGCCGT-AAGG----CAGACCT-TCG-GGTACT-TTCGCGCTTAGGATGTTGGCGTAATGGCTTTA------CT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Georgefischeria_riveae -------------------------------------------------GTAGTGAAGCGGGAAGAGCTCAA---ATTTGAAAGCTGAC--CTTTCGG--TCCGCATTGTAATCTCGAGAAGCGTTTGCCGCGACGGGCTGCGTACAAGTCCCTTGGAATAGGGCGTCGTAGAGGGTGAGAATCCCGT-ACTTGATGCAGATCCACCGTTGCTTTGTGATACGCTCTCCACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTCGAAAGGGAAGCGCTTGAAGTCAGTCATGCTGGTCAGAATTCAGCCTTGTATTTCTACTTGGTCTACTTTTTGGCACGCAGGTCAGCATCGGTTTTGGTTACTGGATAAGGGTAAGAGGAAGGTAGCATCTTTCGGGGTGTA-TTATAGCCTCTTACTGGATACAGCAGCTGGGACCGAGGAACGCAGTG-TGCCTTTTTACAAGGTGGGCCTCTCGAGGTACC-TTCGCACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Graphiola_phoenicis ------------------------------------------------GCGAGTGAAGCGGGAAGAGCTCAA---AT{CT}TGAAAGCTGGCAGC----AATGTCCGCGTTGTAATCTCGAGACGTGTTTTCCGTGCTGGACCGTGGACAAGTTTCCTGGAATGGAATGTCATAGAGGGTGAAAACCCCGT-ACTTGCCGCGGACGC-CCAGTGCTTTGTGATGCGCGTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGGGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTCAAAAGGGAAGCATTGGAAGTCAGACGTGCAT-GCAGTACTCAGCCTGGC--TTTGGCTTGGTGTATTTGCTGTTTTGCAGGCCAACATCGATTTTTGGCAACGGATAAGGGTAGAGAGAATGTGGCCTC-CCC-GGAGGTG-TTATAGCTCTCTACTGGATACGTTGCCGGGGATCGAGGAACGCAGCGTCCCCGCAAGGG----CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Jamesdicksonia_dactylidis ----AATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGCGGGATGAGCTCAA---ATTTGAAAGCTGGC--CTCT-GG--TCCGCATTGTAATCTCGAGAAGTGTTTTCCGTGGCGGATTGCGTACAAGTCCCTTGGAATAGGGCGTCGTAGAGGGTGAGAATCCCGT-ACTTGACGCAGGC-T-CCGCTGCTTTGTGATACACTCTCCAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATAGTGGGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTCGAAAGGGAAGCGCTGGAAGTCAGCGATGCCAGTCGAGATTCAGCCTTGC--TTCTGCCTGGTGTACTTTTCGACTGGCAGGCCAGCATCGGTTTGGATCGCCGGAGAAGGGCGAGAGGAAGGTGGCACC-CTC-GGGTGTG-TTATAGCCTCTCGCTGGATACGGCGGCCTGGACCGAGGAACGCAGTG-TGCCATTTCGG----TGGGCCC-TCG-GGCACC-TTCACACTTTGGATGCTGGCGTAATGGCTTTCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTTTGCGAGTCTTTGGGTGGCAAACCCATGGGCGCAATGAAAGTGAATGCAGGTGGGATCCTCACGGAGCACCATCGACCGATCCTGATCTTCTGAGACGGATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Malassezia_furfur ------TAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGAGGGAAGAGCTCAA---ATTTGAAGACTGGTA-CTTC-GGTATCCGCGTTGTAACCTCGAGACACGTTTTCCGTGCGGCGCTATGGACAAGTTCCTTGGAACAGGACATCGTAGAGGGTGAAAATCCCGT-ACTTGCCATGGATGT-ACCGTGCTTTGCGATACGTGCTCTAAGAGTCGAGTTGTTTGGGATTGCAGCTCAAAATGGGTGGTAGACTCCATCTAAAGCTAAATATCGGGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAA-AGTACGTGAAATTGTCGAAAGGGAAGCGCTTGAAGTCAGCCATGCCGCTCAGGACTCAGCCTGGC--TTTTGCTTGGTGTATTTCCTGGGTAGCAAGTCAGCATTGGTTTGGATCGTCGGAGAAGCATAGTCGGAATGTGG-GCC-CTC-GGGCGTG-TTATAGCCTTCTATTGGATACGACGATCTAGACCAAGGAACGCAGCG-GCC--TTATGG----CGGGTCT-TCG-GACACC-TTCGCGCTTAGGATGCTGGCGTAATGGCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Malassezia_sympodialis ------TAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACGGCGAGCGAAGCGGGAAGAGCTCAA---ATTTGAAGACTGG-A-CTCC-GGTGTCCGCGTTGTAATCTCGAGACGTGTTTTCCGTGCGGCTCTATGGACAAGTCCCTTGGAACAGGGCATCGTAGAGGGTGAAAATCCCGT-ACTTGCCATGGATGT-ACCGTGCTTTGTGATACACGCTCTAAGAGTCGAGTTGTTTGGGATTGCAGCTCAAAATGGGTGGTAGACTCCATCTAAAGCTAAATATCGGGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAA-AGTACGTGAAATTGTCGAAAGGGAAGCGCTTGAAGTCAGCCATGCTGCGC-GGACTCAGCC-GGC--TGATGCCTGGTGTATTTCCCAG-CAGCAAGTCAGCATGGATTTGGATCGCCGGAGAAGGGTGGGAGGAATGTGC-ACC-CTC-GGGTGTG-TTA-AGCCTCCTACTGGATACGGCGATTTGGATCCAGGAACGCAGTG-TGC--CTCTGG----CGGGTCT-TCG-GACACC-TTCACACTTAGGATGCTGGCGTAATGGCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Microstroma_album -----------------------------------------AGTAACGGCGAGTGAAGCGGGAAGAGCTCAA---ATTTGAAAGCTGGCGCCTTC-GGCGTCCGCGTTGTAATCTCGAGAAGTGTTTTCCGTGCTGGACCATGTACAAGTTCCTTGGAATAGGACGTCATAGAGGGTGAAAATCCCGT-CCTTGACATGGACGC-CCAGTGCTTTGTGATACGCTCTCCACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTCGAAAGGGAAGCGCTTGAAGTTAGACATGCCTGCTGGAATTCAGCCTTGC-TTTTTGCTTGGTGTATTTTCCAGTGAGCAGGCCAGCATCAGTTTTGTCTGTCGGATAAGGGTAGGAGGAACGTAGCCCCCCTCGGGGGGTG-TTATAGCCTCTTACTGGATACGGCGGATGGGACTGAGGACCGCAGTG-TGCCTTTATGG----CGGGCCT-TCG-GGCACC-TTCACACTTAGGATGCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Microstroma_juglandis -------------------------------------CCCTAGTAACGGCGAGTGAAGCGGGAAGAGCTCAA---ATTTGAAAGCTGGTACCTTC-GGTGCCCGCGTTGTAATCTCGAGAAGTGTTTTCCGTGCTGGACCATGTACAAGTTCCTTGGAATAGGACGTCATAGAGGGTGAAAATCCCGT-ACTTGACATGGACGC-CCAGTGCTTTGTGATACACTCTCCACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTCGAAAGGGAAGCGCTTGAAGTTAGACATGCCTATTAGGATTCAGCCTTGC--TTTTGCTTGGTGTATTTCCTGGTAAGCAGGCCAGCATCAGTTTTGTCTGTCGGATAAGGGTAGGAGGAATGTGGCCCC--TC--GGGGTG-TTATAGCCTCTTACTGGATACGGCGGATGGGACTGAGGACCGCAGTG-CGCCTTTATGG----CGGGCCT-TTT-GGCACC-TTCGCACTTAGGATGCTGGCGTAATGGCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Muribasidiospora_indica -----------------AAAGAAACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGCGGGATGAGCTCAA---ATTTGAAAGCTGGCAGC----AATGTCCGCGTTGTAATCTCGAGAAATGTTTTCCGTGCTGGACCATGTATAAGTTCCTTGGAATAGGATGTCATAGAGGGTGAAAATCCCGT-ACTTGACATGGACGC-CCAGTACTTTGTGATACATTTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTCAAAAGGGAAGCATTTGAAGTCAGACGTGTGTAGGGGTATTCAGCCTTGT--TTTTACTTGGTGTATTTGCCTCTGTACAGGCCAACATCAGTTTCGAGTGACGGATAAGGGTATGGAGAATGTAGCAGT-CTC-GGCTGTGTTTATAGCTCTATACTGGATACGTCGTTTGGGACTGAGGAACGCAGCG-CGCCGT-AAGG----CAGGCCC-TCG-GGCACT-TTCGCGCTTAGGATGTTGGCGTAATGGCTTTAAGTGACCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Rhamphospora_nymphaeae --------------------------------------CCTAGTAACGGCGAGTGAAGCGGGAAGAGCTCAA---ATTTAGAAGCTGGCAGCTTT-GCTGTCCGCGTTGTAATCTCTAGAGGCATTTTCCGTGCCGGACCATGTACAAGTTCCTTGGAACAGGACGTCGCAGAGGGTGAGAACCCCGT-ACTTGACATGG-CGA-CCGGTGCTTTGTGATATGCCCTCCACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTCGAAAGGGAAGCGCTTGAAGTCAGTCATGCGGTTCAGGTTTCAGCCTTGC--TTCTGCTTGGTGTATTACCTGGA-CGCAGGCCAGCATCGGTTTTGCCTGCCGGATAATGGTGGGAGGAATGTGGCACC-CTC-GGGTGTG-TTATAGCCTCCCACTGGATACGGCGGGTGGGACCGAGGAACGCAGCA-CGCC-TTGTGG----CGGACCT-TCG-GGTACC-TTCGTGCTTAGGATGCTG-CGTAATGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Rhodotorula_bacarum ----------------------------------------------CGGCGAGTGAAGCGGGAAGAGCT{CG}AA---ATTTGAAAGCTGGCGCCTTC-GGCGTCCGCGTTGTAATCTCGAGAAGTGTTTTCCGTGCTGGACCATGTACAAGTTCCTTGGAATAGGACGTCATAGAGGGTGAAAATCCCGT-CCTTGACATGGACGC-CCAGTGCTTTGTGATACGCTCTCCACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTCGAAAGGGAAGCGCTTGAAGTTAGACATGCCTGCTGGAATTCAGCCTTGC-TTTTTGCTTGGTGTATTTTCCGGTGAGCAGGCCAGCATCAGTTTTGTCTGTCGGATAAGGGTAGGAGGAACGTAGCCCCCCTCGGGGGGTG-TTATAGCCTCTTACTGGATACGGCGGATGGGACTGAGGACCGCAGTG-TGCCTTTATGG----CGGGCCT-TCG-GGCACC-TTCACACTTAGGATGCTGGCGTAATGGCTTTAAGCGACCCGTCTTGAAACACGGACCGAGGAGTCTAACATGTCTGCGAGTCTTTGGGTGGCAAACCCATGGGCGTAATGAAAGTGAATGCAGGTGGGATCCTTACGGAGCACCATCGACCGATCCGGATCTTCTGTGATGGATTTGAGTAAGAGCATATATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAAGTTTCCCTCAGGATAGCAGAAACTCGCATCAGTTTTATGAGGTAAAGCGAATGATTAGAGGCCTTGGGGATGCAACATCCTTAACCTATTCTCAAACTTTAAATATGTAAGAAGTCCTTGTTAGGTAAGT----------------------- Rhodotorula_phylloplana ----------------------------------------------CGGCGAGTGAAGCGGGAAGAGCTCAA---ATTTGAAAGCTGGTACCTTC-GGTGCCCGCGTTGTAATCTCGAGAAGTGTTTTCCGTGCTGGACCATGTACAAGTTCCTTGGAATAGGACGTCATAGAGGGTGAAAATCCCGT-ACTTGACATGGACGC-CCAGTGCTTTGTGATACACTCTCCACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTCGAAAGGGAAGCGCTTGAAGTTAGACATGCCTATTAGGATTCAGCCTTGC--TTTTGCTTGGTGTATTTCCTGGTAAGCAGGCCAGCATCAGTTTTGTCTGTCGGATAAGGGTAGAAGGAATGTGGCCCC--TC--GGGGTG-TTATAGCCTTTTACTGGATACGGCGGATGGGACTGAGGACCGCAGTG-CGCCTTTATGG----CGGGCCT-TCG-GGCACC-TTCGCACTTAGGATGCTGGCGTAATGGCTTTAAGCGACCCGTCTTGAAACACGGACCGAGGAGTCTAACATGTCTGCGAGTCTTTGGGTGGCAAACCCATAGGCGCAATGAAAGTGAATGCAGGTGGGATCCTTACGGAGCACCATCGACCGATCCGGATCTTCTGTGATGGATTTGAGTAAGAGCATATATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAAGTTTCCCTCAGGATAGCAGAAACTCGCATCAGTTTTATGAGGTAAAGCGAATGATTAGAGGCCTTGGGGATGCAACATCCTTAACCTATTCTCAAACTTTAAATATGTAAGAAGCCCTTGTTACTTAAGTGAACGTGGGCATGCGAATGAGAG Sympodiomycopsis_paphiopedili ----AATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGCGGGAAGAGCTCAA---ATTTGAAAGCTGGTACCTTC-GGTGCCCGCGTTGTAATCTCGAGAAGTGTTTTCCGTGCTGGACCATGTACAAGTTCCTTGGAATAGGACGTCATAGAGGGTGAAAATCCCGT-ACTTGACATGGATGC-CCAGTGCTTTGTGATACACTCTCCACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTCGAAAGGGAAGCGCTTAAAGTTAGACATGCCTATTGGGATTCAGCCTTGC--TTTTGCTTGGTGTATTTCCCGGTGAGCAGGCCAGCATCAGTTTCGGCTGTCGGATAAGGGTTAGAGGAATGTGGCCCC--TC--GGGGTG-TTATAGCCTTTAACTGGATACGGCGGCTGGGACTGAGGAACGCAGCG-TGCCTTTATGG----CGGGCCT-TCG-GGCACC-TTCACGCTTAGGATGCTGGCGTAATGGCTTTAAGCGACCCGTCTTGAAACACGGACCGAGGAGTCTAACATGTCTGCGAGTCTTTGGGTGACAAACCCATAGGCGCAATGAAAGTGAATGCAGGTGGGATCCTCACGGAGCACCATCGACCGATCCGGATTTTCTATGATGGATTTGAGTAAGAGCATATATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ustilago_hordei ----------------------------------GGTCCCTAGTAACGGCGAGTGAAGAGGGAAGAGCCCAA---GATTGAAAGCTGGCGTCTTT-GGCGTCCGCATTGTAA-CTCAAGAAGTGTTTTCCGCTTCGGACCATGCCTAAGTCCCTTGGAA-AAGGCATCATAGAGGGTGATAATCCCGT-ACATGGCATGGAGCGCCCGAAGCTTTGTGATAC-CTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGCCATCTAAGGCTAAATATTGGGGAGAGACCGATACGGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTTAAAC-GTACGTGAAATTGCCAAAAGGGAAGGGTAGGAGGTCAGAGATGCGGTCTGGGATTCAGCCTTGC--TTTTGCTGGGTGTTTTTCTCAGTT-GCAGGCCAACGTCGGTTTTGGGCGCTGGAGAAGGGT-GAAGGAATGTGGCACT-CTC-GGGGGTG-T-ATAGCCTTCTACTG-ATACAGTGACCGAGACCGAGGA---CAGCA-GGTACTCCGAA-----GGCGCCGTCG-GGCACCTTTCATTAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Volvocispora_triumfetticola -------------------------TGACAAGGATTCCCCTAGTAACGGCGA{CG}TGAAGCGGGAAGAGCTCAA---CTTTGTAAGCTGGTACCTTT-GGTGCCCGCGTTGTAACCTCGAGAAGTGTTTTCCGTGTTGGACCATGTACAAGTTCCTTGGAATAGGACGTCATAGAGGGTGAAAATCCCGT-ACTTGACATGGACGC-CCAATGCTTTGTGATACACTCTCCACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTCGAAAGGGAAGCGCTTGAAGTTAGACGTGCTTGCCGGGATTCAGCCTTGC--TTCTGCAGGGTGTATTTCCCGGTACGCAGGCCAGCATCAGTTTGGCCTGCCGGATAAGGGTAGGAGGAATGTGGCCCCACTCGTGGGGTG-TTA-AGCCTCCTACTGGATACGGCGGGCCGGACTGAGGATCGCAGTG-CGCCCTTGTGG----CGGGCCT-TCG-GGCACC-TTCGCACTTAGGATGCTGGCGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = LSU_rRNA) = N: 1-1106; CODONPOSSET CodonPositions (CHARACTERS = LSU_rRNA) = N: 1-1106; END; BEGIN TREES; TITLE Tb6227; LINK TAXA = Taxa1; TRANSLATE 1 Ustilago_hordei, 2 Graphiola_phoenicis, 3 Muribasidiospora_indica, 4 Exobasidium_vaccinii, 5 Exobasidium_rhododendri, 6 Exobasidium_arescens, 7 Georgefischeria_riveae, 8 Jamesdicksonia_dactylidis, 9 Entyloma_ficariae, 10 Entyloma_holwayi, 11 Doassansia_epilobii, 12 Rhamphospora_nymphaeae, 13 Volvocispora_triumfetticola, 14 Sympodiomycopsis_paphiopedili, 15 Rhodotorula_phylloplana, 16 Microstroma_juglandis, 17 Rhodotorula_bacarum, 18 Microstroma_album, 19 Malassezia_sympodialis, 20 Malassezia_furfur, 21 Conidiosporomyces_ayresii, 22 Erratomyces_patelii; TREE Fig._34 = [&R] (((((((((18,17),14),16,15),13),((((6,4),5),3),2),(12,11)),(10,9)),(22,21)),((20,19),(8,7))),1); END; BEGIN TREES; TITLE Tb6226; LINK TAXA = Taxa1; TRANSLATE 1 Ustilago_hordei, 2 Graphiola_phoenicis, 3 Muribasidiospora_indica, 4 Exobasidium_vaccinii, 5 Exobasidium_rhododendri, 6 Exobasidium_arescens, 7 Georgefischeria_riveae, 8 Jamesdicksonia_dactylidis, 9 Entyloma_ficariae, 10 Entyloma_holwayi, 11 Doassansia_epilobii, 12 Rhamphospora_nymphaeae, 13 Volvocispora_triumfetticola, 14 Sympodiomycopsis_paphiopedili, 15 Rhodotorula_phylloplana, 16 Microstroma_juglandis, 17 Rhodotorula_bacarum, 18 Microstroma_album, 19 Malassezia_sympodialis, 20 Malassezia_furfur, 21 Conidiosporomyces_ayresii, 22 Erratomyces_patelii; TREE Fig._33 = [&R] ((((((((((16,15),14),(18,17)),13),((12,11),(10,9))),((((6,5),4),3),2)),(20,19)),(8,7)),(22,21)),1); END;