#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 05, 2024; 13:38 GMT

TreeBASE (cc) 1994-2008

Study reference:
Jung T., Horta jung M., Cacciola S.O., Cech T., Bakonyi J., Seress D., Mosca S.,
Schena L., Seddaiu S., Pane A., Gaetano M., Maia C., Cravador A., Franceschini A.,
& Scanu B. 2017. Multiple new cryptic pathogenic Phytophthora species from Fagaceae
forests in Austria, Italy and Portugal. IMA Fungus, 8(2): 219-244.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S20982]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=43;
        TAXLABELS
            Phytophthora_attenuata
            Phytophthora_attenuata_CBS_141200
            Phytophthora_cinnamomi_CBS_144.22
            Phytophthora_europaea_CBS_109049
            Phytophthora_europaea_CBS_109051
            Phytophthora_flexuosa_CBS_141201
            Phytophthora_flexuosa_CBS_141202
            Phytophthora_formosa_CBS_141203
            Phytophthora_formosa_CBS_141204
            Phytophthora_fragariae_BBA1194
            Phytophthora_fragariae_BBAL1
            Phytophthora_intricata_CBS_141210
            Phytophthora_intricata_CBS_141211
            Phytophthora_niederhauserii_CBS_124086
            Phytophthora_rubi_CBS_967.95
            Phytophthora_rubi_CH106
            'Phytophthora sp. xcambivora-like CBS 111329'
            'Phytophthora sp. xmultiformis-like 4971496'
            Phytophthora_tyrrhenica_CBS_142301
            Phytophthora_tyrrhenica_CBS_142303
            Phytophthora_tyrrhenica_PH155
            Phytophthora_tyrrhenica_TYR1
            Phytophthora_tyrrhenica_TYR3
            Phytophthora_tyrrhenica_TYR4
            Phytophthora_tyrrhenica_TYR5
            Phytophthora_uliginosa_CBS_109054
            Phytophthora_uniformis_ALN58
            Phytophthora_uniformis_P876
            Phytophthora_vulcanica_CBS_141216
            Phytophthora_vulcanica_CBS_141217
            Phytophthora_vulcanica_X3c
            Phytophthora_vulcanica_X3d
            Phytophthora_vulcanica_X3e
            Phytophthora_xalni_IMI_392314
            Phytophthora_xalni_Reis2
            Phytophthora_xcambivora_4044.1
            Phytophthora_xcambivora_CBS_141218
            Phytophthora_xheterohybrida_CBS_141207
            Phytophthora_xheterohybrida_TW32
            Phytophthora_xincrassata_CBS_141208
            Phytophthora_xincrassata_CBS_141209
            Phytophthora_xmultiformis_IMI_392316
            Phytophthora_xmultiformis_PAM396
            ;
END;

BEGIN TREES;
      TITLE 'Phytophthora Clade7a five-locus ML';
      LINK TAXA = Taxa;
      TREE 'Clade7a five-locus ML tree' = [&R] (((((Phytophthora_flexuosa_CBS_141201:1.0E-6,Phytophthora_flexuosa_CBS_141202:1.0E-6)100:0.004203,(Phytophthora_europaea_CBS_109051:1.0E-6,Phytophthora_europaea_CBS_109049:1.0E-6)100:0.005349)95:0.004257,(((Phytophthora_tyrrhenica_CBS_142303:9.59E-4,(((Phytophthora_tyrrhenica_TYR5:1.0E-6,Phytophthora_tyrrhenica_TYR1:1.0E-6)70:1.0E-6,(Phytophthora_tyrrhenica_TYR4:1.0E-6,Phytophthora_tyrrhenica_TYR3:1.0E-6)96:1.0E-6)84:1.0E-6,(Phytophthora_tyrrhenica_CBS_142301:1.0E-6,Phytophthora_tyrrhenica_PH155:1.0E-6)95:2.8E-4)97:7.33E-4)100:0.005677,Phytophthora_uliginosa_CBS_109054:0.004945)100:0.004709,((Phytophthora_intricata_CBS_141210:1.0E-6,Phytophthora_intricata_CBS_141211:1.0E-6)100:0.006536,(((((Phytophthora_xheterohybrida_TW32:1.0E-6,Phytophthora_xheterohybrida_CBS_141207:1.0E-6)100:0.002345,(Phytophthora_xincrassata_CBS_141209:1.0E-6,Phytophthora_xincrassata_CBS_141208:1.0E-6)100:0.002324)84:0.001348,(((('Phytophthora sp. xcambivora-like CBS 111329':9.04E-4,(Phytophthora_xcambivora_CBS_141218:1.0E-6,Phytophthora_xcambivora_4044.1:1.0E-6)98:0.00202)33:0.001386,(Phytophthora_uniformis_P876:1.0E-6,Phytophthora_uniformis_ALN58:1.0E-6)99:0.002018)29:0.001657,'Phytophthora sp. xmultiformis-like 4971496':1.0E-6)25:0.001317,(Phytophthora_xalni_Reis2:1.0E-6,((Phytophthora_xmultiformis_IMI_392316:1.0E-6,Phytophthora_xmultiformis_PAM396:1.0E-6)98:1.0E-6,Phytophthora_xalni_IMI_392314:1.0E-6)83:1.0E-6)100:0.003292)71:0.00207)53:0.001053,(((Phytophthora_rubi_CH106:1.0E-6,Phytophthora_rubi_CBS_967.95:1.0E-6)100:0.003958,(Phytophthora_fragariae_BBAL1:2.8E-4,Phytophthora_fragariae_BBA1194:1.0E-6)100:0.007123)96:0.002418,(Phytophthora_attenuata_CBS_141200:2.83E-4,Phytophthora_attenuata:8.46E-4)100:0.008569)25:3.31E-4)78:0.001661,(Phytophthora_formosa_CBS_141204:1.0E-6,Phytophthora_formosa_CBS_141203:1.0E-6)100:0.009483)52:7.43E-4)100:0.006917)49:0.001082)92:0.004581,(Phytophthora_vulcanica_X3e:1.0E-6,(Phytophthora_vulcanica_CBS_141216:1.0E-6,(Phytophthora_vulcanica_CBS_141217:1.0E-6,(Phytophthora_vulcanica_X3c:1.0E-6,Phytophthora_vulcanica_X3d:1.0E-6)21:1.0E-6)16:1.0E-6)94:1.0E-6)100:0.022492)99:0.004533,(Phytophthora_cinnamomi_CBS_144.22:0.036052,Phytophthora_niederhauserii_CBS_124086:0.033481)99:0.004533);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr104040]


END;