#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 24, 2024; 23:43 GMT

TreeBASE (cc) 1994-2008

Study reference:
Fan P., Liu Y., Zhang Z., Zhao C., Li C., Liu W., & Li M. 2016. Phylogenetic position
of the white-cheeked macaque (Macaca leucogenys), a newly described primate
from Southeastern Tibet. Molecular Phylogentics and Evolution, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S19712]

BEGIN TAXA;
        TITLE  Untitled_Block_of_Taxa;
        DIMENSIONS NTAX=49;
        TAXLABELS
            Macaca_arctoides_Malaysia1
            Macaca_arctoides_Thaila1
            Macaca_arctoides_Unknown
            Macaca_arctoides_Vietnam1
            Macaca_assamenses_S.China1
            Macaca_assamenses_S.China2
            Macaca_cyclopis_M.cyclop1
            Macaca_cyclopis_M.cyclop2
            Macaca_fascicularis_Songkhla1
            Macaca_fascicularis_TumChompo
            Macaca_fascicularis_Vietnam2
            Macaca_fuscata_Japan3
            Macaca_fuscata_Japan4
            Macaca_fuscata_Japan5
            Macaca_hecki_Sulawe7
            Macaca_leucogenys_CQKL
            Macaca_leucogenys_XKL
            Macaca_leucogenys_XKS
            Macaca_maura_Sulawe10
            Macaca_mulatta_Burma1
            Macaca_mulatta_N.India1
            Macaca_mulatta_N.India2
            Macaca_mulatta_S.E.China
            Macaca_munzala_Tawang1
            Macaca_munzala_Tawang2
            Macaca_munzala_Tawang3
            Macaca_nemestrina_Kaliman1
            Macaca_nemestrina_Kaliman2
            Macaca_nemestrina_Kaliman3
            Macaca_nigra_Sulawe5
            Macaca_nigrescens_Sulawe6
            Macaca_ochreata_Sulawe11
            Macaca_radiata_India1
            Macaca_radiata_India2
            Macaca_radiata_Karnata1
            Macaca_radiata_Karnata3
            Macaca_silenus_M.silen1
            Macaca_silenus_M.silen2
            'Macaca sinica Sri_Lan1'
            'Macaca sinica Sri_Lan2'
            'Macaca sinica Sri_Lan3'
            Macaca_sylvanus_M.sylvan3
            Macaca_sylvanus_M.sylvan4
            Macaca_sylvanus_M.sylvan5
            Macaca_thibetana_SEChina1
            Macaca_thibetana_SEChina2
            Macaca_tonkeana_Sulawe8
            Macaca_tonkeana_Sulawe9
            Papio_hamadryas_P.hamadr3
            ;
END;

BEGIN TREES;
      TITLE Macaque_TSPY_bayes;
      LINK TAXA = Untitled_Block_of_Taxa;
      TREE con_50_majrule = [&R] (Papio_hamadryas_P.hamadr3:0.47879335,((Macaca_sylvanus_M.sylvan5:0.02552367,(Macaca_sylvanus_M.sylvan3:0.06604333,Macaca_sylvanus_M.sylvan4:0.02712362):0.1380826):0.4083894,(Macaca_fascicularis_Songkhla1:0.1008163,((Macaca_fuscata_Japan4:0.03073429,(Macaca_fuscata_Japan3:0.06462004,Macaca_fuscata_Japan5:0.02792243):0.05976473):0.06567686,((Macaca_cyclopis_M.cyclop1:0.02683794,Macaca_cyclopis_M.cyclop2:0.0254031):0.0747004,(Macaca_mulatta_S.E.China:0.02675042,Macaca_mulatta_Burma1:0.02700396,Macaca_fascicularis_TumChompo:0.02631251,Macaca_fascicularis_Vietnam2:0.0262943,(Macaca_mulatta_N.India2:0.02595553,Macaca_mulatta_N.India1:0.02755548):0.06275091):0.06161328):0.07133114):0.1921964):0.2563146,((Macaca_nemestrina_Kaliman1:0.02631052,Macaca_nemestrina_Kaliman2:0.02522521,Macaca_nemestrina_Kaliman3:0.02577978,(Macaca_silenus_M.silen1:0.02619551,Macaca_silenus_M.silen2:0.02726569):0.101625):0.2194685,(Macaca_maura_Sulawe10:0.1020997,Macaca_hecki_Sulawe7:0.1371038,Macaca_nigrescens_Sulawe6:0.06460797,Macaca_nigra_Sulawe5:0.1752777,Macaca_ochreata_Sulawe11:0.09759647,(Macaca_tonkeana_Sulawe8:0.02595142,Macaca_tonkeana_Sulawe9:0.02654281):0.1411453):0.1395317):0.2572199,(Macaca_radiata_India1:0.0263681,Macaca_radiata_India2:0.02693828,Macaca_assamenses_S.China1:0.0277308,Macaca_assamenses_S.China2:0.06376751,Macaca_munzala_Tawang1:0.05983978,Macaca_munzala_Tawang2:0.03863494,Macaca_munzala_Tawang3:0.03521728,(Macaca_radiata_Karnata1:0.03549819,Macaca_radiata_Karnata3:0.3733635):0.5029643,(Macaca_thibetana_SEChina1:0.06264819,Macaca_thibetana_SEChina2:0.02719456):0.1021445,('Macaca sinica Sri_Lan1':0.02734818,'Macaca sinica Sri_Lan2':0.0257852,'Macaca sinica Sri_Lan3':0.0262471):0.09994698,(Macaca_leucogenys_CQKL:0.03513889,Macaca_leucogenys_XKL:0.03497747,Macaca_leucogenys_XKS:0.0333811):0.08305121,(Macaca_arctoides_Malaysia1:0.02744139,Macaca_arctoides_Thaila1:0.02763328,Macaca_arctoides_Unknown:0.02637908,Macaca_arctoides_Vietnam1:0.02763768):0.06443373):0.2599303):0.47879335);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr100263]


END;