S10012
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Ward P.,
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2010 |
Phylogeny and biogeography of dolichoderine ants: effects of data partitioning and relict taxa on historical inference. |
Systematic Biology
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S10036
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Townsend T.,
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Testing Species-Level Diversification Hypotheses in Madagascar: The Case of Microendemic Brookesia Leaf Chameleons |
Systematic Biology
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S1004
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Jordan S.,
Simon C.,
Polhemus D.
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Molecular systematics and adaptive radiation of Hawaii's endemic damselfly genus Megalagrion (Odonata: Coenagrionidae). |
Systematic Biology
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S10045
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Baker W.J.,
Savolainen V.,
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Complete Generic Level Phylogenetic Analyses of Palms (Arecaceae) with Comparisons of Supertree and Supermatrix Approaches |
Systematic Biology
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S10063
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San mauro D.,
Gower D.,
Massingham T.
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Experimental design in caecilian systematics: phylogenetic information of mitochondrial genomes and nuclear rag1 |
Systematic Biology
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S10081
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Fr?bisch N.,
Schoch R.
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Testing the Impact of Miniaturization on Phylogeny: Paleozoic Dissorophoid Amphibians |
Systematic Biology
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S10096
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Leclere L.,
Schuchert P.,
Cruaud C.
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Molecular Phylogenetics of Thecata (Hydrozoa, Cnidaria) Reveals Long-Term Maintenance of Life History Traits Despite High Frequency of Recent Character Changes |
Systematic Biology
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S10116
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Leach? A.
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2009 |
Species Tree Discordance Traces to Phylogeographic Clade Boundaries in North American Fence Lizards (Sceloporus) |
Systematic Biology
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S10124
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Steeman M.,
Hebsgaard M.,
Fordyce R.
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Radiation of Extant Cetaceans Driven by Restructuring of the Oceans |
Systematic Biology
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S10130
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Hansen D.,
Spicer G.,
Patterson R.
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Phylogenetic Relationships between and within Phacelia Sections Whitlavia and Gymnobythus (Boraginaceae) |
Systematic Biology
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S10131
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Pirie M.,
Humphreys A.,
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Reticulation, data combination and inferring evolutionary history: an example from Danthonioideae |
Systematic Biology
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S10145
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Salvo G.,
Ho S.,
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Tracing the Temporal and Spatial Origins of Island Endemics in the Mediterranean Region: A Case Study from the Citrus Family (Ruta L., Rutaceae) |
Systematic Biology
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S10155
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Duno de stefano R.,
Carnevali fern?ndez-concha G.,
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The Morphological and Phylogenetic Distinctions of Coursetia greenmanii (Leguminosae): Taxonomic and Ecological Implications. |
Systematic Biology
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S10160
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Thomson R.C.,
Shaffer H.
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Sparse Supermatrices for Phylogenetic Inference: Taxonomy, Alignment, Rogue Taxa, and the Phylogeny of Living Turtles |
Systematic Biology
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S10163
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Marshall D.
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2010 |
Cryptic Failure of Partitioned Bayesian Phylogenetic Analyses: Lost in the Land of Long Trees |
Systematic Biology
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S10165
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Brown R.,
Yang Z.
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Bayesian Dating of Shallow Phylogenies with a Relaxed Clock |
Systematic Biology
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S10167
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Klopfstein S.,
Kropf C.,
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An Evaluation of Phylogenetic Informativeness Profiles and the Molecular Phylogeny of Diplazontinae (Hymenoptera, Ichneumonidae) |
Systematic Biology
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S10171
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Stern A.,
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An Evolutionary Analysis of Lateral Gene Transfer in Thymidylate Synthase Enzymes. |
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S10178
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Ross K.,
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Species delimitation: A case study in a problematic ant taxon. |
Systematic Biology
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S10184
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Phillips M.,
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Tinamous and moa flock together: mitochondrial genome sequence analysis reveals independent losses of flight among ratites |
Systematic Biology
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S1019
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Susko E.,
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Estimation of Rates-Across-Sites Distributions in Phylogenetic Substitution Models. |
Systematic Biology
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S10200
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Waters J.,
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Gene trees versus species trees: reassessing life-history evolution in a freshwater fish radiation. |
Systematic Biology
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S1021
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Yang Z.,
Yoder A.D.
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Comparison of Likelihood and Bayesian Methods for Estimating Divergence Times Using Multiple Gene Loci and Calibration Points, with Application to a Radiation of Cute-Looking Mouse Lemur Species. |
Systematic Biology
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S10249
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Holland B.,
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Identifying cliques of convergent characters: concerted evolution in the cormorants and shags. |
Systematic Biology
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S10254
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Smith S.,
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Combining historical biogeography with niche modeling in the Caprifolium clade of Lonicera (Caprifoliaceae, Dipsacales). |
Systematic Biology
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S10268
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Carstens B.,
Dewey T.
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Species delimitation using a combined coalescent and information theoretic approach: An example from North American Myotis bats. |
Systematic Biology
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S10274
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Magall?n S.
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2010 |
Using fossils to break long branches in molecular dating: a comparison of relaxed clocks applied to the origin of angiosperms. |
Systematic Biology
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S10282
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Stern S.,
Bohs L.,
Weese T.
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A three-gene evolutionary study of Solanum section Androceras. |
Systematic Biology
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S10315
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Cerchio S.,
Tucker P.
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Influence of Alignment on the mtDNA Phylogeny of Cetacea: Questionable Support for a Mysticeti/Physeteroidea Clade |
Systematic Biology
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S10493
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Biffin E.,
Hill R.,
Andrew L.J.
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2010 |
Did Kauri (Agathis: Araucariaceae) Really Survive the Oligocene Drowning of New Zealand? |
Systematic Biology
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S10562
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Parfrey L.W.,
Grant J.R.,
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2010 |
Broadly Sampled Multigene Analyses Yield a Well-resolved Eukaryotic Tree of Life |
Systematic Biology
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S10570
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Reeves P.A.,
Richards C.M.
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2011 |
Species Delimitation under the General Lineage Concept: An Empirical Example Using Wild North American Hops (Cannabaceae: Humulus lupulus) |
Systematic Biology
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S10580
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Buerki S.,
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Comparative Performance of Supertree Algorithms in Large Datasets using the Soapberry Family (Sapindaceae) as a case study |
Systematic Biology
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S10613
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Nagy L.,
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Understanding the Evolutionary Processes of Fungal Fruiting Bodies: Correlated Evolution and Divergence Times in the Psathyrellaceae |
Systematic Biology
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S10620
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Skinner A.
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2010 |
Rate Heterogeneity, Ancestral Character State Reconstruction, and the Evolution of Limb Morphology in Lerista (Scincidae, Squamata) |
Systematic Biology
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S10632
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Egan A.N.,
Doyle J.
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2010 |
A Comparison of Global, Gene-Specific, and Relaxed Clock Methods in a Comparative Genomics Framework: Dating the Polyploid History of Soybean (Glycine max) |
Systematic Biology
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S1065
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Waters J.,
Roy M.
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2004 |
Out of Africa: the slow train to Australasia. |
Systematic Biology
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S1070
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Nylander J.,
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Bayesian Phylogenetic Analysis of Combined Data. |
Systematic Biology
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S1073
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Percy D.,
Cronk Q.,
Page R.
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Plant-insect interactions: double-dating associated insect and plant lineages reveals asynchronous radiations. |
Systematic Biology
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S10754
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Fink S.,
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Genomic Scans Support Repetitive Continental Colonization Events during the Rapid Radiation of Voles (Rodentia: Microtus): the Utility of AFLPs versus Mitochondrial and Nuclear Sequence Markers |
Systematic Biology
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S10869
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Rowe K.C.
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2011 |
Recent and Rapid Speciation with limited Morphological Disparity in the Genus Rattus |
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S10901
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Yu L.,
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Phylogenetic Utility of Nuclear Introns in Interfamilial Relationships of Caniformia (Order Carnivora). |
Systematic Biology
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S10908
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Wiens J.J.,
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Combining phylogenomics and fossils in higher level squamate reptile phylogeny: molecular data change the placement of fossil taxa. |
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Are Transposable Element Insertions Homoplasy Free? An Examination Using the Avian Tree of Life |
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S11103
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A Phylogenetic Analysis of Pygmy Perches (Teleostei: Percichthyidae) with an Assessment of the Major Historical Influences on Aquatic Biogeography in Southern Australia |
Systematic Biology
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S11114
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Pyron R.A.
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2011 |
Divergence-Time Estimation Using Fossils as Terminal Taxa and the Origins of Lissamphibia |
Systematic Biology
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S11132
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Schnitzler J.,
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Causes of Plant Diversification in the Cape Biodiversity Hotspot of South Africa |
Systematic Biology
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S1115
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Lin C.,
Danforth B.,
Wood T.
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Molecular phylogenetics and evolution of maternal care in membracine treehoppers. |
Systematic Biology
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S11161
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Antonelli A.,
Sanmart?n I.
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Mass Extinction, Gradual Cooling, or Rapid Radiation? Reconstructing the Spatiotemporal Evolution of the ancient angiosperm genus Hedyosmum (Chloranthaceae) using Empirical and simulated Approaches |
Systematic Biology
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S11167
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Goldberg E.E.,
Lancaster L.T.,
Ree R.H.
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Phylogenetic inference of reciprocal effects between geographic range evolution and diversification |
Systematic Biology
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S11174
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Kubatko L.,
Gibbs H.L.,
Bloomquist E.W.
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2011 |
Inferring Species-Level Phylogenies and Taxonomic Distinctiveness Using Multi-Locus Data In Sistrurus Rattlesnakes |
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S11235
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How the Worm Got its Pharynx: Phylogeny, Classification and Bayesian assessment of Character Evolution in Acoela |
Systematic Biology
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S11258
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Syme A.E.,
Oakley T.H.
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2011 |
Dispersal between shallow and abyssal seas and evolutionary loss and re-gain of compound eyes in cylindroleberidid ostracods: conflicting conclusions from different comparative methods |
Systematic Biology
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S11289
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Harrington R.C.,
Near T.J.
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2011 |
Phylogenetic and coalescent methods of species delimitation in snubnose darters (Percidae: Etheostoma) |
Systematic Biology
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S11291
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Lukoschek V.,
Avise J.C.,
Keogh J.S.
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Evaluating fossil calibrations for dating phylogenies in light of rates of molecular evolution: a comparison of three approaches. |
Systematic Biology
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S11299
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Cho S.,
Zwick A.,
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Can Deliberately Incomplete Gene Sample Augmentation Improve a Phylogeny Estimate for the Advanced Moths and Butterflies (Hexapoda: Lepidoptera)? |
Systematic Biology
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S1134
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Razafimandimbison S.,
Kellogg E.,
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Recent Origin and Phylogenetic Utility of Divergent ITS Putative Pseudogenes: A Case Study from Naucleeae (Rubiaceae) |
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S11362
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Badets M.,
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Correlating Early Evolution of Parasitic Platyhelminths to Gondwana Break-up |
Systematic Biology
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S1137
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Steppan S.,
Adkins R.,
Anderson J.
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Phylogeny and divergence-date estimates of rapid radiations in muroid rodents based on multiple nuclear genes. |
Systematic Biology
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S11410
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Tsang L.,
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Hermit to king, or hermit to all: Multiple transitions to crab-like forms from hermit crab ancestors |
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S11415
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Zhou X.,
Xu S.,
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Phylogenomic analysis resolves the interordinal relationships and rapid diversification of the Laurasiatherian mammals |
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S11475
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A Total-evidence approach to dating with fossils, applied to the early radiation of the Hymenoptera |
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Near T.J.,
Bossu C.,
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Phylogeny and temporal diversification of darters (Percidae: Etheostomatinae) |
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S11625
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San mauro D.,
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Experimental design in phylogenetics: testing predictions from expected information |
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S11662
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Boursot P.,
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Recurrent Introgression of Mitochondrial DNA Among Hares (Lepus spp.) revealed by Species-tree Inference and Coalescent Simulations |
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S11672
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Miyamoto M.M.,
Porter C.A.,
Goodman M.
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c-Myc Gene Sequences and the Phylogeny of Bats and Other Eutherian Mammals. |
Systematic Biology
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S11849
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Lee J.Y.,
Joseph L.,
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A Species Tree for the Australo-Papuan Fairy-wrens and Allies (Aves: Maluridae) |
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S11925
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Camargo A.,
Avila L.J.,
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Accuracy and precision of species trees: effects of locus, individual, and base pair sampling on inference of species trees in lizards of the Liolaemus darwinii group (Squamata, Liolaemidae) |
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S11986
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Moyle R.G.,
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Phylogeny and Biogeography of the Core Babblers (Aves: Timaliidae) |
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S12013
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Aligned 18S and Insect Phylogeny. |
Systematic Biology
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S12086
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Hendricks J.R.
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Geometric Morphometric Character Suites as Phylogenetic Data: Extracting Phylogenetic Signal from Gastropod Shells |
Systematic Biology
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S12087
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Klimov P.B.,
Oconnor B.
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Is Permanent Parasitism Reversible??Critical Evidence from Early Evolution of House Dust Mites. |
Systematic Biology
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S12156
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Faircloth B.C.,
Mccormack J.E.,
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Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales. |
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S12162
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Noonan B.P.,
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Multiple Quaternary Refugia in the Eastern Guiana Shield Revealed by Comparative Phylogeography of 12 Frog Species |
Systematic Biology
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S12169
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Mariadassou M.,
Bar-hen A.,
Kishino H.
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Taxon Influence Index: Assessing Taxon-Induced Incongruities in Phylogenetic Inference |
Systematic Biology
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S12213
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Tavares E.S.,
Baker A.,
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Phylogenetic Relationships and Historical Biogeography of Neotropical Parrots (Psittaciformes: Psittacidae: Arini) Inferred from Mitochondrial and Nuclear DNA Sequences. |
Systematic Biology
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S12261
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Cusimano N.,
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A new method for handling missing species in diversification analysis applicable to randomly or non-randomly sampled phylogenies |
Systematic Biology
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S12267
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Heibl C.,
Renner S.S.
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Distribution models and a dated phylogeny for Chilean Oxalis species reveal occupation of new habitats by different lineages, not rapid adaptive radiation |
Systematic Biology
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S12303
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Schenk J.J.,
Rowe K.C.,
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Ecological Opportunity and Incumbency in the Diversification of Repeated Continental Colonizations by Muroid Rodents |
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S12439
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Novel distances for Dollo data |
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S1251
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Complex Biogeographic Patterns in Androsace (Primulaceae) and Related Genera: Evidence from Phylogenetic Analyses of Nuclear Internal Transcribed Spacer and Plastid trnL-F Sequences. |
Systematic Biology
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S1252
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Molecular phylogentics of Squamata: The position of snakes, amphisbaenians, and dibamids, and the root of the squamate tree |
Systematic Biology
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S12669
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Anchored hybrid enrichment for massively high-throughput phylogenomics |
Systematic Biology
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Testing the impact of calibration on molecular divergence times using a fossil-rich group: the case of Nothofagus (Fagales) |
Systematic Biology
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S1287
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Identifying and Removing Fast Evolving Sites Using Compatibility Analysis: An Example from the Arthropoda |
Systematic Biology
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S12889
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The evolution of pharyngognathy: a phylogenetic and functional appraisal of the pharyngeal jaw key innovation in labroid fishes and beyond |
Systematic Biology
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S12891
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Braun E.,
Kimball R.
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Ratite Non-Monophyly: Independent Evidence From 40 Novel Loci |
Systematic Biology
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S1317
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Resolving Deep Phylogenetic Relationships in Salamanders: Analyses of Mitochondrial and Nuclear Genomic Data. |
Systematic Biology
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Mosaics of Convergences, Noise and Misleading Morphological Phylogenies: what's in a Viverrid-like Carnivoran? |
Systematic Biology
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An Extreme Case of Plant-Insect Co-Diversification: Figs and Fig-Pollinating Wasps |
Systematic Biology
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S1332
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Untangling long branches: Identifying conflicting phylogenetic signals using spectral analysis, Neighbor-Net, and consensus networks. |
Systematic Biology
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How Much Data are Needed to Resolve a Difficult Phylogeny? Case Study in Lamiales. |
Systematic Biology
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What?s in a Name? Disentangling the Dicranum scoparium Species Complex (Dicranaceae, Bryophyta) |
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Asynchronous colonization of Madagascar by the four endemic clades of primates, tenrecs, carnivores and rodents as inferred from nuclear genes. |
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Next-Generation Museomics Disentangles One of the Largest Primate Radiations. |
Systematic Biology
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Bayesian Tests of Topology Hypotheses with an example from Diving Beetles |
Systematic Biology
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An Integrative Approach to Delimiting Species Using Multiple DNA Barcoding Methods: A Case Study of the North American Tarantula Genus Aphonopelma (Araneae, Mygalomorphae, Theraphosidae) |
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Integrating Incomplete Fossils by Isolating Conflicting Signal in Saturated and Non-Independent Morphological Characters |
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Multilocus species delimitation in a complex of morphologically conserved trapdoor spiders (Mygalomorphae, Antrodiaetidae, Aliatypus) |
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Optimal Intron Analyses in the Trimeresurus Radiation of Asian Pitvipers. |
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Phylogeny and Biogeography of a Cosmopolitan Frog Radiation: Late Cretaceous Diversification Resulted in Continent-Scale Endemism in the Family Ranidae. |
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Accelerated Rate of Molecular Evolution for Vittarioid Ferns is Strong and Not Due to Selection |
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S1422
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Phylogeny of Eunicida (Annelida) and Exploring Data Congruence using a Partition Addition Bootstrap Alteration (PABA) Approach. |
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When Outgroups Fail; Phylogenomics of Rooting the Emerging Pathogen, Coxiella burnetii |
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S14273
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Addressing Gene Tree Discordance and Non-Stationarity to resolve a Multi-Locus Phylogeny of the Flatfishes (Teleostei: Pleuronectiformes) |
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Coalescent Species Delimitation in Milksnakes (genus Lampropeltis) and Impacts on Phylogenetic Comparative Analyses |
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Medusozoan phylogeny and character evolution clarified by new large and small subunit rDNA data and an assessment of the utility of phylogenetic mixture models. |
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The pattern and timing of diversification of Philippine endemic rodents: evidence from mitochondrial and nuclear gene sequences. |
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Comparing Host and Parasite Phylogenies: Gyrodactylus Flatworms Jumping from Goby to Goby. |
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