#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 17, 2024; 3:04 GMT TreeBASE (cc) 1994-2008 Study reference: Jung T., Horta jung M., Cacciola S.O., Cech T., Bakonyi J., Seress D., Mosca S., Schena L., Seddaiu S., Pane A., Gaetano M., Maia C., Cravador A., Franceschini A., & Scanu B. 2017. Multiple new cryptic pathogenic Phytophthora species from Fagaceae forests in Austria, Italy and Portugal. IMA Fungus, 8(2): 219-244. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S20982] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=117; TAXLABELS Nothophytophthora_amphigynosa_CBS_142348 Phytophthora_arenaria_VHS_10154 Phytophthora_arenaria_VHS_19931 Phytophthora_asparagi_VHS_17644 Phytophthora_attenuata Phytophthora_boehmeriae_CBS_291.29 Phytophthora_boodjera_VHS_26806 Phytophthora_cactorum_414 Phytophthora_cactorum_IMI_21168 Phytophthora_cactorum_P167 Phytophthora_cactorum_WPC_P11184 Phytophthora_cactorum_WPC_P11184_P6183 Phytophthora_cactorum_WPC_P6183 Phytophthora_capsici_CBS_121656 Phytophthora_capsici_CBS_121656_RLW2002_MS8 Phytophthora_capsici_IMI_352321 Phytophthora_capsici_PD989562 Phytophthora_capsici_RLW2002_MS8 Phytophthora_capsici_WPC_P1319 Phytophthora_castaneae_CBS_587.85 Phytophthora_castaneae_IMI_98426 Phytophthora_castaneae_WPC_P10187 Phytophthora_castanetorum_BD293 Phytophthora_castanetorum_BD336 Phytophthora_castanetorum_BD476 Phytophthora_castanetorum_BD484 Phytophthora_castanetorum_BD485 Phytophthora_castanetorum_BD486 Phytophthora_castanetorum_CBS_142299 Phytophthora_castanetorum_CBS_142300 Phytophthora_castanetorum_P17 Phytophthora_castanetorum_P18 Phytophthora_cinnamomi_CBS_144.22 Phytophthora_heveae_CBS_296.29 Phytophthora_heveae_WPC_P10167 Phytophthora_humicola_CBS_200.81 Phytophthora_ilicis_CBS_114348 Phytophthora_ilicis_CBS_255.93 Phytophthora_ilicis_CBS_255.93_CBS_114348 Phytophthora_ilicis_WPC_P6860 Phytophthora_infestans_Dr98004 Phytophthora_infestans_Pic99186 Phytophthora_infestans_WPC_P10650 Phytophthora_infestans_WPC_P10651 Phytophthora_infestans_WPC_P10651_Pic99186 Phytophthora_insolita_CBS_691.79 Phytophthora_lateralis_CBS_168.42 Phytophthora_lateralis_CBS_168.42_WPC_P1728 Phytophthora_lateralis_WPC_P1728 Phytophthora_lilii_CBS_135746 Phytophthora_meadii_CBS_219.88 Phytophthora_meadii_CBS_219.88_WPC_P6262 Phytophthora_meadii_WPC_P6128 Phytophthora_meadii_WPC_P6262 Phytophthora_megakarya_203532 Phytophthora_megakarya_IMI_337098 Phytophthora_megakarya_WPC_P8516 Phytophthora_megakarya_WPC_P8518 Phytophthora_megakarya_WPC_P8518_IMI_337098 Phytophthora_multivesiculata_CBS_101594 Phytophthora_multivesiculata_CBS_545.96 Phytophthora_multivora_CBS_124094 Phytophthora_multivora_RHS226.2001 Phytophthora_nemorosa_CBS_114870 Phytophthora_nemorosa_CBS_114870_WPC_P10612 Phytophthora_nemorosa_WPC_P10288 Phytophthora_nemorosa_WPC_P10612 Phytophthora_nicotianae_22F9 Phytophthora_nicotianae_P582 Phytophthora_nicotianae_STEU_6273 Phytophthora_nicotianae_WPC_P10802 Phytophthora_nicotianae_WPC_P7146 Phytophthora_nicotianae_WPC_P7146_P582 Phytophthora_niederhauserii_CBS_124086 Phytophthora_palmivora_CBS_236.30 Phytophthora_palmivora_WPC_P0113 Phytophthora_palmivora_WPC_P0255 Phytophthora_palmivora_WPC_P0255_CBS_236.30 Phytophthora_palmivora_WPC_P10212 Phytophthora_pseudosyringae_CBS_111772 Phytophthora_pseudosyringae_PH048 Phytophthora_pseudosyringae_WPC_P10443 Phytophthora_psychrophila_CBS_803.95 Phytophthora_psychrophila_PH097 Phytophthora_psychrophila_WPC_P10434 Phytophthora_quercina_BD10 Phytophthora_quercina_BD549 Phytophthora_quercina_CBS_782.95 Phytophthora_quercina_CBS_784.95 Phytophthora_quercina_PL7 Phytophthora_quercina_PL9 Phytophthora_quininea_CBS_406.48 Phytophthora_quininea_CBS_407.48 Phytophthora_quininea_CBS_407.48_CBS_406.48 Phytophthora_sansomeana_CBS_117692 Phytophthora_sansomeana_CBS_117692_China Phytophthora_sansomeana_China Phytophthora_sp._ohioensis_WPC_P16050 'Phytophthora sp. quercina-like MN 023' Phytophthora_sp._versiformis_PAB11.79 Phytophthora_sp._versiformis_TP13.10 Phytophthora_sp._versiformis_TP13.29 Phytophthora_sp._versiformis_TP13.34 Phytophthora_sp._versiformis_TP13.46 'Phytophthora sp. versiformis-like MJ5' 'Phytophthora sp. versiformis-like TP13.14' Phytophthora_stricta_ATCC_MYA4944 Phytophthora_tropicalis_AN9786 Phytophthora_tropicalis_CBS_434.91 Phytophthora_tropicalis_CBS_434.91_AN9786 Phytophthora_tropicalis_NRCPh179 Phytophthora_tropicalis_WPC_P10452 Phytophthora_tubulina_CBS_141212 Phytophthora_tubulina_CBS_141213 Phytophthora_tubulina_TUB_3 Phytophthora_tubulina_TUB_4 Phytophthora_tubulina_TUB_5 ; END; BEGIN TREES; TITLE 'Phytophthora Clade12_ITS_Btub_HSP_NADH1_Bayesian'; LINK TAXA = Taxa; TREE 'Clade12_ITS_Btub_HSP_NADH1_Bayesian_tree' = [&R] ((((Phytophthora_insolita_CBS_691.79:0.100827,Phytophthora_quininea_CBS_407.48_CBS_406.48:0.093102)0.97:0.017034,Phytophthora_boehmeriae_CBS_291.29:0.113085)1.0:0.046159,((((((Phytophthora_cactorum_WPC_P11184_P6183:0.025029,(Phytophthora_infestans_WPC_P10651_Pic99186:0.047875,Phytophthora_nicotianae_WPC_P7146_P582:0.032122)1.0:0.009604)1.0:0.022933,((((Phytophthora_capsici_CBS_121656_RLW2002_MS8:0.013807,Phytophthora_tropicalis_CBS_434.91_AN9786:0.011024)1.0:0.015059,Phytophthora_meadii_CBS_219.88_WPC_P6262:0.031921)0.97:0.008272,Phytophthora_multivora_CBS_124094:0.024898)1.0:0.024097,Phytophthora_multivesiculata_CBS_545.96:0.049239)1.0:0.020453,(Phytophthora_megakarya_WPC_P8518_IMI_337098:0.067008,Phytophthora_palmivora_WPC_P0255_CBS_236.30:0.059587)1.0:0.021201,(((((Phytophthora_castanetorum_CBS_142299:3.44E-4,Phytophthora_castanetorum_BD293:3.44E-4,Phytophthora_castanetorum_BD476:6.54E-4,Phytophthora_castanetorum_BD484:3.26E-4,(Phytophthora_castanetorum_CBS_142300:3.48E-4,Phytophthora_castanetorum_P17:3.38E-4,Phytophthora_castanetorum_P18:3.39E-4)1.0:0.001696)1.0:0.002226,(Phytophthora_quercina_BD10:0.001056,(Phytophthora_quercina_BD549:7.04E-4,(Phytophthora_quercina_PL7:3.45E-4,Phytophthora_quercina_PL9:3.47E-4)1.0:6.92E-4)0.99:7.14E-4)1.0:0.001704)1.0:0.004136,Phytophthora_sp._ohioensis_WPC_P16050:0.003677)1.0:0.005355,(('Phytophthora sp. versiformis-like MJ5':3.63E-4,'Phytophthora sp. versiformis-like TP13.14':6.93E-4)1.0:0.00145,(Phytophthora_sp._versiformis_PAB11.79:3.45E-4,(Phytophthora_sp._versiformis_TP13.10:3.54E-4,Phytophthora_sp._versiformis_TP13.29:3.54E-4)1.0:0.001036,Phytophthora_sp._versiformis_TP13.34:3.58E-4,Phytophthora_sp._versiformis_TP13.46:3.53E-4)1.0:0.001409)1.0:0.006931)0.99:0.003465,(Phytophthora_tubulina_CBS_141212:3.38E-4,Phytophthora_tubulina_TUB_3:3.32E-4,Phytophthora_tubulina_TUB_4:3.32E-4,Phytophthora_tubulina_TUB_5:3.29E-4,Phytophthora_tubulina_CBS_141213:3.26E-4)1.0:0.010742)1.0:0.055668)0.95:0.006548,(Phytophthora_ilicis_CBS_255.93_CBS_114348:0.007698,Phytophthora_nemorosa_CBS_114870_WPC_P10612:0.007193)1.0:0.047754)0.95:0.008675,(Phytophthora_castaneae_WPC_P10187:0.00727,Phytophthora_heveae_CBS_296.29:0.007586)1.0:0.044784)1.0:0.010454,(((Phytophthora_attenuata:0.031178,Phytophthora_cinnamomi_CBS_144.22:0.02274)1.0:0.012081,Phytophthora_niederhauserii_CBS_124086:0.030926)1.0:0.024981,(Phytophthora_lateralis_CBS_168.42_WPC_P1728:0.068898,Phytophthora_sansomeana_CBS_117692_China:0.061393)1.0:0.025459)1.0:0.012497)1.0:0.016863,(Phytophthora_asparagi_VHS_17644:0.034658,Phytophthora_humicola_CBS_200.81:0.072483)1.0:0.017233)1.0:0.026504):0.119903,Nothophytophthora_amphigynosa_CBS_142348:0.119903); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr104203] END;