#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 19, 2024; 21:25 GMT TreeBASE (cc) 1994-2008 Study reference: Schneider H., Smith A., & Pryer K. 2009. Is Morphology Really at Odds with Molecules in Estimating Fern Phylogeny?. Systematic Botany, 34(3): 455-475. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S9941] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=35; TAXLABELS Angiopteris Anthoceros Austrobaileya Blechnum Botrychium Chloranthus Cyathea Cycas Danaea Dicksonia Equisetum1 Equisetum2 Ginkgo Gleichenia Gnetum Haplomitrium Huperzia Hymenophyllum Isoetes Lygodium Marattia Marchantia Marsilea Ophioglossum Osmunda Phanerosorus Pinus Plagiogyria Polytrichum Psilotum Pteridium Salvinia Selaginella Sphagnum Tmesipteris ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M4627] TITLE ; LINK TAXA = Taxa1; DIMENSIONS NCHAR=136; FORMAT DATATYPE=Standard SYMBOLS= "0 1 2 3 4" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 ] [ . . . . . . . . . . . . . . . ] Angiopteris 0110100210111000034000110410110000010011010100000001{01}0120111001000??11100000??00000110100111011002200000000300110221?0100110001110101101 Anthoceros 00???????????????????00?0???0??0?0?00????????????0?0???2000????00???00102000??0000011000??1000000?200000010001000000010011000100100?0000 Austrobaileya 01320?02110001010401111200011001100101100001000001111111100??0?0????00100000??0111123020021000?1023000200?1???232??1?0120??2121130201111 Blechnum 011{02}11021010001103000011{01}400110100010011000020100011001020110210010000111221311000100012{01}0010110012000000114001202211010111001202020111? Botrychium 01011102100000000301001{12}020{01}1000000100??1?0110000001{12}012001?10?00???00100000??00001110100111011001000100000300110221?010101000{01}{01}10111101 Chloranthus 01320?02110001010401111200011001100101100001000001111111100??0?0????00100000??0111123020021000?1023000200?1???232??1?0120??2121130201111 Cyathea 01101002101020110330001104{01}011010001001100002010001100102010011{01}0{01}1{13}0111012130100011101{01}{01}0{01}101100020100001010012022110101010012020201101 Cycas 01221?02100000010300001200011001000101100001000001111012000?00?0????00100000??00111230200210000?023000200?1???231321?0100110021131201111 Danaea 0112100210111001034000111410110100010011010100000001{01}0120111001000??11100000??00000000100111011002200000000300110221?010011000111010110? Dicksonia 0110110210002001033000110400100100010011000020100011001{01}20100111111101111121301000111010001101100020000001010012022110101010012020201101 Equisetum1 010?0??00?0000?00110001122001001001100110010110100011011101??0000???00100000??0000112010001101101200000001030011022100101110000020101101 Equisetum2 010?0??00?0000?00110001122001001001100110010110100011011101??0000???00100000??0000112010001101101200000001030011022100101110000020101101 Ginkgo 01320??1100001010311001200011001110101100001000001112012000??0?0????00100000??01111230200210000?023000200?1???231321?0100110021131201111 Gleichenia 011010221010000101000011110011010001001100001001001100102010000000??0011011120100011101001010110002100000101001202211010101001202010110? Gnetum 01320?02110001010301111200011001110101100001000001112011200??0?0????00100000??001112?02002100001023000200?1???232??1?01101?1021130201111 Haplomitrium 00???????????????????00?0???0??0?0?00????????????0?0?????00????00???00102000??0000011000??1000000?000100010001000010010021000000100?0100 Huperzia 10???????????????????01001000??1?001000?001110???1011002000?10?00???00000000??0000?110100010000002000101{01}00000110010011000000011101?1100 Hymenophyllum 0110110210000001011000111100100100010011000020100011001??0100110????021101112010001110100111011010{12}0000001030012022110101010012020101101 Isoetes 10???????????????????01001010??0?001100?0000110001011002000?10?00???00000000??0010011010001010000?3000110?1???110110011001100010102?1100 Lygodium 011110021000000101100011110010010001001100{01}0201010110010200?00?01???00110111001000111010001101100120000001120012022110101110012020201101 Marattia 0110100210111000034000110410110000010011010100000001{01}0120111001000??11100000??00000000100111011002200000000300110221?0100110001110101101 Marchantia 00???????????????????00?0???0??0?0?00????????????0?0?????00????00???00102000??0000011000??1000000?200100010001000010010021000000100?0100 Marsilea 01111?0211000001010000111300100100010011000022100011001020100100011402111220???01011111110010110013000100?1???12022110101110012020201101 Ophioglossum 01010?02110000000301001202001000000100??1?01100000011012001?10?00???10100000??00001110100111011001000100000300110221?010101000001011110? Osmunda 01111002100000110100001102001001000100110000200100010012010?00?00???001101111200001110100111011011200000010300120221?0101010012020101101 Phanerosorus 011010{01}1100000?101000011131010010001001100001001001100102010000001220011012121100011101011010110022000000101001202211010101001202010110? Pinus 01020?000?0001010311111200011001110101100001000001112012000??0?0????00100000??011112302002100001023000200?1???232??1?01001?0021131201111 Plagiogyria 01121?021000201101000011040010010001001100002001001100102111021000??0011112130100011101110010110012000000101001202211010101001202020110? Polytrichum 00???????????????????00?0???0??0?0?00????????????0?0???2000????00???00102000??000001?010??1000000?100001110011000010011021000000000?0000 Psilotum 01010??00?0000?00????0102200100100000????????????001{01}012001010000???10100000??000010001001110110010001000101001102?1?0101110000010101101 Pteridium 011010021000201113000011131010010001001100002010001100102011021011010011122131100011101110010110012000000112001202211010111001202020111? Salvinia 01011?0211000000011000111100100000000????????????00100102010?110011302111220???01011111110010110013000100?1???1202211010011001202020110? Selaginella 10???????????????????01011000??1?001100?000111???0011002000?10?00???00000000??00100110{01}0001010000?3000110?1???110010011001100011102?1100 Sphagnum 00???????????????????00?0???0??0?0?00????????????0?0???2000????00???00102000??0000011010??1000000?200001010011000010011021000000100?0010 Tmesipteris 01000??00?0000?0011??0112200100000000????????????001{01}012001010000???10100000??000010001001110110010001000101001102?1?010111000001010110? ; END; BEGIN TREES; TITLE Tb10310; LINK TAXA = Taxa1; TRANSLATE 1 Blechnum, 2 Pteridium, 3 Marsilea, 4 Salvinia, 5 Cyathea, 6 Dicksonia, 7 Plagiogyria, 8 Lygodium, 9 Gleichenia, 10 Phanerosorus, 11 Hymenophyllum, 12 Osmunda, 13 Angiopteris, 14 Marattia, 15 Danaea, 16 Botrychium, 17 Ophioglossum, 18 Psilotum, 19 Tmesipteris, 20 Equisetum1, 21 Equisetum2, 22 Cycas, 23 Ginkgo, 24 Pinus, 25 Gnetum, 26 Chloranthus, 27 Austrobaileya, 28 Huperzia, 29 Isoetes, 30 Selaginella, 31 Sphagnum, 32 Polytrichum, 33 Marchantia, 34 Haplomitrium, 35 Anthoceros; TREE MP_Bootstrap_Cons = [&R] (((((((((((1,2),(3,4),(5,6),7,8),(9,10),11),12)Polypodiopsida,(16,17),((18,19),(20,21))),((13,14),15)Marattiopsida)Monilophytes,(22,(23,(24,(25,(26,27)))))seed_plants),(28,(29,30))Lycophytes),(31,32)),35),(33,34)); END; BEGIN TREES; TITLE Tb10309; LINK TAXA = Taxa1; TRANSLATE 1 Blechnum, 2 Pteridium, 3 Marsilea, 4 Salvinia, 5 Cyathea, 6 Dicksonia, 7 Plagiogyria, 8 Lygodium, 9 Gleichenia, 10 Phanerosorus, 11 Hymenophyllum, 12 Osmunda, 13 Angiopteris, 14 Marattia, 15 Danaea, 16 Botrychium, 17 Ophioglossum, 18 Psilotum, 19 Tmesipteris, 20 Equisetum1, 21 Equisetum2, 22 Cycas, 23 Ginkgo, 24 Pinus, 25 Gnetum, 26 Chloranthus, 27 Austrobaileya, 28 Huperzia, 29 Isoetes, 30 Selaginella, 31 Sphagnum, 32 Polytrichum, 33 Marchantia, 34 Haplomitrium, 35 Anthoceros; TREE MPT_3 = [&R] (1,(2,(((3,4),(((5,6),(((9,(12,((((13,(14,15)),((22,(23,(24,(25,(26,27))))),((28,(29,30)),((31,32),((33,34),35))))),(16,17)),((18,19),(20,21))))),10),11)),8)),7))); TREE MPT_4 = [&R] (1,(2,(((3,4),(((5,6),(((9,10),(12,((((13,14),15),((22,(23,(24,(25,(26,27))))),((28,(29,30)),((31,32),((33,34),35))))),((16,17),((18,19),(20,21)))))),11)),8)),7))); TREE MPT_5 = [&R] (1,(2,(((3,4),(((5,6),(((9,(12,(((((13,14),15),((22,(23,(24,(25,(26,27))))),((28,(29,30)),((31,32),((33,34),35))))),(16,17)),((18,19),(20,21))))),10),11)),8)),7))); TREE MPT_6 = [&R] (1,(2,(((3,4),(((5,6),(((9,(12,((((13,14),15),((22,(23,(24,(25,(26,27))))),((28,(29,30)),((31,32),((33,34),35))))),((16,17),((18,19),(20,21)))))),10),11)),8)),7))); TREE MPT_2 = [&R] (1,(2,(((3,4),(((5,6),(((9,10),(12,(((((13,14),15),((22,(23,(24,(25,(26,27))))),((28,(29,30)),((31,32),((33,34),35))))),(16,17)),((18,19),(20,21))))),11)),8)),7))); TREE MPT_7 = [&R] (1,(2,(((3,4),(8,(((9,10),11),(12,((((13,14),15),((22,(23,(24,(25,(26,27))))),((28,(29,30)),((31,32),((33,34),35))))),((16,17),((18,19),(20,21)))))))),((5,6),7)))); TREE MPT_1 = [&R] (1,(2,(((3,4),(((5,6),(((9,10),(12,((((13,(14,15)),((22,(23,(24,(25,(26,27))))),((28,(29,30)),((31,32),((33,34),35))))),(16,17)),((18,19),(20,21))))),11)),8)),7))); END;