#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 18, 2024; 15:49 GMT

TreeBASE (cc) 1994-2008

Study reference:
Fan P., Liu Y., Zhang Z., Zhao C., Li C., Liu W., & Li M. 2016. Phylogenetic position
of the white-cheeked macaque (Macaca leucogenys), a newly described primate
from Southeastern Tibet. Molecular Phylogentics and Evolution, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S19712]

BEGIN TAXA;
        TITLE  Untitled_Block_of_Taxa;
        DIMENSIONS NTAX=50;
        TAXLABELS
            Macaca_arctoides_1
            Macaca_arctoides_2
            Macaca_arctoides_3
            Macaca_arctoides_Vietnam1
            Macaca_assamenses_Myanmar1
            Macaca_assamenses_Myanmar2
            Macaca_assamenses_Myanmar3
            Macaca_assamenses_Myanmar4
            Macaca_assamenses_South_Chi
            Macaca_assamenses_Vietnam3
            Macaca_assamenses_Yunnan1
            Macaca_assamenses_Yunnan2
            Macaca_assamenses_Yunnan3
            Macaca_assamenses_Yunnan4
            Macaca_fascicularis_China1
            Macaca_fascicularis_China2
            Macaca_fascicularis_China3
            Macaca_fascicularis_Vietnam2
            Macaca_fuscata_Japan1
            Macaca_fuscata_Japan2
            Macaca_leucogenys_CQKL
            Macaca_leucogenys_CQKS
            Macaca_leucogenys_XKL
            Macaca_leucogenys_XKS
            Macaca_mulatta_Germany1
            Macaca_mulatta_Germany2
            Macaca_mulatta_USA1
            Macaca_mulatta_USA2
            Macaca_munzala_Tawang1
            Macaca_munzala_Tawang2
            Macaca_munzala_Tawang3
            Macaca_nemestrina_1
            Macaca_nemestrina_2
            Macaca_nigra_Sulawesi1
            Macaca_nigra_Sulawesi2
            Macaca_radiata_Karnata1
            Macaca_radiata_Karnata2
            Macaca_silenus_1
            Macaca_silenus_2
            Macaca_sylvanus_1
            Macaca_sylvanus_2
            Macaca_thibetana_Sichuan1
            Macaca_thibetana_Sichuan2
            Macaca_thibetana_Sichuan3
            Macaca_thibetana_Sichuan4
            Macaca_thibetana_Sichuan5
            Macaca_tonkeana_Sulawesi3
            Macaca_tonkeana_Sulawesi4
            Papio_hamadryas_P.hamad1
            Papio_hamadryas_P.hamad2
            ;
END;

BEGIN TREES;
      TITLE Macaque_cytb_Dloop_bayes;
      LINK TAXA = Untitled_Block_of_Taxa;
      TREE con_50_majrule = [&R] ((Papio_hamadryas_P.hamad1:0.003812641,Papio_hamadryas_P.hamad2:0.003683502):0.831262,((Macaca_sylvanus_1:0.003679685,Macaca_sylvanus_2:0.003604322):0.520015,(((Macaca_silenus_1:0.003738048,Macaca_silenus_2:0.003846041):0.6346964,((Macaca_nigra_Sulawesi1:0.00353366,Macaca_nigra_Sulawesi2:0.003407604):0.2019036,(Macaca_tonkeana_Sulawesi3:0.00349676,Macaca_tonkeana_Sulawesi4:0.003523638):0.4420869):0.116641):0.1480164,(((Macaca_fascicularis_China1:0.2283344,(Macaca_fascicularis_China2:0.003513958,Macaca_fascicularis_China3:0.003611355):0.1087562):0.3068143,((Macaca_arctoides_3:0.05007023,(Macaca_arctoides_1:0.02443738,Macaca_arctoides_2:0.004091798):0.07922466):0.5727064,(Macaca_mulatta_Germany2:0.1928587,(Macaca_fuscata_Japan1:0.003800244,Macaca_fuscata_Japan2:0.003724604):0.1989292,((Macaca_nemestrina_1:0.003817456,Macaca_nemestrina_2:0.003741354):0.1381309,(Macaca_mulatta_Germany1:0.01810792,Macaca_mulatta_USA1:0.003693446,Macaca_mulatta_USA2:0.003638305):0.1353531):0.1011339):0.07997838):0.05319521):0.08307791,(((Macaca_munzala_Tawang3:0.01519518,(Macaca_munzala_Tawang1:0.007778348,Macaca_munzala_Tawang2:0.02484158):0.02260623):0.2912246,((Macaca_radiata_Karnata1:0.0190078,Macaca_radiata_Karnata2:0.01840534):0.3117933,(Macaca_leucogenys_CQKS:0.004679314,(Macaca_leucogenys_CQKL:0.01366037,Macaca_leucogenys_XKL:0.003677313,Macaca_leucogenys_XKS:0.003385027):0.008224273):0.2036517):0.04526637):0.2343154,((Macaca_assamenses_Yunnan2:0.1084684,(Macaca_assamenses_Yunnan4:0.005157858,(Macaca_assamenses_Myanmar2:0.02481032,Macaca_assamenses_Myanmar4:0.003821958):0.008162069):0.1116158):0.0724514,((Macaca_fascicularis_Vietnam2:0.1122187,(Macaca_thibetana_Sichuan1:0.009062691,Macaca_thibetana_Sichuan5:0.01400181,(Macaca_thibetana_Sichuan2:0.003562469,Macaca_thibetana_Sichuan3:0.003731835,Macaca_thibetana_Sichuan4:0.003771583):0.01818306):0.1695868):0.07546585,(Macaca_assamenses_Vietnam3:0.1245906,(Macaca_assamenses_South_Chi:0.009194456,Macaca_arctoides_Vietnam1:0.01863907):0.04736927,(Macaca_assamenses_Yunnan3:0.07464752,(Macaca_assamenses_Yunnan1:0.03623266,(Macaca_assamenses_Myanmar1:0.003652009,Macaca_assamenses_Myanmar3:0.003532475):0.03647978):0.06917561):0.04027377):0.05572553):0.07216243):0.1764029):0.1822112):0.09402221):0.1136157):0.831262);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr100261]


END;